Citrus Sinensis ID: 037392

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MAARESPPGIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELCS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccHHHHHHccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccEEccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccEEEccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEEEHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccEEEEEEcccEEEEEEcccccEEEEEcccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maaresppgiqikvnskggggsgsgntvhpveemdrpqgvsapppavygeikhskKWVTWLIPCFVVANIAMFVITMYvnncpknsvSCVARFLgrfsfqpfkenpllgpssvtlqkmgaldvskvvdkhqgwrlitcnwlhgGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVgilphvdnfahiggFISGFLLGFVFlirpqfgwveqRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRgvdandhcswchylscvptsrwscrtepafcsttqdgnqlnvtcssngksnlyilsnpsssqIQSLCTELCS
Flexible Loop (DISEMBL)
maaresppgiqikvnskggggsGSGNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFcsttqdgnqlNVTCSSNGKSNLYIlsnpsssqiqSLCTELCS
Low Complexity Region (SEG)
MAARESPPGIQIKVNSKggggsgsgNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNIsvgasgalfgllgsmlsELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHiggfisgfllgfvfliRPQFGWVEQRYALSGYSALSRRKFMTYQCilwivslvlvivgltlglvmllrgvDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELCS
Disordered region (IsUnstruct)
**********************************************VYGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTC*******LYI******************
Disordered Region (DISOPRED)
********************************************************WVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQD*****VTCSSNGKSNLYILSNPSSSQIQSLCTELCS
Disordered Region (DISEMBL)
********GIQIKVNSK********NTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILSNP**************
Disordered Region (DISPRO)
*********IQ*****************************************HSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELCS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARESPPGIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.493	0.224	0.342	5e-27
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.488	0.221	0.311	1e-23
A7YWH9	856	Inactive rhomboid protein	yes	no	0.488	0.221	0.316	2e-23
Q499S9	856	Inactive rhomboid protein	yes	no	0.488	0.221	0.311	3e-23
Q96CC6	855	Inactive rhomboid protein	yes	no	0.488	0.222	0.311	3e-23
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.488	0.222	0.311	4e-23
B1MT31	855	Inactive rhomboid protein	N/A	no	0.488	0.222	0.306	4e-23
B0VX73	855	Inactive rhomboid protein	yes	no	0.488	0.222	0.306	5e-23
Q00M95	827	Inactive rhomboid protein	no	no	0.501	0.235	0.364	2e-22
A0JPA1	826	Inactive rhomboid protein	no	no	0.496	0.233	0.359	3e-22

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 111/213 (52%), Gaps = 21/213 (9%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH G+ H L ++   + I   LE+  G++R+ ++YI+SG  G+L SA+F+
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  ELI +W I     + F  L+ ++    A G+LP +DNFA
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFA 773

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGL 308
           HI GFISGF L F FL    FG ++                  Y+    I+  ++V +GL
Sbjct: 774 HISGFISGFFLSFAFLPYISFGRLD-----------------MYRKRCQIIIFLVVFLGL 816

Query: 309 TLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
             GLV+L         C WC  L+C+P +   C
Sbjct: 817 FAGLVVLFYVHPIK--CEWCELLTCIPFTDKFC 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.
Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 25/215 (11%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH G+ H L ++   + +   LE+  G+ R+ ++Y++SG  G+L SA+F+
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  EL  +W I     + F  L+ ++    A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTY--QCILWIVSLVLVIV 306
           HI GF+SG  L F FL    FG                 KF  Y  +C + I  +V + +
Sbjct: 773 HISGFVSGLFLSFAFLPYISFG-----------------KFDLYRKRCQIIIFQVVFLGL 815

Query: 307 GLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
              L ++     V     C WC +L+C+P +   C
Sbjct: 816 LAGLVVLFYFYPV----RCEWCEFLTCIPFTDKFC 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 25/215 (11%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH GV H L ++   + +   LE+  G+ R+ ++Y++SG  G+L SA+F+
Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  EL  +W I     + F  L+ ++      G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 772

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTY--QCILWIVSLVLVIV 306
           HI GFISG  L F FL    FG                 KF  Y  +C + +  LV + +
Sbjct: 773 HISGFISGLFLSFAFLPYISFG-----------------KFDLYRKRCQIIVFQLVFLGL 815

Query: 307 GLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
              L ++     V     C WC +L+C+P +   C
Sbjct: 816 LAGLVVLFYFYPV----RCEWCEFLTCIPFTDKFC 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 25/215 (11%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH G+ H L ++   + +   LE+  G+ R+ ++Y++SG  G+L SA+F+
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  EL  +W I     + F  L+ ++    A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTY--QCILWIVSLVLVIV 306
           HI GF+SG  L F FL    FG                 KF  Y  +C + I   V + +
Sbjct: 773 HISGFVSGLFLSFAFLPYISFG-----------------KFDLYRKRCQIIIFQAVFLGL 815

Query: 307 GLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
              L ++     V     C WC +L+C+P +   C
Sbjct: 816 LAGLVVLFYFYPV----RCEWCEFLTCIPFTDKFC 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 25/215 (11%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH G+ H L ++   + +   LE+  G+ R+ ++Y++SG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  EL  +W I     + F  L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTY--QCILWIVSLVLVIV 306
           HI GFISG  L F FL    FG                 KF  Y  +C + I  +V + +
Sbjct: 772 HISGFISGLFLSFAFLPYISFG-----------------KFDLYRKRCQIIIFQVVFLGL 814

Query: 307 GLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
              L ++  +  V     C WC +L+C+P +   C
Sbjct: 815 LAGLVVLFYVYPV----RCEWCEFLTCIPFTDKFC 845

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 25/215 (11%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH G+ H L ++   + +   LE+  G+ R+ ++Y++SG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  EL  +W I     + F  L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTY--QCILWIVSLVLVIV 306
           HI GFISG  L F FL    FG                 KF  Y  +C + I  +V + +
Sbjct: 772 HISGFISGLFLSFAFLPYISFG-----------------KFDLYRKRCQIIIFQVVFLGL 814

Query: 307 GLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
              L ++     V     C WC +L+C+P +   C
Sbjct: 815 LAGLVVLFYFYPV----RCEWCEFLTCIPFTDKFC 845

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 25/215 (11%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH G+ H L ++   + +   LE+  G+ R+ ++Y++SG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  EL  +W I     + F  L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTY--QCILWIVSLVLVIV 306
           HI GFISG  L F FL    FG                 KF  Y  +C + +  +V + +
Sbjct: 772 HISGFISGLFLSFAFLPYISFG-----------------KFDLYRKRCQIIVFQVVFLGL 814

Query: 307 GLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
              L ++     V     C WC +L+C+P +   C
Sbjct: 815 LAGLVVLFYFYPV----RCEWCEFLTCIPFTDKFC 845

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 25/215 (11%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH G+ H L ++   + +   LE+  G+ R+ ++Y++SG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FG+L  +  EL  +W I     + F  L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTY--QCILWIVSLVLVIV 306
           HI GFISG  L F FL    FG                 KF  Y  +C + +  +V + +
Sbjct: 772 HISGFISGLFLSFAFLPYISFG-----------------KFDLYRKRCQIIVFQVVFLGL 814

Query: 307 GLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSC 341
              L ++  +  V     C WC +L+C+P +   C
Sbjct: 815 LAGLVVLFYVYPV----RCEWCEFLTCIPFTDKFC 845

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 111/217 (51%), Gaps = 22/217 (10%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH GV H L +++  + I   LE+  G+ R+ +++I+SG  G+L SA+F+
Sbjct: 624 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 683

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FGLL  +  EL  +W +     K FL L  I+      G+LP +DN A
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIA 743

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGL 308
           HI GF+SG LL F FL           Y   G S   R++       L +VSL LV  GL
Sbjct: 744 HIFGFLSGLLLAFAFLP----------YITFGTSDKYRKR------ALILVSL-LVFAGL 786

Query: 309 TLGLVMLLRGVDANDHCSWCHYLSCVP-TSRWSCRTE 344
              LV+ L     N    W  YL+C P TSR+  + E
Sbjct: 787 FASLVIWLYVYPIN--WPWIEYLTCFPFTSRFCEKYE 821

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Canis familiaris (taxid: 9615)

>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 112/214 (52%), Gaps = 21/214 (9%)

Query: 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
           Q +RL    +LH GV H   +++  + +   LE+  G++R+ ++YI+SG  G+L SALF+
Sbjct: 623 QFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITGNLASALFL 682

Query: 191 QSNISVGASGALFGLLGSMLSELITNWTIYTN--KHFLTLVVIIAINLAVGILPHVDNFA 248
                VG +G+ FGLL  +  EL  +W I     K FL L+ I+      G+LP +DN A
Sbjct: 683 PYRAEVGPAGSQFGLLACLFVELFQSWQILAKPWKAFLKLLGIVLFLFLFGLLPWIDNIA 742

Query: 249 HIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGL 308
           HI GF+SG LL F FL    FG  ++           R++ M       I+SL LV VGL
Sbjct: 743 HIFGFLSGLLLSFSFLPYITFGTADK----------FRKRAMI------IISL-LVFVGL 785

Query: 309 TLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCR 342
              LV+ L     N   +W  YL+C+P +   C 
Sbjct: 786 FASLVIWLYVYPIN--WAWIEYLTCLPFTNKFCE 817

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
356504274	385	PREDICTED: inactive rhomboid protein 1-l	0.982	0.992	0.721	1e-160
225440378	388	PREDICTED: inactive rhomboid protein 1 [	0.982	0.984	0.757	1e-160
363807474	384	uncharacterized protein LOC100805186 [Gl	0.961	0.973	0.725	1e-158
224090695	367	predicted protein [Populus trichocarpa]	0.876	0.929	0.796	1e-153
449483645	471	PREDICTED: uncharacterized protein LOC10	0.969	0.800	0.692	1e-146
147810722	754	hypothetical protein VITISV_026278 [Viti	0.910	0.469	0.753	1e-146
297740363	320	unnamed protein product [Vitis vinifera]	0.817	0.993	0.815	1e-146
449440331	397	PREDICTED: uncharacterized protein LOC10	0.969	0.949	0.692	1e-145
225434919	391	PREDICTED: inactive rhomboid protein 1 [	0.971	0.966	0.659	1e-144
147818034	391	hypothetical protein VITISV_021082 [Viti	0.971	0.966	0.659	1e-144

>gi|356504274|ref|XP_003520922.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 283/392 (72%), Positives = 322/392 (82%), Gaps = 10/392 (2%)

Query: 1   MAARESPPGIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTW 60
           M+    P  I ++VNSK G        VHPV   +  +     P     E+KH +KW +W
Sbjct: 1   MSGEPRPLEIHLRVNSKRGT-----TMVHPVAAAETVEVPIQYPRE--EEVKHYRKWFSW 53

