Citrus Sinensis ID: 037477
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | 2.2.26 [Sep-21-2011] | |||||||
| Q9STK5 | 621 | Pentatricopeptide repeat- | yes | no | 0.959 | 0.987 | 0.544 | 0.0 | |
| Q9M891 | 665 | Pentatricopeptide repeat- | no | no | 0.951 | 0.914 | 0.298 | 4e-86 | |
| Q8LPF1 | 668 | Pentatricopeptide repeat- | no | no | 0.862 | 0.824 | 0.310 | 2e-83 | |
| Q9SI78 | 485 | Pentatricopeptide repeat- | no | no | 0.528 | 0.696 | 0.269 | 5e-29 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.660 | 0.827 | 0.241 | 2e-28 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.514 | 0.440 | 0.273 | 5e-28 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.497 | 0.530 | 0.259 | 6e-28 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.472 | 0.505 | 0.269 | 2e-27 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.472 | 0.504 | 0.269 | 4e-27 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.738 | 0.625 | 0.223 | 8e-27 |
| >sp|Q9STK5|PP269_ARATH Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/630 (54%), Positives = 455/630 (72%), Gaps = 17/630 (2%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINTCQKI 60
M RS A+LSSLR A S +S RS +R ++V F+++ S F I + +
Sbjct: 1 MYRSMAILSSLRHAYSQISTRSYLSR---SKV-------GFSSNLSSPLDSFAIVPSRFL 50
Query: 61 F----FSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFF 116
+ FS+ P+S L+L+L DWS E+E L + LTHE+ +YVLRKL+ PEKA F
Sbjct: 51 WKFRTFSSKPDSMLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFL 110
Query: 117 NWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK 176
+WV PS+ +YS+MLR LV + S+K+FW+TLR MK+ Y++E+TY +I G L K
Sbjct: 111 DWVLRDSGLSPSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSK 170
Query: 177 AKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVL 236
K +D A+ F++ M+KE AM VA + VV DW ++ ++L++MK+ LSDNFV+
Sbjct: 171 EKSKADAVAVAHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVI 230
Query: 237 TVLKELRIYPVKALGFFRWVGEHSG---YKHNTITYNGILRVLARHESVRDFWNVVEEMK 293
VLKELR +P+KAL FF WVG Y+H+T+TYN LRVLAR SV +FW+VV+EMK
Sbjct: 231 RVLKELREHPLKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMK 290
Query: 294 KEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353
GY+MD+DTYIK+SRQFQK RMM + VKL+E+MMDGP+KPS+QDCSLLLR +S NPD
Sbjct: 291 TAGYDMDLDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPD 350
Query: 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQ 413
L LVFRV+ KYES G SLSK+VYDGIHR+LT +GRFDEAE++ KAM+NAG+EPDNITYSQ
Sbjct: 351 LDLVFRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQ 410
Query: 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN 473
++FGLCKA R E+A VLD+ME GC PDIKTWTILIQGHC NE+D+AL CFA M+EK
Sbjct: 411 LVFGLCKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKG 470
Query: 474 YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEA 533
+D D++LLDVLI+GF+ + GA L+EM++ ++PWQ+T+K LI+KLL ++ EEA
Sbjct: 471 FDIDSNLLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEA 530
Query: 534 MNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE 593
++LL++MKKQNYP + E F Y++KFGT+EDA +FL LS K+ PS AAY V E+F+ E
Sbjct: 531 LDLLQMMKKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYRE 590
Query: 594 GRHYEAKDLLYKCPHHIRQDSKISLLFGSA 623
GR +AK+LL+ CPHH + KIS LFG+A
Sbjct: 591 GRLTDAKNLLFICPHHFKTHPKISELFGAA 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M891|PP208_ARATH Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 191/639 (29%), Positives = 337/639 (52%), Gaps = 31/639 (4%)
Query: 23 SSTRPLFTRVTHFFHISSFTASNQSHTSQ-FHINTCQKIFFSTSPNSS------------ 69
SS RP + + F IS+ T S S + F + Q +F SP +S
Sbjct: 15 SSPRPFLSHHSRFQVISNSTRSFSSFLHERFGVQQRQCLFALRSPLASSVSRRFSSESAI 74
Query: 70 ----------LELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWV 119
+++ + DE+ +L+ ++HE + VLR+L++ P+ A FF W
Sbjct: 75 EEKLPAETVVIDVFSRLNGKDEITKELDSNDVVISHELALRVLRELESSPDVAGRFFKWG 134
Query: 120 CDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKK 179
+ + SS Y+ MLR + +FW + MK+ + + KK
Sbjct: 135 LEAYPQKLSSKSYNTMLRIFGVNGLVDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGL 194
Query: 180 ASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVL 239
+DL L + + ++D V + +V+ W + K+L D+K+E + V VL
Sbjct: 195 ENDLERLKELFASGSMDNSVDKVCNRVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVL 254
Query: 240 KELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEM 299
++L + P KAL FFRW+ E +KH+ TYN + RVL + + + F +++EE++ GYEM
Sbjct: 255 EKLDVDPRKALLFFRWIDESGSFKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEM 314
Query: 300 DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK--PSVQDCSLLLRSISSINNPDLGLV 357
+++TY+++S +F + +M+++AV+LFEF M G P+ CSLLL+ I + D+ L
Sbjct: 315 EMETYVRVSARFCQTKMIKEAVELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLF 374
Query: 358 FRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFG 417
R Y GN + + + ++L + RF ++ +++KAM G+ P S + G
Sbjct: 375 TRTLKAYTGNGNVVPDVMLQHVLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASG 434
Query: 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD 477
L + G+ ++A +++ ME +G D K L++GHC A +++ A CF KM+ K +
Sbjct: 435 LSRKGKKDEANELVNFMEASGNHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSY 494
Query: 478 ADL-LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR-----RLE 531
A + L+ + + + YKL E++++ +L+PW +T+K ++ LL + E
Sbjct: 495 AGYAFEKLVLAYCNSFQARDVYKLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFE 554
Query: 532 EAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591
EA++LL +M+ +PPF +PF+ Y+S GT +A FLKA++ K++PS++ L+VFE+
Sbjct: 555 EALSLLPMMRNHGFPPFVDPFMDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAML 614
Query: 592 NEGRHYEAKDLLYKCPHHIRQDSKISLLFGSAKSNKVTI 630
RH EA+DLL P +IR+++++ LF + K K ++
Sbjct: 615 KSARHSEAQDLLSMSPSYIRRNAEVLELFNTMKPEKCSL 653
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPF1|PP387_ARATH Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana GN=At5g15980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/560 (31%), Positives = 304/560 (54%), Gaps = 9/560 (1%)
Query: 80 DELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNL 139
DE+ +LE ++ + + VLRKL+++P+ A +FF W+ + SS Y++MLR L
Sbjct: 101 DEIRKELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRIL 160
Query: 140 VNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAM 199
+ +FW + MK+ + + +K SDL L + + +
Sbjct: 161 GGNGLVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSA 220
Query: 200 DNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEH 259
+NV + +V+ +W D + K++ D+ +E + V +++ L + P KAL FFRW+ E
Sbjct: 221 ENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDES 280
Query: 260 SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMED 319
+KH+ TYN + RVL + + + F N+V EM+ GYE++I+TY+++S +F + +++++
Sbjct: 281 DLFKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKE 340
Query: 320 AVKLFEFMMDGPY---KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVY 376
AV LFE M G P+ LLL+ I + D+ L R Y GN+L+ S+
Sbjct: 341 AVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLL 400
Query: 377 DGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE 436
+ ++L + R +++ +++K MK G+ P S + L + G+ ++A +D ME
Sbjct: 401 KSVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMES 460
Query: 437 NGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLINGFLSQKRVN 495
+G D K L++G+C + +D AL+CF KM+ + AD + L+ + ++ +V
Sbjct: 461 SGNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVR 520
Query: 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR-----RLEEAMNLLRLMKKQNYPPFPE 550
AYKLL + K +L+P +T+K+L+ LL + EEA++LL +MK +PPF +
Sbjct: 521 DAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFID 580
Query: 551 PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHI 610
PF+ Y S G +A FLKA++ +P + L+VFE+ RH EA+DLL CP++I
Sbjct: 581 PFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYI 640
Query: 611 RQDSKISLLFGSAKSNKVTI 630
R + + LF + K N+ +
Sbjct: 641 RNNPDVLELFNTMKPNESAV 660
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 159/349 (45%), Gaps = 11/349 (3%)
Query: 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320
GY+ + +T + ++ + V D ++V +M++ G+ D+ Y I K ++ DA
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 193
Query: 321 VKLFEFM-MDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI 379
V+LF+ M DG +V SL+ S D + R + + N ++ + +
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT---FTAV 250
Query: 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC 439
K G+F EA K+ + M +PD TY+ +I GLC GR ++A +LD M GC
Sbjct: 251 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 310
Query: 440 IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499
+PD+ T+ LI G C + VD F +M ++ D + +I G+ R + A
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ- 369
Query: 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYI 556
E+ ++ RP T+ L+ L R+E+A+ L M+K + + +
Sbjct: 370 ---EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 426
Query: 557 SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605
K G VEDA + ++LS K S F R ++ DLLY+
Sbjct: 427 CKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 475
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 212/467 (45%), Gaps = 45/467 (9%)
Query: 179 KASDLAALNQFHDGMVK-EIAMDNVAKTLVDV--VLGSDWDDKIGKKLEDMKIELSDNFV 235
KAS+ FH V+ +++ ++ ++ + +L D K+ L + ++LS +
Sbjct: 38 KASNFTLYGSFHASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALI 97
Query: 236 LTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKE 295
VLK+L V AL F+W G+KH T YN ++ L + + + W++V++MK +
Sbjct: 98 EEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAK 157
Query: 296 GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS-SINNPDL 354
+ +T+ ISR++ + R +++A+ F M + +K D + +L ++S S N D
Sbjct: 158 KL-LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDA 216
Query: 355 GLVFRVANKYESLGNSLSKSVY-DGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQ 413
VF K + S ++ +G + L L R DE + MK+ GFEPD + Y
Sbjct: 217 QKVFDKMKKKRFEPDIKSYTILLEGWGQELNLL-RVDEVNR---EMKDEGFEPDVVAYGI 272
Query: 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN 473
+I CKA ++E+A +EME+ C P + LI G + +++ AL F +
Sbjct: 273 IINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSG 332
Query: 474 YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK----------------VRLR------ 511
+ +A + L+ + +R+ AYK + EM K +R++
Sbjct: 333 FPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAY 392
Query: 512 ---------PWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKF--- 559
P +T++ ++ RL+ A+ + MK + P F I+
Sbjct: 393 EVYQTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHE 452
Query: 560 GTVEDASEFL-KALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605
+++A E+ + L V P + ++ ++ +EGR + DL+ K
Sbjct: 453 NKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVK 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 157/336 (46%), Gaps = 7/336 (2%)
Query: 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320
G + N I+YN ++ L R +++ V+ EM + GY +D TY + + + K A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
Query: 321 VKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH 380
+ + M+ PSV + L+ S+ N + + F ++ G ++ Y +
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF--LDQMRVRGLCPNERTYTTLV 387
Query: 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI 440
++ G +EA ++++ M + GF P +TY+ +I G C G+ EDA VL++M+E G
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447
Query: 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL 500
PD+ +++ ++ G C + +VD AL +M+EK D LI GF Q+R A L
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 501 LVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFG 560
EM+ +V L P + T+ LI LE+A+ L M ++ P + I+
Sbjct: 508 YEEML-RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566
Query: 561 ----TVEDASEFLKALSVKEYPSSAAYLQVFESFFN 592
T E LK + PS Y + E+ N
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSN 602
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 163/327 (49%), Gaps = 9/327 (2%)
Query: 223 LEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV 282
L++MK++LS + ++ VL+ R A FF W E G+ H++ TYN ++ +LA+
Sbjct: 152 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 211
Query: 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342
+V+EEM +G + ++T+ + F + + AV +FE M +K V+ + L
Sbjct: 212 ETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 270
Query: 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSV--YDGIHRALTKLGRFDEAEKMMKAMK 400
L S+ LG +V ++ L + ++ Y + ++ EA ++ M
Sbjct: 271 L---DSLGRAKLGKEAQVL--FDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMI 325
Query: 401 NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460
+ G +PD + ++ ++ GL ++ + DA + M+ G P+++++TI+I+ C + ++
Sbjct: 326 DQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 385
Query: 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTL 520
A+ F M++ DA + LI GF +QK+++ Y+LL EM EK P T+ L
Sbjct: 386 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNAL 444
Query: 521 IEKLLGARRLEEAMNLLRLMKKQNYPP 547
I+ + + E A + M + P
Sbjct: 445 IKLMANQKMPEHATRIYNKMIQNEIEP 471
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 161/312 (51%), Gaps = 10/312 (3%)
Query: 223 LEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV 282
L++MK++LS + ++ VL+ R A FF W E G+ H++ TYN ++ +LA+
Sbjct: 151 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 210
Query: 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342
+V+EEM +G + ++T+ + F + + AV +FE M +K V+ + L
Sbjct: 211 ETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 269
Query: 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSV--YDGIHRALTKLGRFDEAEKMMKAMK 400
L S+ LG +V ++ L + ++ Y + ++ EA ++ M
Sbjct: 270 L---DSLGRAKLGKEAQVL--FDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMI 324
Query: 401 NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460
+ G +PD + ++ ++ GL ++ + DA + M+ G P+++++TI+I+ C + ++
Sbjct: 325 DHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 384
Query: 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTL 520
A+ F M++ DA + LI GF +QK+++ Y+LL EM EK P T+ L
Sbjct: 385 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNAL 443
Query: 521 IEKLLGARRLEE 532
I KL+ +++ E
Sbjct: 444 I-KLMANQKMPE 454
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 160/312 (51%), Gaps = 10/312 (3%)
Query: 223 LEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV 282
L++MK++LS + ++ VL+ R A FF W E G+ H + TYN ++ +LA+
Sbjct: 152 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQF 211
Query: 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342
+V+EEM +G + ++T+ + F + + AV +FE M +K V+ + L
Sbjct: 212 ETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 270
Query: 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSV--YDGIHRALTKLGRFDEAEKMMKAMK 400
L S+ LG +V ++ L + ++ Y + ++ EA ++ M
Sbjct: 271 L---DSLGRAKLGKEAQVL--FDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMI 325
Query: 401 NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460
+ G +PD + ++ ++ GL ++ + DA + M+ G P+++++TI+I+ C + ++
Sbjct: 326 DHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 385
Query: 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTL 520
A+ F M++ DA + LI GF +QK+++ Y+LL EM EK P T+ L
Sbjct: 386 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNAL 444
Query: 521 IEKLLGARRLEE 532
I KL+ +++ E
Sbjct: 445 I-KLMANQKMPE 455
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 114/511 (22%), Positives = 226/511 (44%), Gaps = 39/511 (7%)
Query: 114 AFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGV 173
+ +W+ D+ +P + Y+ ML LV+ +SLK ++ +M + T+ ++
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198
Query: 174 LKKAKK----------------ASDLAALNQFHDGMVKEIAMDNVAKTLVDVV-LGSDWD 216
L +A + D G ++E +D + +V G W
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWS 258
Query: 217 DKIGKKLEDMKIELSDNFVL-TVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRV 275
+ +S N ++ KE R+ AL F + + G+ + T+N ++
Sbjct: 259 N------------VSVNVIVHGFCKEGRVE--DALNFIQEMSNQDGFFPDQYTFNTLVNG 304
Query: 276 LARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPS 335
L + V+ +++ M +EGY+ D+ TY + K +++AV++ + M+ P+
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364
Query: 336 VQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395
+ L+ ++ N + +A S G ++ + + L A ++
Sbjct: 365 TVTYNTLISTLCKENQVEEAT--ELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 396 MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455
+ M++ G EPD TY+ +I LC G+ ++A N+L +ME +GC + T+ LI G C
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQA 515
AN+ A F +M ++ + LI+G +RV A +L+ +MI + + +P +
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ-KPDKY 541
Query: 516 TFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS---KFGTVEDASEFLKAL 572
T+ +L+ +++A ++++ M P + IS K G VE AS+ L+++
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 573 SVKEYP-SSAAYLQVFESFFNEGRHYEAKDL 602
+K + AY V + F + + EA +L
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINL 632
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| 255540497 | 627 | pentatricopeptide repeat-containing prot | 0.979 | 0.998 | 0.661 | 0.0 | |
| 225456884 | 631 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.995 | 0.651 | 0.0 | |
| 449440630 | 632 | PREDICTED: pentatricopeptide repeat-cont | 0.967 | 0.977 | 0.621 | 0.0 | |
| 356564958 | 635 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.984 | 0.600 | 0.0 | |
| 297819444 | 618 | pentatricopeptide repeat-containing prot | 0.959 | 0.991 | 0.551 | 0.0 | |
| 15228363 | 621 | pentatricopeptide repeat-containing prot | 0.959 | 0.987 | 0.544 | 0.0 | |
| 224133698 | 476 | predicted protein [Populus trichocarpa] | 0.682 | 0.915 | 0.671 | 0.0 | |
| 356563135 | 635 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.979 | 0.515 | 0.0 | |
| 115442501 | 573 | Os01g0970900 [Oryza sativa Japonica Grou | 0.824 | 0.919 | 0.495 | 1e-151 | |
| 125529279 | 573 | hypothetical protein OsI_05381 [Oryza sa | 0.824 | 0.919 | 0.493 | 1e-151 |
| >gi|255540497|ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550428|gb|EEF51915.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/629 (66%), Positives = 507/629 (80%), Gaps = 3/629 (0%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINTCQKI 60
MNR++ +L SLRL+N LLS R S+TRP T+VTHFF F + S+TS + +N +K+
Sbjct: 1 MNRARTILVSLRLSNFLLSTRISTTRPFLTQVTHFF--PCFLSREHSYTSDY-VNIHKKL 57
Query: 61 FFSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVC 120
+ S+ P+S +EL+ DWS ELE +LE SP LTHE+V+YVL+KLD DP KA FFNWVC
Sbjct: 58 YSSSKPSSLVELLSVNDWSPELETQLENSSPLLTHETVIYVLKKLDKDPHKAWDFFNWVC 117
Query: 121 DKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKA 180
D+ F+PSS +YSLMLR LV KDS+K FW+TLR+MKE Y +EETYL+ILGV +K +
Sbjct: 118 DRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMD 177
Query: 181 SDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLK 240
SD A F D MV+E AMD+V K +V VV ++W +++ K+LE M I L+DNFV+ VLK
Sbjct: 178 SDAVAFKHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLK 237
Query: 241 ELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD 300
ELR YP+KAL FF W G+ Y+ NTITYN I RVL R +S+ +FW+VVEEMK G+EMD
Sbjct: 238 ELRNYPLKALQFFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMD 297
Query: 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRV 360
IDTYIKISRQFQK ++M DAVKL+EFMMDGP+KPSVQDCS+LLRSIS+ N PDL LVFRV
Sbjct: 298 IDTYIKISRQFQKNKLMGDAVKLYEFMMDGPFKPSVQDCSMLLRSISASNYPDLNLVFRV 357
Query: 361 ANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420
NKYE+ GNSLSK+VYDGIHR+LT +G FDEA KMMK M+ AG+EPDNITYSQ++FGLCK
Sbjct: 358 VNKYEATGNSLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCK 417
Query: 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL 480
A R E+AC VLDEME +GC+PDIKTWTILIQGHC ANEV +AL+C AKMMEK+ D DADL
Sbjct: 418 ARRLEEACEVLDEMEAHGCLPDIKTWTILIQGHCVANEVGKALMCLAKMMEKHCDPDADL 477
Query: 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540
L VLIN FLSQKR++GAY L ++M++K RLRPWQAT+K LIEKLL R+LEEA+NLLRLM
Sbjct: 478 LAVLINAFLSQKRIDGAYTLFMDMVDKARLRPWQATYKLLIEKLLEVRKLEEALNLLRLM 537
Query: 541 KKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK 600
K+ N+PPFPEPFVQYIS+FGTV+DA++FLKALSVKEYPS++AYL VF+SFF GRH EAK
Sbjct: 538 KQHNHPPFPEPFVQYISRFGTVDDAADFLKALSVKEYPSTSAYLNVFQSFFRAGRHSEAK 597
Query: 601 DLLYKCPHHIRQDSKISLLFGSAKSNKVT 629
DLL+KCPHHIR+ KIS LFGSAK+ T
Sbjct: 598 DLLFKCPHHIRKHPKISELFGSAKTEDAT 626
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456884|ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/629 (65%), Positives = 504/629 (80%), Gaps = 1/629 (0%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINTCQKI 60
MNR+KA+L S+R NS S + L +VT S + SNQS+TS F K+
Sbjct: 1 MNRAKAILFSIRFTNSFRSTQFRRASSLCYQVTQSSRFSP-SFSNQSYTSAFPYILYGKL 59
Query: 61 FFSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVC 120
FFS+ PNS +EL+L DWSDELE++LE+ S LTHE+V+YVL+KLD DP++ FFNWV
Sbjct: 60 FFSSKPNSIVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVT 119
Query: 121 DKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKA 180
+K FRPSS +YSL+LR+LV+ +S+KQFWVT+R+MKE I++ETYL+ILGV KK K A
Sbjct: 120 EKNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMA 179
Query: 181 SDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLK 240
S+ AL F++ MV+E AMD V K +V++V S W ++ KKL ++K SDNFVL VL+
Sbjct: 180 SEEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLR 239
Query: 241 ELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD 300
ELR YP+KAL FF+WVGE GY+H++ITYN I RVL R +S+ +FW++VEEMK +G+EMD
Sbjct: 240 ELRGYPLKALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMD 299
Query: 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRV 360
IDTYIKISRQFQK +M+EDAVKL+E MMDGPYKPSVQDC++LLRSIS +NPDL LVFRV
Sbjct: 300 IDTYIKISRQFQKNKMLEDAVKLYEIMMDGPYKPSVQDCTMLLRSISLSSNPDLALVFRV 359
Query: 361 ANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420
KYE++GNSL K+VYDGIHR+LT +GRFDEA K+M++M++AG EPDNITYSQ+++GLCK
Sbjct: 360 TEKYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCK 419
Query: 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL 480
A + E+AC +LDEME GC+PDIKTWTILIQGHCAA EVD+AL+CFAKMMEKN DADADL
Sbjct: 420 ARKLEEACKLLDEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKMMEKNCDADADL 479
Query: 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540
L+VLINGFLSQKR++GAYKLLVEM+ L PWQAT+K +I KLLG R+LEEA+NLL LM
Sbjct: 480 LEVLINGFLSQKRIDGAYKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLEEAINLLHLM 539
Query: 541 KKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK 600
KKQNYPPFPEPF++YISKFGTVEDA EFL ALS K+YPS +AY+ VFESFF EGR EAK
Sbjct: 540 KKQNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKKYPSQSAYVHVFESFFQEGRESEAK 599
Query: 601 DLLYKCPHHIRQDSKISLLFGSAKSNKVT 629
DLLYKCPHHIR+ I LFGSAKS T
Sbjct: 600 DLLYKCPHHIRKHPDICKLFGSAKSEYAT 628
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440630|ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Cucumis sativus] gi|449524136|ref|XP_004169079.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/626 (62%), Positives = 492/626 (78%), Gaps = 8/626 (1%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINTCQKI 60
M R A+ +SLRLANS S RS P TR F SS+ S+QS S F IN +
Sbjct: 1 MTRRNAIFTSLRLANSFFSTRSR--YPQVTR----FSPSSY-VSHQSLVSHFTINH-PVL 52
Query: 61 FFSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVC 120
FFS++P S L+L+ DWS+ LE +LE L+P LTHE+VVYVL++LD P+KAS FFNW
Sbjct: 53 FFSSNPQSLLQLVSTNDWSEMLETELETLNPTLTHETVVYVLKRLDKQPQKASEFFNWAS 112
Query: 121 DKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKA 180
K SS++YS++LR V +S+K FW+TLR MKE Y++EETY +ILGVL+K+KKA
Sbjct: 113 GKNGSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKA 172
Query: 181 SDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLK 240
+D L F++ M+++ AMD+V + +VD+VLGSDW + + KLE++ I LSDNFV+ VLK
Sbjct: 173 ADATGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLK 232
Query: 241 ELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD 300
ELR P+KAL FF WVG Y HNT++YN I RVL R +S+ FW V+EEMK +E+D
Sbjct: 233 ELRNSPLKALSFFHWVGCRPDYDHNTVSYNAIARVLGRDDSIEAFWGVIEEMKHANHEID 292
Query: 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRV 360
IDTYIKISRQFQK +MM +AVKL+E MMDGPYKPS+QDCS+LLR+I++ +NPDL LV+RV
Sbjct: 293 IDTYIKISRQFQKSKMMGEAVKLYELMMDGPYKPSLQDCSVLLRTIAASDNPDLSLVYRV 352
Query: 361 ANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420
A K+E+ G SLSK++YDGIHR+LT G+FD+AE ++K+M+NAG+EPDN+TYSQ++FGLCK
Sbjct: 353 AKKFEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCK 412
Query: 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL 480
A R E+A VLDEME GCIPDIKTWTILIQGHC ANE+D AL+CFAKM+EKN D DADL
Sbjct: 413 ARRLEEARKVLDEMEAQGCIPDIKTWTILIQGHCNANELDIALVCFAKMIEKNCDPDADL 472
Query: 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540
LDVLI+GFL+QK++NGAY+LL+E+ K +RPWQAT+K LI+ LL R+LEEA+ LLRLM
Sbjct: 473 LDVLISGFLNQKKLNGAYQLLIELTNKAHVRPWQATYKQLIKNLLEVRKLEEAIALLRLM 532
Query: 541 KKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK 600
KKQNYPPFPEPFVQYISKFGTV+DA +FLK LS KEYPS +AYL +F SFFNEGR+ EAK
Sbjct: 533 KKQNYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEYPSVSAYLHIFNSFFNEGRYSEAK 592
Query: 601 DLLYKCPHHIRQDSKISLLFGSAKSN 626
DLL+KCPHHIR+ +++ LFGSA+SN
Sbjct: 593 DLLFKCPHHIRKHNEVCKLFGSAESN 618
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564958|ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/631 (60%), Positives = 480/631 (76%), Gaps = 6/631 (0%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINTCQKI 60
MNR KA+ SSLR S L+ R TR +VTHF + ++SH +F I T K+
Sbjct: 1 MNRVKAIASSLRTLESSLATRVLVTR---NQVTHFSLHNPLPLFDRSHHLRFPI-THHKL 56
Query: 61 FFSTSP--NSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNW 118
+FST P NS +EL+L DWS LE KLE P + HE+V+YV+++LD +PEKAS FFNW
Sbjct: 57 YFSTKPKPNSIVELLLTNDWSQALELKLENRFPSMPHETVLYVIKRLDKNPEKASCFFNW 116
Query: 119 VCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAK 178
VC K FRPS +VYSL++R L KD++KQFWVTLR MKE+ +++EETYL+I K+ K
Sbjct: 117 VCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREK 176
Query: 179 KASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTV 238
SD AL F++ M++E AM +V +V ++ S+W D++ +L ++I+LSDNFV+ V
Sbjct: 177 MDSDSVALTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRV 236
Query: 239 LKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYE 298
LKELR P+KA FF WVG+ SGY+H+T+TYN + RVL R ES+ +FW+V+EEMK+ G+E
Sbjct: 237 LKELRKTPLKAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKRVGHE 296
Query: 299 MDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVF 358
+DIDTYIKI+RQ Q+ RMMEDAVKL+E MMDG KP VQDC++LL+SIS+ + P+L LVF
Sbjct: 297 LDIDTYIKITRQLQRNRMMEDAVKLYELMMDGSCKPLVQDCNMLLKSISANDKPNLDLVF 356
Query: 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL 418
RVA KYES G++LSK++YDGIHR+LT G FDEAE +++ M+NAG+EPDNITYSQ++FGL
Sbjct: 357 RVAKKYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGL 416
Query: 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478
CK RFE+AC VL++ME + CIPDIKTWTILIQGHC+ANEVD+ALLCFAKM+EK D DA
Sbjct: 417 CKMRRFEEACKVLEDMESSRCIPDIKTWTILIQGHCSANEVDKALLCFAKMIEKGCDPDA 476
Query: 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538
DLLDVL +GFLSQKR+ GAY+L+ E+ K R+ PWQAT+K LIEKLLG + EEA+ LLR
Sbjct: 477 DLLDVLADGFLSQKRIEGAYELVAEISRKCRISPWQATYKKLIEKLLGVMKFEEALELLR 536
Query: 539 LMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYE 598
LMK NYPP+ PFV YISKFG+VEDA FLKALSVK YPS Y+QVFES F EGR E
Sbjct: 537 LMKSHNYPPYHLPFVPYISKFGSVEDAEAFLKALSVKSYPSHIVYVQVFESLFREGRLSE 596
Query: 599 AKDLLYKCPHHIRQDSKISLLFGSAKSNKVT 629
AKDLLYK PHHIR SKI LFGS+++ T
Sbjct: 597 AKDLLYKTPHHIRTHSKICKLFGSSETKSDT 627
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819444|ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323443|gb|EFH53864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/627 (55%), Positives = 457/627 (72%), Gaps = 14/627 (2%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINT---C 57
M RSKA+LSSLR A S +S RS +R F++++ S F I +
Sbjct: 1 MYRSKAILSSLRNAYSQISTRSYLSRAQV----------GFSSNSISPLDSFAIPSRFLW 50
Query: 58 QKIFFSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFN 117
+ FS+ P+S+L+L+L DWS E+E L + LTHE+ +YVLRKL+ PEKA F +
Sbjct: 51 KFRTFSSKPDSTLQLVLENDWSKEVEEGLRKPDLSLTHETAIYVLRKLEKYPEKAYYFLD 110
Query: 118 WVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKA 177
WV PS+ +YS+MLR LV + S+K+FW+TL MK+ Y++E+TY +I G L K
Sbjct: 111 WVLRDSGLSPSTPLYSIMLRILVQQRSMKRFWMTLSEMKQGGFYLDEDTYKTIYGELNKE 170
Query: 178 KKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLT 237
K +D A+ F++ M+KE AM VA + VV DW ++ ++L++M + LSDNFV+
Sbjct: 171 KSKADAVAVAHFYERMLKENAMSVVAGDVSAVVTKVDWSCEVERELQEMNLVLSDNFVIR 230
Query: 238 VLKELRIYPVKALGFFRWVG-EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEG 296
VLKELR +P+KAL FF WVG SGY+H+T+TYN LRVLAR SV +FW+VV+EMK G
Sbjct: 231 VLKELREHPLKALAFFHWVGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAG 290
Query: 297 YEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGL 356
+EMD+DTYIK+SRQFQK RM+ + VKL+E+MMDGP+KPS+QDCSLLLR +S+ NPDL L
Sbjct: 291 HEMDLDTYIKVSRQFQKSRMITETVKLYEYMMDGPFKPSIQDCSLLLRYLSARPNPDLDL 350
Query: 357 VFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIF 416
VFRV+ KYES G SLSK+VYDGIHR+LT +GRFDEAE++ KAM+NAG+EPDNITYSQ++F
Sbjct: 351 VFRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVF 410
Query: 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA 476
GLCKA R E+A VLD+ME GC PDIKTWTILIQGHC NE+DRAL CFA M+EK +D
Sbjct: 411 GLCKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDRALACFANMLEKGFDI 470
Query: 477 DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNL 536
D++LLDVLI+GFL Q R+ GA L+EM++ ++PWQ+T+K LI+KLL ++ +EA++L
Sbjct: 471 DSNLLDVLIDGFLIQNRIEGASIFLMEMVKNANVKPWQSTYKRLIDKLLEIKKGKEALDL 530
Query: 537 LRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRH 596
L+LMKKQNYP + E F Y++KFGT+EDA +FL LS K+ PS AAY V E+F+ EGR
Sbjct: 531 LQLMKKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRL 590
Query: 597 YEAKDLLYKCPHHIRQDSKISLLFGSA 623
+AK+LL+ CPHH + KIS LFG+A
Sbjct: 591 TDAKNLLFICPHHFKTHPKISELFGAA 617
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228363|ref|NP_190408.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207690|sp|Q9STK5.1|PP269_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48250, chloroplastic; Flags: Precursor gi|4678363|emb|CAB41173.1| putative protein [Arabidopsis thaliana] gi|332644870|gb|AEE78391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/630 (54%), Positives = 455/630 (72%), Gaps = 17/630 (2%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINTCQKI 60