Query: 61  LIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGA 120
           LIP FVVANI MFVITMYVNNCP+NSVSC+A FLGRFSFQPFKENPLLGPSS+TLQKMGA
Sbjct: 54  LIPLFVVANIVMFVITMYVNNCPRNSVSCIASFLGRFSFQPFKENPLLGPSSLTLQKMGA 113

Query: 121 LDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGF 180
           LDVS+VV +HQGWRLITC WLH GVFH+LANML +LVIGIRLEQEFGF+ +GLL++ISGF
Sbjct: 114 LDVSRVVHRHQGWRLITCMWLHAGVFHLLANMLGILVIGIRLEQEFGFVLIGLLFVISGF 173

Query: 181 GGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLAV 238
           GGSLLSALFIQSNISVGASGALFGLLG MLSELITNW+IY NK    LTLV+II INLAV
Sbjct: 174 GGSLLSALFIQSNISVGASGALFGLLGGMLSELITNWSIYDNKLTALLTLVIIIVINLAV 233

Query: 239 GILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYS-ALSRRKFMTYQCILW 297
           GILPHVDNFAHIGGF++GFLLGFVFLIRPQFGWV QRYA   YS    + KF  YQCILW
Sbjct: 234 GILPHVDNFAHIGGFLTGFLLGFVFLIRPQFGWVNQRYAPLNYSPGRVKPKFKKYQCILW 293

Query: 298 IVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQL 357
           + SL++++VGL++GLV LL+GVDANDHCSWCHYLSCVPTS+WSC TE A+C + Q GNQL
Sbjct: 294 VFSLIILVVGLSVGLVALLQGVDANDHCSWCHYLSCVPTSKWSCHTEAAYCQSNQLGNQL 353

Query: 358 NVTCSSNGKSNLYILSNPSSSQIQSLCTELCS 389
           NVTCSSNGKS+ Y + NP+SSQIQ LCT+LCS
Sbjct: 354 NVTCSSNGKSSTYFMQNPTSSQIQQLCTQLCS 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440378|ref|XP_002270642.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/392 (75%), Positives = 333/392 (84%), Gaps = 10/392 (2%)

Query: 3   ARESPPGIQIKVNSKGGGGSGSGNTVHPVE---EMDRPQGVSAPPPAVYGEIKHSKKWVT 59
           AR+    I+I+V SK G      N +HPVE       P     P P VY EIKH KKWV 
Sbjct: 2   ARDPSSSIEIRVLSKRGS-----NVIHPVEVDTPPLLPSPSPGPVPVVYREIKHFKKWVP 56

Query: 60  WLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMG 119
           WLIP FVVANI MF ITMYVNNCPKNS+SC+A FLGRFSFQPFKENPLLGPSS TLQKMG
Sbjct: 57  WLIPSFVVANIIMFGITMYVNNCPKNSISCIADFLGRFSFQPFKENPLLGPSSSTLQKMG 116

Query: 120 ALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISG 179
           ALDVS+VVD+HQGWRLITC WLHGGVFH+LANMLSLLVIGIRLEQEFGF++VGLLY+ISG
Sbjct: 117 ALDVSRVVDRHQGWRLITCIWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISG 176

Query: 180 FGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLA 237
           FGGSLLS LFIQ NISVGASGALFGLLG MLSELITNW+IY NK   FLTLV+IIAINLA
Sbjct: 177 FGGSLLSGLFIQENISVGASGALFGLLGGMLSELITNWSIYANKLAAFLTLVIIIAINLA 236

Query: 238 VGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILW 297
           VGILPHVDNFAHIGGF+SGFLLGFVFLIRPQFGWV Q YA   +S   + KF TYQCILW
Sbjct: 237 VGILPHVDNFAHIGGFLSGFLLGFVFLIRPQFGWVSQIYASPEHSTSPKPKFKTYQCILW 296

Query: 298 IVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQL 357
           + S++L+I+GLTLGLVMLLRGVDAND CSWCHYLSCVPTS+WSC+TEPA+C + Q GNQL
Sbjct: 297 VASVILLIIGLTLGLVMLLRGVDANDRCSWCHYLSCVPTSKWSCKTEPAYCLSNQIGNQL 356

Query: 358 NVTCSSNGKSNLYILSNPSSSQIQSLCTELCS 389
           N+TCSSNGKS++Y+L++P+SSQIQ LC++LC+
Sbjct: 357 NLTCSSNGKSSIYLLADPTSSQIQGLCSQLCN 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807474|ref|NP_001242137.1| uncharacterized protein LOC100805186 [Glycine max] gi|255644920|gb|ACU22960.1| unknown [Glycine max]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/386 (72%), Positives = 317/386 (82%), Gaps = 12/386 (3%)

Query: 7   PPGIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLIPCFV 66
           P  I ++VNSK GG +     VHPV        V    P     +KH +KW  WLIP FV
Sbjct: 8   PLEIHLRVNSKRGGTT----MVHPVAT-----AVPVQYPREEEGVKHYRKWFAWLIPLFV 58

Query: 67  VANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKV 126
           VAN+AMF ITMYVNNCP+NSVSC+A FLGRFSFQPFKENPLLGPSS+TLQKMGALDVS+V
Sbjct: 59  VANVAMFAITMYVNNCPRNSVSCIASFLGRFSFQPFKENPLLGPSSLTLQKMGALDVSRV 118

Query: 127 VDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLS 186
           V KHQGWRL+TC WLH GVFH+LANML +LVIGIRLEQEFGF+ +GLL+ ISGFGGSLLS
Sbjct: 119 VHKHQGWRLVTCMWLHAGVFHLLANMLGILVIGIRLEQEFGFVLIGLLFFISGFGGSLLS 178

Query: 187 ALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLAVGILPHV 244
           ALFIQSNISVGASGALFGLLG MLSELITNW+IY NK    LTLV+II INLAVGILPHV
Sbjct: 179 ALFIQSNISVGASGALFGLLGGMLSELITNWSIYDNKLAALLTLVIIIVINLAVGILPHV 238

Query: 245 DNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYS-ALSRRKFMTYQCILWIVSLVL 303
           DNFAHIGGF++GFLLGFVFLIRPQFGWV QRYA   YS   S+ KF  YQCILW++SL++
Sbjct: 239 DNFAHIGGFLTGFLLGFVFLIRPQFGWVNQRYAPLNYSPGRSKPKFKKYQCILWVLSLII 298

Query: 304 VIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSS 363
           ++VGL++GLV LLRGVDAND CSWCHYLSCVPTS+WSC TE A+C + Q GNQLNVTCSS
Sbjct: 299 LVVGLSVGLVALLRGVDANDRCSWCHYLSCVPTSKWSCHTEAAYCESNQLGNQLNVTCSS 358

Query: 364 NGKSNLYILSNPSSSQIQSLCTELCS 389
            GK + Y + NP+SSQIQ LC++LCS
Sbjct: 359 TGKFSTYFMENPTSSQIQQLCSQLCS 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090695|ref|XP_002309063.1| predicted protein [Populus trichocarpa] gi|222855039|gb|EEE92586.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/344 (79%), Positives = 308/344 (89%), Gaps = 3/344 (0%)

Query: 48  YGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPL 107
           +G+ +  KKW  WLIP FV+AN+ MF+ITMYVNNCPKN VSC+ARFLGRFSFQPFKENPL
Sbjct: 23  HGKARPFKKWWPWLIPAFVIANVVMFIITMYVNNCPKNYVSCIARFLGRFSFQPFKENPL 82

Query: 108 LGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFG 167
           LGPSS++LQKMGALDV KVVD HQ WRLITCNWLHGGVFH+LANMLSLLVIGIRLEQEFG
Sbjct: 83  LGPSSISLQKMGALDVQKVVDGHQWWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFG 142

Query: 168 FIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNK--HF 225
           F++VGLLY+ISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIY N+   F
Sbjct: 143 FVKVGLLYVISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYANQVAAF 202

Query: 226 LTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALS 285
           +TLVVIIA+NLA+GILPHVDNFAHIGGF+SGFLLGFVFLIRPQFGW  QR A  GY   S
Sbjct: 203 ITLVVIIAVNLALGILPHVDNFAHIGGFLSGFLLGFVFLIRPQFGWFSQRRAPLGYIPAS 262

Query: 286 -RRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTE 344
            + KF TYQC LWI+SL+L+I GLT+G+V+LLRGVDAN+HCSWCHYLSCVPT +WSC+TE
Sbjct: 263 VKSKFKTYQCALWIISLILLIAGLTIGMVLLLRGVDANEHCSWCHYLSCVPTGKWSCKTE 322

Query: 345 PAFCSTTQDGNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELC 388
           PA+C +TQ GNQLN+TCSSNGKS++YIL   +SSQIQ LCT LC
Sbjct: 323 PAYCLSTQIGNQLNLTCSSNGKSSVYILPGATSSQIQGLCTGLC 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483645|ref|XP_004156648.1| PREDICTED: uncharacterized protein LOC101224387 [Cucumis sativus]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/390 (69%), Positives = 309/390 (79%), Gaps = 13/390 (3%)

Query: 3   ARESPPGIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLI 62
           A   P  IQI         S  G  +HP+E     Q + A     + E+K  +KW+ WLI
Sbjct: 92  AEHHPLDIQIN--------SRQGTAIHPIEA--DGQSLQASGSVAFWEVKQFRKWIPWLI 141

Query: 63  PCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALD 122
           P FV+ANI  F ITM VNNCPKNSVSC+ARFLGRFSFQ  KENPLLGPSS+TL++MGAL+
Sbjct: 142 PSFVIANIVTFFITMSVNNCPKNSVSCIARFLGRFSFQSLKENPLLGPSSLTLRRMGALE 201

Query: 123 VSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGG 182
           V+KVV  +Q WRLITC WLH GVFH+LANMLSLLVIGIRLEQEFGFIR+GLLY+ISGFGG
Sbjct: 202 VNKVVHGNQLWRLITCIWLHAGVFHLLANMLSLLVIGIRLEQEFGFIRIGLLYVISGFGG 261

Query: 183 SLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLAVGI 240
           SLLS+LFIQSNISVGASGALFGLLG MLSELITNWTIY+NK    +TL+VIIAINLAVGI
Sbjct: 262 SLLSSLFIQSNISVGASGALFGLLGGMLSELITNWTIYSNKVAALVTLLVIIAINLAVGI 321

Query: 241 LPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSAL-SRRKFMTYQCILWIV 299
           LPHVDNFAHIGGFISGFLLGFVFLIRPQFGWV QRY     S+  +  KF  YQC+LWI+
Sbjct: 322 LPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVSQRYTSQTNSSFGANHKFKIYQCVLWII 381

Query: 300 SLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNV 359
           SL+L+I G T+G+V+L RG DAN HCSWCHYLSCVPTS+WSC +EP +C + Q GNQLN+
Sbjct: 382 SLILLIAGFTVGMVLLSRGFDANRHCSWCHYLSCVPTSKWSCNSEPTYCLSQQVGNQLNL 441

Query: 360 TCSSNGKSNLYILSNPSSSQIQSLCTELCS 389
           TCSSNGK   YIL N S+S IQ LC+ LC+
Sbjct: 442 TCSSNGKFRTYILPNASNSAIQGLCSSLCN 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810722|emb|CAN71797.1| hypothetical protein VITISV_026278 [Vitis vinifera]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/365 (75%), Positives = 301/365 (82%), Gaps = 11/365 (3%)

Query: 3   ARESPPGIQIKVNSKGGGGSGSGNTVHPVE---EMDRPQGVSAPPPAVYGEIKHSKKWVT 59
           AR+    I+I+V SK G      N +HPVE       P     P P VY EIKH KKWV 
Sbjct: 2   ARDPSSSIEIRVLSKRGS-----NVIHPVEVDTPPLLPSPSPGPVPVVYREIKHFKKWVP 56

Query: 60  WLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMG 119
           WLIP FVVANI MF ITMYVNNCPKNS+SC+A FLGRFSFQPFKENPLLGPSS TLQKMG
Sbjct: 57  WLIPSFVVANIIMFGITMYVNNCPKNSISCIADFLGRFSFQPFKENPLLGPSSSTLQKMG 116

Query: 120 ALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISG 179
           ALDVS+VVD+HQGWRLITC WLHGGVFH+LANMLSLLVIGIRLEQEFGF++VGLLY+ISG
Sbjct: 117 ALDVSRVVDRHQGWRLITCIWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISG 176

Query: 180 FGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLA 237
           FGGSLLS LFIQ NISVGASGALFGLLG MLSELITNW+IY NK   FLTLV+IIAINLA
Sbjct: 177 FGGSLLSGLFIQENISVGASGALFGLLGGMLSELITNWSIYANKLAAFLTLVIIIAINLA 236

Query: 238 VGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILW 297
           VGILPHVDNFAHIGGF+SGFLLGFVFLIRPQFGWV Q YA   +S   + KF TYQCILW
Sbjct: 237 VGILPHVDNFAHIGGFLSGFLLGFVFLIRPQFGWVSQIYASPEHSTSPKPKFKTYQCILW 296

Query: 298 IVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQL 357
           + S++L+I+GLTLGLVMLLRGVDAND CSWCHYLSCVPTS+WSC+TEPA+C        +
Sbjct: 297 VASVILLIIGLTLGLVMLLRGVDANDRCSWCHYLSCVPTSKWSCKTEPAYCLMAMAVRAV 356

Query: 358 NVTCS 362
           N TCS
Sbjct: 357 N-TCS 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740363|emb|CBI30545.3| unnamed protein product [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/320 (81%), Positives = 293/320 (91%), Gaps = 2/320 (0%)

Query: 72  MFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQ 131
           MF ITMYVNNCPKNS+SC+A FLGRFSFQPFKENPLLGPSS TLQKMGALDVS+VVD+HQ
Sbjct: 1   MFGITMYVNNCPKNSISCIADFLGRFSFQPFKENPLLGPSSSTLQKMGALDVSRVVDRHQ 60

Query: 132 GWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQ 191
           GWRLITC WLHGGVFH+LANMLSLLVIGIRLEQEFGF++VGLLY+ISGFGGSLLS LFIQ
Sbjct: 61  GWRLITCIWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGGSLLSGLFIQ 120

Query: 192 SNISVGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLAVGILPHVDNFAH 249
            NISVGASGALFGLLG MLSELITNW+IY NK   FLTLV+IIAINLAVGILPHVDNFAH
Sbjct: 121 ENISVGASGALFGLLGGMLSELITNWSIYANKLAAFLTLVIIIAINLAVGILPHVDNFAH 180

Query: 250 IGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLT 309
           IGGF+SGFLLGFVFLIRPQFGWV Q YA   +S   + KF TYQCILW+ S++L+I+GLT
Sbjct: 181 IGGFLSGFLLGFVFLIRPQFGWVSQIYASPEHSTSPKPKFKTYQCILWVASVILLIIGLT 240

Query: 310 LGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNL 369
           LGLVMLLRGVDAND CSWCHYLSCVPTS+WSC+TEPA+C + Q GNQLN+TCSSNGKS++
Sbjct: 241 LGLVMLLRGVDANDRCSWCHYLSCVPTSKWSCKTEPAYCLSNQIGNQLNLTCSSNGKSSI 300

Query: 370 YILSNPSSSQIQSLCTELCS 389
           Y+L++P+SSQIQ LC++LC+
Sbjct: 301 YLLADPTSSQIQGLCSQLCN 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440331|ref|XP_004137938.1| PREDICTED: uncharacterized protein LOC101206123 [Cucumis sativus]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/390 (69%), Positives = 309/390 (79%), Gaps = 13/390 (3%)

Query: 3   ARESPPGIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWLI 62
           A   P  IQI         S  G  +HP+E     Q + A     + E+K  +KW+ WLI
Sbjct: 18  AEHHPLDIQIN--------SRQGTAIHPIEA--DGQSLQASGSVAFWEVKQFRKWIPWLI 67

Query: 63  PCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALD 122
           P FV+ANI  F ITM VNNCPKNSVSC+ARFLGRFSFQ  KENPLLGPSS+TL++MGAL+
Sbjct: 68  PSFVIANIVTFFITMSVNNCPKNSVSCIARFLGRFSFQSLKENPLLGPSSLTLRRMGALE 127

Query: 123 VSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGG 182
           V+KVV  +Q WRLITC WLH GVFH+LANMLSLLVIGIRLEQEFGFIR+GLLY+ISGFGG
Sbjct: 128 VNKVVHGNQLWRLITCIWLHAGVFHLLANMLSLLVIGIRLEQEFGFIRIGLLYVISGFGG 187

Query: 183 SLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLAVGI 240
           SLLS+LFIQSNISVGASGALFGLLG MLSELITNWTIY+NK    +TL+VIIAINLAVGI
Sbjct: 188 SLLSSLFIQSNISVGASGALFGLLGGMLSELITNWTIYSNKVAALVTLLVIIAINLAVGI 247

Query: 241 LPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSAL-SRRKFMTYQCILWIV 299
           LPHVDNFAHIGGFISGFLLGFVFLIRPQFGWV QRY     S+  +  KF  YQC+LWI+
Sbjct: 248 LPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVSQRYTSQTNSSFGANHKFKIYQCVLWII 307

Query: 300 SLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNV 359
           SL+L+I G T+G+V+L RG DAN HCSWCHYLSCVPTS+WSC +EP +C + Q GNQLN+
Sbjct: 308 SLILLIAGFTVGMVLLSRGFDANRHCSWCHYLSCVPTSKWSCNSEPTYCLSQQVGNQLNL 367

Query: 360 TCSSNGKSNLYILSNPSSSQIQSLCTELCS 389
           TCSSNGK   YIL N S+S IQ LC+ LC+
Sbjct: 368 TCSSNGKFRTYILPNASNSAIQGLCSSLCN 397

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434919|ref|XP_002283488.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/396 (65%), Positives = 319/396 (80%), Gaps = 18/396 (4%)

Query: 5   ESPP--GIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGV---SAPPPA---VYGEIKHSKK 56
             PP   I+IK++ +        N VHP   +  P G+   SAPP     ++ E +  K+
Sbjct: 3   SDPPSSNIEIKIHPRR-----QDNVVHPA--VPSPMGIPAASAPPRQQQHLFSEFRPFKR 55

Query: 57  WVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQ 116
           W  W++P FVVANIAMF+ITM++NNCPKNSVSCVA FLGRFSFQP KENPLLGPSS TL+
Sbjct: 56  WFPWMVPTFVVANIAMFLITMFINNCPKNSVSCVADFLGRFSFQPLKENPLLGPSSSTLE 115

Query: 117 KMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYI 176
           KMGAL+VSKVV +HQ WRLI+C WLH GVFH+LANMLSL+ IGIRLEQEFGF+R+GLLY+
Sbjct: 116 KMGALEVSKVVHRHQVWRLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYV 175

Query: 177 ISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKH--FLTLVVIIAI 234
           +SGFGGS+LS+LFIQS+ISVGASGALFGLLG MLSELITNWTIY NK    LTL++II +
Sbjct: 176 VSGFGGSMLSSLFIQSSISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIV 235

Query: 235 NLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALS-RRKFMTYQ 293
           NLAVGILPHVDNFAHIGGF+SGFLLGFVFLIRPQFGWV QR A  G+ A S + K   YQ
Sbjct: 236 NLAVGILPHVDNFAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAPSVKPKHKMYQ 295

Query: 294 CILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQD 353
            +LW++SL+L+ VG T+G+VMLLRGV  ND CSWCHYLSCVPTS+WSC+++  +C +T  
Sbjct: 296 YVLWVMSLILLTVGFTVGMVMLLRGVSGNDQCSWCHYLSCVPTSKWSCKSQQVYCESTTI 355

Query: 354 GNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELCS 389
           GNQLN+TC SNG+SN+Y+L + ++SQ+Q LC++LC+
Sbjct: 356 GNQLNLTCLSNGRSNIYLLPDDNTSQVQQLCSQLCN 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818034|emb|CAN64890.1| hypothetical protein VITISV_021082 [Vitis vinifera]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/396 (65%), Positives = 318/396 (80%), Gaps = 18/396 (4%)

Query: 5   ESPP--GIQIKVNSKGGGGSGSGNTVHPVEEMDRPQGV---SAPPPA---VYGEIKHSKK 56
             PP   I+IK++ +        N VHP   +  P G+   SAPP     ++ E +  K+
Sbjct: 3   SDPPSSNIEIKIHPRR-----QDNVVHPA--VPSPMGIPAASAPPRQQQHLFSEFRPFKR 55

Query: 57  WVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQ 116
           W  W++P FVVANIAMF+ITM++NNCPKNSVSCVA FLGRFSFQP KENPLLGPSS TL+
Sbjct: 56  WFPWMVPTFVVANIAMFLITMFINNCPKNSVSCVADFLGRFSFQPLKENPLLGPSSSTLE 115

Query: 117 KMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYI 176
           KMGAL+VSKVV +HQ WRLI+C WLH GVFH+LANMLSL+ IGIRLEQEFGF+R+GLLY+
Sbjct: 116 KMGALEVSKVVHRHQVWRLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYV 175