M RS A+LSSLR A S +S RS +R ++V F+++ S F I + +
Sbjct: 1 MYRSMAILSSLRHAYSQISTRSYLSR---SKV-------GFSSNLSSPLDSFAIVPSRFL 50
Query: 61 F----FSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFF 116
+ FS+ P+S L+L+L DWS E+E L + LTHE+ +YVLRKL+ PEKA F
Sbjct: 51 WKFRTFSSKPDSMLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFL 110
Query: 117 NWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK 176
+WV PS+ +YS+MLR LV + S+K+FW+TLR MK+ Y++E+TY +I G L K
Sbjct: 111 DWVLRDSGLSPSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSK 170
Query: 177 AKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVL 236
K +D A+ F++ M+KE AM VA + VV DW ++ ++L++MK+ LSDNFV+
Sbjct: 171 EKSKADAVAVAHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVI 230
Query: 237 TVLKELRIYPVKALGFFRWVGEHSG---YKHNTITYNGILRVLARHESVRDFWNVVEEMK 293
VLKELR +P+KAL FF WVG Y+H+T+TYN LRVLAR SV +FW+VV+EMK
Sbjct: 231 RVLKELREHPLKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMK 290
Query: 294 KEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353
GY+MD+DTYIK+SRQFQK RMM + VKL+E+MMDGP+KPS+QDCSLLLR +S NPD
Sbjct: 291 TAGYDMDLDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPD 350
Query: 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQ 413
L LVFRV+ KYES G SLSK+VYDGIHR+LT +GRFDEAE++ KAM+NAG+EPDNITYSQ
Sbjct: 351 LDLVFRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQ 410
Query: 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN 473
++FGLCKA R E+A VLD+ME GC PDIKTWTILIQGHC NE+D+AL CFA M+EK
Sbjct: 411 LVFGLCKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKG 470
Query: 474 YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEA 533
+D D++LLDVLI+GF+ + GA L+EM++ ++PWQ+T+K LI+KLL ++ EEA
Sbjct: 471 FDIDSNLLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEA 530
Query: 534 MNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE 593
++LL++MKKQNYP + E F Y++KFGT+EDA +FL LS K+ PS AAY V E+F+ E
Sbjct: 531 LDLLQMMKKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYRE 590
Query: 594 GRHYEAKDLLYKCPHHIRQDSKISLLFGSA 623
GR +AK+LL+ CPHH + KIS LFG+A
Sbjct: 591 GRLTDAKNLLFICPHHFKTHPKISELFGAA 620
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133698|ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/475 (67%), Positives = 392/475 (82%)
Query: 155 MKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSD 214
MKE+ YI+EETYL+I+G+ KK K A+D+AAL F+D M+ E A DNV K +V ++L +
Sbjct: 1 MKEEGFYIDEETYLTIMGICKKEKMANDVAALKHFYDRMIDENAKDNVVKDVVRIILERE 60
Query: 215 WDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILR 274
W+ ++ KKL M+I L+DNFV+ VLKELR YPVKAL FF+WV GY+HNT+TYN ++R
Sbjct: 61 WNKEVEKKLVGMRIVLTDNFVIRVLKELRSYPVKALRFFQWVDRREGYQHNTVTYNALVR 120
Query: 275 VLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKP 334
VL R +S+ +FW+VV+EMK GYEMDIDTYIKISRQFQK ++MEDAV+L+EFMMDGP+KP
Sbjct: 121 VLGRDDSIGEFWSVVDEMKNAGYEMDIDTYIKISRQFQKIKLMEDAVRLYEFMMDGPFKP 180
Query: 335 SVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEK 394
SVQDC +LLRS+++ +NPDL LV RV + Y++ GNSLSKSVYDG+HR+ T G+FDEAEK
Sbjct: 181 SVQDCYILLRSVAASDNPDLDLVSRVVDGYKATGNSLSKSVYDGMHRSFTSAGKFDEAEK 240
Query: 395 MMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454
++KAM++AG+EPDNITYSQ++FGLCK+ R E+AC VLDEME GCIPDIKTWTILIQGH
Sbjct: 241 IVKAMRDAGYEPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWTILIQGHF 300
Query: 455 AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ 514
AAN+VD+ LLC KM EKN D DADLLDVL+ GFLSQ++++GAY LVEM+ K+RL PWQ
Sbjct: 301 AANQVDKGLLCLVKMTEKNTDPDADLLDVLVKGFLSQRKMDGAYTFLVEMVNKLRLVPWQ 360
Query: 515 ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSV 574
AT+K LIEKLL R+LEEA +LLRLMKK NYPPFPEPF QYISKFGTVEDA F K LSV
Sbjct: 361 ATYKLLIEKLLQVRKLEEATDLLRLMKKHNYPPFPEPFDQYISKFGTVEDAVNFFKVLSV 420
Query: 575 KEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSAKSNKVT 629
KEYPSS AYL++ +SF EGR EA+DLL+KCPHHIR+D KIS LFGSAK+ T
Sbjct: 421 KEYPSSVAYLRMLDSFLREGRDSEARDLLFKCPHHIRKDHKISKLFGSAKTGDKT 475
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563135|ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/633 (51%), Positives = 443/633 (69%), Gaps = 11/633 (1%)
Query: 1 MNRSKAVLSSLRLANSLLSIRSSSTRPLF---TRVTHFFHISSFTASNQSHTSQFHI-NT 56
MNR +A++ +LR S L+ R ++TR L +VTHF + + SH F + N
Sbjct: 1 MNRLRAIVVNLRFLESPLASRVTATRSLLLTRNQVTHFSLCTPSPLLDNSH--HFLLPNI 58
Query: 57 CQKIFFSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFF 116
Q ++FS+ PNS +EL+L DWS LE +LE+ P +THE+VVYVL++++ +PEKA FF
Sbjct: 59 HQNLYFSSKPNSIVELVLTSDWSKGLEQELEKCYPSMTHETVVYVLKRMEANPEKAWCFF 118
Query: 117 NWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK 176
NWV K+ +RPSS++Y L+LR L ++++K FW+TLR MK Y +EE Y IL K+
Sbjct: 119 NWVSAKEWYRPSSSLYGLILRVLATEETIKLFWITLRTMKTKGFYFDEEMYFPILAGFKR 178
Query: 177 AKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVL 236
D +L +F+ ++E AM V +VD++ GS+W D++ L ++I +SDNFV
Sbjct: 179 KNMNKDRVSLTRFYSQGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKLEIRMSDNFVT 238
Query: 237 TVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEG 296
VLKELR P+KA FF WVG+ SGY+H+T+TYN I RVLA +S+ FW+V+EEMK G
Sbjct: 239 RVLKELRNCPLKAYEFFNWVGKQSGYEHDTVTYNAIARVLASTDSIEKFWSVIEEMKSVG 298
Query: 297 YEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGL 356
+E+DIDTYIKIS++ QK +MMEDAVKL+E MDG YKPSV+DCSLLL+SIS+ ++P+L L
Sbjct: 299 HELDIDTYIKISKKLQKNKMMEDAVKLYELTMDGSYKPSVKDCSLLLKSISASDDPNLDL 358
Query: 357 VFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIF 416
VFRV+ KYES ++LSK++YDGIHR+L+ G+ DEAE ++ M+NAG+EPDNITY+Q IF
Sbjct: 359 VFRVSKKYESTWHTLSKAIYDGIHRSLSGAGKLDEAESIVNHMRNAGYEPDNITYNQTIF 418
Query: 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA 476
G CK + ++AC VL+EME G IP+IKTWTILIQGHC ANEVDRALLC +M+EK +A
Sbjct: 419 GFCKMRKLDEACKVLEEMESCGFIPEIKTWTILIQGHCVANEVDRALLCLNRMIEKGCNA 478
Query: 477 DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNL 536
DA +L VLI FL QKR++ AYKLLVE++ K P T+ LI+ LLG +LEEA++L
Sbjct: 479 DAAVLGVLIGSFLGQKRIDDAYKLLVEIVSKHGTSPRHGTYAKLIDNLLGIGKLEEALDL 538
Query: 537 LRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYP-SSAAYLQVFESFFNEGR 595
LM+ + P EPFVQYISKFG++EDA +FLK+ K P S + Y +VF+S GR
Sbjct: 539 HCLMRNHEFTPIIEPFVQYISKFGSIEDAIKFLKS---KGTPRSHSVYFRVFKSLLGNGR 595
Query: 596 HYEAKDLLYKCPHHIRQDSKISLLFGSAKSNKV 628
+AKDLL K P +I + KI LF S ++ V
Sbjct: 596 LSDAKDLLSKIP-YISKRKKILELFSSMENCTV 627
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115442501|ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group] gi|15289974|dbj|BAB63669.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza sativa Japonica Group] gi|113535061|dbj|BAF07444.1| Os01g0970900 [Oryza sativa Japonica Group] gi|125573469|gb|EAZ14984.1| hypothetical protein OsJ_04919 [Oryza sativa Japonica Group] gi|215678751|dbj|BAG95188.1| unnamed protein product [Oryza sativa Japonica Group] gi|215693250|dbj|BAG88632.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/539 (49%), Positives = 366/539 (67%), Gaps = 12/539 (2%)
Query: 96 ESVVYVLRKLDNDPEKASAFFNWVCDKKQFRP-SSTVYSLMLRNLVNK--DSLKQFWVTL 152
ESV+Y LR L DP A AFF + P S Y+LMLR L + + FW L
Sbjct: 30 ESVLYSLRTLSKDPSVALAFFRR--SQAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFL 87
Query: 153 RRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVL- 211
R M + I++ TYL+ L KKA +D A+L + ++ D V
Sbjct: 88 RDMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEDAKGGTPTSAAADAVRA 147
Query: 212 ---GSDWDD--KIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNT 266
GSD D ++ +KLE + + L++ V VL+E+R +P+KAL FFRW G GYKH +
Sbjct: 148 LEDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGS 207
Query: 267 ITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEF 326
++YN ++RVL R ES+R+FW++++EMK +G +DIDTY+K+SRQFQK M+ +AV+L+E
Sbjct: 208 VSYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYEL 267
Query: 327 MMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL 386
MMDGPYKPS QD +L+R I+ +PDL LV+RV K+E++ +K V+DGIHRALT
Sbjct: 268 MMDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSN 327
Query: 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTW 446
GRFDEA +++K MK G +PDNITYSQ+IFGLCKA RF++A LDEME GC+PD+KTW
Sbjct: 328 GRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTW 387
Query: 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506
T+LIQGHCAA EV++AL F +M+EKN +ADA LLDV++ G S +++ +Y VEM++
Sbjct: 388 TMLIQGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVD 447
Query: 507 KVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDAS 566
K L PWQ T+K +I +LL ++LEEA+ LLR MK + +PPF +PF +I+K+GT +DA
Sbjct: 448 KANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDAR 507
Query: 567 EFLKALSV-KEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSAK 624
+FLKAL+V +YPS AYL VF+SFF EGR+ EA+DLLYKCP HIR+ ++ LF S K
Sbjct: 508 QFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIK 566
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125529279|gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/539 (49%), Positives = 366/539 (67%), Gaps = 12/539 (2%)
Query: 96 ESVVYVLRKLDNDPEKASAFFNWVCDKKQFRP-SSTVYSLMLRNLVNK--DSLKQFWVTL 152
ESV+Y LR L DP A AFF + P S Y+LMLR L + + FW L
Sbjct: 30 ESVLYSLRTLSKDPSVALAFFRR--SQAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFL 87
Query: 153 RRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVL- 211
R M + I++ TYL+ L KKA +D A+L + ++ D V
Sbjct: 88 RDMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEDAKGGTPTSAAADAVRA 147
Query: 212 ---GSDWDD--KIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNT 266
GSD D ++ +KLE + + L++ V VL+E+R +P+KAL FFRW G GYKH +
Sbjct: 148 LEDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGS 207
Query: 267 ITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEF 326
++YN ++RVL R ES+R+FW++++EMK +G +DIDTY+K+SRQFQK M+ +AV+L+E
Sbjct: 208 VSYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYEL 267
Query: 327 MMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL 386
MMDGPYKPS QD +L+R I+ +PDL LV+RV K+E++ +K V+DGIHRALT
Sbjct: 268 MMDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSN 327
Query: 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTW 446
GRFDEA +++K MK G +PDNITYSQ+IFGLCKA RF++A LDEME GC+PD+KTW
Sbjct: 328 GRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTW 387
Query: 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506
T+LIQGHCAA EV++AL F +M+EKN +ADA LLDV++ G S +++ +Y VEM++
Sbjct: 388 TMLIQGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVD 447
Query: 507 KVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDAS 566
K L PWQ T+K +I +LL ++LEEA+ LLR MK + +PPF +PF +I+K+GT +DA
Sbjct: 448 KANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDAR 507
Query: 567 EFLKALSV-KEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSAK 624
+F+KAL+V +YPS AYL VF+SFF EGR+ EA+DLLYKCP HIR+ ++ LF S K
Sbjct: 508 QFVKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIK 566
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| TAIR|locus:2101190 | 621 | BIR6 "Buthionine sulfoximine-i | 0.879 | 0.904 | 0.555 | 2.1e-171 | |
| TAIR|locus:2076854 | 665 | AT3G02490 "AT3G02490" [Arabido | 0.860 | 0.827 | 0.301 | 6.3e-76 | |
| TAIR|locus:2146072 | 668 | AT5G15980 "AT5G15980" [Arabido | 0.888 | 0.850 | 0.291 | 5.7e-75 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.514 | 0.440 | 0.267 | 6.7e-27 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.541 | 0.678 | 0.257 | 8.5e-27 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.532 | 0.371 | 0.258 | 9.4e-27 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.527 | 0.694 | 0.26 | 9e-26 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.577 | 0.616 | 0.236 | 1.6e-25 | |
| TAIR|locus:2164300 | 1030 | AT5G06400 "AT5G06400" [Arabido | 0.633 | 0.393 | 0.234 | 2.5e-25 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.577 | 0.617 | 0.242 | 3.4e-25 |
| TAIR|locus:2101190 BIR6 "Buthionine sulfoximine-insensitive roots 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
Identities = 314/565 (55%), Positives = 412/565 (72%)
Query: 62 FSTSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCD 121
FS+ P+S L+L+L DWS E+E L + LTHE+ +YVLRKL+ PEKA F +WV
Sbjct: 56 FSSKPDSMLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLR 115
Query: 122 KKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVXXXXXXXX 181
PS+ +YS+MLR LV + S+K+FW+TLR MK+ Y++E+TY +I G
Sbjct: 116 DSGLSPSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKA 175
Query: 182 XXXXXNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKE 241
F++ M+KE AM VA + VV DW ++ ++L++MK+ LSDNFV+ VLKE
Sbjct: 176 DAVAVAHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKE 235
Query: 242 LRIYPVKALGFFRWVG---EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYE 298
LR +P+KAL FF WVG SGY+H+T+TYN LRVLAR SV +FW+VV+EMK GY+
Sbjct: 236 LREHPLKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYD 295
Query: 299 MDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCXXXXXXXXXXNNPDLGLVF 358
MD+DTYIK+SRQFQK RMM + VKL+E+MMDGP+KPS+QDC NPDL LVF
Sbjct: 296 MDLDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVF 355
Query: 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL 418
RV+ KYES G SLSK+VYDGIHR+LT +GRFDEAE++ KAM+NAG+EPDNITYSQ++FGL
Sbjct: 356 RVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGL 415
Query: 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478
CKA R E+A VLD+ME GC PDIKTWTILIQGHC NE+D+AL CFA M+EK +D D+
Sbjct: 416 CKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDS 475
Query: 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538
+LLDVLI+GF+ + GA L+EM++ ++PWQ+T+K LI+KLL ++ EEA++LL+
Sbjct: 476 NLLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQ 535
Query: 539 LMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYE 598
+MKKQNYP + E F Y++KFGT+EDA +FL LS K+ PS AAY V E+F+ EGR +
Sbjct: 536 MMKKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTD 595
Query: 599 AKDLLYKCPHHIRQDSKISLLFGSA 623
AK+LL+ CPHH + KIS LFG+A
Sbjct: 596 AKNLLFICPHHFKTHPKISELFGAA 620
|
|
| TAIR|locus:2076854 AT3G02490 "AT3G02490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 169/560 (30%), Positives = 300/560 (53%)
Query: 80 DELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNL 139
DE+ +L+ ++HE + VLR+L++ P+ A FF W + + SS Y+ MLR
Sbjct: 95 DEITKELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIF 154
Query: 140 VNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVXXXXXXXXXXXXXNQ-FHDGMVKEIA 198
+ +FW + MK+ + + + F G + +
Sbjct: 155 GVNGLVDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDN-S 213
Query: 199 MDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGE 258
+D V + +V+ W + K+L D+K+E + V VL++L + P KAL FFRW+ E
Sbjct: 214 VDKVCNRVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDE 273
Query: 259 HSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMME 318
+KH+ TYN + RVL + + + F +++EE++ GYEM+++TY+++S +F + +M++
Sbjct: 274 SGSFKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIK 333
Query: 319 DAVKLFEFMMDGPYK--PSVQDCXXXXXXXXXXNNPDLGLVFRVANKYESLGNSLSKSVY 376
+AV+LFEF M G P+ C D+ L R Y GN + +
Sbjct: 334 EAVELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVML 393
Query: 377 DGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE 436
+ ++L + RF ++ +++KAM G+ P S + GL + G+ ++A +++ ME
Sbjct: 394 QHVLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEA 453
Query: 437 NGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLINGFLSQKRVN 495
+G D K L++GHC A +++ A CF KM+ K + A + L+ + + +
Sbjct: 454 SGNHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQAR 513
Query: 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLG---ARR--LEEAMNLLRLMKKQNYPPFPE 550
YKL E++++ +L+PW +T+K ++ LL AR EEA++LL +M+ +PPF +
Sbjct: 514 DVYKLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVD 573
Query: 551 PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHI 610
PF+ Y+S GT +A FLKA++ K++PS++ L+VFE+ RH EA+DLL P +I
Sbjct: 574 PFMDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYI 633
Query: 611 RQDSKISLLFGSAKSNKVTI 630
R+++++ LF + K K ++
Sbjct: 634 RRNAEVLELFNTMKPEKCSL 653
|
|
| TAIR|locus:2146072 AT5G15980 "AT5G15980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 168/577 (29%), Positives = 300/577 (51%)
Query: 63 STSPNSSLELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDK 122
S++ + +++ DE+ +LE ++ + + VLRKL+++P+ A +FF W+ +
Sbjct: 84 SSAEATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEA 143
Query: 123 KQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVXXXXXXXXX 182
SS Y++MLR L + +FW + MK+ + +
Sbjct: 144 SPEELSSKNYNMMLRILGGNGLVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESD 203
Query: 183 XXXXNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKEL 242
+ + + +NV + +V+ +W D + K++ D+ +E + V +++ L
Sbjct: 204 LLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERL 263
Query: 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDID 302
+ P KAL FFRW+ E +KH+ TYN + RVL + + + F N+V EM+ GYE++I+
Sbjct: 264 DVEPRKALLFFRWIDESDLFKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIE 323
Query: 303 TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPS--VQDCX-XXXXXXXXXNNPDLGLVFR 359
TY+++S +F + +++++AV LFE M G + C D+ L R
Sbjct: 324 TYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSR 383
Query: 360 VANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLC 419
Y GN+L+ S+ + ++L + R +++ +++K MK G+ P S + L
Sbjct: 384 AVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLS 443
Query: 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADAD 479
+ G+ ++A +D ME +G D K L++G+C + +D AL+CF KM+ + AD
Sbjct: 444 RKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYAD 503
Query: 480 L-LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG---ARR--LEEA 533
+ L+ + ++ +V AYKLL + K +L+P +T+K+L+ LL AR EEA
Sbjct: 504 YSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEA 563
Query: 534 MNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE 593
++LL +MK +PPF +PF+ Y S G +A FLKA++ +P + L+VFE+
Sbjct: 564 LSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKS 623
Query: 594 GRHYEAKDLLYKCPHHIRQDSKISLLFGSAKSNKVTI 630
RH EA+DLL CP++IR + + LF + K N+ +
Sbjct: 624 ARHSEAQDLLSLCPNYIRNNPDVLELFNTMKPNESAV 660
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 6.7e-27, Sum P(2) = 6.7e-27
Identities = 90/336 (26%), Positives = 155/336 (46%)
Query: 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320
G + N I+YN ++ L R +++ V+ EM + GY +D TY + + + K A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
Query: 321 VKLFEFMMDGPYKPSVQDCXXXXXXXXXXNNPDLGLVFRVANKYESLGNSLSKSVYDGIH 380
+ + M+ PSV N + + F ++ G ++ Y +
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF--LDQMRVRGLCPNERTYTTLV 387
Query: 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI 440
++ G +EA ++++ M + GF P +TY+ +I G C G+ EDA VL++M+E G
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447
Query: 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL 500
PD+ +++ ++ G C + +VD AL +M+EK D LI GF Q+R A L
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 501 LVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYIS 557
EM+ +V L P + T+ LI LE+A+ L M ++ P + + ++
Sbjct: 508 YEEML-RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566
Query: 558 KFGTVEDASEFLKALSVKE-YPSSAAYLQVFESFFN 592
K +A L L +E PS Y + E+ N
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSN 602
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 8.5e-27, P = 8.5e-27
Identities = 92/357 (25%), Positives = 169/357 (47%)
Query: 189 FHDGMVK-EIAMDNVAKTLVDV--VLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIY 245
FH V+ +++ ++ ++ + +L D K+ L + ++LS + VLK+L
Sbjct: 48 FHASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNA 107
Query: 246 PVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI 305
V AL F+W G+KH T YN ++ L + + + W++V++MK + + +T+
Sbjct: 108 GVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFA 166
Query: 306 KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCXXXXXXXXXXNNP-DLGLVFRVANKY 364
ISR++ + R +++A+ F M + +K D N D VF K
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226
Query: 365 ESLGNSLSKSVY-DGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423
+ S ++ +G + L L R DE + MK+ GFEPD + Y +I CKA +
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLL-RVDEVNR---EMKDEGFEPDVVAYGIIINAHCKAKK 282
Query: 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDV 483
+E+A +EME+ C P + LI G + +++ AL F + + +A +
Sbjct: 283 YEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNA 342
Query: 484 LINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540
L+ + +R+ AYK + EM K + P T+ ++ L+ +R +EA + + M
Sbjct: 343 LVGAYCWSQRMEDAYKTVDEMRLK-GVGPNARTYDIILHHLIRMQRSKEAYEVYQTM 398
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 91/352 (25%), Positives = 166/352 (47%)
Query: 258 EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMM 317
E +G K N TY ++ L ++ +M ++G ++ TY + + K M+
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 318 EDAVKLFEFMMDGPYKPSVQDCXXXXXXXXXXN-NPDLGLVFRVANKYESLGNSLS-KSV 375
EDAV + E M P+ + N + +G++ ++ + + L + ++ S+
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLER-KVLPDVVTYNSL 468
Query: 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435
DG R+ G FD A +++ M + G PD TY+ +I LCK+ R E+AC++ D +E
Sbjct: 469 IDGQCRS----GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE 524
Query: 436 ENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN 495
+ G P++ +T LI G+C A +VD A L KM+ KN ++ + LI+G + ++
Sbjct: 525 QKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLK 584
Query: 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQY 555
A LL E + K+ L+P +T LI +LL + A + + M P + +
Sbjct: 585 EA-TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643
Query: 556 ISKF---GTVEDASEFLKALSVKEY-PSSAAYLQVFESFFNEGRHYEAKDLL 603
I + G + DA + + + P Y + + + + G+ A D+L
Sbjct: 644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVL 695
|
|
| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 9.0e-26, P = 9.0e-26
Identities = 91/350 (26%), Positives = 159/350 (45%)
Query: 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320
GY+ + +T + ++ + V D ++V +M++ G+ D+ Y I K ++ DA
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 193
Query: 321 VKLFEFM-MDGPYKPSVQDCXXXXXXXXXXNNPDLGLVFRVANKYESLGNSLSKSVYDGI 379
V+LF+ M DG +V D + R + + N ++ + +
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT---FTAV 250
Query: 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC 439
K G+F EA K+ + M +PD TY+ +I GLC GR ++A +LD M GC
Sbjct: 251 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 310
Query: 440 IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499
+PD+ T+ LI G C + VD F +M ++ D + +I G+ R + A +
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQE 370
Query: 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYI 556
+ M + +R T+ L+ L R+E+A+ L M+K + + +
Sbjct: 371 IFSRMDSRPNIR----TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 426
Query: 557 SKFGTVEDASEFLKALSVKEY-PSSAAYLQVFESFFNEGRHYEAKDLLYK 605
K G VEDA + ++LS K P +Y + F + R ++ DLLY+
Sbjct: 427 CKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRK-RQWDKSDLLYR 475
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 91/384 (23%), Positives = 179/384 (46%)
Query: 223 LEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV 282
L++MK++LS + ++ VL+ R A FF W E G+ H++ TYN ++ +LA+
Sbjct: 152 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 211
Query: 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ--DCX 340
+V+EEM +G + ++T+ + F + + AV +FE M +K V+ +C
Sbjct: 212 ETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 270
Query: 341 XXXXXXXXXNNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400
L ++ ++ N ++ +V + ++ EA ++ M
Sbjct: 271 LDSLGRAKLGKEAQVLFDKLKERFTP--NMMTYTV---LLNGWCRVRNLIEAARIWNDMI 325
Query: 401 NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460
+ G +PD + ++ ++ GL ++ + DA + M+ G P+++++TI+I+ C + ++
Sbjct: 326 DQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 385
Query: 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTL 520
A+ F M++ DA + LI GF +QK+++ Y+LL EM EK P T+ L
Sbjct: 386 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNAL 444
Query: 521 IEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKAL---SVKE- 576
I+ + + E A + M + P F + + + E +A+ +K+
Sbjct: 445 IKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNY-EMGRAVWEEMIKKG 503
Query: 577 -YPSSAAYLQVFESFFNEGRHYEA 599
P +Y + EG+ EA
Sbjct: 504 ICPDDNSYTVLIRGLIGEGKSREA 527
|
|
| TAIR|locus:2164300 AT5G06400 "AT5G06400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 97/414 (23%), Positives = 177/414 (42%)
Query: 198 AMDNVAKTLVDVVLGS--DWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRW 255
A+D + + VL S DW+ + + LE ++ + V+ VL+ +I L FF W
Sbjct: 609 AVDKMDVQEICRVLSSSRDWE-RTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSW 667
Query: 256 VGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR 315
VG+ +GYKHN+ YN ++V + + ++ EM+++G + DT+ + Q+ +
Sbjct: 668 VGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTG 727
Query: 316 MMEDAVKLFEFMMDGPYKPSVQDCXXXXXXXXXXNNPDLGLVFRVANKYESLGNSLSKSV 375
+ A++ F+ M D PS ++ R + G + +
Sbjct: 728 LTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREMIRSGFVPDREL 787
Query: 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435
L ++G +A+ + ++ GF P + YS I LC+ G+ E+A + L E
Sbjct: 788 VQDYLGCLCEVGNTKDAKSCLDSLGKIGF-PVTVAYSIYIRALCRIGKLEEALSELASFE 846
Query: 436 ENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN 495
+ D T+ ++ G ++ +AL M E + LI F +K++
Sbjct: 847 GERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLE 906
Query: 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP-FP--EPF 552
+ +M E P T+ +I + ++EEA N R M+++ P F F
Sbjct: 907 KVLETCQKM-EGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKF 965
Query: 553 VQYISKFGTVEDASEFLKALSVKEY-PSSAAYLQVFESFFNEGRHYEAKDLLYK 605
+ + + EDA + L + K PS+ + VF EG+H A+ L K
Sbjct: 966 INCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLARIALQK 1019
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 3.4e-25, P = 3.4e-25
Identities = 93/384 (24%), Positives = 179/384 (46%)
Query: 223 LEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV 282
L++MK++LS + ++ VL+ R A FF W E G+ H++ TYN ++ +LA+
Sbjct: 151 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 210
Query: 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ--DCX 340
+V+EEM +G + ++T+ + F + + AV +FE M +K V+ +C
Sbjct: 211 ETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 269
Query: 341 XXXXXXXXXNNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400
L ++ ++ N ++ +V + ++ EA ++ M
Sbjct: 270 LDSLGRAKLGKEAQVLFDKLKERFTP--NMMTYTV---LLNGWCRVRNLIEAARIWNDMI 324
Query: 401 NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460
+ G +PD + ++ ++ GL ++ + DA + M+ G P+++++TI+I+ C + ++
Sbjct: 325 DHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 384
Query: 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTL 520
A+ F M++ DA + LI GF +QK+++ Y+LL EM EK P T+ L
Sbjct: 385 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNAL 443
Query: 521 IEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKAL---SVKE- 576
I+ + + E + M + P F I K V E +A+ +K+
Sbjct: 444 IKLMANQKMPEHGTRIYNKMIQNEIEPSIHTF-NMIMKSYFVARNYEMGRAVWDEMIKKG 502
Query: 577 -YPSSAAYLQVFESFFNEGRHYEA 599
P +Y + +EG+ EA
Sbjct: 503 ICPDDNSYTVLIRGLISEGKSREA 526
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9STK5 | PP269_ARATH | No assigned EC number | 0.5444 | 0.9593 | 0.9871 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 639 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 2e-14
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454
PD +TY+ +I G CK G+ E+A + +EM++ G P++ T++ILI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 2e-09
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435
G +PD +TY+ +I GLC+AGR ++A +LDEME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420
K G+ +EA K+ MK G +P+ TYS +I GLCK
Sbjct: 11 DGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 54/347 (15%)
Query: 269 YNGILRVLARHESVRDFWNVVEEMKKEG-YEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327
YN +LR ++D +++E+M+K G +MD + K + +K R +++A + + +
Sbjct: 377 YNRLLR----DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 328 MDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG 387
+ P++ ++L+ S+ + ++ D+ RV + G +Y + K G
Sbjct: 433 RN----PTLSTFNMLM-SVCA-SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE---------------------- 425
+ D ++ M NAG E + T+ +I G +AG+
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 426 ---DAC----------NVLDEM--EENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470
AC +VL EM E + PD T L++ A +VDRA + +
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 471 EKNYDADADLLDVLINGFLSQK-RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529
E N ++ + +N SQK + A + +M +K ++P + F L++ A
Sbjct: 607 EYNIKGTPEVYTIAVN-SCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGD 664
Query: 530 LEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKE 576
L++A +L+ +KQ V Y S G +A + KAL + E
Sbjct: 665 LDKAFEILQDARKQGIKL---GTVSYSSLMGACSNAKNWKKALELYE 708
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI 443
+TY+ +I GLCKAGR E+A + EM+E G PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488
PD+ T+ LI G+C +V+ AL F +M ++ + +LI+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 36/203 (17%)
Query: 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAG--FEPDNITYSQVIFGLCKAGRFEDACNVLD 432
V++ + A + G D A ++ MK +PD+IT ++ AG+ + A V
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 433 EMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492
+ E + +TI + + D AL + M +K D L++
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 493 RVNGAYKLLVEM----------------------------------IEKVRLRPWQATFK 518
++ A+++L + I+ ++LRP +T
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 519 TLIEKLLGARRLEEAMNLLRLMK 541
LI L +L +A+ +L MK
Sbjct: 724 ALITALCEGNQLPKALEVLSEMK 746
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGC 439
+TY+ +I G CKAG+ E+A + EM+E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTY 304
+ +TYN ++ + V + + EMKK G + ++ TY
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 437 NGCIPDIKTWTILIQGHCAANEVDRALLCFAKM 469
G PD+ T+ LI G C A VD A+ +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI 440