Query: 177 ISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKH--FLTLVVIIAI 234
           +SGFGGS+LS+LFIQS+ISVGASGALFGLLG MLSELITNWTIY NK    LTL++II +
Sbjct: 176 VSGFGGSMLSSLFIQSSISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIV 235

Query: 235 NLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALS-RRKFMTYQ 293
           NLAVGILPHVDNFAHIGGF+SGFLLGFVFLIRPQFGWV QR A  G+ A S + K   YQ
Sbjct: 236 NLAVGILPHVDNFAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAXSVKPKHKMYQ 295

Query: 294 CILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQD 353
            +LW++SL+L+ VG T+G+VMLLRGV  ND CSWCHYLSCVPTS+WSC+++  +C +T  
Sbjct: 296 YVLWVMSLILLTVGFTVGMVMLLRGVXGNDXCSWCHYLSCVPTSKWSCKSQQVYCESTTI 355

Query: 354 GNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELCS 389
           GNQLN+TC SNG+SN+Y+L +  +SQ+Q LC++LC+
Sbjct: 356 GNQLNLTCLSNGRSNIYLLPDDXTSQVQQLCSQLCN 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	0.984	0.984	0.510	6.9e-102
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.858	0.847	0.558	7.9e-101
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.745	0.914	0.503	1.3e-77
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.778	0.875	0.479	5.5e-77
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.742	0.941	0.459	7e-70
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.748	0.929	0.425	4.2e-63
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.658	0.828	0.449	1.4e-55
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.491	0.544	0.402	2.9e-48
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.385	0.306	0.350	2.1e-24
CGD|CAL0003539	669	RBD1 [Candida albicans (taxid:	0.305	0.177	0.312	8.4e-16

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 199/390 (51%), Positives = 244/390 (62%)

Query:     3 ARESPPGIQIKV-NSKXXXXXXXXNTVHPVEEMDRPQGVSAPPPAVYGEIKHSKKWVTWL 61
             AR+   G++IKV N              P     R +       A + E +  K W  WL
Sbjct:     2 ARDRREGLEIKVVNPPAAATNNVAVETSPATATRRRRQQQR---ASFAEFRPFKLWFPWL 58

Query:    62 IPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGAL 121
             +P  VVANIA+F I+M++NNCPKNS  C+ARFLGRF+FQP KENPLLGPSS+TL+KMGAL
Sbjct:    59 VPAIVVANIALFAISMFINNCPKNSAYCLARFLGRFAFQPMKENPLLGPSSLTLEKMGAL 118

Query:   122 DVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFG 181
             DVS VV KH+ WRL TC WLH GVFH+LANMLSL+ IGIRLEQEFGF+R+GLLY+ISGFG
Sbjct:   119 DVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFG 178

Query:   182 GSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWTIYTNKH--FLTLVVIIAINLAVG 239
             GSLLS+LF ++ I                 EL+TNWTIY NK    LTL+ IIAINLAVG
Sbjct:   179 GSLLSSLFNRAGISVGASGALFGLLGAMLSELLTNWTIYANKFAALLTLIFIIAINLAVG 238

Query:   240 ILPHVDNFAHXXXXXXXXXXXXXXXXRPQFGWVEQRYALSGYSALSRR-KFMTYQCXXXX 298
             ILPHVDNFAH                RPQ+G+  QR    GY+A S + K   YQ     
Sbjct:   239 ILPHVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNPRGYAAPSAKSKHKPYQYVLWI 298

Query:   299 XXXXXXXXXXXXXXXXXXXXXDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLN 358
                                  D N HCSWCHYLSC+PTS WSC+++  +C ++Q G Q+N
Sbjct:   299 TSLVLLIAGYTAGLVVLLRGTDLNKHCSWCHYLSCIPTSLWSCKSQNVYCESSQIGQQMN 358

Query:   359 VTCSSNGKSNLYILSNPSSSQIQSLCTELC 388
             +TC +NGK+ +Y LSN   S+IQ LC++LC
Sbjct:   359 LTCITNGKTEMYKLSNDIPSRIQQLCSQLC 388

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 190/340 (55%), Positives = 227/340 (66%)

Query:    51 IKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGP 110
             +K  + W  WLIPCFVVAN+A+FVITMYVNNCPK S  C A FLGRFSFQ  +ENPLLGP
Sbjct:    58 VKEFRSWFPWLIPCFVVANVAVFVITMYVNNCPKKSGDCFADFLGRFSFQNTRENPLLGP 117

Query:   111 SSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIR 170
             SS+TLQ MG LDV KVV   +GWRL++CNWLHGGV H+L NML+LL IGIR+E+EFGFIR
Sbjct:   118 SSLTLQTMGGLDVKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIR 177

Query:   171 VGLLYIISGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWTIYTNK--HFLTL 228
             +GLLY+ISGFGGS+LSALF++SNI                 E+  NWTIY+NK    +TL
Sbjct:   178 IGLLYLISGFGGSILSALFLRSNISVGASGAVFGLLGGMLSEIFINWTIYSNKVVTIVTL 237

Query:   229 VVIIAINLAVGILPHVDNFAHXXXXXXXXXXXXXXXXRPQFGWVEQRYALSGYSALSRRK 288
             V+I+A+NL +G+LP VDNFAH                RP +GW+ QR   +G  A   R 
Sbjct:   238 VLIVAVNLGLGVLPGVDNFAHIGGFATGFLLGFVLLIRPHYGWINQR---NGPGAKPHR- 293

Query:   289 FMTYQCXXXXXXXXXXXXXXXXXXXXXXXXXDANDHCSWCHYLSCVPTSRWSCRTEPAFC 348
             F  YQ                          D N+HCSWCHYLSCVPTS+WSC  EPA C
Sbjct:   294 FKIYQGILWTISLLILVAGFIVGLISLFNNVDGNEHCSWCHYLSCVPTSKWSCNREPASC 353

Query:   349 STTQDGNQLNVTCSSNGKSNLYILSNPSSSQIQSLCTELC 388
             +TTQ GNQL++TC  NGKS  YIL+NPS S+I SLC +LC
Sbjct:   354 TTTQLGNQLSMTCLRNGKSASYILANPSDSRINSLCVQLC 393

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 151/300 (50%), Positives = 185/300 (61%)

Query:    48 YGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKN----SVSCVARFLGRFSFQPFK 103
             Y E      W +WLIP  VVAN+A+F+  M+VN+CPK     +  CVARFLGRFSFQP K
Sbjct:    22 YEESSGETHWTSWLIPAIVVANLAVFIAVMFVNDCPKKITGPNKECVARFLGRFSFQPLK 81

Query:   104 ENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLE 163
             ENPL GPSS TL+KMGAL+  KVV +HQGWRL++C WLH G+ H+L NMLSL+ IGIRLE
Sbjct:    82 ENPLFGPSSSTLEKMGALEWRKVVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLE 141

Query:   164 QEFGFIRVGLLYIISGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWTIYTNK 223
             Q+FGFIRVGL+Y+ISG GGS+LS+LF+Q +I                 EL+TNWTIY NK
Sbjct:   142 QQFGFIRVGLIYLISGLGGSILSSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANK 201

Query:   224 H--FLTLVVIIAINLAVGILPHVDNFAHXXXXXXXXXXXXXXXXRPQFGWVEQRYALSGY 281
                 +TL+ IIAINLA+G+LP VDNFAH                RPQ+GW   R   S  
Sbjct:   202 AAALITLLFIIAINLALGMLPRVDNFAHIGGFLTGFCLGFVLLVRPQYGWEASRTNTSR- 260

Query:   282 SALSRRKFMTYQCXXXXXXXXXXXXXXXXXXXXXXXXXDANDHCSWCHYLSCVPTSRWSC 341
                ++RK+  YQ                          + N HC WCHYLSC PTS+W+C
Sbjct:   261 ---TKRKYSMYQYVLFVVSVVLLVVGLTVALVMLFKGENGNKHCKWCHYLSCFPTSKWTC 317

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 150/313 (47%), Positives = 194/313 (61%)

Query:    37 PQGVSAPPPAVYGEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVS------CV 90
             P  V+      +G+   S +W +WL+P FVVAN+A+FV+ M+VNNCP +  S      CV
Sbjct:    33 PLPVALSSSTEFGDNALSSRWTSWLVPMFVVANVAVFVVAMFVNNCPNHFESHRLRGHCV 92

Query:    91 ARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILA 150
             A+FLGR SF+P + NPL GPSS TL+K+GAL+ SKVV+K +GWRL+TC WLH GV H+ A
Sbjct:    93 AKFLGRLSFEPLRTNPLFGPSSHTLEKLGALEWSKVVEKKEGWRLLTCIWLHAGVIHLGA 152

Query:   151 NMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXX 210
             NMLSL+ IGIRLEQ+FGF+R+G++Y++SG GGS+LS+LFI+++I                
Sbjct:   153 NMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGSVLSSLFIRNSISVGASGALFGLLGSML 212

Query:   211 XELITNWTIYTNK--HFLTLVVIIAINLAVGILPHVDNFAHXXXXXXXXXXXXXXXXRPQ 268
              EL TNWTIY+NK    LTL+ +I INLA+GILPHVDNFAH                RPQ
Sbjct:   213 SELFTNWTIYSNKIAALLTLLFVILINLAIGILPHVDNFAHVGGFVTGFLLGFILLARPQ 272

Query:   269 FGWVEQRYALSGYSALSRRKFMTYQCXXXXXXXXXXXXXXXXXXXXXXXXXDANDHCSWC 328
             F W+ + +   G + L R K+ TYQ                          + NDHC WC
Sbjct:   273 FKWLAREHMPQG-TPL-RYKYKTYQYLLWLLSLVLLIAGFVVALLMLFRGENGNDHCRWC 330

Query:   329 HYLSCVPTSRWSC 341
             HYL CVPTS W C
Sbjct:   331 HYLRCVPTSSWRC 343

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 137/298 (45%), Positives = 176/298 (59%)

Query:    52 KH--SKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVS----CVARFLGRFSFQPFKEN 105
             KH    +W  WL P  VVAN+++F++ MY N+CPK +      CVA+ L RFSFQP +EN
Sbjct:    11 KHRGDTQWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAKLLRRFSFQPLREN 70

Query:   106 PLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQE 165
             P LGPSS TL+K+GALD  KVV  ++ WRLIT  WLH G+ H++ NM  +++ GIRLEQ+
Sbjct:    71 PFLGPSSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQ 130

Query:   166 FGFIRVGLLYIISGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWTIYTNK-- 223
             FGFIR+GL+Y+ISGFGGS+LSALF+Q +I                 EL+TNWTIY +K  
Sbjct:   131 FGFIRIGLIYLISGFGGSILSALFLQKSISVGASGALLGLMGAMLSELLTNWTIYKSKLC 190

Query:   224 HFLTLVVIIAINLAVGILPHVDNFAHXXXXXXXXXXXXXXXXRPQFGWVEQRYALSGYSA 283
               L+ + IIAINLA+G+LP VDNFAH                +PQ GW E R + S Y A
Sbjct:   191 ALLSFLFIIAINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQPQSGWEEFRNS-SQYGA 249

Query:   284 LSRRKFMTYQCXXXXXXXXXXXXXXXXXXXXXXXXXDANDHCSWCHYLSCVPTSRWSC 341
              +R K+   Q                          + N HC WCH L C PTS+WSC
Sbjct:   250 RARSKYNPCQYVLFFVAAVLVVAGLTVGLVMLFDGENGNKHCKWCHRLDCYPTSKWSC 307

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 125/294 (42%), Positives = 164/294 (55%)

Query:    49 GEIKHSKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLL 108
             GE     +W +W+IP  V+AN+ +FV+ MY N+CP  S  C+A+FLGRFSF+ FK NPLL
Sbjct:    21 GETTPDMQWRSWIIPIVVIANVVVFVVVMYYNDCPHKSHRCLAKFLGRFSFESFKSNPLL 80

Query:   109 GPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGF 168
             GPSS TL+KMGAL   K+V K Q WRL+TC WLH GV H+LANM  +  IG+RLEQ+FGF
Sbjct:    81 GPSSSTLEKMGALAWGKIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGF 140

Query:   169 IRVGLLYIISGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWTIYTNKH--FL 226
             +RVG +Y++SGF GS+LS LF++  I                 EL+ NWT Y NK    +
Sbjct:   141 VRVGTIYLVSGFCGSILSCLFLEDAISVGASSALFGLLGAMLSELLINWTTYDNKGVAIV 200

Query:   227 TLVVIIAINLAVGILPHVDNFAHXXXXXXXXXXXXXXXXRPQFGWVEQRYALSGYSALSR 286
              L+VI+ +NL +G LP VDNFAH                 PQF W E + +L     + +
Sbjct:   201 MLLVIVGVNLGLGTLPPVDNFAHIGGFFGGFLLGFLLLIHPQFEWEENQVSLMP-GTIVK 259

Query:   287 RKFMTYQCXXXXXXXXXXXXXXXXXXXXXXXXXDANDHCSWCHYLSCVPTSRWS 340
              K+ T Q                            N +C WCH LS    S+W+
Sbjct:   260 PKYNTCQLVLCIVASIVFVAGFTSGLVILFRGDSLNRYCKWCHKLSYSSKSQWT 313

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 119/265 (44%), Positives = 154/265 (58%)

Query:    37 PQGVSAPPPAVYGEIKHS--KKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVA-RF 93
             P   + PPP      +      WV WL+P  + AN   F  TMYVN+CP  S  C+    
Sbjct:     9 PDIENGPPPPARPHFRPPIPVPWVAWLVPLILAANFVTFATTMYVNDCPARSDECLLFDV 68

Query:    94 LGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANML 153
             LGR SFQP KEN LLGPS  TL+K+GAL+  ++V++ + WRLI+C WLHGG  H++ANM+
Sbjct:    69 LGRLSFQPIKENMLLGPSIPTLRKLGALE-RRLVEEGERWRLISCIWLHGGFLHLMANMI 127

Query:   154 SLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSN--IXXXXXXXXXXXXXXXXX 211
             SL+ IG+RLEQEFGF+R+G LY+ISG GGSL+S L       +                 
Sbjct:   128 SLMCIGMRLEQEFGFMRIGALYVISGLGGSLVSCLTDSQGERVSVGASGALFGLLGAMLS 187

Query:   212 ELITNWTIYTNK--HFLTLVVIIAINLAVGILPHVDNFAHXXXXXXXXXXXXXXXXRPQF 269
             ELITNWTIY NK    +TL++II +NL+VG LP VDN AH                RPQ+
Sbjct:   188 ELITNWTIYENKCTALMTLILIIVLNLSVGFLPRVDNSAHFGGFLAGFFLGFVLLLRPQY 247

Query:   270 GWVEQRYALSGYSALSRR-KFMTYQ 293
             G+V  +Y   GY    ++ K   YQ
Sbjct:   248 GYVNPKYIPPGYDMKHKKSKHKCYQ 272

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 78/194 (40%), Positives = 116/194 (59%)

Query:    59 TWLIPCFVVANIAMFVITMYVNNCPKNSVS-CVARFLGRFSFQPFKENPLLGPSSVTLQK 117
             TWL+  FV+  I +F +TM VN+C  NS   C A+ LGRFSFQ   ENP+LGPS+ TL+ 
Sbjct:    48 TWLVSVFVLLQIVLFAVTMGVNDCSGNSHGHCSAKLLGRFSFQSLSENPMLGPSASTLEH 107

Query:   118 MGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYII 177
             MG L    + + H+ WR++T  WLH G+FH+  N+ SL+ +GI +EQ+FG +R+ ++Y +
Sbjct:   108 MGGLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFL 167

Query:   178 SGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWTIYTNK-HFLTLV-VIIAIN 235
             SG  GSL + LF+++                    L  NW +Y +K   L ++  I  +N
Sbjct:   168 SGIMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVN 227

Query:   236 LAVGILPHVDNFAH 249
               +G LP +DNFA+
Sbjct:   228 FLIGFLPFIDNFAN 241

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 248 (92.4 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
 Identities = 54/154 (35%), Positives = 88/154 (57%)

Query:    99 FQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVI 158
             F+P+K NP  GP+S TL  +GA   S ++   + WR  T  +LH G+FH L NM++ L +
Sbjct:   261 FEPWKTNPWFGPNSYTLLDVGA-KYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRV 319

Query:   159 GIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWT 218
             G++LE+ +G  R+  +Y++ G  G+L SA+ + +++                 +LI NW+
Sbjct:   320 GMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWS 379

Query:   219 IYTNK--HFLTLVVIIAINLAVGI-LPHVDNFAH 249
             +      +F +L+  I  + AVG+ LP VDNFAH
Sbjct:   380 VLAKPWLNFGSLLFSIITSFAVGLFLPGVDNFAH 413

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

CGD|CAL0003539 RBD1 [Candida albicans (taxid:5476)]

 Score = 165 (63.1 bits), Expect = 8.4e-16, Sum P(3) = 8.4e-16
 Identities = 40/128 (31%), Positives = 60/128 (46%)

Query:   131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFI 190
             Q +R+    +LH G  HI+ N+L  + +G  +E+  G I+  ++YI SG GG LL A F 
Sbjct:   308 QWYRIFIPIFLHAGFLHIIFNLLLQVTMGSSIERNIGIIKYAIIYISSGIGGFLLGANFT 367

Query:   191 QSNIXXXXXXXXXXXXXXXXXELIT-----NWTIYTNKHFLTLVVI----IAINLAVGIL 241
                I                  L       N  +Y  KH+   + I    I I+L +G+L
Sbjct:   368 PQGIASTGASGALFGIVATNIILFIYTGKKNTNMYGTKHYALFICIMIGEIVISLVLGLL 427

Query:   242 PHVDNFAH 249
             P +DNF+H
Sbjct:   428 PGLDNFSH 435

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021327001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (388 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032471001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (293 aa)			•				•		0.508
	GSVIVG00000029001	SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (333 aa)			•				•		0.461

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-45
COG0705	228	COG0705, COG0705, Membrane associated serine prote	1e-24
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	2e-18
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	2e-10
TIGR04239	271	TIGR04239, rhombo_GlpG, rhomboid family protease G	0.002

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  153 bits (388), Expect = 2e-45
 Identities = 75/146 (51%), Positives = 98/146 (67%), Gaps = 3/146 (2%)

Query: 126 VVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLL 185
           ++ + Q WRLIT  +LH G  H+L NML+LL  GI LE+  G +R  LLY++SG  GSLL
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 186 SALF-IQSNISVGASGALFGLLGSMLSELITN-WTIYTN-KHFLTLVVIIAINLAVGILP 242
           S LF   S+ SVGASGA+FGLLG++L  L  N   ++      L L+ II +NL +G LP
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLP 120

Query: 243 HVDNFAHIGGFISGFLLGFVFLIRPQ 268
            + NFAH+GG I+G LLGF+ L RPQ
Sbjct: 121 GISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score =  100 bits (250), Expect = 1e-24
 Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 121 LDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGF 180
           L++   + + Q WRLIT  +LH G  H+L NML+L V G  LE+  G +R  L Y++SG 
Sbjct: 57  LNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGL 116

Query: 181 GGSLLSALFIQSN--ISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINL-- 236
              L   LF       S+GASGA+FGLLG+    L     I      L    +I I +  
Sbjct: 117 LAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFL-LFPFARILLLFLSLPRPALILILIWL 175

Query: 237 -------AVGILPHVDNFAHIGGFISGFLLGFVF 263
                  A    P V   AH+GG I G LL  + 
Sbjct: 176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL 209

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 108 LGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFG 167
           L PS   L  +GA +V+  + + +  RLI   +LH  +FH   N+   L +G  LE+ +G
Sbjct: 79  LTPSDSLLVTLGA-NVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYG 137

Query: 168 FIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTI-------Y 220
            +++ +LY ++G  G++LS+      I VGAS +  GLLG + SELI  W +        
Sbjct: 138 IVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVV 197

Query: 221 TNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVF 263
            N  F +L+         G   ++D+  H+GG +SG  +G ++
Sbjct: 198 FNIIFFSLISFFYYFTFNG--SNIDHVGHLGGLLSGISMGILY 238

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 19/149 (12%)

Query: 127 VDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLS 186
           + + + WRL+T +++H   +H+L N+  LL++ +  E+     R+ LL ++     SL  
Sbjct: 11  ILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLLISLGL 70

Query: 187 ALFIQSNIS-VGASGAL-----FGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGI 240
            LF+ S    VG SG L     +G L  +     + W +      L ++  +A     G 
Sbjct: 71  LLFLPSLQWYVGLSGVLHGLFAWGALRDIRYGRRSGWLL-----LLGVIAKLAWEQLFGA 125

Query: 241 LPHVDNF--------AHIGGFISGFLLGF 261
                          AH+ G +SG LL  
Sbjct: 126 SASTAELIGAPVATEAHLAGALSGLLLAL 154

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSA 187
            + Q WR  T   LH  + HI+ N+L    +G ++E+  G  ++ +L+++S    +    
Sbjct: 131 QQSQLWRWFTPALLHFSLLHIIFNLLWWWYLGGQIEKRLGSGKLLVLFLVSALLSNWAQY 190