R ++L + A++ + GF D + + ++ K GR EDA NV D M I
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD-ADLLDVL----INGFLSQKRVN 495
+W LI G+ +A+ F +M+ + + L VL +G Q
Sbjct: 393 ----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ---- 444
Query: 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR-RLEEAMNLLR 538
+++ M E R++P + +IE LLG L+EA ++R
Sbjct: 445 -GWEIFQSMSENHRIKPRAMHYACMIE-LLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441
TY+ ++ L KAG + A VL+EM+ +G P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 370 SLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429
+L S YD + A L + + ++++GFEPD ++V+ K G DA
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179
Query: 430 VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485
+ DEM E ++ +W +I G A A F +M E DA+ V++
Sbjct: 180 LFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
|
Length = 697 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (94), Expect = 0.001
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435
+ L LG+++EA ++++ +PD + L + G +E+A + ++
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 436 ENGCIPDIKTWTILIQG--HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493
E + +L G A + AL K ++ N D DA+ L L +L +
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217
Query: 494 VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544
A + + +E L+ LG R EEA+ L + +
Sbjct: 218 YEEALEYYEKALELDPDNAEALYNLALLLLELG--RYEEALEALEKALELD 266
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 381 RALTKLGRFDEAEKMMKAMKNAGFEPD 407
L K GR +EA ++ K MK G EPD
Sbjct: 8 DGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 267 ITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDI 301
+TYN ++ L + V + + +EMK+ G E D+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478
T+ LI G C A V+ AL F +M E+ + D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.61 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.36 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.35 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.34 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.29 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.28 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.2 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.19 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.98 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.86 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.82 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.79 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.75 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.67 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.66 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.57 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.55 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.48 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.43 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.36 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.32 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.3 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.3 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.16 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.06 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.06 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.02 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.01 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.98 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.95 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.94 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.9 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.9 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.89 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.88 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.79 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.75 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.7 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.64 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.47 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.23 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.09 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.02 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.97 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.93 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.93 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.91 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.87 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.84 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.83 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.67 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.29 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.15 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.99 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.95 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.83 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.68 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.65 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.43 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.43 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.36 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.19 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.93 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.87 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.81 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.8 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.78 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.77 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.66 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.06 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.17 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.15 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.1 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.1 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.98 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.96 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.87 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.86 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.85 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.82 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.46 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.02 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 91.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.74 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.69 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 91.5 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.43 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 90.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.69 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.54 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.13 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.05 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.01 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.83 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.77 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.68 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.01 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 87.98 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.93 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 87.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.72 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 87.58 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.33 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 86.92 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.81 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.37 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.29 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.17 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.15 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 84.91 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.62 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 84.17 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.08 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 83.76 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.53 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.23 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.22 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.76 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.84 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.6 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=572.33 Aligned_cols=500 Identities=15% Similarity=0.143 Sum_probs=417.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+++|+.|.+ ||+.+||+||.+|++.|++++|+.+|++|...|+.||..||+++|++|+..+++ ..
T Consensus 134 ~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~---~~ 205 (857)
T PLN03077 134 FGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL---AR 205 (857)
T ss_pred CCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch---hh
Confidence 6899999999999987 899999999999999999999999999999999999999999999999988754 45
Q ss_pred HHHHHHHHhhhccchh--HHHHHHHHHhcCCchHHHHHHHhhcc--CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCC
Q 037477 186 LNQFHDGMVKEIAMDN--VAKTLVDVVLGSDWDDKIGKKLEDMK--IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSG 261 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~ 261 (639)
+.+++..+.+.+..++ +++.++.+|+++|..+.+.+.|++|. ...+|+.++..+.+ .+..++|+++|++|. ..|
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~-~g~~~eAl~lf~~M~-~~g 283 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-NGECLEGLELFFTMR-ELS 283 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHh-CCCHHHHHHHHHHHH-HcC
Confidence 6788999998886665 78999999999999999999999997 45799999999988 588999999999996 678
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHH
Q 037477 262 YKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSL 341 (639)
Q Consensus 262 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (639)
+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999988988888888888888888888888888888875 367777888
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 037477 342 LLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA 421 (639)
Q Consensus 342 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 421 (639)
++.+|++.+. .+.+..++.+|.+.|..||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||++|++.
T Consensus 360 li~~~~~~g~--~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 360 MISGYEKNGL--PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 8877777663 55777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKM-------------------------------- 469 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m-------------------------------- 469 (639)
|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 777777777766654 34445555555555555555555555555
Q ss_pred --HHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037477 470 --MEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 470 --~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (639)
.+.|+.+|..++++||++|+++|++++|+++|+.+ .||..+|++||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44455555555556666777777777777777665 5789999999999999999999999999999999999
Q ss_pred ChHhHHHHH---hhcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhc
Q 037477 548 FPEPFVQYI---SKFGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGS 622 (639)
Q Consensus 548 ~~~~~~~ll---~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~ 622 (639)
|..||..++ ++.|++++|.++|+.|.+. ..|+..+|++++++|++.|++++|.+++++|+..+....|.+++.+|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 999999887 4679999999999999843 78999999999999999999999999999999888888899999999
Q ss_pred cCCCcccCC
Q 037477 623 AKSNKVTIP 631 (639)
Q Consensus 623 ~~~~~~~~~ 631 (639)
..+++.++.
T Consensus 668 ~~~~~~e~~ 676 (857)
T PLN03077 668 RIHRHVELG 676 (857)
T ss_pred HHcCChHHH
Confidence 888877643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=541.66 Aligned_cols=492 Identities=12% Similarity=0.154 Sum_probs=446.0
Q ss_pred CCChHHHHHHHHHHhhcCC-CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQ-FRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
.|++++|+++|++|.+ .| +.++...++.++..|.+.|.+++|+.+|+.|.. ||..||+.+|.+|++.|+++++
T Consensus 383 ~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A- 456 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGA- 456 (1060)
T ss_pred CcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHH-
Confidence 5899999999999998 55 457888899999999999999999999999985 9999999999999999877665
Q ss_pred HHHHHHHHHhhhccchh--HHHHHHHHHhcCCchHHHHHHHhhcc------CcCCHHHHHHHHHHhccChHHHHHHHHHH
Q 037477 185 ALNQFHDGMVKEIAMDN--VAKTLVDVVLGSDWDDKIGKKLEDMK------IELSDNFVLTVLKELRIYPVKALGFFRWV 256 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~A~~~f~~~ 256 (639)
.++|..|.+.+..++ +++.++.+|++.|..+.+.+.+++|. ...+++.++..+... ++.++|+++|+.|
T Consensus 457 --~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~lf~~M 533 (1060)
T PLN03218 457 --LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFGAYGIM 533 (1060)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 677888988887665 78999999999999999999998884 346788888888874 8899999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 037477 257 GEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKK--EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKP 334 (639)
Q Consensus 257 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 334 (639)
. ..|+.||..+||.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 534 ~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 534 R-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred H-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 5 689999999999999999999999999999999986 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 037477 335 SVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQV 414 (639)
Q Consensus 335 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 414 (639)
+..+|+.+|.+|++.+ +.+.+..++..|.+.|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|
T Consensus 613 ~~~tynsLI~ay~k~G--~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKG--DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred ChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999987 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhCCCCCChHh
Q 037477 495 NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG----A-------------------RRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
++|.++|++|.+. |+.||..+|++++..|.+ + +..++|..+|++|.+.|+.||..|
T Consensus 771 e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 771 DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999987 999999999999876432 1 224679999999999999999999
Q ss_pred HHHHH---hhcCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccC
Q 037477 552 FVQYI---SKFGTVEDASEFLKALSVK-EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQ 612 (639)
Q Consensus 552 ~~~ll---~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 612 (639)
|..++ ++.+..+.+..+++.|... ..++..+|++|++++.+. .++|..++++|...+..
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 99888 3446778888888877755 788999999999998432 36899999998554433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-63 Score=548.91 Aligned_cols=498 Identities=15% Similarity=0.141 Sum_probs=462.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037477 97 SVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK 176 (639)
Q Consensus 97 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~ 176 (639)
.++..+.+ +|+++.|.++|+.|.+ ||+.+||+||.+|++.|++++|+.+|++|.+.|+.||..||+++|.+|++
T Consensus 227 ~Li~~y~k-~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 227 ALITMYVK-CGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HHHHHHhc-CCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 33444444 6899999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHHHHHHHhhhccchh--HHHHHHHHHhcCCchHHHHHHHhhcc--CcCCHHHHHHHHHHhccChHHHHHH
Q 037477 177 AKKASDLAALNQFHDGMVKEIAMDN--VAKTLVDVVLGSDWDDKIGKKLEDMK--IELSDNFVLTVLKELRIYPVKALGF 252 (639)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~A~~~ 252 (639)
.|+.+. +.+++..+.+.+..++ +++.++.+|+++|..+++.+.+++|. ...+|+.++..+.. .+++++|+++
T Consensus 301 ~g~~~~---a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~-~g~~~~A~~l 376 (857)
T PLN03077 301 LGDERL---GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK-NGLPDKALET 376 (857)
T ss_pred cCChHH---HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-CCCHHHHHHH
Confidence 986655 4678889998886666 78999999999999999999999996 45799999999988 4789999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 037477 253 FRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPY 332 (639)
Q Consensus 253 f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (639)
|++|. ..|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+
T Consensus 377 f~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 377 YALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHH-HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 99995 68999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHH
Q 037477 333 KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYS 412 (639)
Q Consensus 333 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 412 (639)
+|..+|+.++.+|++.+ ...++..++.+|.. +..||..+|+.++.+|++.|+++.+.+++..|.+.|+.+|..++|
T Consensus 453 -~d~vs~~~mi~~~~~~g--~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNN--RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred -CCeeeHHHHHHHHHHCC--CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 68899999999999877 46789999999976 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
+||++|+++|++++|.++|++| .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 9999999999999999999998 48999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh---hcCCHHHHHHHH
Q 037477 493 RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS---KFGTVEDASEFL 569 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~---~~g~~~~a~~~~ 569 (639)
++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|. +.||..+|..++. ..|+.+.|+...
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999999777999999999999999999999999999999984 8899999988874 568999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CccccCChhHHHhh
Q 037477 570 KALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC-PHHIRQDSKISLLF 620 (639)
Q Consensus 570 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~l~ 620 (639)
+++.+..|.+...|..|.+.|++.|+|++|.++.+.| ..+..+.|..+++-
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 9999999999999999999999999999999999999 44566677766653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=533.14 Aligned_cols=475 Identities=16% Similarity=0.174 Sum_probs=428.6
Q ss_pred CHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037477 94 THESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGV 173 (639)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~ 173 (639)
+...++..+.. .|++++|+++|++|....++.||..+|+.+|.+|++.++++.+.+++..|.+.|+.||..+|+.++.+
T Consensus 89 ~~~~~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 44555555555 68899999999999875567889999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHH
Q 037477 174 LKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFF 253 (639)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f 253 (639)
|++.|+++++. ++|+.|.+ +...+|+.++..+... +++++|+++|
T Consensus 168 y~k~g~~~~A~---~lf~~m~~-------------------------------~~~~t~n~li~~~~~~-g~~~~A~~lf 212 (697)
T PLN03081 168 HVKCGMLIDAR---RLFDEMPE-------------------------------RNLASWGTIIGGLVDA-GNYREAFALF 212 (697)
T ss_pred HhcCCCHHHHH---HHHhcCCC-------------------------------CCeeeHHHHHHHHHHC-cCHHHHHHHH
Confidence 99888776653 33444432 1345677777777664 7889999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037477 254 RWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK 333 (639)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (639)
++|. +.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|. .
T Consensus 213 ~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 287 (697)
T PLN03081 213 REMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----E 287 (697)
T ss_pred HHHH-HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 9996 6799999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 037477 334 PSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQ 413 (639)
Q Consensus 334 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 413 (639)
+|..+||.++.+|++.+ +.+++..++.+|...|..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|++
T Consensus 288 ~~~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 288 KTTVAWNSMLAGYALHG--YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CChhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 69999999999999987 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
||++|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999975 79999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH---hhcCCHHHHHHHHH
Q 037477 494 VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI---SKFGTVEDASEFLK 570 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~g~~~~a~~~~~ 570 (639)
+++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++| ++.|+..+|..++ +..|+++.|..+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999987899999999999999999999999999998876 5889999998887 47799999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc-ccCChhHHH
Q 037477 571 ALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH-IRQDSKISL 618 (639)
Q Consensus 571 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ 618 (639)
++.+..|.+..+|..|+++|++.|+|++|.+++++|... ..+.|..++
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 998888888999999999999999999999999999655 344555443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=517.95 Aligned_cols=486 Identities=14% Similarity=0.126 Sum_probs=444.2
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 037477 112 ASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC-YIEEETYLSILGVLKKAKKASDLAALNQFH 190 (639)
Q Consensus 112 A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 190 (639)
++...++... ..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..+++. .++
T Consensus 356 ~~~~~~~~~~---~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl---~lf 429 (1060)
T PLN03218 356 SLAAYNGGVS---GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAF---RFA 429 (1060)
T ss_pred hHHHhccccC---CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHH---HHH
Confidence 4444444433 447888999999999999999999999999999995 578888999999999999877764 456
Q ss_pred HHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhcc------CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC
Q 037477 191 DGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMK------IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH 264 (639)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p 264 (639)
..|.. .....++.++..|++.++.+.+.+.++.|. ...+++.++..+.. .++.++|.++|+.|. +.|+.|
T Consensus 430 ~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k-~G~vd~A~~vf~eM~-~~Gv~P 505 (1060)
T PLN03218 430 KLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK-SGKVDAMFEVFHEMV-NAGVEA 505 (1060)
T ss_pred HHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CcCHHHHHHHHHHHH-HcCCCC
Confidence 66655 445589999999999999999998888873 23577888888887 488999999999996 689999
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCCCCHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD--GPYKPSVQDCSLL 342 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~~~~~l 342 (639)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976 6899999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG 422 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 422 (639)
|.+|++.+ +.+.+.++++.|.+.+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 586 I~ay~k~G--~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 586 MKACANAG--QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHCC--CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999988 5778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhh-------c----------------
Q 037477 503 EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISK-------F---------------- 559 (639)
Q Consensus 503 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-------~---------------- 559 (639)
+|.+. |+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|..++.. +
T Consensus 744 eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 744 EMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 99987 99999999999999999999999999999999999999999998877631 1
Q ss_pred ---CCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccc
Q 037477 560 ---GTVEDASEFLKALSVK-EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHI 610 (639)
Q Consensus 560 ---g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 610 (639)
+..++|..+|++|.+. ..|+..+|+.++.++++.+..+.+..+++.|...+
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 1236799999999987 89999999999999999999999999999885443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=494.83 Aligned_cols=430 Identities=14% Similarity=0.134 Sum_probs=372.9
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchh--H
Q 037477 126 RPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH-CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDN--V 202 (639)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 202 (639)
.++..+|+.+|.+|++.|++++|+.+|+.|...+ +.||..||+.++.+|++.++.+. +.+++..+.+.+..++ +
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~---a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRC---VKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHhCCCcchHH
Confidence 3677899999999999999999999999999865 78999999999999999986654 4667788887765554 6
Q ss_pred HHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh
Q 037477 203 AKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV 282 (639)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 282 (639)
++.++.+|.+ .++.++|.++|+.|. .||.++||++|.+|++.|++
T Consensus 161 ~n~Li~~y~k------------------------------~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 161 MNRVLLMHVK------------------------------CGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHHHHHhc------------------------------CCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCH
Confidence 6777777776 356778999998885 47889999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 037477 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVAN 362 (639)
Q Consensus 283 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 362 (639)
++|.++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.+ +.+.+.++++
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--~~~~A~~vf~ 283 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG--DIEDARCVFD 283 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC--CHHHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999887 4667888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037477 363 KYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD 442 (639)
Q Consensus 363 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 442 (639)
.|.. +|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||
T Consensus 284 ~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 284 GMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred hCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 7753 578889999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
..+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+. |+.||..||+.++.
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLS 434 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHH
Confidence 9999999999999999999999998885 468888999999999999999999999999886 89999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-CCCCCChHhHHHHH---hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 523 KLLGARRLEEAMNLLRLMKK-QNYPPFPEPFVQYI---SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (639)
+|++.|.+++|.++|+.|.+ .|+.|+..+|..++ ++.|++++|.+++++|. ..|+..+|+.|+.+|...|+++.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999975 68889887776554 78899999998888764 56788889999999999999999
Q ss_pred HHHHHhhC
Q 037477 599 AKDLLYKC 606 (639)
Q Consensus 599 A~~~~~~m 606 (639)
|..+++++
T Consensus 513 a~~~~~~l 520 (697)
T PLN03081 513 GRLAAEKL 520 (697)
T ss_pred HHHHHHHH
Confidence 88888876
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-24 Score=241.14 Aligned_cols=480 Identities=13% Similarity=0.046 Sum_probs=226.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|.++|+.+.+.. +.+...|..+...+...|++++|...|+++.+... .+......++..+.+.|+++++..
T Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHH
Confidence 577777777777766521 12455566666666667777777777766665431 122334444555555555554432
Q ss_pred HHHHHHHHhhhc-cchhHHHHHHHHHhcCCchHHHHHHHhhcc-C-cCCH--HHHHHHHHHhccChHHHHHHHHHHhccC
Q 037477 186 LNQFHDGMVKEI-AMDNVAKTLVDVVLGSDWDDKIGKKLEDMK-I-ELSD--NFVLTVLKELRIYPVKALGFFRWVGEHS 260 (639)
Q Consensus 186 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~l~~~~~~~~~A~~~f~~~~~~~ 260 (639)
++..+.... ..+.++..+..++...|..+.+...+.+.- . +... ......+....+++++|.+.|+.+.+..
T Consensus 453 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 453 ---AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred ---HHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333321 122344555555555555555555554431 1 1111 1111111122355555555555553211
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
+.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|...|++++|..+++.+.+.. +.+...|.
T Consensus 530 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 530 --PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 2344555555555555555555555555554443 2344445555555555555555555555554321 23344444
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 420 (639)
.+..++...+ +.+.+...+..+.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+..
T Consensus 606 ~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 606 MLGRAQLAAG--DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444444433 2334444444443322 1223344445555555555555555555554432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 037477 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (639)
.|++++|..+++.+.+.+. .+...+..+...+...|++++|.+.++.+.+.+ |+..++..+..++.+.|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555555555544432 234444445555555555555555555554432 2223444444455555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCHHHHHHHHHHhhcCCC
Q 037477 501 LVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 501 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~ 577 (639)
++.+.+. ...+...+..+...|...|++++|.+.|+++.+.. +++...+ ..++...|+ ++|..+++++....|
T Consensus 759 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 5554443 12234444444455555555555555555554422 1111111 111233344 444444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 578 PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 578 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.++..+..+..+|...|++++|.++++++
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-23 Score=237.03 Aligned_cols=485 Identities=11% Similarity=0.005 Sum_probs=329.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|...|+.+.+.. +.+...+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+.+.|+++++.
T Consensus 308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~- 383 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA- 383 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH-
Confidence 577777777777776532 2345666777777888888888888888877654 345667777777888887776654
Q ss_pred HHHHHHHHhhhcc-chhHHHHHHHHHhcCCchHHHHHHHhhccC-cC----CHHHHHHHHHHhccChHHHHHHHHHHhcc
Q 037477 186 LNQFHDGMVKEIA-MDNVAKTLVDVVLGSDWDDKIGKKLEDMKI-EL----SDNFVLTVLKELRIYPVKALGFFRWVGEH 259 (639)
Q Consensus 186 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~~~A~~~f~~~~~~ 259 (639)
..+..+.+... ...+...+..++...|..+.+...+..... .+ ....+...+ ...++.++|+++++.+..
T Consensus 384 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~- 459 (899)
T TIGR02917 384 --EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY-LRSGQFDKALAAAKKLEK- 459 (899)
T ss_pred --HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHHH-
Confidence 34555544332 223555666667777777766666655421 11 111111222 224777888888887753
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHH
Q 037477 260 SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDC 339 (639)
Q Consensus 260 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (639)
..+++..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++
T Consensus 460 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 460 -KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred -hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 334567788888888888888888888888887653 4456667777888888888888888888887643 2345666
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 037477 340 SLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLC 419 (639)
Q Consensus 340 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 419 (639)
..+...+...+ +...+...+..+.... +.+...+..++..|...|++++|.++++.+.+.. +.+...|..+..+|.
T Consensus 537 ~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 537 LALAGLYLRTG--NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 66666666644 4556666666655443 2344566677778888888888888888877654 456677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
..|++++|...|+++.+... .+...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888776542 256677777788888888888888888877654 3456777777777888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHhhcCCHHHHHHHHHHhhcCCCC
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EPFVQYISKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
+++.+.+.. ..+...+..+...+.+.|++++|.+.++.+...+..+.. ..+..++...|+.++|.+.++++.+..|.
T Consensus 691 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 691 IAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888777652 334556677777777788888888888877764322211 12233345667777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 579 SSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
+...+..+...|...|++++|.++|+++...
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777776433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-16 Score=177.01 Aligned_cols=486 Identities=11% Similarity=0.024 Sum_probs=265.3
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCh-HHH----------------HHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHH
Q 037477 105 LDNDPEKASAFFNWVCDKKQFRPSS-TVY----------------SLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETY 167 (639)
Q Consensus 105 ~~~~~~~A~~~f~~~~~~~~~~~~~-~~~----------------~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~ 167 (639)
..|+.++|.+.++.+.+.. |+. ..+ -.+...+.+.|++++|+..|+...+.+ +|+...-
T Consensus 74 ~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la 149 (1157)
T PRK11447 74 RQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLA 149 (1157)
T ss_pred hCCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHH
Confidence 3799999999999998843 332 222 223346788999999999999988754 3333211
Q ss_pred HHHHHHH-HhcCchhhHHHHHHHHHHHhhhccc-hhHHHHHHHHHhcCCchHHHHHHHhhccCcCC--HHHHHHHH----
Q 037477 168 LSILGVL-KKAKKASDLAALNQFHDGMVKEIAM-DNVAKTLVDVVLGSDWDDKIGKKLEDMKIELS--DNFVLTVL---- 239 (639)
Q Consensus 168 ~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l---- 239 (639)
....... ...|+.+++ ...++.+.+..+. +.+...+-.++...+..+++...++++..... .......+
T Consensus 150 ~~y~~~~~~~~g~~~~A---~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 150 VEYWRLVAKLPAQRPEA---INQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHhhCCccHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 1112222 233555555 4556666665433 34667788888888888888888777632111 00010011
Q ss_pred ----------------HHhcc--ChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 037477 240 ----------------KELRI--YPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDI 301 (639)
Q Consensus 240 ----------------~~~~~--~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 301 (639)
..... ....|...+...... .-.|+... ......+...|++++|...|++..+.. +.+.
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~ 303 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDS 303 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 11111 112333333333211 11222211 223455667788888888888887763 3367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CHHHHHHHH----------HHHhhcCCCchhHHHHHHHHHHhcCCC
Q 037477 302 DTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKP-SVQDCSLLL----------RSISSINNPDLGLVFRVANKYESLGNS 370 (639)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (639)
..+..+...|.+.|++++|+..|++..+..-.. ....+..++ .+.......+.+.+...+++......
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P- 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN- 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 778888888888888888888888877643211 111121111 11122233456667777766666532
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHH------------------------------------
Q 037477 371 LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQV------------------------------------ 414 (639)
Q Consensus 371 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l------------------------------------ 414 (639)
.+...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 344556667778888888888888888877653 2223333222
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 415 ------IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 415 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
...+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l 539 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYL 539 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 23344567777777777777765432 45566667777777777777777777776643 22333333333334
Q ss_pred HcCCChhHHHHHHHHHHHhC--------------------------------------CCCCCHHHHHHHHHHHHhcCCH
Q 037477 489 LSQKRVNGAYKLLVEMIEKV--------------------------------------RLRPWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~--------------------------------------~~~p~~~~~~~li~~~~~~g~~ 530 (639)
...|+.++|...++.+.... ....+...+..+...+.+.|++
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 44455555555444332110 0011222334444455555555
Q ss_pred HHHHHHHHHHHhCCCCCCh-HhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 531 EEAMNLLRLMKKQNYPPFP-EPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~-~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
++|++.+++..+. .|+. ..+ ..++...|+.++|.+.++.+.+..|.+...+..+..++...|++++|.+++++.
T Consensus 620 ~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 620 AAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555555555542 2221 111 122234455555555555555544455555555555555555555555555554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-16 Score=176.08 Aligned_cols=489 Identities=10% Similarity=0.012 Sum_probs=305.0
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC--HHHHHHH------------
Q 037477 105 LDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIE--EETYLSI------------ 170 (639)
Q Consensus 105 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~t~~~l------------ 170 (639)
..++.++|++.++.+.+..+ -++..+..+...+...|+.++|+..++++.+..-... ...|...
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 35788889999998887432 3566777888888888999999999988865421000 0011000
Q ss_pred -HHH-HHhcCchhhHHHHHHHHHHHhhhccchhHH-HHHHHHHhcCCchHHHHHHHhhcc-CcCC-H--HHHHHHHHHhc
Q 037477 171 -LGV-LKKAKKASDLAALNQFHDGMVKEIAMDNVA-KTLVDVVLGSDWDDKIGKKLEDMK-IELS-D--NFVLTVLKELR 243 (639)
Q Consensus 171 -l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~~l~~~~ 243 (639)
+.. .........+......+.........+... ...-..+...|..+++...+++.- ..+. . ...+..+....
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 000 111111111111112222221111112211 122344556777777777776652 2221 1 22222223336
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHH------------HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYN------------GILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQF 311 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 311 (639)
++.++|+..|++..+...-.++...|. .....+.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA 395 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 889999999998864332222222222 22345678899999999999998874 44677788888999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC--------CCCChhhHHHHHHH
Q 037477 312 QKFRMMEDAVKLFEFMMDGPYKPS-VQDCSLLLRSISSINNPDLGLVFRVANKYESLG--------NSLSKSVYDGIHRA 382 (639)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~ 382 (639)
...|++++|++.|++..+. .|+ ...+..+...+.. . +.+.+...+..+.... .......+..+...
T Consensus 396 ~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~-~--~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQ-Q--SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh-c--CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999998865 333 3344444444432 2 2344444443322111 00112234556677
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+...+...|+.++|
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHH
Confidence 778888888888888887764 334566677788888888888888888887764322 333333333333444444444
Q ss_pred HHHHHHHHHc---------------------------------------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 463 LLCFAKMMEK---------------------------------------NYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 463 ~~~~~~m~~~---------------------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
...++.+... ..+.+...+..+...+.+.|++++|+..|+.
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444332110 1234556677788899999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh----HHHHHhhcCCHHHHHHHHHHhhcCCC--
Q 037477 504 MIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP----FVQYISKFGTVEDASEFLKALSVKEY-- 577 (639)
Q Consensus 504 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~~~~-- 577 (639)
..+.. ..+...+..+...|...|++++|++.++...+. .|+... +..++...|+.++|.++++++....+
T Consensus 629 al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 629 VLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 98752 224678899999999999999999999988763 344332 23344688999999999999987633
Q ss_pred -C---CHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 578 -P---SSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 578 -~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
+ +...+..+...+...|++++|++.+++..
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 33567778999999999999999999874
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-18 Score=174.44 Aligned_cols=309 Identities=18% Similarity=0.159 Sum_probs=169.3
Q ss_pred cCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHH
Q 037477 229 ELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD---IDTYI 305 (639)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~ 305 (639)
.........+.....+++++|+..|+.+.+.. +.+..++..+...+.+.|++++|..+++.+...+..++ ..++.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34444444444555688899999999996432 33567889999999999999999999999887642222 35678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCCh----hhHHHHHH
Q 037477 306 KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSK----SVYDGIHR 381 (639)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~ 381 (639)
.+...|.+.|++++|+.+|+++.+.. .++..++..+...+...+ +.+.+...+..+.+.+..+.. ..+..+..
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEK--DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 88999999999999999999987641 223444444444444433 233444444444433222111 12333444
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
.+.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.+......+++.++.+|...|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555555554432 222334444445555555555555555555443211112344445555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG---ARRLEEAMNLLR 538 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 538 (639)
|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 55555555443 233333444455555555555555555544432 3444445444444432 234455555555
Q ss_pred HHHhCCCCCC
Q 037477 539 LMKKQNYPPF 548 (639)
Q Consensus 539 ~m~~~~~~p~ 548 (639)
+|.+.++.|+
T Consensus 343 ~~~~~~~~~~ 352 (389)
T PRK11788 343 DLVGEQLKRK 352 (389)
T ss_pred HHHHHHHhCC
Confidence 5554444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-17 Score=169.64 Aligned_cols=320 Identities=12% Similarity=0.076 Sum_probs=243.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYI 162 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~ 162 (639)
+...++....+.......+.....|+++.|+..|..+.+.. +.+..+|..+...+...|++++|..+++.+...+..+
T Consensus 25 ~~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 102 (389)
T PRK11788 25 RQDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT 102 (389)
T ss_pred hhhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence 33455566667777666666556799999999999998732 2356688999999999999999999999998764222
Q ss_pred CH---HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHH
Q 037477 163 EE---ETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVL 239 (639)
Q Consensus 163 ~~---~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (639)
+. .++..+...|...
T Consensus 103 ~~~~~~~~~~La~~~~~~-------------------------------------------------------------- 120 (389)
T PRK11788 103 REQRLLALQELGQDYLKA-------------------------------------------------------------- 120 (389)
T ss_pred HHHHHHHHHHHHHHHHHC--------------------------------------------------------------
Confidence 21 2334444444443
Q ss_pred HHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcC
Q 037477 240 KELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD----IDTYIKISRQFQKFR 315 (639)
Q Consensus 240 ~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 315 (639)
++.++|+.+|+.+.+. -+++..+++.++..+.+.|++++|.+.++.+.+.+..+. ...|..+...+.+.|
T Consensus 121 ----g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 121 ----GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred ----CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 4455677777777532 245678899999999999999999999999988653332 224566777888999
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
++++|...|+++.+. .|+ +...+..+...|.+.|++++|.++
T Consensus 195 ~~~~A~~~~~~al~~--~p~------------------------------------~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 195 DLDAARALLKKALAA--DPQ------------------------------------CVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred CHHHHHHHHHHHHhH--CcC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998753 122 122355577889999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037477 396 MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYD 475 (639)
Q Consensus 396 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 475 (639)
|+++.+.+......+++.++.+|.+.|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~ 312 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--H 312 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence 9999876422224678889999999999999999999998864 66677788999999999999999999999876 6
Q ss_pred CCHHHHHHHHHHHHc---CCChhHHHHHHHHHHHhCCCCCCHH
Q 037477 476 ADADLLDVLINGFLS---QKRVNGAYKLLVEMIEKVRLRPWQA 515 (639)
Q Consensus 476 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~ 515 (639)
|+..+++.++..+.. .|+.+++..+|+.|.++ ++.|+..
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 888899988887764 56899999999999886 6666544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-15 Score=163.33 Aligned_cols=355 Identities=12% Similarity=0.001 Sum_probs=267.7
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+..|+...+ +.|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|++++|+.
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4888999999998753 46788889999999999999999999999988774 4467788889999999999999987
Q ss_pred HHHHhhcCC-CC---------------------------C----CHHHHHHHHHHHh---------h-------------
Q 037477 323 LFEFMMDGP-YK---------------------------P----SVQDCSLLLRSIS---------S------------- 348 (639)
Q Consensus 323 l~~~m~~~g-~~---------------------------p----~~~~~~~ll~~~~---------~------------- 348 (639)
-|......+ .. | ........+..+. .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 665443221 00 0 0000000000000 0
Q ss_pred ---------cCCCchhHHHHHHHHHHhcC-CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 037477 349 ---------INNPDLGLVFRVANKYESLG-NSL-SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFG 417 (639)
Q Consensus 349 ---------~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 417 (639)
......+.+...++.....+ ..| ....+..+...+...|++++|...|++..+.. +.+...|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 00012233444455444443 222 34567888888899999999999999998763 2346688888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
+...|++++|...|++..+.... +...|..+...+...|++++|...|++.++.. +.+...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999876532 57889999999999999999999999999875 34577788888899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--Hh----HH---HHHhhcCCHHHHHHH
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP--EP----FV---QYISKFGTVEDASEF 568 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~----~~---~ll~~~g~~~~a~~~ 568 (639)
+..|++..+... -+...|+.+...+...|++++|++.|++..+.....+. .. +. .++...|++++|..+
T Consensus 453 ~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 453 MATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999887532 23568888899999999999999999998874321111 11 11 112346999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 569 LKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+++.....|.+...+..+..+|.+.|++++|++.|++.
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99998888888889999999999999999999999885
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-13 Score=149.96 Aligned_cols=471 Identities=10% Similarity=-0.016 Sum_probs=312.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHH--------HHh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIE-EETYLSILGV--------LKK 176 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~ll~~--------~~~ 176 (639)
.|++++|+..++...+. .|+-..|..++..+ ++.++|..+++++.+.. |+ ..++..+... |.+
T Consensus 91 ~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q 162 (987)
T PRK09782 91 FGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQ 162 (987)
T ss_pred CCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhh
Confidence 68889999998888872 24444444434333 78888889999988764 33 3444333333 444
Q ss_pred cCchhhHHHHHHHHHHHhhhccchhHHHHH-HHHHhcCCchHHHHHHHhhcc--CcCCHHHH---HHHHHHhccChHHHH
Q 037477 177 AKKASDLAALNQFHDGMVKEIAMDNVAKTL-VDVVLGSDWDDKIGKKLEDMK--IELSDNFV---LTVLKELRIYPVKAL 250 (639)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~l~~~~~~~~~A~ 250 (639)
. +++..... .........+.+.... ..+|.+.++...+...+.++. .+.+.... -.++....+. +.+.
T Consensus 163 ~---eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 163 L---PVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred H---HHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHH
Confidence 4 45544444 3333322233444444 888888888887777777764 22333222 2233331122 6677
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-CCHHHHHHH----------------------
Q 037477 251 GFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYE-MDIDTYIKI---------------------- 307 (639)
Q Consensus 251 ~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l---------------------- 307 (639)
.+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |...+|--+
T Consensus 237 al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 237 ALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 77543 23468888999999999999999999998887654211 222222110
Q ss_pred --------HHH---------------------------------------------------------------HHhcCC
Q 037477 308 --------SRQ---------------------------------------------------------------FQKFRM 316 (639)
Q Consensus 308 --------i~~---------------------------------------------------------------~~~~g~ 316 (639)
+.- ..+.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 111 233455
Q ss_pred HHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcCCCch-hHHHHH----------------------HHHHHh-cCC-
Q 037477 317 MEDAVKLFEFMMDG--PYKPSVQDCSLLLRSISSINNPDL-GLVFRV----------------------ANKYES-LGN- 369 (639)
Q Consensus 317 ~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~-~~~~~~----------------------~~~~~~-~~~- 369 (639)
.++|.++|+..... +-.++.....-++..+.+.+..+. ..+..+ ...... .+.
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 66666666665541 122233344455566655443111 111111 111111 122
Q ss_pred CC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 370 SL--SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 370 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+. +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 22 45667777777776 8898999988887766 466554444455556899999999999998654 34555677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
.+...+.+.|+.++|...+++.++.+ +.+...+..+.......|++++|...+++..+. .|+...|..+...+.+.
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHC
Confidence 77888899999999999999999875 333344444444555679999999999999865 56788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhH----HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 528 RRLEEAMNLLRLMKKQNYPPFPEPF----VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
|+.++|+..+++..+ ..|+.... ...+...|+.++|+..+++..+..|.++..+..+..+|...|++++|...+
T Consensus 623 G~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999988 44665433 334568899999999999999999999999999999999999999999999
Q ss_pred hhC
Q 037477 604 YKC 606 (639)
Q Consensus 604 ~~m 606 (639)
++.
T Consensus 701 ~~A 703 (987)
T PRK09782 701 RLV 703 (987)
T ss_pred HHH
Confidence 985
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-14 Score=135.22 Aligned_cols=251 Identities=18% Similarity=0.234 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 037477 110 EKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQF 189 (639)
Q Consensus 110 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~ 189 (639)
+.|.-+|+..++ +..+|..||.++++.-..+.|.++|++-.+...+.+..+||.+|.+-.-..
T Consensus 194 ~vAdL~~E~~PK------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----------- 256 (625)
T KOG4422|consen 194 AVADLLFETLPK------TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----------- 256 (625)
T ss_pred cHHHHHHhhcCC------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-----------
Confidence 334555555543 677888888888888888888888888887777788888888876644331
Q ss_pred HHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHH
Q 037477 190 HDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITY 269 (639)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~ 269 (639)
..++..+|. ...+.||..|+
T Consensus 257 -----------------------------------------------------------~K~Lv~EMi-sqkm~Pnl~Tf 276 (625)
T KOG4422|consen 257 -----------------------------------------------------------GKKLVAEMI-SQKMTPNLFTF 276 (625)
T ss_pred -----------------------------------------------------------cHHHHHHHH-HhhcCCchHhH
Confidence 012222232 23458999999
Q ss_pred HHHHHHHHcCCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhc----CCCCC----CH
Q 037477 270 NGILRVLARHESVRD----FWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMED-AVKLFEFMMD----GPYKP----SV 336 (639)
Q Consensus 270 ~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~----~g~~p----~~ 336 (639)
|+++.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ +..++.+++. ..++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56788889999999999999999998888887644 4444444432 23333 23
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC----CCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 037477 337 QDCSLLLRSISSINNPDLGLVFRVANKYESLGN----SLS---KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNI 409 (639)
Q Consensus 337 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 409 (639)
..+...|+.|.... |...+.++...+..... .++ ..-|..+....|.....+.-...|+.|.-.-+-|+..
T Consensus 357 ~FF~~AM~Ic~~l~--d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 357 KFFQSAMSICSSLR--DLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 34445555555433 44445454444433211 111 1234445555566666666666666666555555666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGC 439 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 439 (639)
+...++++.--.|+++-..+++..+...|.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 666666666666666666666666665543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-14 Score=131.06 Aligned_cols=431 Identities=14% Similarity=0.155 Sum_probs=289.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHH
Q 037477 130 TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDV 209 (639)
Q Consensus 130 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (639)
.+=|.|+. +...|.++.+.-+|+.|...|+..++..-..|++.-+-.+.-+-.-.-.+.|-.+.+.+.... -
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~-------~ 188 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST-------S 188 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc-------c
Confidence 34455554 445688899999999999999998888877777764443321111111122333332221100 0
Q ss_pred HhcCCchHHHHHHHhhcc-CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 037477 210 VLGSDWDDKIGKKLEDMK-IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNV 288 (639)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 288 (639)
-.+.|.. +.-.++..+ .+-++..++..+++. ...+.|.+++++-.. ...+.+..+||.+|.+-.-..+ .++
T Consensus 189 sWK~G~v--AdL~~E~~PKT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~----K~L 260 (625)
T KOG4422|consen 189 SWKSGAV--ADLLFETLPKTDETVSIMIAGLCKF-SSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVG----KKL 260 (625)
T ss_pred ccccccH--HHHHHhhcCCCchhHHHHHHHHHHH-HhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhcc----HHH
Confidence 0111222 223334443 345778888888876 567789999998854 4447899999999976543322 889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCch---hHHHHHH
Q 037477 289 VEEMKKEGYEMDIDTYIKISRQFQKFRMMED----AVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDL---GLVFRVA 361 (639)
Q Consensus 289 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---~~~~~~~ 361 (639)
+.+|....+.||..|+|+++.+.++.|+++. |++++.+|++.|+.|...+|..+|...++-+.+.. ....++.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999999999999999999999998765 56788999999999999999999998888776532 2233344
Q ss_pred HHHHhcCCCC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHCC----CCCC---HHhHHHHHHHHHhcCCHHHHHHH
Q 037477 362 NKYESLGNSL----SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG----FEPD---NITYSQVIFGLCKAGRFEDACNV 430 (639)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~ 430 (639)
..+......| |...|...++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333332 44567788888999999999999877665321 2233 23466788888999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-Ch--h-----------H
Q 037477 431 LDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK-RV--N-----------G 496 (639)
Q Consensus 431 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~--~-----------~ 496 (639)
|+.|.-+-.-|+..+...++++..-.|.++-.-++|..++..|...+...-.-++..+++.. +. . -
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 99999887789999999999999999999999999999999886666665555555555544 11 0 0
Q ss_pred HHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHhHH---HHH---hhcCCH
Q 037477 497 AYKLLV-------EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFPEPFV---QYI---SKFGTV 562 (639)
Q Consensus 497 A~~~~~-------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~---~ll---~~~g~~ 562 (639)
|..+++ +|.+ ..-.....+++.-.+.+.|..++|.+++..+.+.+.+ |.....+ .++ ....+.
T Consensus 501 aad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 111111 1221 2223346677777788888888888888888654433 3222333 333 244566
Q ss_pred HHHHHHHHHhhcCCCCC
Q 037477 563 EDASEFLKALSVKEYPS 579 (639)
Q Consensus 563 ~~a~~~~~~~~~~~~~~ 579 (639)
..|...++-+.....+.
T Consensus 578 sqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHHHHHcCchh
Confidence 66777777665543333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-14 Score=149.91 Aligned_cols=415 Identities=14% Similarity=0.009 Sum_probs=220.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+..|+.+.+ ..|+...|..+..+|.+.|++++|+..++...+.. +-+...|..+-.++...|+++++..
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5899999999999887 44788899999999999999999999999988764 2355678888889999999888754
Q ss_pred HHHHHHHHhhh-ccchhHHHHHHHHHhcCCchHHHHHHHhhccC-cCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCC
Q 037477 186 LNQFHDGMVKE-IAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKI-ELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYK 263 (639)
Q Consensus 186 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~ 263 (639)
-. ...... +..+.....++.-+........+...+...+. ...+..+...+...+.. .+..-+... ....
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~ 287 (615)
T TIGR00990 216 DL---TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPK--PRPAGLEDS---NELD 287 (615)
T ss_pred HH---HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC--cchhhhhcc---cccc
Confidence 32 222211 11111111111111000011122222222221 12222222222211100 011111100 0011
Q ss_pred CCH-HHHHHHHHH---HHcCCChhHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 264 HNT-ITYNGILRV---LARHESVRDFWNVVEEMKKEG-Y-EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 264 p~~-~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
++. ..+..+... ....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|+...+. .|+.
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~- 364 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV- 364 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc-
Confidence 110 001111100 122356777777777777654 2 223456677777777777788887777776543 2221
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFG 417 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 417 (639)
...|..+...+...|++++|...|+...+.. +.+...|..+...
T Consensus 365 -----------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 365 -----------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred -----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1123334455556666666666666665543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
+...|++++|...|++..+.... +...+..+...+.+.|++++|...+++.++.. +-+...++.+...+...|++++|
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHH
Confidence 66666666666666666654321 34455556666666666666666666665542 23455566666666666666666
Q ss_pred HHHHHHHHHhCCC-C---CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHH
Q 037477 498 YKLLVEMIEKVRL-R---PWQ-ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEF 568 (639)
Q Consensus 498 ~~~~~~m~~~~~~-~---p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~ 568 (639)
...|+...+...- . .+. ..++.....+...|++++|.+++++..+.. |+.. .+..++...|++++|..+
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 6666665543110 0 010 111222222333466666666666655432 3322 223333456666666666
Q ss_pred HHHhhcC
Q 037477 569 LKALSVK 575 (639)
Q Consensus 569 ~~~~~~~ 575 (639)
|++..+.
T Consensus 565 ~e~A~~l 571 (615)
T TIGR00990 565 FERAAEL 571 (615)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-14 Score=153.03 Aligned_cols=418 Identities=13% Similarity=0.072 Sum_probs=251.9
Q ss_pred CCCCHHHHHHHHHh--cCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHH
Q 037477 91 PKLTHESVVYVLRK--LDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYL 168 (639)
Q Consensus 91 ~~~~~~~~~~~l~~--~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~ 168 (639)
..+++..|..-+.- ..|+.++|++++....... ..+...+..+...+.+.|++++|..+|++..+.. +.+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45556655554332 3789999999999887511 2455568889999999999999999999977653 23344555
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHH
Q 037477 169 SILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVK 248 (639)
Q Consensus 169 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (639)
.+...+...|+. ++
T Consensus 88 ~la~~l~~~g~~------------------------------------------------------------------~e 101 (765)
T PRK10049 88 GLILTLADAGQY------------------------------------------------------------------DE 101 (765)
T ss_pred HHHHHHHHCCCH------------------------------------------------------------------HH
Confidence 555555555444 44
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 037477 249 ALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM 328 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (639)
|+..++...+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++...
T Consensus 102 A~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 102 ALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 555555553321 33555 8888889999999999999999999874 3466667778888889999999999998776
Q ss_pred cCCCCCCHHH------HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh---hHHHHHHHHH
Q 037477 329 DGPYKPSVQD------CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRF---DEAEKMMKAM 399 (639)
Q Consensus 329 ~~g~~p~~~~------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m 399 (639)
. .|+... ...+++.. +.......+++ ++|++.++.+
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~--------------------------------~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLS--------------------------------FMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhh--------------------------------cccccChhHHHHHHHHHHHHHHHH
Confidence 4 333100 00000000 00011111223 5566666666
Q ss_pred HHC-CCCCCHH-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 400 KNA-GFEPDNI-TYS----QVIFGLCKAGRFEDACNVLDEMEENGCI-PDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 400 ~~~-g~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.+. ...|+.. .+. ..+..+...|++++|+..|+++.+.+.. |+. .-..+...|...|++++|...|+++.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 543 1122221 111 1123344567777777777777665422 221 1122455677777777777777776654
Q ss_pred CCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 037477 473 NYDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR----------LRPW---QATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 473 g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
.... .......+..++...|++++|..+++.+.+... -.|+ ...+..+...+...|++++|+++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2111 123444555566777777777777777765411 1122 12344555666677777777777
Q ss_pred HHHHHhCCCCCChHhH----HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccC
Q 037477 537 LRLMKKQNYPPFPEPF----VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQ 612 (639)
Q Consensus 537 ~~~m~~~~~~p~~~~~----~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 612 (639)
++++... .|+...+ ..++...|+.++|++.+++.....|.+...+...+..+.+.|++++|..+++++....+.