Query: 188 LFIQSNISVGASGALFGLLGS--MLSELITNWTIYTNKHFLTLVVIIAINLAVG---ILP 242
           L    N   G SG ++ L+G   +  E      +   +    L+  + + L +G   +L 
Sbjct: 191 LVSGPNFG-GLSGVVYALVGYVWLRGERAPESGLGLPR---GLMGFMLVWLVLGFFDLLG 246

Query: 243 -HVDNFAHIGGFISGFLLGFV 262
             + N AH+ G + G L+ F 
Sbjct: 247 MSIANAAHLAGLLIGLLMAFW 267

GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain. Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	100.0
PTZ00101	278	rhomboid-1 protease; Provisional	100.0
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	100.0
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
COG0705	228	Membrane associated serine protease [Amino acid tr	99.91
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.9
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.63
KOG2980	310	consensus Integral membrane protease of the rhombo	98.74
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.2
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.81
KOG0858	239	consensus Predicted membrane protein [Function unk	97.79
KOG2890	326	consensus Predicted membrane protein [Function unk	96.96
KOG4463	323	consensus Uncharacterized conserved protein [Funct	95.79
COG5291	313	Predicted membrane protein [Function unknown]	94.22

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-47  Score=365.71  Aligned_cols=274  Identities=55%  Similarity=0.992  Sum_probs=250.0

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHhcCCCCC-Chh----hhHh-hhccccccCCCCCCCCCCchHHHHHhccccchhhh
Q 037392           54 SKKWVTWLIPCFVVANIAMFVITMYVNNCPKN-SVS----CVAR-FLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVV  127 (389)
Q Consensus        54 ~~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~-~~~----~~~~-~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~  127 (389)
                      ...+..|.+..+...|+..|+..++.++|++. .++    |... ++.+|+|++.++||..+|+..++..+++...+.++
T Consensus        35 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~  114 (316)
T KOG2289|consen   35 PRSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPV  114 (316)
T ss_pred             cchhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChh
Confidence            56678889999999999999999999999874 334    8777 99999999999999999999999999999999999


Q ss_pred             ccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHH
Q 037392          128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLG  207 (389)
Q Consensus       128 ~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg  207 (389)
                      +++|+||++|++|+|+|+.||++||+.|+++|..+|+++|.+|+.++|++||++|++++.+++++.++|||||++|||+|
T Consensus       115 ~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlg  194 (316)
T KOG2289|consen  115 HRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLG  194 (316)
T ss_pred             hhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhHH--HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhcccccchh
Q 037392          208 SMLSELITNWTIYTNKH--FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALS  285 (389)
Q Consensus       208 ~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~~~~~~~~~~~~~~~~~~  285 (389)
                      ++++++..||+.++.+.  +..+++++.+++.+|+.|.+|+++|+||++.|..+|+++..+++++|...+...    ...
T Consensus       195 A~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~----~~~  270 (316)
T KOG2289|consen  195 AHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV----LRV  270 (316)
T ss_pred             HHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEecccee----eec
Confidence            99999999999999776  777778889999999999999999999999999999999999999988654332    112


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeec
Q 037392          286 RRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVP  335 (389)
Q Consensus       286 ~~k~~~~~~~~~~~~~~~li~~~~~~~v~l~~~~~~~~~C~~C~y~~C~p  335 (389)
                      +.|++..|.+.|++..+.++++++++++.+|.+    ++|.||+++.|+|
T Consensus       271 ~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~  316 (316)
T KOG2289|consen  271 FSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP  316 (316)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence            566677777888888888999999999888877    7999999999987

>PTZ00101 rhomboid-1 protease; Provisional

Probab=100.00  E-value=8.6e-36  Score=285.35  Aligned_cols=186  Identities=28%  Similarity=0.518  Sum_probs=154.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhh
Q 037392           57 WVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLI  136 (389)
Q Consensus        57 ~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRll  136 (389)
                      ..+.++..++++|+++|+++...+.                       +..++|+.+.+..+|+++++.+.+ +||||++
T Consensus        51 ~i~~l~~~Iiii~iivfil~l~~~~-----------------------~~~l~p~~~~L~~~Ga~~~~~i~~-gq~WRLi  106 (278)
T PTZ00101         51 TWKSFIMAISIIQIIVFIISVSIKP-----------------------ADFLTPSDSLLVTLGANVASRIKQ-GEIHRLI  106 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcc-----------------------cccCCCCHHHHHHHhCcchhhhhc-CCCHHHH
Confidence            3677999999999999998876421                       224478889999999999988765 9999999


Q ss_pred             hhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhhh
Q 037392          137 TCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITN  216 (389)
Q Consensus       137 Ts~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~~  216 (389)
                      |++|+|.|+.|+++||+.++.+|..+|+.+|++|+.++|++||++|++++..+.+...++||||++||++|++++.++.+
T Consensus       107 T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~  186 (278)
T PTZ00101        107 LPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILL  186 (278)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988877789999999999999999888888


Q ss_pred             hhhhhhHH--HHHHHHHHHHHH--HHhh-cChhHHHHHHHHHHHHHHHHHHHhhc
Q 037392          217 WTIYTNKH--FLTLVVIIAINL--AVGI-LPHVDNFAHIGGFISGFLLGFVFLIR  266 (389)
Q Consensus       217 ~~~~~~~~--l~~l~~~~~~~~--~~g~-~p~v~~~aHlgG~l~G~l~g~~ll~~  266 (389)
                      |...+.+.  +..+++++++.+  .... .|++|++||+||+++|+++|+++.++
T Consensus       187 w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~  241 (278)
T PTZ00101        187 WHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQ  241 (278)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence            87655443  222222222222  2222 37899999999999999999987653

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-36  Score=294.59  Aligned_cols=197  Identities=31%  Similarity=0.610  Sum_probs=164.7

Q ss_pred             ccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHH
Q 037392          128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLG  207 (389)
Q Consensus       128 ~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg  207 (389)
                      .++|.|||+||.|+|+|++|++..|.+++.+-+.+|+..|+.|++++|++||+.||++|++|.|+.+.||.||+-||+++
T Consensus       447 ~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila  526 (652)
T KOG2290|consen  447 VPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILA  526 (652)
T ss_pred             ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhHH-HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhcccccchhh
Q 037392          208 SMLSELITNWTIYTNKH-FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSR  286 (389)
Q Consensus       208 ~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~  286 (389)
                      +.+++++.+|++...++ ...-++.+++.+..|++|++||+||+.|+++|++.+++++++..++..+.           .
T Consensus       527 ~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~-----------y  595 (652)
T KOG2290|consen  527 CLFVELFQSWQILERPWRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL-----------Y  595 (652)
T ss_pred             HHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhh-----------h
Confidence            99999999999999988 33333334444555999999999999999999999999999988886542           2


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeecCCCCCcCC
Q 037392          287 RKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRT  343 (389)
Q Consensus       287 ~k~~~~~~~~~~~~~~~li~~~~~~~v~l~~~~~~~~~C~~C~y~~C~p~~~~~c~~  343 (389)
                      +|+ .+    .+++. +++.++..+++++|++++.  .|+||.|+||+|+.+-+|.+
T Consensus       596 rKr-~~----ilIs~-ivf~~Lla~Lvv~fy~~~i--~cpWce~ltClP~~~~~~e~  644 (652)
T KOG2290|consen  596 RKR-FY----ILISQ-IVFSGLLAILVVVFYNYPI--DCPWCEHLTCLPFTDCFCEK  644 (652)
T ss_pred             hhH-HH----HHHHH-HHHHHHHHHHHHheeeccc--CCchhhhccccchhhhhhhh
Confidence            333 11    12222 2334555566677776655  79999999999999865543

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=5.2e-27  Score=225.21  Aligned_cols=175  Identities=20%  Similarity=0.229  Sum_probs=126.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhh
Q 037392           58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLIT  137 (389)
Q Consensus        58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllT  137 (389)
                      ..++|..++++|++||+++....+                               ..+..+.....+ ..+.+||||++|
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~-------------------------------~~~~~~l~~~~~-~~~~~q~WRl~T  140 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGD-------------------------------QTVMLWLAWPFD-PSLKFELWRYFT  140 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcc-------------------------------HHHHHHHhcccc-ccccCCcHHHHh
Confidence            444999999999999999876432                               111112222112 234699999999


Q ss_pred             hhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhhhh
Q 037392          138 CNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNW  217 (389)
Q Consensus       138 s~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~~~  217 (389)
                      ++|+|.|+.|+++||+++|.+|..+|+.+|++|++.+|+++++.|++++.++.+ ...+|+||++||++|+.........
T Consensus       141 ~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~~~p  219 (276)
T PRK10907        141 HALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGERDP  219 (276)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999888754 5689999999999997643221111


Q ss_pred             h--hh-hhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhh
Q 037392          218 T--IY-TNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLI  265 (389)
Q Consensus       218 ~--~~-~~~~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~  265 (389)
                      .  .. +...+..+++++++.+.-.+.++++|.||++|+++|+++|+..-+
T Consensus       220 ~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        220 QSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence            1  00 111122222222222222223689999999999999999987654

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.91  E-value=9.8e-24  Score=197.98  Aligned_cols=184  Identities=30%  Similarity=0.469  Sum_probs=135.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccC---Ccch
Q 037392           58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKH---QGWR  134 (389)
Q Consensus        58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~---q~wR  134 (389)
                      .++++..++++|+++|+...+......   ...                      ..+....+..+.......   |+||
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~w~   70 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAI---FLL----------------------TFLFRLFGLYPLNLLGALARDQLWR   70 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHH---HHH----------------------HHhhhHHhhcchhhhccccccchHH
Confidence            466999999999999999887643100   000                      000011112222222112   8999


Q ss_pred             hhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCc--cccCchHHHHHHHHHHHHH
Q 037392          135 LITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSN--ISVGASGALFGLLGSMLSE  212 (389)
Q Consensus       135 llTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~--~~vGaSGavfGllg~~~~~  212 (389)
                      ++|++|+|+|+.|+++||+.++.+|..+|+.+|+.|++.+|+++|+.+++.+..+.+..  +++||||++||+++++...
T Consensus        71 lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~  150 (228)
T COG0705          71 LITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLL  150 (228)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888765  7999999999999998654


Q ss_pred             Hhhhhhhhh-----hHHHHHHHHHHHHHHHHhhcC---hhHHHHHHHHHHHHHHHHHHHhhc
Q 037392          213 LITNWTIYT-----NKHFLTLVVIIAINLAVGILP---HVDNFAHIGGFISGFLLGFVFLIR  266 (389)
Q Consensus       213 ~~~~~~~~~-----~~~l~~l~~~~~~~~~~g~~p---~v~~~aHlgG~l~G~l~g~~ll~~  266 (389)
                      .........     .+....+.+.+..+++.+...   ++++.||++|++.|++++..+.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~  212 (228)
T COG0705         151 FPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRK  212 (228)
T ss_pred             ccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            332222111     222444444555555555543   799999999999999999887653

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.90  E-value=5.3e-24  Score=185.09  Aligned_cols=140  Identities=40%  Similarity=0.692  Sum_probs=107.9

Q ss_pred             ccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCc-cccCchHHHHHHH
Q 037392          128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSN-ISVGASGALFGLL  206 (389)
Q Consensus       128 ~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~-~~vGaSGavfGll  206 (389)
                      +++|+||++|+.|+|.|+.|+++|++.++.+|..+|+.+|+.++..+|+++++.++++..++.+.. +.+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            469999999999999999999999999999999999999999999999999999999999888776 8999999999999


Q ss_pred             HHHHHHHhhhhhhhhhHH--HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcc
Q 037392          207 GSMLSELITNWTIYTNKH--FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRP  267 (389)
Q Consensus       207 g~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~  267 (389)
                      ++.+.....+++....+.  .......+.+.+..+..+++++.+|++|+++|+++++.+.++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            998777766654443222  1111122334444455799999999999999999999988765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.63  E-value=4.5e-15  Score=138.82  Aligned_cols=137  Identities=21%  Similarity=0.323  Sum_probs=101.8

Q ss_pred             hhccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhhhhhcc---------Cccc
Q 037392          126 VVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFG-FIRVGLLYIISGFGGSLLSALFIQ---------SNIS  195 (389)
Q Consensus       126 v~~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G-~~r~~~lyl~sgi~g~l~s~l~~~---------~~~~  195 (389)
                      ...+.|.||++|++++|.+..|+++||+++|.+|..+|+.+| +.+++....+.++..+++..++..         ..-+
T Consensus        47 ~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a  126 (258)
T KOG2632|consen   47 LLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGA  126 (258)
T ss_pred             HhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccc
Confidence            445689999999999999999999999999999999999999 888888888777777776665431         1237


Q ss_pred             cCchHHHHHHHHHHHHHHhhhhhhhhhH--HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 037392          196 VGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFV  262 (389)
Q Consensus       196 vGaSGavfGllg~~~~~~~~~~~~~~~~--~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~  262 (389)
                      +|.||..|++++..-+..-...+...--  +...+..++.+....-+.|+.|..+|++|+++|+.+++.
T Consensus       127 ~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  127 IGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             ccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            9999999999997533211111000000  023334444444445567999999999999999999984

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.74  E-value=9e-09  Score=98.39  Aligned_cols=175  Identities=23%  Similarity=0.290  Sum_probs=115.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhhh
Q 037392           59 TWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITC  138 (389)
Q Consensus        59 p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllTs  138 (389)
                      +-++..++++|+++|..|....-          .+..+..|                   -..+   +.. ---|.++++
T Consensus       115 ~g~v~~ll~~n~~vf~lWrv~~~----------~~~~~~~m-------------------ls~~---~~~-t~~w~i~~s  161 (310)
T KOG2980|consen  115 NGVVFGLLIANAFVFTLWRVPQK----------QFTMIPWM-------------------LSRN---AYK-TGCWKIILS  161 (310)
T ss_pred             CcchhHHHHHHHHHHHHHHhcch----------hhhhhhHH-------------------hhcc---ccc-ccceeEEee
Confidence            44778899999999999887431          00000000                   0111   111 234669999


Q ss_pred             hhccccHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhhhhhhhh----ccCccccCchHHHHHHHHHHHHHH
Q 037392          139 NWLHGGVFHILANMLSLLVIGI-RLEQEFGFIRVGLLYIISGFGGSLLSALF----IQSNISVGASGALFGLLGSMLSEL  213 (389)
Q Consensus       139 ~FlH~~~~HLl~Nm~~l~~~G~-~lE~~~G~~r~~~lyl~sgi~g~l~s~l~----~~~~~~vGaSGavfGllg~~~~~~  213 (389)
                      .|.|.+..|+..||+.++.+.. .+.-..|...+..+|+.++..|..+...-    ....+.+||||+++++++.. ..+
T Consensus       162 ~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~-~~l  240 (310)
T KOG2980|consen  162 TFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALD-CTL  240 (310)
T ss_pred             hhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHH-hhc
Confidence            9999999999999999988887 78888899999999997777776554432    12456899999999999877 445


Q ss_pred             hhhhhhh-----hhHH--HHHHHHHHHHHHHHhhc--ChhHHHHHHHHHHHHHHHHHHHhhcc
Q 037392          214 ITNWTIY-----TNKH--FLTLVVIIAINLAVGIL--PHVDNFAHIGGFISGFLLGFVFLIRP  267 (389)
Q Consensus       214 ~~~~~~~-----~~~~--l~~l~~~~~~~~~~g~~--p~v~~~aHlgG~l~G~l~g~~ll~~~  267 (389)
                      +++-+.+     +.+.  -..+-+++..++....+  ..-|++||++|-+.|++.+.....+.
T Consensus       241 fP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri  303 (310)
T KOG2980|consen  241 FPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARI  303 (310)
T ss_pred             CcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHH
Confidence            5543332     1111  11111222222222222  35688899999999999998886644

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.20  E-value=1.2e-06  Score=71.85  Aligned_cols=59  Identities=22%  Similarity=0.353  Sum_probs=54.2

Q ss_pred             CcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 037392          131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALF  189 (389)
Q Consensus       131 q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~  189 (389)
                      +.|+++|+.|++.++..+++|.+.++..|+.+|+.+|+++++..+.+.++..+++..++
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~   65 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL   65 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence            78999999999999999999999999999999999999999998888888887766543

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.81  E-value=0.00019  Score=66.14  Aligned_cols=68  Identities=25%  Similarity=0.252  Sum_probs=51.8

Q ss_pred             ccchhhhccCCcchhhhhhhccccH-HHHHHHHHHHHHHHHHHHHHh-h-h-HHHHHHHHHHHHHhhhhhhh
Q 037392          121 LDVSKVVDKHQGWRLITCNWLHGGV-FHILANMLSLLVIGIRLEQEF-G-F-IRVGLLYIISGFGGSLLSAL  188 (389)
Q Consensus       121 ~~~~~v~~~~q~wRllTs~FlH~~~-~HLl~Nm~~l~~~G~~lE~~~-G-~-~r~~~lyl~sgi~g~l~s~l  188 (389)
                      ++++.+.++.|+||++|+.|.-++. .++++|++.++..+..+|+.. . + ..++...+.+++.-.+++.+
T Consensus        31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~  102 (197)
T PF04511_consen   31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLL  102 (197)
T ss_pred             ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5567777789999999999987655 699999999999999999983 2 2 45666656555555555543

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.79  E-value=0.00034  Score=65.35  Aligned_cols=101  Identities=20%  Similarity=0.141  Sum_probs=75.0

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcc
Q 037392           54 SKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGW  133 (389)
Q Consensus        54 ~~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~w  133 (389)
                      +....|.+|....++++++=++...-                           ++.|      .+-.++++.+.++.|+|
T Consensus         8 ~~~~iPpVTR~~~~~~v~tt~~~~l~---------------------------lIsP------~~l~~~p~Lv~kk~QiW   54 (239)
T KOG0858|consen    8 FYLQIPPVTRYYTTACVVTTLLVRLD---------------------------LISP------FQLYLNPELVFKKFQIW   54 (239)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHhhc---------------------------ccCc------hheEecHHHHHhHhHHH
Confidence            44557889999998888877765431                           1111      13345678899999999


Q ss_pred             hhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhhhhh
Q 037392          134 RLITCNWLHGG-VFHILANMLSLLVIGIRLEQEFG---FIRVGLLYIISGFGGSLLSA  187 (389)
Q Consensus       134 RllTs~FlH~~-~~HLl~Nm~~l~~~G~~lE~~~G---~~r~~~lyl~sgi~g~l~s~  187 (389)
                      |++|+.+.-.. -.|.++||+.++--.+.+|+-.=   +..|+.+.+.+++.-.+.+.
T Consensus        55 RliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   55 RLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999998865 58999999999999999998642   36777777777776654443

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=96.96  E-value=0.0018  Score=62.39  Aligned_cols=132  Identities=23%  Similarity=0.340  Sum_probs=90.7

Q ss_pred             CcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh--------hhcc----CccccCc
Q 037392          131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSA--------LFIQ----SNISVGA  198 (389)
Q Consensus       131 q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~--------l~~~----~~~~vGa  198 (389)
                      ..|+++|+.|+-.+++..+.|.+.+.+-|..+|+.+|...++..|.+.-..-+++..        ++..    ..+..|.
T Consensus        66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~  145 (326)
T KOG2890|consen   66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGT  145 (326)
T ss_pred             hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccc
Confidence            789999999999999999999999999999999999999998888655443333222        2221    2347899


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhHH---------HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhccC
Q 037392          199 SGALFGLLGSMLSELITNWTIYTNKH---------FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQ  268 (389)
Q Consensus       199 SGavfGllg~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~  268 (389)
                      .|.+.|++.++ -.+++...+...+.         +..+++.+++.+.     ....++.+.-+..|...++.+++.-+
T Consensus       146 ~gilaGilVa~-kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~-----~f~~f~~l~s~~~g~~~sWtYLRfyq  218 (326)
T KOG2890|consen  146 TGILAGILVAW-KQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSII-----TFLVFASLPSITFGVLVSWTYLRFYQ  218 (326)
T ss_pred             hHHHHHHHHHH-HHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHH-----HHHHhhhhHHHHHhhhhhhhhheecc
Confidence            99999999876 33444332111111         2222222222221     34667888888899999999886544

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.016  Score=54.86  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             hccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 037392          127 VDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALF  189 (389)
Q Consensus       127 ~~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~  189 (389)
                      ...+|+||++.+.|.-.+-..+.+-++.++.+ +.+||.+|+.||..+.+.+++.+.++...+
T Consensus        46 ~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il  107 (323)
T KOG4463|consen   46 EKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL  107 (323)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence            34489999999999999988888887766664 899999999999999999998887765544

>COG5291 Predicted membrane protein [Function unknown]

Probab=94.22  E-value=0.18  Score=47.59  Aligned_cols=82  Identities=15%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcch
Q 037392           55 KKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWR  134 (389)
Q Consensus        55 ~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wR  134 (389)
                      +.+.|++|..+..+..++-++...- .                      .||.          +.-...+..+++.||||
T Consensus        16 ~~~IPPITRy~~ll~~a~til~~~~-l----------------------vsPw----------y~ly~~pL~~k~~qiwR   62 (313)
T COG5291          16 MLRIPPITRYMTLLISAVTILVYVD-L----------------------VSPW----------YSLYYSPLFLKRLQIWR   62 (313)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHh-h----------------------cCcc----------ceeeechhHHHHHHHHH
Confidence            3347779988887777777665441 1                      1121          22334455677799999