T Consensus 382 l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 382 ARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 7777653 3443222 223346677777777777777777777777777777777777777777777776444444
Q ss_pred ChhHHHh
Q 037477 613 DSKISLL 619 (639)
Q Consensus 613 ~~~~~~l 619 (639)
++.+..+
T Consensus 460 ~~~~~~~ 466 (765)
T PRK10049 460 DPGVQRL 466 (765)
T ss_pred CHHHHHH
Confidence 4443333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-14 Score=155.41 Aligned_cols=319 Identities=10% Similarity=0.047 Sum_probs=216.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.++.++|+.+++.+.... +-+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|+.
T Consensus 55 ~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred cCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 477778888887775332 2244455556666777888888888888888764 4456677888888888888888888
Q ss_pred HHHHhhcCCCCCC-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 323 LFEFMMDGPYKPS-VQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 323 l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
.+++..+. .|+ ...+..+...+...+ +.+.+...+..+......+. ..+..+ ..+...|++++|...++.+.+
T Consensus 132 ~l~~Al~l--~P~~~~a~~~la~~l~~~g--~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 132 LAEQAWLA--FSGNSQIFALHLRTLVLMD--KELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 88888764 343 344455555555544 34455555554443332222 223223 346777888888888888766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCC
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR----ALLCFAKMMEKNYDAD 477 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~ 477 (639)
....++...+..+...+...|++++|...+++..+.... +...+..+...+...|++++ |...+++..+.. +.+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 543334444555567778888888888888888776533 56677778888888888875 788888887764 335
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH----
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---- 552 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---- 552 (639)
...+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|++.++.+.+.. |+...+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~ 358 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYA 358 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHH
Confidence 667778888888888888888888887765 333 4456667777888888888888888877642 433221
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcCCC
Q 037477 553 VQYISKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 553 ~~ll~~~g~~~~a~~~~~~~~~~~~ 577 (639)
..++...|+.++|...|++..+..|
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 2335677888888888888777643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-13 Score=148.35 Aligned_cols=253 Identities=10% Similarity=0.026 Sum_probs=180.0
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++.++|+..|+...+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 55667777777775321 2345667777777777788888877777766553 2233333333 336677777777777
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG 403 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (639)
++.+.+..-. .+...+..+..++...|++++|...++...+..
T Consensus 200 ~~~~l~~~~~-------------------------------------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 200 ARALLPFFAL-------------------------------------ERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHhcCCC-------------------------------------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7776543111 111223334567778899999999999988765
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 404 FEPDNITYSQVIFGLCKAGRFED----ACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
+.+...+..+...|...|++++ |...|++..+.... +...+..+...+...|++++|...+++..+.. +.+..
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~ 319 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPY 319 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 4456777888888999999885 78889888876432 56788888899999999999999999988864 33556
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQA-TFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.+..+..+|.+.|++++|...|+.+.+. .|+.. .+..+..++...|+.++|.+.|+...+.
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6777888899999999999999988765 34432 3334456788899999999999988764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-12 Score=139.17 Aligned_cols=493 Identities=11% Similarity=0.008 Sum_probs=310.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037477 95 HESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVL 174 (639)
Q Consensus 95 ~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~ 174 (639)
+......+....|++++|+..|+.+.+..+ -+..++..|...|...|+.++|+..+++..+.. |+...|..++..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence 334444444446999999999999988432 346788999999999999999999999998874 6656665555444
Q ss_pred HhcCchhhHHHHHHHHHHHhhhccchh-HHHHHHHH--------HhcCCchHHHHHHHhhccCcCCH---HHHHHHHHHh
Q 037477 175 KKAKKASDLAALNQFHDGMVKEIAMDN-VAKTLVDV--------VLGSDWDDKIGKKLEDMKIELSD---NFVLTVLKEL 242 (639)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~ 242 (639)
++.+.+ ..+++.+....+... +...+... |.+.+....+.. .......... .....-+...
T Consensus 122 ---~~~~kA---~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 ---PVEVKS---VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ---ccChhH---HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 544544 366778877755533 55555554 665544444444 2222222121 2221122233
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc-CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLAR-HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 321 (639)
.+++++|++.+..+.+.. +.+..-...|-..|.. .++ +++..+++. .++-+...+..+...|.+.|+.++|.
T Consensus 195 l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 588899999999997543 3345556667777877 466 888888553 33358999999999999999999999
Q ss_pred HHHHHhhcCCCC-CCHHHHHHHHHHHhhc------------------------------CC-------------------
Q 037477 322 KLFEFMMDGPYK-PSVQDCSLLLRSISSI------------------------------NN------------------- 351 (639)
Q Consensus 322 ~l~~~m~~~g~~-p~~~~~~~ll~~~~~~------------------------------~~------------------- 351 (639)
++++++...-.. |+..++--++.-+... +.
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 999998654222 4433333332221111 00
Q ss_pred --------CchhHHHHHHHHHHhc-C-----------------------------------CCCChhhHHHHHHHHHccC
Q 037477 352 --------PDLGLVFRVANKYESL-G-----------------------------------NSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 352 --------~~~~~~~~~~~~~~~~-~-----------------------------------~~~~~~~~~~li~~~~~~g 387 (639)
+...++...+..+-+. . ...+......++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 0000111111111111 0 0111222334445555444
Q ss_pred C---hhHHHHH----------------------HHHHHHC-CC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 388 R---FDEAEKM----------------------MKAMKNA-GF-EP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 388 ~---~~~A~~~----------------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
. ..++..+ .+..... +. ++ +...|..+..++.. ++.++|...+.+.....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 4 1122111 1111000 11 22 45556666666665 77888888777776543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHH
Q 037477 439 CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATF 517 (639)
Q Consensus 439 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~ 517 (639)
|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+. .|+ ...+
T Consensus 507 --Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~ 579 (987)
T PRK09782 507 --PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALY 579 (987)
T ss_pred --CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHH
Confidence 66544444455556899999999999987654 444455666677888899999999999988765 243 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH---HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 037477 518 KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFV---QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG 594 (639)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 594 (639)
..+...+.+.|++++|...+++..+. .|+...+. .++.+.|+.++|+..+++.....|.+...+..+..++...|
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34444455669999999999998873 45544433 33468899999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCccccCChh
Q 037477 595 RHYEAKDLLYKCPHHIRQDSK 615 (639)
Q Consensus 595 ~~~~A~~~~~~m~~~~~~~~~ 615 (639)
++++|++.+++.....+..+.
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 999999999885333333333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-14 Score=138.71 Aligned_cols=407 Identities=13% Similarity=0.066 Sum_probs=300.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
..+.+.....-....++ .+.-..+|..+...+-..|++++|+.+|+.|.+.. +-....|..+-.++...|+.+.+.
T Consensus 95 ~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~- 170 (966)
T KOG4626|consen 95 GSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAV- 170 (966)
T ss_pred ccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccH-
Confidence 44555544443333331 22346789999999999999999999999999874 124567888888888888766553
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC-
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH- 264 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p- 264 (639)
+.+...++.++... ....-...+.+..|+.++|...|.+..+. +|
T Consensus 171 --~~~~~alqlnP~l~-----------------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~~---qp~ 216 (966)
T KOG4626|consen 171 --QCFFEALQLNPDLY-----------------------------CARSDLGNLLKAEGRLEEAKACYLKAIET---QPC 216 (966)
T ss_pred --HHHHHHHhcCcchh-----------------------------hhhcchhHHHHhhcccchhHHHHHHHHhh---CCc
Confidence 33444444322111 00011112222346666777777665422 34
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
=.+.|+.|...+-..|+...|++-|++..+. .|+ ...|-.|...|...+.+++|+..|...... .|+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn-------- 284 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN-------- 284 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc--------
Confidence 3568888988999999999999999998876 344 567888888898899999998888776542 232
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
...++..+...|-..|+++.|...+++..+.. +.-...|+.|..++-..|+
T Consensus 285 ----------------------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 285 ----------------------------HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS 335 (966)
T ss_pred ----------------------------chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence 12345567777889999999999999998773 2236789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+.+|...|.+....... -....+.|...|...|.++.|..+|....+-. +--...++.|...|-++|++++|+..+++
T Consensus 336 V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 99999999998875432 45678889999999999999999999888753 22346688899999999999999999998
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCC
Q 037477 504 MIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 504 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
.. .+.|+ ...|+.|-..|-..|+.+.|++.+.+... +.|... .+..++...|++.+|+.-++...+..|.
T Consensus 414 al---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 414 AL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 86 46777 56788898999999999999999998886 556533 2344456789999999999999999888
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 037477 579 SSAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~ 598 (639)
.+..|-.++.++--..+|.+
T Consensus 489 fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred CchhhhHHHHHHHHHhcccc
Confidence 88888888777754444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-12 Score=136.59 Aligned_cols=440 Identities=12% Similarity=0.031 Sum_probs=248.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCh--HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037477 96 ESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSS--TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGV 173 (639)
Q Consensus 96 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~ 173 (639)
.....++....|+++.|+..|+.+.+.. |+. ..+ .++..+...|+.++|+..+++.... -.........+...
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 3334444444799999999999998732 443 234 8888888899999999999988721 11222222333445
Q ss_pred HHhcCchhhHHHHHHHHHHHhhhccch-hHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHH
Q 037477 174 LKKAKKASDLAALNQFHDGMVKEIAMD-NVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGF 252 (639)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 252 (639)
+...|+++.+ ..+++.+++..+.+ .+...+...+.. .+..++|++.
T Consensus 112 y~~~gdyd~A---iely~kaL~~dP~n~~~l~gLa~~y~~------------------------------~~q~~eAl~~ 158 (822)
T PRK14574 112 YRNEKRWDQA---LALWQSSLKKDPTNPDLISGMIMTQAD------------------------------AGRGGVVLKQ 158 (822)
T ss_pred HHHcCCHHHH---HHHHHHHHhhCCCCHHHHHHHHHHHhh------------------------------cCCHHHHHHH
Confidence 5666655544 33344444432221 122111111111 2445555555
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 037477 253 FRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPY 332 (639)
Q Consensus 253 f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (639)
++.+.+. .|+...+-.++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|+++..+-.+. +
T Consensus 159 l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f 233 (822)
T PRK14574 159 ATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V 233 (822)
T ss_pred HHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c
Confidence 5555322 3344444333333333444444666666665553 334455555555555666555555544432210 0
Q ss_pred CCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC---hhHHHHHHHHHHHC-CCCCCH
Q 037477 333 KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR---FDEAEKMMKAMKNA-GFEPDN 408 (639)
Q Consensus 333 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~~~~ 408 (639)
.+. .+.-|- ...+.+ ..+....++ -....+ .+.|+.-++.+... +-.|..
T Consensus 234 ~~~--~~~~l~----------~~~~a~----~vr~a~~~~----------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 234 SAE--HYRQLE----------RDAAAE----QVRMAVLPT----------RSETERFDIADKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred CHH--HHHHHH----------HHHHHH----HHhhccccc----------ccchhhHHHHHHHHHHHHHHHhhccCCCcc
Confidence 000 000000 000000 000000000 001112 23344444444431 112321
Q ss_pred -HhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCH
Q 037477 409 -ITY----SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN-----YDADA 478 (639)
Q Consensus 409 -~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~ 478 (639)
..| --.+-++...|++.++++.|+.|...|......+-..+.++|...+++++|..++..+.... ..++.
T Consensus 288 ~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 288 QADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 111 23455667788888888888888887765455677788888888888888888888886642 12334
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhCC------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVR------------LRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
.....|.-+|...+++++|..+++.+.+... ..|| ...+..++..+.-.|++.+|++.++++...
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-- 445 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-- 445 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4456778888888888888888888876311 1222 233444566677888888888888888763
Q ss_pred CCChHh----HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 546 PPFPEP----FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 546 ~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|...- ...+....|...+|++.++......|.+..+....+.++...|+|.+|..+.++.
T Consensus 446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 446 APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344332 2344467788888888887777777888888888888888888888887777553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-14 Score=137.29 Aligned_cols=356 Identities=14% Similarity=0.094 Sum_probs=250.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI-KISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~ 321 (639)
+++.++|+..|+.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+....-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 455556666666664321 224566777777777777777777777666654 34443332 2333334456667766
Q ss_pred HHHHHhhcCCCCCCH-HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSV-QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS-KSVYDGIHRALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (639)
.-|.+..+. +|.- ..|+.|=..+-.. ++...+.+-+++. ..+.|+ ...|-.+-..|...+.++.|...+.+.
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~--Gei~~aiq~y~eA--vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQ--GEIWLAIQHYEEA--VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhc--chHHHHHHHHHHh--hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 666665543 2211 1122111111111 1222222222222 233333 245777888889999999999998887
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 037477 400 KNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478 (639)
Q Consensus 400 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 478 (639)
.... +-..+.+..+...|-..|.++-|+..|++..+.. |+ ...|+.|..++-..|++.+|.+.+++.+... .-..
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 7653 2345667777777889999999999999998864 44 5789999999999999999999999999874 3356
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hH---H
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PF---V 553 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~---~ 553 (639)
...+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++..+ +.|+.. .+ .
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 7788999999999999999999998875 3555 45788899999999999999999999987 667643 22 2
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CccccCChhHH
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC-PHHIRQDSKIS 617 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~ 617 (639)
..+...|+++.|.+.+.+.....|.-.+.++.|...|-..|+..+|++-++.. +-+++.+.-..
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 33567899999999999999998889999999999999999999999999986 33344433333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-12 Score=131.19 Aligned_cols=528 Identities=11% Similarity=0.065 Sum_probs=327.9
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 037477 82 LENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDK-KQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC 160 (639)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~ 160 (639)
+..+++..+...-+-+--..+.--.+++..|+.+|..+... ....||+.. .+-..+.+.|+.+.|...|....+..
T Consensus 153 F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd- 229 (1018)
T KOG2002|consen 153 FHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD- 229 (1018)
T ss_pred HHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-
Confidence 44555555544444444444444468999999999986653 334455532 12245568899999999998888753
Q ss_pred CCCHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHH---
Q 037477 161 YIEEETYLSILGVL-KKAKKASDLAALNQFHDGMVKE-IAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFV--- 235 (639)
Q Consensus 161 ~~~~~t~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 235 (639)
|+.+.-...|..+ ....+.+....+.+.+...... +..|.+.+.|-+.|--.++...+......+-.......+
T Consensus 230 -p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ae 308 (1018)
T KOG2002|consen 230 -PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAE 308 (1018)
T ss_pred -hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3222221222222 1223334445556666665554 566778888888888888888877777665322111111
Q ss_pred ----HHHHHHhccChHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 236 ----LTVLKELRIYPVKALGFFRWVGEHSGYKHN--TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISR 309 (639)
Q Consensus 236 ----~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 309 (639)
+.--....|+.++|..+|....+ ..+| +..+--|...|.+.|+++.+...|+.+.+.. +-+..|...+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 11112336999999999988743 2343 4455667899999999999999999998873 446677777877
Q ss_pred HHHhcC----CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037477 310 QFQKFR----MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-PDLGLVFRVANKYESLGNSLSKSVYDGIHRALT 384 (639)
Q Consensus 310 ~~~~~g----~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 384 (639)
.|+..+ ..+.|..++....+.- .-|...|-.+-..+-.... ..++......+.+...+..+...+.|.+.....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 787775 4566666666655432 3344555555544443321 113334455556667777788899999999999
Q ss_pred ccCChhHHHHHHHHHHHC---CCCCCHH-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNA---GFEPDNI-------TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIK-TWTILIQGH 453 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~---g~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~ 453 (639)
..|++.+|...|+..... ...+|.. -|| +...+-..++.+.|.+.|..+.+.. |+-+ .|-.+...-
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMA 540 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHH
Confidence 999999999999988765 2233331 233 4455666778888888888888753 4433 333333222
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG------- 526 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~------- 526 (639)
...+...+|...++.....+ ..+...+..+-..+.+...+..|.+-|..+.++....+|..+.-+|-..|.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 33466777888887777643 3344455555556777777777777666666554444564444444443332
Q ss_pred -----cCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 527 -----ARRLEEAMNLLRLMKKQNYPPFP--EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEA 599 (639)
Q Consensus 527 -----~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 599 (639)
.+..++|+++|++..+.....-. .-...+++.+|++++|..+|.++.+.......+|..+.++|...|+|..|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 24566777777777663311111 12345567778888888888887776555667777788888888888888
Q ss_pred HHHHhhCCc--cccCChhHHHhhhc
Q 037477 600 KDLLYKCPH--HIRQDSKISLLFGS 622 (639)
Q Consensus 600 ~~~~~~m~~--~~~~~~~~~~l~~~ 622 (639)
+++|+.+.. .....+.+...++-
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHH
Confidence 888877622 23344444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-12 Score=140.61 Aligned_cols=369 Identities=11% Similarity=0.071 Sum_probs=256.0
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHH
Q 037477 128 SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLV 207 (639)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (639)
+..--.-.+.+....|+.++|+.+|.+..... +.+...+..+-..+...|+++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~-------------------------- 66 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQ-------------------------- 66 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH--------------------------
Confidence 44444556667778899999999998887622 344555666666666665444
Q ss_pred HHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 208 DVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWN 287 (639)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 287 (639)
+|..+|+...+.. +.+...+..+...+.+.|++++|..
T Consensus 67 ----------------------------------------~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 67 ----------------------------------------NSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred ----------------------------------------HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555543221 3356677788889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 037477 288 VVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESL 367 (639)
Q Consensus 288 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 367 (639)
.+++..+.. +.+.. +..+..++...|+.++|+..++++.+. .|+..
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~------------------------------ 150 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQ------------------------------ 150 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH------------------------------
Confidence 999998873 44566 888999999999999999999999764 33321
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHH-----hcCCH---HHHHHHHHH
Q 037477 368 GNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN------ITYSQVIFGLC-----KAGRF---EDACNVLDE 433 (639)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~ 433 (639)
..+..+..++...|..++|++.++.... .|+. .....++..+. ..+++ ++|++.++.
T Consensus 151 ------~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 151 ------QYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred ------HHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 2233345556667778888877765543 2221 01122222222 22334 778889998
Q ss_pred HHHC-CCCCCHH-HHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 434 MEEN-GCIPDIK-TWT----ILIQGHCAANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 434 m~~~-~~~p~~~-t~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+.+. ...|+.. .+. ..+..+...|+.++|...|+.+.+.+.. |+. .-..+...|...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 8854 2223321 111 1134456779999999999999987632 332 222256789999999999999999876
Q ss_pred hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCChH------hHHHHHhhcCCHHHHHH
Q 037477 507 KVRLRP--WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-----------PPFPE------PFVQYISKFGTVEDASE 567 (639)
Q Consensus 507 ~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~~------~~~~ll~~~g~~~~a~~ 567 (639)
.....+ ....+..+..++...|++++|.++++.+.+... .|+.. ....++...|+.++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 422221 134566777788999999999999999987421 12321 22344568899999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 568 FLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
.++++....|.+...+..+...+...|++++|++.+++....
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999996443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-11 Score=126.48 Aligned_cols=327 Identities=10% Similarity=0.018 Sum_probs=196.7
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCch
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDL 354 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 354 (639)
.|...|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+ +..++...+..+.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~--l~layL~~~~~~~ 185 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNY--MTLSYLNRATDRN 185 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHH--HHHHHHHHhcchH
Confidence 4444455555555555554442 222333444444444455555555555444433 3333333 1112222111122
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhH------HHHHHHH-----HhcCC
Q 037477 355 GLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITY------SQVIFGL-----CKAGR 423 (639)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~------~~li~~~-----~~~g~ 423 (639)
..+...++++.+.. +.+...+..++.++.+.|-...|.++..+-...- .+...-+ ..+++.- ....+
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 22333333333332 2233444555566666666666665554422110 0000000 0011000 01122
Q ss_pred ---HHHHHHHHHHHHHC-CCCCCHH-H----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 424 ---FEDACNVLDEMEEN-GCIPDIK-T----WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 424 ---~~~A~~~~~~m~~~-~~~p~~~-t----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
.+.|+.-++.+... +-.|... . .--.+-++...|+..++.+.++.+...|.+....+-.++.++|...+.+
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 34455555555542 2224321 1 2234557788999999999999999998776677888999999999999
Q ss_pred hHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCChHhHHHH--
Q 037477 495 NGAYKLLVEMIEKVR----LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN-------------YPPFPEPFVQY-- 555 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~l-- 555 (639)
++|..+|..+....+ ..++......|.-+|...+++++|..+++.+.+.. ..||......+
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 999999999876432 23344456789999999999999999999998731 12344444332
Q ss_pred --HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 556 --ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 556 --l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
+.-.|++.+|++.++++....|-|......+.+.+...|++.+|.+.++....
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 35679999999999999999999999999999999999999999999977543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-09 Score=111.89 Aligned_cols=426 Identities=11% Similarity=0.058 Sum_probs=268.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCchhh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRP-SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYL--SILGVLKKAKKASD 182 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~--~ll~~~~~~~~~~~ 182 (639)
.+++..++.+...+....-..+ -..+|=.+-++|-..|++++|...|.+-.+ ..+|.++++ -|-..+.+.|+.+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~ 360 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEE 360 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHH
Confidence 5777777777777766210000 123466677788888888888888855444 345554443 35566777775555
Q ss_pred HHHHHHHHHHHhhhccchh-HHHHHHHHHhcCC----chHHHHHHHhhcc--CcCCH-HHHHHHHHHhccChHHHHHHHH
Q 037477 183 LAALNQFHDGMVKEIAMDN-VAKTLVDVVLGSD----WDDKIGKKLEDMK--IELSD-NFVLTVLKELRIYPVKALGFFR 254 (639)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~----~~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~A~~~f~ 254 (639)
+ ...|+.+.+..+... ....+-.+|...+ ..+.+...+.+.- .+.+. .++.....-..+++..++.+|.
T Consensus 361 s---~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 361 S---KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred H---HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHH
Confidence 4 344556555543333 3333444444432 2233333333331 11111 1111111111345555566665
Q ss_pred HHh---ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 037477 255 WVG---EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKE---GYEMDI------DTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 255 ~~~---~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~a~~ 322 (639)
... ...+-++-....|.+.......|+++.|...|...... ...+|. .+--.+...+-..++.+.|.+
T Consensus 438 ~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 438 NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 442 22333467788888888888899999998888887655 122222 233345555666778888889
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHH-HHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANK-YESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
+|..+.+. -|+-.+...-+.+..+.... ...+...+.. +......|+ .+..+-..+.+...+..|.+-|....+
T Consensus 518 ~Yk~Ilke--hp~YId~ylRl~~ma~~k~~-~~ea~~~lk~~l~~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 518 MYKSILKE--HPGYIDAYLRLGCMARDKNN-LYEASLLLKDALNIDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHH--CchhHHHHHHhhHHHHhccC-cHHHHHHHHHHHhcccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 88888765 45544444433333333332 3333333333 333333344 444466678888888888887776654
Q ss_pred CC-CCCCHHhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 037477 402 AG-FEPDNITYSQVIFGLCK------------AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 402 ~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
.- ..+|+.+.-+|.+.|.. .+..++|+++|.+..+.... |.+.-|-+.-.++..|+++.|..+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHH
Confidence 32 23566666666665543 34577899999988887644 777888888889999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 469 MMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 469 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
..+... -+..+|..+.++|..+|++..|+++|+...+++.-.-+....+.|.+++.+.|.+.+|.+.+......
T Consensus 672 VrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 672 VREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 988753 24566888889999999999999999998888776667888899999999999999999988777663
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-11 Score=121.53 Aligned_cols=459 Identities=12% Similarity=0.071 Sum_probs=243.5
Q ss_pred CCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC------------------------CCCCHHHHHHHHHHHHhcC
Q 037477 123 KQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH------------------------CYIEEETYLSILGVLKKAK 178 (639)
Q Consensus 123 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g------------------------~~~~~~t~~~ll~~~~~~~ 178 (639)
.|+.||.++|..+|.-|+..|+.+.|- +|.-|.-.. -.|...||..|+.+|+..|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 455566666666666666655555554 444333211 1477889999999999999
Q ss_pred chhhHHHHHHHHHHHhhh----ccchhHHHHHHH----------------HHhcCCchHHHHHHHhhccCcCCHHHHHHH
Q 037477 179 KASDLAALNQFHDGMVKE----IAMDNVAKTLVD----------------VVLGSDWDDKIGKKLEDMKIELSDNFVLTV 238 (639)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (639)
+....+.+.+-+..+... |......--+.. ...-.|..+...+.+..++..-.++-....
T Consensus 98 Dli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 98 DLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred chHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 877666555533333221 211111111111 111122223333334334322111111123
Q ss_pred HHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 239 LKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMME 318 (639)
Q Consensus 239 l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 318 (639)
+..+.-...-..++.+....-.+ .||..+|.+++.+-.-+|+.+.|..++.+|+++|++.+..-|-.++-+ .++..
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 55554443334444444433334 699999999999999999999999999999999999998877777655 78888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChh----
Q 037477 319 DAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS----KSVYDGIHRALTKLGRFD---- 390 (639)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~---- 390 (639)
.+..++..|...|+.|+..|+...+-.+...+. -...+.|...+ ..++..+.++.....+++
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~----------t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ----------TKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh----------hhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 999999999999999999999988777665331 01111122211 122222222211111111
Q ss_pred -HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHHcCC--------
Q 037477 391 -EAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG--CIP-DIKTWTILIQGHCAANE-------- 458 (639)
Q Consensus 391 -~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~t~~~li~~~~~~g~-------- 458 (639)
-....+.+..-.|+......|...+.. ...|+-++..++-..|..-- ..+ ++..|..++.-|.+.-+
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~ 402 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIY 402 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 111112222222433333444333222 22566666666666554311 111 23344444444333211
Q ss_pred --------------HHHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHHHHcCCChhH
Q 037477 459 --------------VDRALLCFAKMMEKNYDADAD----------------------------LLDVLINGFLSQKRVNG 496 (639)
Q Consensus 459 --------------~~~a~~~~~~m~~~g~~~~~~----------------------------~~~~li~~~~~~g~~~~ 496 (639)
..+..++.... .||.. .-+.++..|++.-+..+
T Consensus 403 ~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 403 YAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 22211 11233334444434444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChHhHHHHHhhcCCHHHHHHHHHH
Q 037477 497 AYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-----PPFPEPFVQYISKFGTVEDASEFLKA 571 (639)
Q Consensus 497 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~ll~~~g~~~~a~~~~~~ 571 (639)
++..-+.... ..-| -.|..||+-++...+.+.|..+.++...... .|.......++.+.+...++..+++.