Q ss_pred             hhhhhhcccc-HHHHHHHHHHHHHHHHHHHHH-hhhH
Q 037392          135 LITCNWLHGG-VFHILANMLSLLVIGIRLEQE-FGFI  169 (389)
Q Consensus       135 llTs~FlH~~-~~HLl~Nm~~l~~~G~~lE~~-~G~~  169 (389)
                      ++|+..+-++ -...++|+..++--.+.+|+- +|+.
T Consensus        63 lfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          63 LFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            9998776665 468999999999999999984 4443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	3e-42
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	2e-36

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  145 bits (368), Expect = 3e-42
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 124 SKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGS 183
           +      + WR I+   +H    HIL N+    + G  +E+ FG +++ +LY+++     
Sbjct: 42  AYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITG 101

Query: 184 LLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKH--FLTLVVIIAINLAVGIL 241
            +           G SG ++ +LG +      N  ++      F  L+V IA+     + 
Sbjct: 102 YVQNYV-SGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLF 160

Query: 242 -PHVDNFAHIGGFISGFLLGFVFLIRPQ 268
              + N AHI G I G + GF+     +
Sbjct: 161 GVEMGNAAHISGLIVGLIWGFIDSKLRK 188

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  130 bits (328), Expect = 2e-36
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 6/160 (3%)

Query: 107 LLGPSSVTLQKMGALDVSKVVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEF 166
            +      +  +          K + WR  T   +H  + HIL N+L    +G  +E+  
Sbjct: 22  QILGDQEVMLWLAW--PFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79

Query: 167 GFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGS--MLSELITNWTIYTNKH 224
           G  ++ ++ +IS      +   F       G SG ++ L+G   +  E      IY  + 
Sbjct: 80  GSGKLIVITLISALLSGYVQQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRG 138

Query: 225 FLTLVVIIAINLAVGIL-PHVDNFAHIGGFISGFLLGFVF 263
            +   +I  +     +    + N AHI G   G  + FV 
Sbjct: 139 LIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.96
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.96

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.96  E-value=4.9e-29  Score=224.98  Aligned_cols=175  Identities=19%  Similarity=0.219  Sum_probs=129.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhh
Q 037392           58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLIT  137 (389)
Q Consensus        58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllT  137 (389)
                      .|++|..++++|+++|+++.....                               +.+.++.+++++.+ +++||||++|
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~-------------------------------~~~~~~~~~~p~~~-~~~~~wrl~T   50 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGD-------------------------------QEVMLWLAWPFDPT-LKFEFWRYFT   50 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCH-------------------------------HHHHHHHSSCCSGG-GTTCTTHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCc-------------------------------HHHHHhhcCChhhc-cCCCCHHHHH
Confidence            355999999999999999876421                               11223334444433 4599999999


Q ss_pred             hhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhh--
Q 037392          138 CNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELIT--  215 (389)
Q Consensus       138 s~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~--  215 (389)
                      ++|+|.|+.|+++||+.++.+|..+|+.+|+.|++.+|++++++|++++.++.++. ++||||++||++++.......  
T Consensus        51 ~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~p  129 (181)
T 2xov_A           51 HALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERDP  129 (181)
T ss_dssp             GGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999999999999999999887654 999999999999987542211  


Q ss_pred             hhhh-hhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhh
Q 037392          216 NWTI-YTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLI  265 (389)
Q Consensus       216 ~~~~-~~~~~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~  265 (389)
                      +.+. .+.+......+.++..+...+.+++|+.||++|+++|+++++.+.+
T Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          130 QSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             GGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            1111 0112111222222222221123689999999999999999987653

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.96  E-value=3.5e-30  Score=235.39  Aligned_cols=179  Identities=19%  Similarity=0.288  Sum_probs=132.7

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcch
Q 037392           55 KKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWR  134 (389)
Q Consensus        55 ~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wR  134 (389)
                      +.+.|++|..++++|+++|+++....+                               +.+.++.++.++.+ .++||||
T Consensus         5 ~~~~~pvt~~li~~~v~vfll~~~~~~-------------------------------~~~~~~~~~~p~~~-~~~~~wr   52 (196)
T 2nr9_A            5 LAQQGKITLILTALCVLIYIAQQLGFE-------------------------------DDIMYLMHYPAYEE-QDSEVWR   52 (196)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHSCCCSGG-GGGCTTH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCc-------------------------------HHHHHhhcCCHhhc-ccCCcHH
Confidence            334566999999999999998765321                               12333444555544 4599999


Q ss_pred             hhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHh
Q 037392          135 LITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELI  214 (389)
Q Consensus       135 llTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~  214 (389)
                      ++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++|++|++++.++.++. ++||||++||++++.+..-.
T Consensus        53 l~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~  131 (196)
T 2nr9_A           53 YISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDK  131 (196)
T ss_dssp             HHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887655 99999999999997654322


Q ss_pred             hhhhh--hhhHHHHHHHHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHHhhc
Q 037392          215 TNWTI--YTNKHFLTLVVIIAINLAVG-ILPHVDNFAHIGGFISGFLLGFVFLIR  266 (389)
Q Consensus       215 ~~~~~--~~~~~l~~l~~~~~~~~~~g-~~p~v~~~aHlgG~l~G~l~g~~ll~~  266 (389)
                      .+.+.  .+.+....+.+.+++.+... ..+++|+.||+||+++|+++++.+.++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          132 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             SSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            22211  11111111111122222211 224899999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	389
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	1e-18
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	1e-16

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 80.9 bits (199), Expect = 1e-18
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 126 VVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLL 185
              K + WR  T   +H  + HIL N+L    +G  +E+  G  ++ ++ +IS      +
Sbjct: 39  PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYV 98

Query: 186 SALFIQSNISVGASGALFGLLGSMLSELITNWTIY---TNKHFLTLVVIIAINLAVGILP 242
              F       G SG ++ L+G +      +            +  ++ I          
Sbjct: 99  QQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGM 157

Query: 243 HVDNFAHIGGFISGFLLGFVF 263
            + N AHI G   G  + FV 
Sbjct: 158 SMANGAHIAGLAVGLAMAFVD 178

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 75.2 bits (184), Expect = 1e-16
 Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 126 VVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLL 185
                + WR I+   +H    HIL N+    + G  +E+ FG +++ +LY+++      +
Sbjct: 41  EEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYV 100

Query: 186 SALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKH--FLTLVVIIAINLAVGIL-P 242
              ++      G SG ++ +LG +      N  ++      F  L+V IA+     +   
Sbjct: 101 Q-NYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGV 159

Query: 243 HVDNFAHIGGFISGFLLGFVFLIRPQ 268
            + N AHI G I G + GF+     +
Sbjct: 160 EMGNAAHISGLIVGLIWGFIDSKLRK 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.95
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.95

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=3.3e-28  Score=218.70  Aligned_cols=175  Identities=19%  Similarity=0.308  Sum_probs=133.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhh
Q 037392           58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLIT  137 (389)
Q Consensus        58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllT  137 (389)
                      .+++|.+++++++++|+++....+                               +.+..+...+ .....++||||++|
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~~~~~~wrl~T   52 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFE-------------------------------DDIMYLMHYP-AYEEQDSEVWRYIS   52 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHSCC-CSGGGGGCTTHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcc-------------------------------HHHHHHHHcc-ccccccCchHHhHH
Confidence            345999999999999998765321                               2222333322 33445699999999


Q ss_pred             hhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhhhh
Q 037392          138 CNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNW  217 (389)
Q Consensus       138 s~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~~~  217 (389)
                      ++|+|.|+.|+++||+.++.+|..+|+.+|+.+++.+|+++++.|++++.++. ....+|+||++||++++.......++
T Consensus        53 ~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~-~~~~vGaSG~v~gl~~~~~~~~~~~~  131 (189)
T d2nr9a1          53 HTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS-GPAFFGLSGVVYAVLGYVFIRDKLNH  131 (189)
T ss_dssp             GGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-CSCCCCSHHHHHHHHHHHHHHHHSST
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC-CCCcccchHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999988775 45689999999999998766555555


Q ss_pred             hhhhhHH--HHHHHHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHHhh
Q 037392          218 TIYTNKH--FLTLVVIIAINLAVG-ILPHVDNFAHIGGFISGFLLGFVFLI  265 (389)
Q Consensus       218 ~~~~~~~--l~~l~~~~~~~~~~g-~~p~v~~~aHlgG~l~G~l~g~~ll~  265 (389)
                      .....+.  ...+++.+.+.+... ..+++|+.||++|+++|+++|++..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         132 HLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             TSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhccHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            4433222  222222222333322 23799999999999999999998754

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.3e-27  Score=209.48  Aligned_cols=173  Identities=19%  Similarity=0.208  Sum_probs=130.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhh
Q 037392           58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLIT  137 (389)
Q Consensus        58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllT  137 (389)
                      .+++|..++++|+++|++.....+                               +....+...+.+.+ .++||||++|
T Consensus         3 ~~pvT~~li~i~~~vf~~~~~~~~-------------------------------~~~~~~~~~~~~~~-~~g~~wrl~T   50 (180)
T d3b45a1           3 AGPVTWVMMIACVVVFIAMQILGD-------------------------------QEVMLWLAWPFDPT-LKFEFWRYFT   50 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCH-------------------------------HHHHHHHSSCCSGG-GTTCGGGGTG
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCc-------------------------------HHHHHHHcCCCccc-ccCchHHHHH
Confidence            455999999999999998765432                               23334444444444 4599999999


Q ss_pred             hhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhhhh
Q 037392          138 CNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNW  217 (389)
Q Consensus       138 s~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~~~  217 (389)
                      ++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.|++++.++.+ ...+|+||+++|+++........+.
T Consensus        51 ~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~-~~~~G~sg~i~~l~~~~~~~~~~~~  129 (180)
T d3b45a1          51 HALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSG-PWFGGLSGVVYALMGYVWLRGERDP  129 (180)
T ss_dssp             GGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhc-cccccccchHHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999999999999999999999999988875 5689999999999998765433332


Q ss_pred             hhhhh--HH-HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHH
Q 037392          218 TIYTN--KH-FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVF  263 (389)
Q Consensus       218 ~~~~~--~~-l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~l  263 (389)
                      .....  +. .....+...........+++|+.||++|+++|+++|++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         130 QSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             GGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            22111  11 122222222222222347899999999999999999874