T Consensus 478 ~l~~~ekye~--~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 478 ILCDEEKYED--LLFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHH--HHhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4433222221 1122 3677888888888888888888887764321 12333445666778888888888887
Q ss_pred hhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 572 LSVK--E-YPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 572 ~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+.+. . +....+.-.+.+..+..|+.+...++.+-.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 7765 2 223445556677777778877777776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-09 Score=107.87 Aligned_cols=352 Identities=9% Similarity=0.074 Sum_probs=217.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC-YIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
+|+.++|.+++.++.++.+ .+...|-+|-..|-..|+.+++...+ |..... +-|...|..+-....+.|+++.+.
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 7999999999999998643 67789999999999999999988776 444443 346677888877778887777664
Q ss_pred HHHHHHHHHhhhccchh-HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCC
Q 037477 185 ALNQFHDGMVKEIAMDN-VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYK 263 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~ 263 (639)
-.|...++..+.+- ..-.-..+|.+. |+...|.+.|.++..-.+ +
T Consensus 228 ---~cy~rAI~~~p~n~~~~~ers~L~~~~------------------------------G~~~~Am~~f~~l~~~~p-~ 273 (895)
T KOG2076|consen 228 ---YCYSRAIQANPSNWELIYERSSLYQKT------------------------------GDLKRAMETFLQLLQLDP-P 273 (895)
T ss_pred ---HHHHHHHhcCCcchHHHHHHHHHHHHh------------------------------ChHHHHHHHHHHHHhhCC-c
Confidence 34555555433221 222223333333 444455555555532211 1
Q ss_pred CCHH----HHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC-------
Q 037477 264 HNTI----TYNGILRVLARHESVRDFWNVVEEMKKE-GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP------- 331 (639)
Q Consensus 264 p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------- 331 (639)
.|.. .--.++..+...++-+.|++.++..... +-..+...++.++..|.+...++.|......+....
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1111 1122344455555556666666665542 123344556666666666677777666666665422
Q ss_pred --------------------CCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHccCCh
Q 037477 332 --------------------YKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLG--NSLSKSVYDGIHRALTKLGRF 389 (639)
Q Consensus 332 --------------------~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 389 (639)
+.++...+..++ ++.... +.+....+........ ...+...|.-+..+|...|++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i-cL~~L~--~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMI-CLVHLK--ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhh-hhhccc--ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 222222211111 111112 2333334444444444 334456788888889999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037477 390 DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKM 469 (639)
Q Consensus 390 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 469 (639)
.+|+.+|..+......-+...|--+..+|...|..++|.+.|+........ +...-..|-..+-+.|+.++|.+.+..+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 999999988887755556778888888888899999999998888875422 3445556667778889999998888885
Q ss_pred HH--------cCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 470 ME--------KNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 470 ~~--------~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
.. .+..|+........+.+...|+.++-..
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 42 3345555555555666677777665433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-10 Score=114.23 Aligned_cols=283 Identities=12% Similarity=0.077 Sum_probs=201.6
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchh
Q 037477 277 ARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLG 355 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 355 (639)
...|+++.|.+.+....+. .|+ ...+-....+..+.|+.+.|.+.+.+..+.. |+..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~------------------ 152 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDN------------------ 152 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCc------------------
Confidence 4579999999999887766 344 3344555677888899999999998875431 2211
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 356 LVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
..+.-.....+...|+++.|...++.+.+.. +-+...+..+...|...|++++|.+.+..+.
T Consensus 153 -----------------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 153 -----------------ILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred -----------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0111223566778899999999999999886 4467788899999999999999999999999
Q ss_pred HCCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 436 ENGCIPDIKTWT-ILIQ---GHCAANEVDRALLCFAKMMEKNY---DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 436 ~~~~~p~~~t~~-~li~---~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
+.++. +...+. .-.. +....+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..++
T Consensus 215 k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~- 292 (409)
T TIGR00540 215 KAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK- 292 (409)
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-
Confidence 98764 333332 1112 22333333334445555554321 237888889999999999999999999999876
Q ss_pred CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH------hHHHHHhhcCCHHHHHHHHHHhhcC-CCC
Q 037477 509 RLRPWQAT---FKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE------PFVQYISKFGTVEDASEFLKALSVK-EYP 578 (639)
Q Consensus 509 ~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~g~~~~a~~~~~~~~~~-~~~ 578 (639)
.|+... .....-.....++.+.+.+.++...+. .|+.. ++..++.+.|++++|.++|+..... ..|
T Consensus 293 --~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 293 --LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred --CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 344321 112222234457888899999887763 34444 4556667899999999999964333 467
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 579 SSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+.+.+..+...+.+.|+.++|.+++++
T Consensus 369 ~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 369 DANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888999999999999999999997
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-10 Score=112.41 Aligned_cols=278 Identities=12% Similarity=0.053 Sum_probs=202.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHH
Q 037477 279 HESVRDFWNVVEEMKKEGYEMDIDT-YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLV 357 (639)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 357 (639)
.|+++.|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~---------------- 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVE---------------- 156 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHH----------------
Confidence 689999998887766542 22333 333344557889999999999988653 233221111
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 358 FRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
-.....+...|+++.|.+.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.
T Consensus 157 -------------------l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 157 -------------------ITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred -------------------HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 112456778899999999999998876 446778888999999999999999999999987
Q ss_pred CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC
Q 037477 438 GCIPDI-------KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL 510 (639)
Q Consensus 438 ~~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 510 (639)
+..++. .+|..++.......+.+...++|+.+.+. .+.+......+...+...|+.++|.+++++..+.
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--- 292 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--- 292 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 765322 13334444444555666677777776543 3457788888999999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 511 RPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
.|+.. ..++.+....++.+++++..+...+. .|+.. ++..++...+++++|.+.|+...+. .|+...|..+
T Consensus 293 ~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~~~~~~~L 367 (398)
T PRK10747 293 QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPDAYDYAWL 367 (398)
T ss_pred CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHH
Confidence 44432 22344455669999999999988864 34443 3455567889999999999999876 4677888899
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 037477 587 FESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~ 605 (639)
..++.+.|+.++|.+++++
T Consensus 368 a~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999987
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-09 Score=101.82 Aligned_cols=219 Identities=13% Similarity=0.080 Sum_probs=176.9
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
+.-.|+.-.|..-|+........++ ..|--+..+|....+.++.+..|++..+.+.. |..+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3456888899999999887753332 23777888899999999999999999987654 667788888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
..=|++.+... +-+...|..+..+.-+.+++++++..|++.++++.-. ...|+.....+...+++++|.+.|+...+
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999998875 3356667777777778999999999999999985544 45888888899999999999999999886
Q ss_pred CC-----CCCChHhH----HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 543 QN-----YPPFPEPF----VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 543 ~~-----~~p~~~~~----~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. +..+...+ ..++.-.+++..|..++++..+.+|.....|..|...-.+.|+.++|+++|++-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 21 11122222 122234489999999999999999999999999999999999999999999983
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-09 Score=95.05 Aligned_cols=237 Identities=12% Similarity=0.124 Sum_probs=131.8
Q ss_pred cCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHH
Q 037477 229 ELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD---IDTYI 305 (639)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~ 305 (639)
..+...+..+=.-+.+++++|.+.|-.|.+.. +-+..+--+|-+.|-+.|.+|.|+++.+.+.++.--+. ....-
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34444444444445689999999999996421 23455667788889999999999999999987621111 23344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 306 KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
.|..-|...|-++.|..+|..+.+.|. .-...... ++..|-.
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~Alqq-------------------------------------Ll~IYQ~ 153 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQ-------------------------------------LLNIYQA 153 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHH-------------------------------------HHHHHHH
Confidence 567778999999999999999987531 11222333 4444444
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
..+|++|.++-+++.+.+-.+.. .-|..|...+....+++.|...+.+..+.+.+ .+..--.+.+.....|+++.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQK 232 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHH
Confidence 45555555555544444322221 12334444444444555555555554443211 11122223334444555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
|.+.|+...+.+..--..+...|..+|.+.|+.++...++..+.+
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555444333334444445555555555555555554444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=122.60 Aligned_cols=258 Identities=17% Similarity=0.133 Sum_probs=108.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 306 KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
.+...+.+.|++++|+++++......-.|+.. ..|..+...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~------------------------------------~~~~~~a~La~~ 56 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDP------------------------------------EYWRLLADLAWS 56 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc------------------------------------cccccccccccc
Confidence 44667778888888888885543321112221 223334445566
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLC 465 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 465 (639)
.++.+.|.+.++++...+. -+...+..++.. ...+++++|..++.+..+.. ++...+..++..+...++++++.++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHH
Confidence 7889999999999987652 355567777776 68999999999988776543 5667788888999999999999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 466 FAKMMEKN-YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 466 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+. .|+ ......++..+...|+.+++.++++...+.
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 99987633 3567778888888999999999999999999876 454 667888899999999999999988888764
Q ss_pred C-CCCCh-HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 544 N-YPPFP-EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 544 ~-~~p~~-~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
. -.|.. ..+...+...|+.++|..+|++..+..|.|+.....+.+++...|+.++|.++.++.
T Consensus 210 ~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 210 APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3 22332 345566678899999999999999888999999999999999999999999998875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-09 Score=98.21 Aligned_cols=289 Identities=18% Similarity=0.216 Sum_probs=211.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHH
Q 037477 279 HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVF 358 (639)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 358 (639)
..+.++|.++|-+|.+.. +-+..+--+|.+.|.+.|..+.|+++.+.+.++ ||... ..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~------------------~q 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTF------------------EQ 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCch------------------HH
Confidence 568999999999999863 334555667899999999999999999998774 33211 11
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
+++ ..-.+..-|...|-+|.|+++|..+.+.| .--......|+..|-+..+|++|+++-+++.+.+
T Consensus 106 r~l-------------Al~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 106 RLL-------------ALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHH-------------HHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 111 12236667888999999999999999765 3344567789999999999999999999998876
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH
Q 037477 439 CIPDI----KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ 514 (639)
Q Consensus 439 ~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 514 (639)
-.+.. ..|--+...+....+++.|...+++..+.+.+ .+..--.+-+.+...|+++.|.+.++.+.+. +..--.
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ 249 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLS 249 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHH
Confidence 54432 23455566666678999999999999887522 2333345567888999999999999999887 333336
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--
Q 037477 515 ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF-- 591 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-- 591 (639)
.+...|..+|.+.|+.++....+..+.+....++.. .+..++....-.+.|..++.+-... .|+...+..+++.-.
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhhcc
Confidence 678889999999999999999999998865555543 2334444444455565555544443 467777777777654
Q ss_pred -hcCCHHHHHHHHhhC
Q 037477 592 -NEGRHYEAKDLLYKC 606 (639)
Q Consensus 592 -~~g~~~~A~~~~~~m 606 (639)
..|.+.+-+.++++|
T Consensus 329 aeeg~~k~sL~~lr~m 344 (389)
T COG2956 329 AEEGRAKESLDLLRDM 344 (389)
T ss_pred ccccchhhhHHHHHHH
Confidence 345678888888887
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-10 Score=115.50 Aligned_cols=276 Identities=13% Similarity=0.069 Sum_probs=184.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcCCCchhHHH
Q 037477 281 SVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP--YKPSVQDCSLLLRSISSINNPDLGLVF 358 (639)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~ 358 (639)
+..+|...|.....+ +.-+.++...+..+|...+++++|.++|+.+.+.. ..-+...|.+.|-.+.+.. .
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------~- 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------A- 405 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------H-
Confidence 467888888885554 34455777788899999999999999999887642 1224445555554332110 0
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
+.. .|..+.+.+ +-.+.+|.++.++|.-.++.+.|++.|++..+.+
T Consensus 406 ---------------------Ls~--------Laq~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 406 ---------------------LSY--------LAQDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred ---------------------HHH--------HHHHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 000 122222222 3456778888888888888888888888877754
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-H
Q 037477 439 CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD---VLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-Q 514 (639)
Q Consensus 439 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~ 514 (639)
.. ...+|+.+..-+....++|.|...|+..+.. |...|+ .|.-.|.++++++.|.-.|+...+ +.|. .
T Consensus 452 p~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~ns 523 (638)
T KOG1126|consen 452 PR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNS 523 (638)
T ss_pred Cc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccch
Confidence 22 5677777777777788888888888776643 333343 455567888888888888887754 4554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH--HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 037477 515 ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF--VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN 592 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (639)
+....+...+-+.|+.++|++++++........-...| ..++...++.++|...++++.+..|.+..+|..+...|-+
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 44555556677778888888888887764332222223 3344566888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHhhC
Q 037477 593 EGRHYEAKDLLYKC 606 (639)
Q Consensus 593 ~g~~~~A~~~~~~m 606 (639)
.|+.+.|+.-|.-+
T Consensus 604 ~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 604 LGNTDLALLHFSWA 617 (638)
T ss_pred HccchHHHHhhHHH
Confidence 88888887766553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=88.36 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK 176 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~ 176 (639)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-07 Score=88.73 Aligned_cols=467 Identities=12% Similarity=0.076 Sum_probs=292.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 037477 107 NDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAAL 186 (639)
Q Consensus 107 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 186 (639)
.++++|+-++..+.+ . ++.+...|. +|++...++.|..++++.++. ++-+...|.+.-..=-..|..+.+..+
T Consensus 390 E~~~darilL~rAve-c-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVE-C-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHH-h-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 455557777777665 1 112334443 445555666677777666554 555666665555444455544443322
Q ss_pred HHH-HHHHhhhccch--h----------------HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChH
Q 037477 187 NQF-HDGMVKEIAMD--N----------------VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPV 247 (639)
Q Consensus 187 ~~~-~~~~~~~~~~~--~----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (639)
..- ...+...|..- + ...+++....+.|..++ ....+|....+.+.. ++..+
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee--------d~~~tw~~da~~~~k-~~~~~ 533 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE--------DRKSTWLDDAQSCEK-RPAIE 533 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc--------hhHhHHhhhHHHHHh-cchHH
Confidence 110 11111111110 0 12233333322221110 011233333333322 34555
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 037477 248 KALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 248 ~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (639)
-|..+|....+ -++-+...|......--..|..++...+|++.... ++-....|-....-+-..|+...|..++.+.
T Consensus 534 carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 534 CARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 56666655532 23446667777776666677788888888887765 2445555666666677778888888888777
Q ss_pred hcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 037477 328 MDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD 407 (639)
Q Consensus 328 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 407 (639)
.+..-. +...|-..++.-.... ..+.+..++.+... ..++..+|.--+..---.+..++|.+++++..+. -|+
T Consensus 611 f~~~pn-seeiwlaavKle~en~--e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 611 FEANPN-SEEIWLAAVKLEFEND--ELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHhCCC-cHHHHHHHHHHhhccc--cHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 665322 4444544444443333 45566666655544 4566666666666666678899999999887765 444
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 408 -NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 408 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
...|-.+...+-+.++++.|...|..=.+. +.-.+..|-.+...=-+.|.+-+|..++++..-.+ +-|...|-..|.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 345666667777888888888877665443 22245678888887788899999999999988776 457888999999
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHHhhcCCHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYISKFGTVEDA 565 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~g~~~~a 565 (639)
+-.+.|..+.|..+.....+. ..-+...|..-|....+.++-....+.+++.. ..|... +...++-...+++.|
T Consensus 762 ~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999998888775 33456678887877777777666555554433 334332 233444566789999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 566 SEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.+.|.+..+..+.+-.+|..+...+.+.|.-++-.+++.++
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888886
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-09 Score=97.88 Aligned_cols=272 Identities=12% Similarity=0.061 Sum_probs=187.8
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH-----HHHHc
Q 037477 311 FQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH-----RALTK 385 (639)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~ 385 (639)
|.++|+++.|++++.-..+..-+.-...-+.|-..+...+..+...+.+..+... +..-||.-. +....
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeee
Confidence 6677788888777777665432222222222222222222223333333322221 111222211 12234
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLC 465 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 465 (639)
.|++++|.+.+++.......-....||. --.+-..|++++|++.|-++..-- .-+..+...+...|....+...|.++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 6899999999999885432222222332 234667899999999998876421 13667778888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 466 FAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
+-+.... ++-|......|...|-+.|+-..|.+.+-+--+ -..-+..+..-|...|....-++++++.|++..- +
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 8776654 566788899999999999999999888765443 2344677888888888888889999999998764 7
Q ss_pred CCChHhHHHHH----hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 037477 546 PPFPEPFVQYI----SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGR 595 (639)
Q Consensus 546 ~p~~~~~~~ll----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (639)
.|+..-|..++ .+.|++..|..+++.+..+.|.+......|++.....|.
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 79988887776 466999999999999999999999999999999887774
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-09 Score=110.02 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=177.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYS--QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA 456 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 456 (639)
...+..+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|...++++.+.... +......+...|.+.
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~ 200 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence 344557889999999999999875 55654333 3356888999999999999999987744 678888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 457 NEVDRALLCFAKMMEKNYDADA-------DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 457 g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. ...+......+..++...|+
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCC
Confidence 9999999999999998755332 23344444444555667777888877654 24467788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHh--hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 530 LEEAMNLLRLMKKQNYPPFPEPFVQYIS--KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
.++|.+++++..+. .|+. ....++. ..++.+++.+.++...+..|.++..+..+...+.+.|+|++|.+.|++..
T Consensus 279 ~~~A~~~L~~~l~~--~~~~-~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 279 HDTAQQIILDGLKR--QYDE-RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHHHhc--CCCH-HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999873 3443 3333332 44999999999999999999999999999999999999999999999974
Q ss_pred cc
Q 037477 608 HH 609 (639)
Q Consensus 608 ~~ 609 (639)
..
T Consensus 356 ~~ 357 (398)
T PRK10747 356 KQ 357 (398)
T ss_pred hc
Confidence 43
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=87.29 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 264 HNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 264 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888887764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-12 Score=120.71 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=81.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEG-YEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
.+...+.+.|++++|+++++...... .+.|...|..+.......+++++|++.++.+...+-. +.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~------------- 78 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NP------------- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-------------
Confidence 45677788889999999886554443 2335555666666777788888888888888764211 11
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
..+..++.. ...+++++|.+++...-+. .++...+..++..+...++++++..
T Consensus 79 ------------------------~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 79 ------------------------QDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ------------------------ccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHH
Confidence 123334433 4666777777776665443 3455556666677777777777777
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 430 VLDEMEENG-CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 430 ~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
+++.+.... ...+...|..+...+.+.|+.++|.+.+++.++.. +-|....+.++..+...|+.+++..++....+..
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 777765432 23455666677777777777777777777777663 2246666667777777777777777776665542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhh
Q 037477 509 RLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALS 573 (639)
Q Consensus 509 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~ 573 (639)
..+...+..+..+|...|+.++|+..+++..+ ..|+.. .+..++...|+.++|..+.+++.
T Consensus 211 --~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 --PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT----------------
T ss_pred --cCHHHHHHHHHHHhcccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 22233566666777777777777777777665 224332 33444456677777777666554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.8e-09 Score=106.02 Aligned_cols=323 Identities=14% Similarity=0.106 Sum_probs=228.5
Q ss_pred hccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 242 LRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 242 ~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 321 (639)
.+|+.++|.+++.++.++. +.+...|-+|...|-..|+.+++...+-..-... +-|...|..+.....+.|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3688888888888886543 5577888888889999998888887765554443 446788888888888888899888
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
-.|.+..+. .|+. ...+-.-+..|-+.|+...|..-|.++..
T Consensus 228 ~cy~rAI~~--~p~n------------------------------------~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 228 YCYSRAIQA--NPSN------------------------------------WELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHHhc--CCcc------------------------------------hHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 888887764 2221 11122234567888999999999999887
Q ss_pred CCCCCCHHhHH----HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 037477 402 AGFEPDNITYS----QVIFGLCKAGRFEDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY-- 474 (639)
Q Consensus 402 ~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 474 (639)
...+.|..-.. .++..+...++-+.|.+.++..... +-..+...+++++..|.+...++.|......+.....
T Consensus 270 ~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 270 LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 64322322222 3355566677778888888877652 2234566788888888888889988888877766222
Q ss_pred -------------------------CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 037477 475 -------------------------DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR--LRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 475 -------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~ 527 (639)
.++... -.++-++.+....+....+..-..+. . +.-+...|.-+.++|.+.
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhc
Confidence 222222 12223334444444444444444443 4 333467888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 528 RRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
|++.+|+.++..+......-+...| ...+...|..++|.+.++++....|.+..+-.+|...|.+.|+.++|.+.+.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999875443333333 3344577999999999999999999999999999999999999999999999
Q ss_pred hCC
Q 037477 605 KCP 607 (639)
Q Consensus 605 ~m~ 607 (639)
.|-
T Consensus 508 ~~~ 510 (895)
T KOG2076|consen 508 QII 510 (895)
T ss_pred ccc
Confidence 974
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-09 Score=96.73 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=213.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHH
Q 037477 279 HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVF 358 (639)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 358 (639)
.|++.+|+++..+-.+.+ +-....|..-..+--..|+.+.+-.++.+..+.
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---------------------------- 147 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---------------------------- 147 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc----------------------------
Confidence 578888888887776665 223444556666666777777777777776543
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
...++..++-+..+.....|+.+.|..-.+++.+.+ +.++........+|.+.|++..+..++..|.+.|
T Consensus 148 ---------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 148 ---------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred ---------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 122233345556677788899999999999988876 5567788899999999999999999999999988
Q ss_pred CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC
Q 037477 439 CIPDI-------KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR 511 (639)
Q Consensus 439 ~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (639)
.--|. .+|+.+++-....+..+.-...|+..... .+-+...-.+++.-+..+|+.++|.++..+..++ +..
T Consensus 218 ~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D 295 (400)
T COG3071 218 LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWD 295 (400)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccC
Confidence 76554 46788888777777777766777776554 3556777778888999999999999999998887 555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChH-hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037477 512 PWQATFKTLIEKLLGARRLEEAMNLLRLMKK-QNYPPFPE-PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFES 589 (639)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~-~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 589 (639)
|+ -+..-.+.+-++.+.-++..++-.+ .+..|+.. |+..++.+.+.+.+|..+|+...+ ..|+..+|..+.++
T Consensus 296 ~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~ 370 (400)
T COG3071 296 PR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADA 370 (400)
T ss_pred hh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHH
Confidence 55 2223346677888877777776554 56666543 556666799999999999996665 47899999999999
Q ss_pred HHhcCCHHHHHHHHhh
Q 037477 590 FFNEGRHYEAKDLLYK 605 (639)
Q Consensus 590 ~~~~g~~~~A~~~~~~ 605 (639)
|.+.|+.++|.+..++
T Consensus 371 ~~~~g~~~~A~~~r~e 386 (400)
T COG3071 371 LDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHcCChHHHHHHHHH
Confidence 9999999999999887
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-06 Score=87.40 Aligned_cols=449 Identities=13% Similarity=0.058 Sum_probs=224.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
..+...-.+++....+. ++.++..|-..+. ....+.|..++....+- ++.+... .-++++..-++.+.
T Consensus 359 E~~~~~K~RVlRKALe~--iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s~dL----wlAlarLetYenAk- 426 (913)
T KOG0495|consen 359 ESDTKNKKRVLRKALEH--IPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQSMDL----WLALARLETYENAK- 426 (913)
T ss_pred hhHHHHHHHHHHHHHHh--CCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHH-
Confidence 45555566777777662 3346667765443 34556688887777664 2333333 34455554444444
Q ss_pred HHHHHHHHhhhc-cchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC
Q 037477 186 LNQFHDGMVKEI-AMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH 264 (639)
Q Consensus 186 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p 264 (639)
.+++...+.- ..+.++..-..+--..|..+.+.+.+++- +.++ ...|+..
T Consensus 427 --kvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg------------l~~L---------------~~ngv~i 477 (913)
T KOG0495|consen 427 --KVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG------------LSEL---------------QANGVEI 477 (913)
T ss_pred --HHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH------------HHHH---------------hhcceee
Confidence 4455554432 22334433333333344444444444431 1111 2345555
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEM--DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
|...|-.=...|-+.|.+-.+..+......-|++- --.||..-...|.+.+.++-|..+|....+-- .-+...|...
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra 556 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRA 556 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHH
Confidence 55555555555555555555555555555544432 23456666666666666666666666555421 1112222221
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG 422 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 422 (639)
.. .....+..+....++......- +-....|-....-+-..|++..|..++.+..+.. +.+...|-+-+..-..+.
T Consensus 557 ~~--~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~ 632 (913)
T KOG0495|consen 557 AM--FEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEND 632 (913)
T ss_pred HH--HHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccc
Confidence 11 1111122333333333333221 1223334444445555666666666666666554 224556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 501 (639)
++++|..+|.+.... .|+...|.--+..-.-.++.++|.+++++.++. -|+ ...|..+-+.+-+.++++.|...|
T Consensus 633 e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 633 ELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred cHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 666666666666553 355555555555555566666666666666554 222 334445555566666666666665
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH---hhcCCHHHHHHHHHHhhcCCC
Q 037477 502 VEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI---SKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 502 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~ 577 (639)
..-.+. .|+ +..|-.+.+.=.+.|.+-+|..++++..-.+. -+..-|...+ .+.|+.+.|..+..+..+..|
T Consensus 709 ~~G~k~---cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 709 LQGTKK---CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred Hhcccc---CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 543322 222 33455555555556666666666666554321 1222333333 355666666665555555555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 578 PSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 578 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.+...|.--|....+.++-....+.++++.+
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 5555554444444444444444444444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-09 Score=98.94 Aligned_cols=260 Identities=13% Similarity=0.066 Sum_probs=199.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHhhc
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP-Y-KPSVQDCSLLLRSISSI 349 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~~~~~ll~~~~~~ 349 (639)
+..++-...+.+++++-.+.....|.+.+...-+....+.....+++.|+.+|+++.++. . --|..+|..++-.- .
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 345566666788888888888888877666665666666677888999999999988762 1 12455666655332 2
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
....+.-..+..-.+ .+.-+.|+..+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|++
T Consensus 311 ~~skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 211111111111111 22334577778888999999999999999999876 4456789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC
Q 037477 430 VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR 509 (639)
Q Consensus 430 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (639)
-++...+-... |-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|-++|.+.++.++|.+.|.....-.
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99999986543 88899999999999999999999999998864 5588999999999999999999999999988752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 510 LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
..+...|..+.+.|-+.++.++|.+.+.+..+
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33567899999999999999999999988765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-07 Score=90.97 Aligned_cols=196 Identities=14% Similarity=0.060 Sum_probs=157.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
.|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-+++.++-+ +.|-..|-.|-++|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 34555666777888999999999999987644 56789999999999999999999999999875 56888999999999
Q ss_pred HcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHhhcCCHHHH
Q 037477 489 LSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP--EPFVQYISKFGTVEDA 565 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~g~~~~a 565 (639)
.-.+...-|+-+|++... ++| |...|.+|-+.|.+.++.++|++.|+.....|-.-.. ..+..+..+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999998865 345 5889999999999999999999999999875533111 2334556788999999
Q ss_pred HHHHHHhhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 566 SEFLKALSVK-------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 566 ~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
..++++..+. .+....+..-|..-+.+.+++++|..+..+....
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9998877652 2223444555788889999999999877765433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-07 Score=88.40 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=180.8
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++.+.|-++..+..+..| .++...+-+........|+.+.|..-++.+.+.+ +-+.........+|.+.|++.....+
T Consensus 132 gd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 132 GDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred ccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHH
Confidence 444455555555543322 4566677777788899999999999999998876 55778889999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG 403 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (639)
...|.+.|+-.+... .++- ..+|+.+++-....+..+.-...++.....
T Consensus 210 l~~L~ka~~l~~~e~-------------------~~le-----------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~- 258 (400)
T COG3071 210 LPKLRKAGLLSDEEA-------------------ARLE-----------QQAWEGLLQQARDDNGSEGLKTWWKNQPRK- 258 (400)
T ss_pred HHHHHHccCCChHHH-------------------HHHH-----------HHHHHHHHHHHhccccchHHHHHHHhccHH-
Confidence 999998876544321 1111 124555666655555555555566555433
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 404 FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
.+.++..-.+++.-+..+|+.++|.++..+..+.+..|+.. ..-.+.+-++.+.-.+..++-.+.. +-+...+..
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~t 333 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLST 333 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHH
Confidence 24455566677777888888888888888888777666522 2234456677766666666655532 234466777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++....
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888886654 4778888888888888888888888888876643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-09 Score=107.32 Aligned_cols=201 Identities=7% Similarity=-0.005 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
...+|.++.++|.-.++.+.|++.|++..+.. +-..++|+.+..-+.....+|.|...|+..+ ..|...|++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnA--- 491 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNA--- 491 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHH---
Confidence 56799999999999999999999999998763 2278889999988999999999999998775 345555554
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
|-.+...|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.
T Consensus 492 -------------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 492 -------------------------------WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred -------------------------------HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhh
Confidence 3335667889999999999999888775 44667777788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
|+|+.++++......+ |+..--..+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+
T Consensus 540 d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 9999999998876554 5555555667777888999999999998876 2334566777778899999999999888887
Q ss_pred HHh
Q 037477 505 IEK 507 (639)
Q Consensus 505 ~~~ 507 (639)
.+-
T Consensus 618 ~~l 620 (638)
T KOG1126|consen 618 LDL 620 (638)
T ss_pred hcC
Confidence 653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-08 Score=100.77 Aligned_cols=290 Identities=13% Similarity=0.038 Sum_probs=144.5
Q ss_pred HhccChHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 241 ELRIYPVKALGFFRWVGEHSGYKHN-TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMED 319 (639)
Q Consensus 241 ~~~~~~~~A~~~f~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 319 (639)
...|+++.|.+.+....+ ..|+ ...+-.....+.+.|+.+.|.+.+.+..+..-.+.....-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 335777777777766532 2343 233334455666777777777777777654212222233334666677777777
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 037477 320 AVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (639)
|...++.+.+.. |+ +..++..+...+...|++++|.+++..+
T Consensus 172 Al~~l~~l~~~~--P~------------------------------------~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 172 ARHGVDKLLEMA--PR------------------------------------HKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HHHHHHHHHHhC--CC------------------------------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776542 22 1123334555566666666666666666
Q ss_pred HHCCCCCCHHhHH-HHHHHH---HhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 400 KNAGFEPDNITYS-QVIFGL---CKAGRFEDACNVLDEMEENGC---IPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 400 ~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.+.++. +...+. .-..++ ...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.
T Consensus 214 ~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 214 AKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 665533 222221 111111 222222222333333333221 125556666666666666666666666666654
Q ss_pred CCCCCHHHH-HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 473 NYDADADLL-DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 473 g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
........+ ....-.....++.+.+.+.++...+...-.|+.....++-..|.+.|++++|.+.|+........|+...
T Consensus 293 ~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 293 LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 321111110 1111112233555566666665554433333213344555566666666666666664332223444433
Q ss_pred H---HHHHhhcCCHHHHHHHHHHh
Q 037477 552 F---VQYISKFGTVEDASEFLKAL 572 (639)
Q Consensus 552 ~---~~ll~~~g~~~~a~~~~~~~ 572 (639)
+ ..++.+.|+.++|.+++++.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 33335566666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-06 Score=80.59 Aligned_cols=360 Identities=13% Similarity=0.114 Sum_probs=245.4
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++...|..+|.+-. ...|+..+|++.|+.=.+-+.++.|..+++...-. .|++.+|-.....=-+.|....+..+
T Consensus 155 gNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 155 GNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44556777776553 46899999999999999999999999999998865 69999999988888899999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHH-----
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSIN--NPDLGLVFRVANKYESLG-NSLSKSVYDGIHRALTKLGRFDEAEKM----- 395 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~----- 395 (639)
|+...+. -.|...-..++.+++.-. ..+.+.+..++.-....- .......|.....-=-+-|+.....+.
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 9887653 122333333444443211 112233333333222211 111234455454444455665444333
Q ss_pred ---HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH--------HHHHHcCCHHHH
Q 037477 396 ---MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KTWTILI--------QGHCAANEVDRA 462 (639)
Q Consensus 396 ---~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~li--------~~~~~~g~~~~a 462 (639)
++.+...+ +-|-.+|-..++.-...|+.+...++|++.+.. +.|-. ..|..-| -.=....+++.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444443 456677888888888889999999999998864 33311 1222211 111356789999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFL----SQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
.++++..++. ++....||.-+--+|+ ++.++..|.+++.... |..|...+|...|..=.+.+.++.+..+++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999884 4556677776655554 6788999999998775 778888899999999999999999999999
Q ss_pred HHHhCCCCCChH-h---HHHHHhhcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcccc-
Q 037477 539 LMKKQNYPPFPE-P---FVQYISKFGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIR- 611 (639)
Q Consensus 539 ~m~~~~~~p~~~-~---~~~ll~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~- 611 (639)
+..+-+ |... + |..+-...|+.+.|..+|....+. .......|...|+.=...|.++.|..++++......
T Consensus 462 kfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 462 KFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 999843 5432 3 333446789999999999988765 223445677777777889999999999998633322
Q ss_pred CChhHHH
Q 037477 612 QDSKISL 618 (639)
Q Consensus 612 ~~~~~~~ 618 (639)
...|+++
T Consensus 540 ~kvWisF 546 (677)
T KOG1915|consen 540 VKVWISF 546 (677)
T ss_pred chHHHhH
Confidence 2245554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-07 Score=86.65 Aligned_cols=428 Identities=11% Similarity=0.121 Sum_probs=254.6
Q ss_pred CCChHHHHHHHHHHhhcCC-CCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhh
Q 037477 106 DNDPEKASAFFNWVCDKKQ-FRPS--STVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASD 182 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 182 (639)
...+..|++++.....+-+ +..+ ....|.+--.+.+.|+++.|+..|+...+.. |+..+-..|+-.+..-| +
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~---d 324 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIG---D 324 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecC---c
Confidence 4789999999998877421 1111 1234444445778999999999999887764 77666444444433343 6
Q ss_pred HHHHHHHHHHHhhhccc----------hhHHHHHHHHHhcCCc--------hHHHHHHHhhc-----c-CcC----CHHH
Q 037477 183 LAALNQFHDGMVKEIAM----------DNVAKTLVDVVLGSDW--------DDKIGKKLEDM-----K-IEL----SDNF 234 (639)
Q Consensus 183 ~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~--------~~~~~~~~~~~-----~-~~~----~~~~ 234 (639)
++..++.|..++.-... ++.-..|++--.+... -..+++.+-.. + +.+ .+.+
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 66677777777653111 0111122221111111 11111111111 0 111 1122
Q ss_pred HHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh
Q 037477 235 VLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQF-QK 313 (639)
Q Consensus 235 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~ 313 (639)
.+..+... .+.+.|. +.. .| -..-|.+.|+++.|.+++.-+.+..-+.-...-+.|-..+ .+
T Consensus 405 cle~lk~s-~~~~la~--------------dle-i~-ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 405 CLESLKAS-QHAELAI--------------DLE-IN-KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred HHHHHHHh-hhhhhhh--------------hhh-hh-HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence 22222211 1111111 110 11 1234678888888888888877664222222223332222 22
Q ss_pred -cCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc-----CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 037477 314 -FRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI-----NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 314 -~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 387 (639)
-.++..|.++-+..+.. .-||.. +.... .++|.+.+...+.+.......-....||.=+ .+-..|
T Consensus 468 ggk~~~~aqqyad~aln~------dryn~~--a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~ 538 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNI------DRYNAA--ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALG 538 (840)
T ss_pred cccchhHHHHHHHHHhcc------cccCHH--HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhc
Confidence 34567777766655432 112211 11111 1345666666666655443333333444322 456789
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
++++|++.|-.+... +..+..+...+...|-...+...|++++.+.... +..|+...+.|...|-+.|+-..|.+++-
T Consensus 539 ~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred CHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 999999998776532 1345667777888899999999999998776543 33477889999999999999999998876
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCC
Q 037477 468 KMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLL-GARRLEEAMNLLRLMKKQNYP 546 (639)
Q Consensus 468 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~ 546 (639)
+--.. ++.+..+...|...|....-+++++.+|+... -+.|+..-|..||..|. +.|++++|.++++...+. ++
T Consensus 617 dsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp 691 (840)
T KOG2003|consen 617 DSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP 691 (840)
T ss_pred hcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc
Confidence 55443 46688888889889999999999999999864 57999999999987665 589999999999998764 55
Q ss_pred CChHhHHHHHhhcCCH--HHHHHHHHH
Q 037477 547 PFPEPFVQYISKFGTV--EDASEFLKA 571 (639)
Q Consensus 547 p~~~~~~~ll~~~g~~--~~a~~~~~~ 571 (639)
-|...+.-+..-+|++ .++.++-++
T Consensus 692 edldclkflvri~~dlgl~d~key~~k 718 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGLKDAKEYADK 718 (840)
T ss_pred cchHHHHHHHHHhccccchhHHHHHHH
Confidence 5655555555444443 334444333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-09 Score=110.72 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=170.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 258 EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 258 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
+..|+.||.+||..+|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+. .|...
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 46799999999999999999999999999 9999998888889999999999988888887765 68889
Q ss_pred HHHHHHHHHhhcCCCc-hhHHHHHHHH----HHhcCCCCChhhHH--------------HHHHHHHccCChhHHHHHHHH
Q 037477 338 DCSLLLRSISSINNPD-LGLVFRVANK----YESLGNSLSKSVYD--------------GIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~--------------~li~~~~~~g~~~~A~~~~~~ 398 (639)
||+.|+.+|...|+.. .+.+.+.+.. +...|+......+- ..+.-....|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999877433 2222221111 11122211111111 111222223333444444333
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD 477 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 477 (639)
+...... . +...+++-+.... .+++-..+-....+ .|+..+|..++..-...|+++.|..++.+|.+.|++.+
T Consensus 165 ~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 165 VPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 3211100 0 0111233333322 23333333333332 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
..-|..|+-+ .++...+..+...|.+. |+.|+..|+...+..+..+|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 9988888866 78888888888888887 999999999988888887665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=96.03 Aligned_cols=192 Identities=17% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...|...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 34444444444555555555444443321 123344444444455555555555555444432 2233344444444555
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-Hh---HHHHHhhcCCHHHHH
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EP---FVQYISKFGTVEDAS 566 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~ll~~~g~~~~a~ 566 (639)
.|++++|...|++..+..........+..+...+...|++++|.+.+++..+.. |+. .. +..++...|+.++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555544321111122234444444555555555555555554421 211 11 112223445555555
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 567 EFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.++++..+..+.+...+..+...+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555444445555555566666666666666665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-06 Score=79.47 Aligned_cols=463 Identities=10% Similarity=0.067 Sum_probs=247.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSS-TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
++....|..+|+.+.... |-+ ..|---+..=-..|++..|.++|+.-.+- .||...|.+.|+.=.+.+ +..
T Consensus 120 nk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyk---eie 191 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYK---EIE 191 (677)
T ss_pred hhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhh---HHH
Confidence 345566666666655522 222 23333333333445666666666655443 466666666666555553 333
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhc----cCcCCHHHHHHHH---HHhccChHHHHHHHHHHh
Q 037477 185 ALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDM----KIELSDNFVLTVL---KELRIYPVKALGFFRWVG 257 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l---~~~~~~~~~A~~~f~~~~ 257 (639)
.+..+|+..+-..+....+-.....=-+.|....+..++... +...-...+.-.+ ...+...+.|.-+|.-..
T Consensus 192 raR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 192 RARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554443333223333333334444444333333322 2111111111111 222344556666666554
Q ss_pred ccCCCCCC--HHHHHHHHHHHHcCCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 037477 258 EHSGYKHN--TITYNGILRVLARHESVRDFWNV--------VEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 258 ~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (639)
+. ++.+ ...|......=-+-|+.....+. ++.+.+.+ +-|-.+|-..+..--..|+.+...++|+..
T Consensus 272 d~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 272 DH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred Hh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 2222 44555555444455554433332 34444443 557778877788777888999999999888
Q ss_pred hcCCCCCCH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 037477 328 MDGPYKPSV--QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE 405 (639)
Q Consensus 328 ~~~g~~p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (639)
... ++|-. ..|.-.|-.. .|-.+-.=....|++.+.++++...+. ++
T Consensus 349 Ian-vpp~~ekr~W~RYIYLW-----------------------------inYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 349 IAN-VPPASEKRYWRRYIYLW-----------------------------INYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred Hcc-CCchhHHHHHHHHHHHH-----------------------------HHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 764 33311 0011100000 000111112346677777777776663 34
Q ss_pred CCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 406 PDNITYSQVIFGL----CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 406 ~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
....|+.-+=-+| .+..++..|.+++...+. .-|-..+|..-|..=.+.+++|.+..++++.++.+ +-|..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 4445554443333 356677777777776553 34677777777777777888888888888887765 3466666
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHHh---
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYIS--- 557 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~--- 557 (639)
......-...|+.+.|..+|.-......+......|-+.|+-=...|.+++|..+++.+.+. ...+.+.+|..+-.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccc
Confidence 66666666778888888888777665334444556666666666778888888888877762 23333334433321
Q ss_pred --hcC-----------CHHHHHHHHHHhhcC--CCCCHHHHHHHHHH----HHhcCCHHHHHHHHhhCCccccCC
Q 037477 558 --KFG-----------TVEDASEFLKALSVK--EYPSSAAYLQVFES----FFNEGRHYEAKDLLYKCPHHIRQD 613 (639)
Q Consensus 558 --~~g-----------~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~m~~~~~~~ 613 (639)
+.| .+..|..+|+..... ...+.+--..|+.+ =...|...+...+-.+||+.+.+.
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKr 629 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKR 629 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhh
Confidence 223 556677777766543 11112322233333 344566666666666777665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-08 Score=104.43 Aligned_cols=215 Identities=10% Similarity=0.011 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHH---------cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037477 246 PVKALGFFRWVGEHSGYKH-NTITYNGILRVLA---------RHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR 315 (639)
Q Consensus 246 ~~~A~~~f~~~~~~~~~~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 315 (639)
.++|+.+|++..+. .| +...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|
T Consensus 277 ~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45677777766432 33 3344444443332 2233566666666666553 335555666666666666
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
++++|...|++..+. .|+ +...+..+..++...|++++|...
T Consensus 353 ~~~~A~~~~~~Al~l--~P~------------------------------------~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPI------------------------------------SADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred CHHHHHHHHHHHHHh--CCC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666665442 121 112233344455556666666666
Q ss_pred HHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 037477 396 MKAMKNAGFEPD-NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY 474 (639)
Q Consensus 396 ~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 474 (639)
+++..+.. |+ ...+..++..+...|++++|...+++..+....-+...+..+...+...|+.++|...+.++....
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~- 471 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE- 471 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-
Confidence 66665542 22 112222333344455666666666555443211123334445555556666666666665544331
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 475 DADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..+....+.+...|...| +.|...++.+.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 112222333333444444 3555555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-08 Score=91.95 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. |+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~---------- 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PN---------- 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----------
Confidence 4555666666666777777777776665542 3345555666666666666666666666554321 10
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-PDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~ 424 (639)
+...+..+...+...|++++|.+.+++....... .....+..+...+...|++
T Consensus 98 --------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 98 --------------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred --------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 1112333444455555555555555555442111 1122333344444455555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
++|...+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 152 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 152 DKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555554443211 2334444444444445555554444444443 1223333333444444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-05 Score=79.66 Aligned_cols=432 Identities=11% Similarity=0.110 Sum_probs=226.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
+++....++.|+.+....++......|...|...-..+-++-++.+|+.-.+. ++..-.--|..++..++++++.
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa- 189 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA- 189 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH-
Confidence 45666666666666665555555566666666666666666666666666553 3333555556666666555543
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCC--chHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSD--WDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYK 263 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~ 263 (639)
+.+..++......+ .+++.. ...+..+.+.+.+.......+ -.+++.+. +.-
T Consensus 190 --~~la~vln~d~f~s-------k~gkSn~qlw~elcdlis~~p~~~~slnv--------------daiiR~gi---~rf 243 (835)
T KOG2047|consen 190 --QRLATVLNQDEFVS-------KKGKSNHQLWLELCDLISQNPDKVQSLNV--------------DAIIRGGI---RRF 243 (835)
T ss_pred --HHHHHhcCchhhhh-------hcccchhhHHHHHHHHHHhCcchhcccCH--------------HHHHHhhc---ccC
Confidence 22333322111000 000000 000111111111111111111 22232221 112
Q ss_pred CC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh--cCCCCCCHHHH
Q 037477 264 HN--TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM--DGPYKPSVQDC 339 (639)
Q Consensus 264 p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~g~~p~~~~~ 339 (639)
+| ...|++|.+.|.+.|.++.|.++|++.... ..++.-|+.+.++|+....-.-+..+= +. +.|-.-+...+
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL 319 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH
Confidence 33 357999999999999999999999998776 345666777777776533222111111 10 11111111111
Q ss_pred -------HHHHH-------H-HhhcCC--------------CchhHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHc
Q 037477 340 -------SLLLR-------S-ISSINN--------------PDLGLVFRVANKYESLGN-----SLSKSVYDGIHRALTK 385 (639)
Q Consensus 340 -------~~ll~-------~-~~~~~~--------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~ 385 (639)
..++. . +.+... .+.++....+.+..+.-. ..-...|..+...|-.
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 11111 0 111111 112222223333222111 0112457888889999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-------CHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCKAGRFEDACNVLDEMEENG----------CIP-------DIKT 445 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~p-------~~~t 445 (639)
.|+++.|..+|++..+...+-- ..+|..-..+=.+..+++.|+++.+.....- -.| +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999886543321 2355555566667788888888887764321 111 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKL 524 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~ 524 (639)
|...++.--..|-++....+++++++..+.......| ...-+-.+.-++++.+++++-..-+. -|+ -..|+..+.-+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHH
Confidence 6666777777888889999999998876532222222 11123344456778887775443321 233 23455555444
Q ss_pred Hh---cCCHHHHHHHHHHHHhCCCCCChH-hHHHHH----hhcCCHHHHHHHHHHhhcC
Q 037477 525 LG---ARRLEEAMNLLRLMKKQNYPPFPE-PFVQYI----SKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 525 ~~---~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll----~~~g~~~~a~~~~~~~~~~ 575 (639)
.+ ..+++.|..+|++..+ |++|... |+-.++ ...|....|..++++....
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 33 3467888999998888 6766554 332233 2446666666666654443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-08 Score=98.06 Aligned_cols=234 Identities=16% Similarity=0.129 Sum_probs=167.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHC-----CC-CCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNA-----GF-EPDNIT-YSQVIFGLCKAGRFEDACNVLDEMEEN-----GCI 440 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 440 (639)
..+...+..+|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++..- |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666899999999999999999987754 21 233332 344677889999999999999998642 322
Q ss_pred -C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHhCC--
Q 037477 441 -P-DIKTWTILIQGHCAANEVDRALLCFAKMME-----KNY-DADA-DLLDVLINGFLSQKRVNGAYKLLVEMIEKVR-- 509 (639)
Q Consensus 441 -p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 509 (639)
| -..+++.|...|.+.|++++|...+++..+ .|. .|.+ ..++.+...|...+++++|..+++...+.+-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 234677788889999999999988887765 122 2222 2355667788999999999999987665422
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCChH-hH---HHHHhhcCCHHHHHHHHHHhhcC
Q 037477 510 LRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQ----NY--PPFPE-PF---VQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 510 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p~~~-~~---~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
..++ ..+|+.|-..|...|++++|.+++++.... +- .+... .+ ...+.+.+..++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 458899999999999999999999988752 11 12211 22 22234667777777776654322
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 576 -------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 576 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|....+|..|...|.+.|++++|.++.++.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4455678999999999999999999998773
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-06 Score=84.62 Aligned_cols=242 Identities=12% Similarity=0.076 Sum_probs=174.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+-.-|.++...|+..+-..+=.+|.+.- +....+|-++.--|...|+..+|.+.|.+...-... =...|-.+...|+-
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~ 358 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAG 358 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhh
Confidence 3344556777777777777777777763 445788988888888889999999999887654322 24678888899999
Q ss_pred cCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 037477 456 ANEVDRALLCFAKMMEK--NY-DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLE 531 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~--g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 531 (639)
.|..|+|...+...-+. |. .| ..|.. --|.+.+..+-|.++|.+... +.|+ +..++-+--.....+.+.
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP--~LYlg--mey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLP--SLYLG--MEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcch--HHHHH--HHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhH
Confidence 99999999888877663 32 22 22322 347778899999999988764 4443 445555544455678889
Q ss_pred HHHHHHHHHHhC---------CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 532 EAMNLLRLMKKQ---------NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 532 ~A~~~~~~m~~~---------~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
+|..+|+..... ...|...-+...+.+++.+++|+..+++.....|.++.+|.++.-.|...|+++.|++.
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 999988877621 02233444556667899999999999999999999999999999999999999999999
Q ss_pred HhhCCccccCChhHHHhhhccCCC
Q 037477 603 LYKCPHHIRQDSKISLLFGSAKSN 626 (639)
Q Consensus 603 ~~~m~~~~~~~~~~~~l~~~~~~~ 626 (639)
|++-..-.+.+..++.+++.+...
T Consensus 512 fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHh
Confidence 999644444454555555544433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-06 Score=88.05 Aligned_cols=286 Identities=13% Similarity=0.084 Sum_probs=190.9
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc-----CC
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDT-YIKISRQFQKF-----RM 316 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~-----g~ 316 (639)
.|++++|++.++.-. ..+......+......+.+.|+.++|..++..+.+++ |+... |..+..+..-. ..
T Consensus 17 ~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 17 AGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred CCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccccc
Confidence 478888888887652 3334445666777888999999999999999999985 55555 45555554222 25
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 037477 317 MEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMM 396 (639)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 396 (639)
.+....+|+++...- |.......+.=.+.. |..=...+...+......|++ .+|+.+-..|....+.+-..+++
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 777888888886542 332222111111110 100011222333333344433 35677777777666666666666
Q ss_pred HHHHHC----C----------CCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 037477 397 KAMKNA----G----------FEPDNI--TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEV 459 (639)
Q Consensus 397 ~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~ 459 (639)
...... + -+|+.. ++.-+...|-..|++++|++..++.++.. |+ +..|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence 665432 1 124443 34556677888999999999999988864 54 66888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHH
Q 037477 460 DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQA------TF--KTLIEKLLGARRLE 531 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------~~--~~li~~~~~~g~~~ 531 (639)
.+|.+.++...+.. .-|...-+-....+.++|++++|.+++....+. +..|-.. .| .....+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999998876 447788888888999999999999999888765 4333321 22 34467888999999
Q ss_pred HHHHHHHHHHh
Q 037477 532 EAMNLLRLMKK 542 (639)
Q Consensus 532 ~A~~~~~~m~~ 542 (639)
.|++-|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 98887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-05 Score=73.64 Aligned_cols=443 Identities=10% Similarity=0.055 Sum_probs=235.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 037477 107 NDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAAL 186 (639)
Q Consensus 107 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 186 (639)
.|+..|+.+++.-.. .+-.-...+--.+...+...|++++|...|.-..+.. .++...+..|--...-.|++.++..+
T Consensus 36 rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 678888888776654 1111111112223445567899999999998777654 34555555554444445555555322
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCH
Q 037477 187 NQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNT 266 (639)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~ 266 (639)
.... ...|--..-+.++-.+.++.......-..++........+..+.-++.++.+|+++|.++... .|+-
T Consensus 114 ---~~ka---~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey 184 (557)
T KOG3785|consen 114 ---AEKA---PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEY 184 (557)
T ss_pred ---HhhC---CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Chhh
Confidence 2222 122223334445555666666555555555555555556666677788999999999999633 4555
Q ss_pred HHHHHHHH-HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 267 ITYNGILR-VLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 267 ~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
...|.-+. +|.+..-++-+.++++.-.+. ++.+....|.......+.=.-..|.+-..++.+.+-+. |.. +.-
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f-~~~ 258 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPF-IEY 258 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chh-HHH
Confidence 55665543 456777778888888776654 23344445544443333212122222223332221110 100 011
Q ss_pred HhhcC---CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH--Hh
Q 037477 346 ISSIN---NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL--CK 420 (639)
Q Consensus 346 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~ 420 (639)
+++.. -.+-+.+.+++-.+.+. -| ..--.++--|.+.+++.+|..+.+++. +.++.-| ++.+. +.
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey--ilKgvv~aa 328 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY--ILKGVVFAA 328 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH--HHHHHHHHH
Confidence 11100 01112233333222221 11 112234556778888888888877764 2223222 22222 22
Q ss_pred cC-------CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 421 AG-------RFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 421 ~g-------~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
.| .+.-|.+.|+-.-.++..-| +.--.++...+.-..++++++-.++.+...-..-|...+ .+.++++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 22 34456666665555443322 223345555666666778888777777765333344443 4567788888
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh----hcCCHHHHHH
Q 037477 493 RVNGAYKLLVEMIEKVRLRPWQATFKTL-IEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS----KFGTVEDASE 567 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~----~~g~~~~a~~ 567 (639)
.+.+|.++|-.+... .+ .|..+|..+ .++|.+.|+++-|++++-++. -+.+..++..+++ +++.+=-|.+
T Consensus 408 ny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 408 NYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred ChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776432 22 344555544 467778888887777654443 3334445555552 5566666677
Q ss_pred HHHHhhcCCCCCHHHH
Q 037477 568 FLKALSVKEYPSSAAY 583 (639)
Q Consensus 568 ~~~~~~~~~~~~~~~~ 583 (639)
.|+.+... .|+++.|
T Consensus 483 AFd~lE~l-DP~pEnW 497 (557)
T KOG3785|consen 483 AFDELEIL-DPTPENW 497 (557)
T ss_pred hhhHHHcc-CCCcccc
Confidence 77666554 3344444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-07 Score=96.64 Aligned_cols=216 Identities=10% Similarity=-0.059 Sum_probs=150.7
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
..+++++|...+++..+.. +-+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456889999999988875 446778888888888999999999999999887532 46678888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.+++..+.... +...+..++..+...|++++|...+++..+. . .|+ ...+..+..++...|+.++|.+.+.++...
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99999887533 2233334444566688999999999988764 1 243 445666777888999999999999887653
Q ss_pred CCCCChHhHHHHH--hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 544 NYPPFPEPFVQYI--SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 544 ~~~p~~~~~~~ll--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.|+.......+ ...+.-+.|...++.+.+...........+...|.-.|+.+.+..+ +++.+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred --cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 45544443333 1233336888878877765222221222244555556776666655 77643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-08 Score=90.36 Aligned_cols=226 Identities=13% Similarity=0.089 Sum_probs=188.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTW-TILIQGH 453 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~li~~~ 453 (639)
.-+-|..+|.+.|.+.+|++.|+.-.+. .|-+.||-.|-+.|.+..+++.|+.++.+-.+. .|-.+|| .-+.+.+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 3456889999999999999999988877 677788999999999999999999999988765 3655665 4577888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEA 533 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 533 (639)
...++.++|.++++...+.. ..++....++...|.-.++.+-|+.+++++.+- |+. +...|+.+--+|.-.++++-+
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhh
Confidence 88999999999999998864 456667777778888899999999999999987 653 456888888888889999999
Q ss_pred HHHHHHHHhCCCCCChH--hH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 534 MNLLRLMKKQNYPPFPE--PF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 534 ~~~~~~m~~~~~~p~~~--~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
+--|++....--.|+.. .| ..+....|++..|.+.|+.....++.+.+.++.|.-.-.+.|+.++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99999988754445433 22 2223467999999999999999999999999999999999999999999998743
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-07 Score=92.78 Aligned_cols=247 Identities=15% Similarity=0.135 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKE-----GY-EMDIDT-YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
-..+...+...|...|+++.|..+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i------- 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI------- 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence 3456666999999999999999999887654 21 233333 445778899999999999999988642
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC-----CCC-CCH-Hh
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA-----GFE-PDN-IT 410 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-~~~-~~ 410 (639)
.........+.-..+++.|..+|.+.|++++|...++...+- |.. |.+ ..
T Consensus 271 -----------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 271 -----------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred -----------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 111111111222346777888999999999988887776432 211 222 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCC
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEEN---GCIPD----IKTWTILIQGHCAANEVDRALLCFAKMMEK-----N--YDA 476 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~ 476 (639)
++.+...|+..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.+++++.+.. | ..-
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 566778889999999999999876431 11222 357899999999999999999999988762 1 112
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH---hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 477 DADLLDVLINGFLSQKRVNGAYKLLVEMIE---KVRL-RPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
....++.|-..|.+.+++.+|.++|.+... ..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 245577788889999999999999886443 2222 333 5688999999999999999999988776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-07 Score=89.80 Aligned_cols=216 Identities=10% Similarity=-0.051 Sum_probs=154.2
Q ss_pred cCChhHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAG-FEPD--NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
.+..+.+..-+.++.... ..|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345666777777776432 1222 345777788899999999999999999887543 678999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...|++.++.. +-+..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999864 335677788888889999999999999998875 44432222222234456789999999977654
Q ss_pred CCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 543 QNYPPFPEPFVQYISKFGTVEDASEFLKALSVK-------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 543 ~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.. .|+...+.......|+.+.+ ..++.+.+. .+...+.|..+...|.+.|++++|...|++...
T Consensus 194 ~~-~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 194 KL-DKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred hC-CccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 33322233333345666554 345555432 234567899999999999999999999998643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-06 Score=89.57 Aligned_cols=289 Identities=15% Similarity=0.116 Sum_probs=199.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh----hc
Q 037477 274 RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS----SI 349 (639)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~----~~ 349 (639)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+.+. .|+...|-..+..+. ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 4568889999999999875544 3434556677888999999999999999999987 577777776666655 22
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRF-DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDAC 428 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 428 (639)
...+......+++.+...- |.......+.-.+.....+ ..+..++..+...|+++ +++.|-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2234556666666665543 2222222222222222223 34556777778888654 5666767777666666666
Q ss_pred HHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcC
Q 037477 429 NVLDEMEEN----G----------CIPDI--KTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQ 491 (639)
Q Consensus 429 ~~~~~m~~~----~----------~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 491 (639)
+++...... + -.|.. .++.-+.+.|-..|++++|++++++.++.. |+ +..|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 666665432 1 12444 344666788899999999999999999884 44 67788888999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH-----------HHHHhhcC
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF-----------VQYISKFG 560 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-----------~~ll~~~g 560 (639)
|++.+|.+.++....-. .-|...-+..+..+.++|+.++|.+++....+.+..|..... ...+.+.|
T Consensus 242 G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987652 235566677788899999999999999999887654432211 11124668
Q ss_pred CHHHHHHHHHHhhc
Q 037477 561 TVEDASEFLKALSV 574 (639)
Q Consensus 561 ~~~~a~~~~~~~~~ 574 (639)
++..|.+.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888777666544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-05 Score=76.02 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH--------HHHHhCCCCCC
Q 037477 444 KTWTILIQGHCAA--NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV--------EMIEKVRLRPW 513 (639)
Q Consensus 444 ~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~p~ 513 (639)
..+.+++..+.+. .....+.+++...-+....-...+.-.++......|+++.|.+++. .+.+. +-.|.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChh
Confidence 3444555444332 2356666666666554322224455566777889999999999998 55443 44555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChHhHHHHH-------hhcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQ--NYPPFPEPFVQYI-------SKFGTVEDASEFLKALSVKEYPSSAAYL 584 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 584 (639)
+-..++..+.+.++-+-|.+++++.... .-.+....+..++ .+.|+-++|...++++.+..+++..+..
T Consensus 419 --~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 419 --TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred --HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 5567777788888877788888776641 1122223333332 3569999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC
Q 037477 585 QVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
.++.+|++. +.+.|..+-++.+
T Consensus 497 ~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 497 QLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHhc-CHHHHHHHhhcCC
Confidence 999999975 5688988888863
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-07 Score=86.21 Aligned_cols=234 Identities=14% Similarity=0.045 Sum_probs=168.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
|-.=-+-+..+|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-..|.+..+.+.|+.+|.+-.+. .|-.+||.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l---- 293 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL---- 293 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh----
Confidence 3333466778888888888888888887776 567778888888888888888888888877653 34333332
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
..+.+.+-..++.++|.++++...+.. +.++.....+..+|.-.+++
T Consensus 294 --------------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 294 --------------------------------LGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred --------------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh
Confidence 224445555677888888888887664 44555666666777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD--ADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
+-|+..++++.+.|+. +...|+.+.-+|.-.+++|-++..|.+....--.|+ ..+|-.|-......|++..|.+.|+
T Consensus 341 E~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 8888888888888876 777888888888888888888888888776443333 3456666666677788888888887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 503 EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 503 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
-.... -.-+...++.|.-.-.+.|++++|..+++....
T Consensus 420 laL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 420 LALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 76653 122456777776666778888888888877665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.8e-05 Score=74.46 Aligned_cols=418 Identities=11% Similarity=0.033 Sum_probs=233.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 037477 80 DELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH 159 (639)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g 159 (639)
+.++..|.+.+.+...-.+......+-|+-++|........+ +-..+.++|..+--.+-...++++|+..|+.....+
T Consensus 28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 345666776666666655555544445888888888877665 233577889988888888889999999999887765
Q ss_pred CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHH
Q 037477 160 CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVL 239 (639)
Q Consensus 160 ~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (639)
+-|...+.-+--.=++.++++.... .....++.... ....|- -..+-
T Consensus 106 -~dN~qilrDlslLQ~QmRd~~~~~~---tr~~LLql~~~----------------------------~ra~w~-~~Avs 152 (700)
T KOG1156|consen 106 -KDNLQILRDLSLLQIQMRDYEGYLE---TRNQLLQLRPS----------------------------QRASWI-GFAVA 152 (700)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHhhhh----------------------------hHHHHH-HHHHH
Confidence 1233344332222222322222211 11111111000 000000 00111
Q ss_pred HHhccChHHHHHHHHHHhccCCCCCCHHHHHHHH------HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 240 KELRIYPVKALGFFRWVGEHSGYKHNTITYNGIL------RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 240 ~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
..+.+....|..+.+...+...-.|+...|.... ....+.|.+++|.+.+..-... +.-....-.+-...+.+
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHH
Confidence 1224566677777777654443455655554433 3355678888887777665443 11122233445566788
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh-cCCCchhHHH-HHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 037477 314 FRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISS-INNPDLGLVF-RVANKYESLGNSLSKSVYDGIHRALTKLGRFDE 391 (639)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 391 (639)
.+++++|..++..+... .||...|...+..+.- .. +...+. .++............. -..=++..-...-.+.
T Consensus 232 l~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~--d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIK--DMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEI 306 (700)
T ss_pred HhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHH
Confidence 89999999999988875 5777777666554442 11 122222 3333332221110000 0000111111222344
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME----ENG----------CIPDIKTW--TILIQGHCA 455 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~t~--~~li~~~~~ 455 (639)
.-+++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..| -.|....| --++..|-+
T Consensus 307 vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 456677777777654 33444443332222111111111111 111 13555444 457788889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADA-DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
.|+++.|...++..++. .|+. ..|..=...+.+.|++++|..++++..+- -.||...-..-..-..++++.++|.
T Consensus 384 ~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred cccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHH
Confidence 99999999999998876 4543 34445557889999999999999998764 2455444445566677899999999
Q ss_pred HHHHHHHhCCC
Q 037477 535 NLLRLMKKQNY 545 (639)
Q Consensus 535 ~~~~~m~~~~~ 545 (639)
++.....+.|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999988775
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-06 Score=75.37 Aligned_cols=189 Identities=16% Similarity=0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
..|.-+|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|++.++.. +-+..+.|..-.-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 33444555555555555555555554322 33455555555555555555555555555543 22334444444445555
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChHhHHHHHhhcCCHHHHHHHH
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN--YPPFPEPFVQYISKFGTVEDASEFL 569 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~g~~~~a~~~~ 569 (639)
|++++|...|++........--..+|..+.-+..+.|+.+.|.+.|++..+.. ..|.........-+.|++-.|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 55555555555555431111112355555555555555555655555555422 1222222333334455555555555
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 570 KALSVKEYPSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 570 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
+......+++.+.....|..--+.|+.+.|-+.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 555555445555555555555555555554433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.0001 Score=70.15 Aligned_cols=290 Identities=10% Similarity=0.022 Sum_probs=134.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 037477 245 YPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 245 ~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l 323 (639)
+...|...|-.+.....++-|+.....+...+...|+.++|...|+..... .|+ +.........+.+.|+.+....+
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 333444444444334445556666666666666666666666666665543 121 11111122223445555555444
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG 403 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (639)
...+....- .+..-|-.-.......+++..|+.+-++-.+..
T Consensus 289 ~~~Lf~~~~--------------------------------------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 289 MDYLFAKVK--------------------------------------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHhhhh--------------------------------------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 444432100 000011111122233445555555555544332
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 404 FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
+.+...|-.-...+...|+.++|.--|+..+.... -+...|..|+..|...|.+.+|.-+-+...+. +..+..+...
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 22223333333445556666666666666554321 24556666666666666666666555444332 1222223222
Q ss_pred HH-HHHH-cCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH---hHHHHHh
Q 037477 484 LI-NGFL-SQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE---PFVQYIS 557 (639)
Q Consensus 484 li-~~~~-~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~ 557 (639)
+- ..|. .-..-++|.++++.-.. +.|+ ....+.+.+.|...|..++++.++++... ..||.. .+..++.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMR 482 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHH
Confidence 21 1111 11123555565554432 3444 23344455556666666666666665554 234332 3344455
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 558 KFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 558 ~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
..+.+.+|.+.|.......|.+..+
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccchHH
Confidence 5566666666666666555544443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00023 Score=73.34 Aligned_cols=447 Identities=12% Similarity=0.024 Sum_probs=259.6
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchH
Q 037477 141 NKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKA---KKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDD 217 (639)
Q Consensus 141 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (639)
+.++.++++.-+..-...+...+..++..+..++... +..+++.-+..+-+.+...+...++.-.++-+..+
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k----- 313 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRK----- 313 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH-----
Confidence 4566677777777777777777888888777766543 33444322222222222222222222222211110
Q ss_pred HHHHHHhhccCcCCHHHHHH---HHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 218 KIGKKLEDMKIELSDNFVLT---VLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKK 294 (639)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (639)
+....... ...+.+ ....+.|+.+.+-+.|++.. .+.--....|+.+-..|..+|.-..|..+++.-..
T Consensus 314 -----~r~~~~qn-d~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 314 -----LRLKKFQN-DAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -----HHHhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 01111110 111111 11233577778888888774 34444667888888888888888888888877655
Q ss_pred CCCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHhhcC--CCCC--CHHHHHHHHHHHhhcC---CCc------hhHHHH
Q 037477 295 EGYEM-DIDTYIKISRQFQ-KFRMMEDAVKLFEFMMDG--PYKP--SVQDCSLLLRSISSIN---NPD------LGLVFR 359 (639)
Q Consensus 295 ~g~~p-~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~--g~~p--~~~~~~~ll~~~~~~~---~~~------~~~~~~ 359 (639)
..-.| |...+-..-..|. +.+..++++++-.+.... +..- ....|..+=-+|.... +.+ ..+..+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 43223 3333333333343 357788888888887762 2111 1122222222222211 111 112333
Q ss_pred HHHHHHh-cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 037477 360 VANKYES-LGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN- 437 (639)
Q Consensus 360 ~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 437 (639)
.+++..+ .+..|+...|- .--|+..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+.....
T Consensus 466 ale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 4444433 34445444443 3357788999999999999988866778889999999999999999999999886543
Q ss_pred CCCC------------------CHHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHH-------
Q 037477 438 GCIP------------------DIKTWTILIQGHCA---------AN--------------EVDRALLCFAKM------- 469 (639)
Q Consensus 438 ~~~p------------------~~~t~~~li~~~~~---------~g--------------~~~~a~~~~~~m------- 469 (639)
|..- -..|...++...-. .| +..++.....++
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 2200 01122222221110 00 001111111110
Q ss_pred -HHcC---------CC--CC------HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 470 -MEKN---------YD--AD------ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 470 -~~~g---------~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
...| +. |+ ...|......+.+.+..++|...+.+....+ .-....|...-..+...|.++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhH
Confidence 0011 00 11 1233445567778888888887777776542 223445555556677889999
Q ss_pred HHHHHHHHHHhCCCCCC----hHhHHHHHhhcCCHHHHHH--HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 532 EAMNLLRLMKKQNYPPF----PEPFVQYISKFGTVEDASE--FLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~----~~~~~~ll~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+|.+.|..... +.|+ ...+..++.+.|+-..|.. ++..+.+.+|.+.+.|..+...+-+.|+.++|.+.|.-
T Consensus 702 EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 702 EAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999998876 4444 4455666677787777777 99999999999999999999999999999999999987
Q ss_pred C
Q 037477 606 C 606 (639)
Q Consensus 606 m 606 (639)
.
T Consensus 780 a 780 (799)
T KOG4162|consen 780 A 780 (799)
T ss_pred H
Confidence 3
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00024 Score=71.54 Aligned_cols=505 Identities=11% Similarity=0.132 Sum_probs=282.3
Q ss_pred HHHHHHhhhCCCC---CHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 037477 81 ELENKLEELSPKL---THESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKE 157 (639)
Q Consensus 81 ~~~~~l~~~~~~~---~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 157 (639)
.++..|..++..- -.+.++.-+.. .+-|+-+.++++...+ .++..-+--|..+++.++.++|-+.+.....
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~-~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVES-HGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHh-CCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcC
Confidence 3555565554322 22233333333 5677888888888877 5666677888888888888888777776664
Q ss_pred cC------CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhcc--chhHHHHHHHHHhcCCchHHHHHHHhhcc-C
Q 037477 158 DH------CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIA--MDNVAKTLVDVVLGSDWDDKIGKKLEDMK-I 228 (639)
Q Consensus 158 ~g------~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 228 (639)
+. -+.+...|.-+-...++..+.-.-..+-.++..++..-. ....+++|.+-|.+.|..+.+..++++.- .
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 32 123334455444444443222111222223333333211 11256677777777777777666665531 1
Q ss_pred cCCHH---HHHHHHHHh---------------------ccChHHHHHHHHHHhccCCC----------CCCHHHHHHHHH
Q 037477 229 ELSDN---FVLTVLKEL---------------------RIYPVKALGFFRWVGEHSGY----------KHNTITYNGILR 274 (639)
Q Consensus 229 ~~~~~---~~~~~l~~~---------------------~~~~~~A~~~f~~~~~~~~~----------~p~~~~~~~li~ 274 (639)
..+.. .+.+.+... ..+.+-.+.-|+.+.....+ +.|+..|..-..
T Consensus 278 v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 278 VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 11111 111111100 01122233333333322111 234445544443
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEM------DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISS 348 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 348 (639)
. ..|+..+-...|.+..+. +.| -...|..+...|-.+|+++.|..+|++..+-..+-- .-|-..++.
T Consensus 358 l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v----~dLa~vw~~ 430 (835)
T KOG2047|consen 358 L--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV----EDLAEVWCA 430 (835)
T ss_pred h--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch----HHHHHHHHH
Confidence 3 346667777777777653 122 234578888889999999999999998876543322 222222221
Q ss_pred c-----CCCchhHHHHHHHHHHhcCCCC-----------------ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 037477 349 I-----NNPDLGLVFRVANKYESLGNSL-----------------SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP 406 (639)
Q Consensus 349 ~-----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 406 (639)
. .+.+.+.+..+.+.....+..+ +..+|...++.--..|-++....+++.+.+..+-.
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 1 1223334444443333222211 22335555555566788888889999988776432
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI-KTWTILIQGHCA---ANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
.....|- ...+-.+.-++++++++++-+..=.-|++ ..|+.-+.-+.+ .-..+.|..+|++.++ |++|...-+-
T Consensus 511 Pqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKti 588 (835)
T KOG2047|consen 511 PQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTI 588 (835)
T ss_pred HHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 2222221 12233456678888888765443223454 367776666654 2368999999999998 6666543322
Q ss_pred HHH--HHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH------
Q 037477 483 VLI--NGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF------ 552 (639)
Q Consensus 483 ~li--~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~------ 552 (639)
-|+ ..=-+.|....|+.++++... ++.+. ...||..|.--...=-+.....++++..+. -|+...-
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHH
Confidence 222 112345888899999998765 45544 457777775444433345566777777763 4555433
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 553 VQYISKFGTVEDASEFLKALSVKEYP--SSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 553 ~~ll~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
..+=++.|.++.|..++..-.+..+| +..-|...-..=.+.|+-+...++++
T Consensus 665 AdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33336889999999999888777444 56667777777788898555555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.2e-06 Score=72.36 Aligned_cols=201 Identities=14% Similarity=0.042 Sum_probs=162.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
...+.-.|...|+...|.+-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3446678999999999999999999874 445678999999999999999999999999886543 66788888889999
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKN-YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
.|.+++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+...-. ..+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccchHHH
Confidence 999999999999998842 22235677788888889999999999999988763333 347778888899999999999
Q ss_pred HHHHHHHhCCCCCChHhHHHHH---hhcCCHHHHHHHHHHhhcCCCCCHH
Q 037477 535 NLLRLMKKQNYPPFPEPFVQYI---SKFGTVEDASEFLKALSVKEYPSSA 581 (639)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~~~~ 581 (639)
..++.....+. ++..++.-.+ ...|+.+.+-++=..+....|.+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999887665 7776665544 4679999998887777776555443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00031 Score=70.96 Aligned_cols=361 Identities=14% Similarity=0.113 Sum_probs=218.8
Q ss_pred HHHHHHHhccChHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 235 VLTVLKELRIYPVKALGFFRWVGEHSGYKH-NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 235 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
+..++.+....+++|++.|+.... +.| |...|--+--.=++.|+++.....-..+.+.. +-....|..+..++.-
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence 344444446788899999988752 234 56677666666677788888888877777663 3355678888888888
Q ss_pred cCCHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHhc-CCCCChh-hHHHHHHHHHccCCh
Q 037477 314 FRMMEDAVKLFEFMMDGP-YKPSVQDCSLLLRSISSIN-NPDLGLVFRVANKYESL-GNSLSKS-VYDGIHRALTKLGRF 389 (639)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~li~~~~~~g~~ 389 (639)
.|+...|..+.++..+.. -.|+...+.-....+-+.. ....+......+..... +...|.. .-..-...+.+.+++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 999999999999887754 3566666544433222111 00111112222222221 1111222 223345677888999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 390 DEAEKMMKAMKNAGFEPDNITYSQVIFGLC-KAGRFEDAC-NVLDEMEENGCI---PDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 390 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~~~~---p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
++|..++..+... .||..-|......+. +-.+.-++. .+|....+.-.. |-....+ ++. ...-.+..-.
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~eel~~~vdk 309 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---GEELKEIVDK 309 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---cchhHHHHHH
Confidence 9999999998877 577766665544333 333333333 666665543211 1111111 111 1222344455
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CC----------CCCCH--HHHHHHHHHHHhcCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VR----------LRPWQ--ATFKTLIEKLLGARR 529 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~----------~~p~~--~~~~~li~~~~~~g~ 529 (639)
++..+++.|+++ ++..+...|-.-.+.+-..++.-.+... .| -.|.. .++-.++..|-+.|+
T Consensus 310 yL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 310 YLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 667777778654 3334444443322222222222222111 01 13443 355567888899999
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHH----HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 530 LEEAMNLLRLMKKQNYPPFPEPFV----QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
++.|...++...+ ..|+..-+- .++.+.|++++|..++++..+.+.+|...-..-+.-..++.+.++|.++..+
T Consensus 387 ~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 387 YEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9999999999886 456655433 5557889999999999999999888887777888888999999999999888
Q ss_pred CCccc
Q 037477 606 CPHHI 610 (639)
Q Consensus 606 m~~~~ 610 (639)
....+
T Consensus 465 FTr~~ 469 (700)
T KOG1156|consen 465 FTREG 469 (700)
T ss_pred hhhcc
Confidence 64444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-08 Score=61.85 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEM 292 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (639)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-05 Score=78.17 Aligned_cols=216 Identities=11% Similarity=0.008 Sum_probs=116.7
Q ss_pred ChHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 245 YPVKALGFFRWVGEHSGYKHN--TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 245 ~~~~A~~~f~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
..+.++.-+..+.......|+ ...|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555556555433333332 3456666667777788888887777777664 3456777777777777888888877
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
.|+...+. .|+ +..++..+..++...|++++|.+.|+...+.
T Consensus 120 ~~~~Al~l--~P~------------------------------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLEL--DPT------------------------------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHh--CCC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77776542 222 1223444555566677777777777776655
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C---CC
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN---Y---DA 476 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~---~~ 476 (639)
.|+..........+...++.++|...|.+..... .|+...+ . ......|+.+.+ +.+..+.+.. . +.
T Consensus 162 --~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 162 --DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAER 234 (296)
T ss_pred --CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH
Confidence 2332211111222334566777777775544321 2222111 1 222234444332 2333333210 0 01
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 477 DADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
....|..+...+.+.|++++|...|++..+
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123555666666666666666666666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-06 Score=79.70 Aligned_cols=335 Identities=9% Similarity=0.003 Sum_probs=194.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHN-TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a 320 (639)
.+.+++|+++|.+..+ +.|| .+.|.....+|...|+|+++.+.-....+. .|+ +..+..-..++-..|++++|
T Consensus 128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 4678889999998863 3567 788888888999999999888877777665 444 33455556677777888777
Q ss_pred HHHHHHhhc-CCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--hcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 037477 321 VKLFEFMMD-GPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYE--SLGNSLSKSVYDGIHRALTKLGRFDEAEKMMK 397 (639)
Q Consensus 321 ~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (639)
+.=..-..- .|+.-. .+--.+=+.+-+ ......-+.+. +.++.|+.....+....+...
T Consensus 203 l~D~tv~ci~~~F~n~-s~~~~~eR~Lkk------~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~----------- 264 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNA-SIEPMAERVLKK------QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD----------- 264 (606)
T ss_pred HHhhhHHHHhhhcccc-hhHHHHHHHHHH------HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-----------
Confidence 542221111 111110 000000000000 00111112222 122334433333333222110
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHH---CCCC---CCH------HHHHHHHHHHHHcCCHH
Q 037477 398 AMKNAGFEPDNITYSQVIFGLCK-----AGRFEDACNVLDEMEE---NGCI---PDI------KTWTILIQGHCAANEVD 460 (639)
Q Consensus 398 ~m~~~g~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~---~~~~---p~~------~t~~~li~~~~~~g~~~ 460 (639)
.......+.......+..++.. ...+.+|...+.+-.. .... .|. .+...-..-+.-.|+.-
T Consensus 265 -~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 265 -PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred -ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0000001111112222222111 1123333333322111 0000 111 11122222234568888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
.|..-|+..++....++. .|--+-.+|....+.++.+..|+...+...-.||+ |..--..+.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987644433 36666677999999999999999988776666674 444444455567899999999998
Q ss_pred HhCCCCCC-hHhHHHHHh---hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 541 KKQNYPPF-PEPFVQYIS---KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 541 ~~~~~~p~-~~~~~~ll~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. +.|. ...+..+.+ +.+.++++...|+...++.|..++.|+....++..+++++.|.+.|++.
T Consensus 421 i~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 421 IS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred hh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 87 4454 334555543 6689999999999999999999999999999999999999999999984
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-05 Score=76.98 Aligned_cols=302 Identities=13% Similarity=-0.025 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH-HHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEG-YEMDIDT-YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ-DCSLL 342 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-~~~~l 342 (639)
...|..+...+...|+.+.+.+.+....+.. ..++... .......+...|++++|.+++++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 4567777777778888888777777665442 1223222 222344567789999999999988764 23322 1111
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKA 421 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 421 (639)
...+. ......+..+.+.+.+... ....|+ ......+...+...
T Consensus 83 ~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 83 HLGAF---------------------------------GLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred hHHHH---------------------------------HhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 00000 0011123334444444331 111222 22333444556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHcCCChhHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY-DADA--DLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~ 498 (639)
|++++|...+++..+.... +...+..+...|...|++++|...+++..+... .++. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777776665422 345556666666677777777777666665321 1222 23445556666777777777
Q ss_pred HHHHHHHHhCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCCCCC--h--HhHHHHHhhcCCHHHHHHH
Q 037477 499 KLLVEMIEKVRLRPWQATF-K--TLIEKLLGARRLEEAMNL---LRLMKKQNYPPF--P--EPFVQYISKFGTVEDASEF 568 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~~~~~p~--~--~~~~~ll~~~g~~~~a~~~ 568 (639)
.++++........+..... + .++.-+...|....+.++ ...-......+. . .+....+...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 7776654321111111111 1 222222233322222221 111111000000 0 1122223456777777777
Q ss_pred HHHhhcCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 569 LKALSVKEYP---------SSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 569 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
++.+...... ..........++.+.|++++|.+.+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7766543111 1223334455567889999998888763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=60.24 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 037477 295 EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM 328 (639)
Q Consensus 295 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (639)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-05 Score=72.45 Aligned_cols=314 Identities=12% Similarity=0.065 Sum_probs=149.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHH
Q 037477 269 YNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL--RSI 346 (639)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll--~~~ 346 (639)
+++++..+.+..++++|++++..-.++. +.+......+..+|....++.+|-..|+++... -|...-|...- +.|
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666667777777777777766653 225666777777777777777777777776542 23222221100 000
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH--HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 347 SSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH--RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
-. + -...+.++...+... +....-..-+ ......+|+..+..+.++....| +..+.+...-...+.|++
T Consensus 90 ~A-~--i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KA-C--IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred Hh-c--ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 00 0 011111111111110 0000000000 01123344444444444443211 122222222223345555
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHcCCChhHHHH
Q 037477 425 EDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL----DVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 425 ~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~ 499 (639)
+.|.+-|+...+- |.. ....||..+.. .+.|+.+.|++...++++.|++-....- .-.+++-. .|+ -..
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~ 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLV 234 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHH
Confidence 5555555554432 333 23344433322 2344555555555555555543211100 00000000 000 000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChHhHHHHH--hhcCCHHHHHHHHHHhhcCC
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK-QNYPPFPEPFVQYI--SKFGTVEDASEFLKALSVKE 576 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll--~~~g~~~~a~~~~~~~~~~~ 576 (639)
+-... -+..+|.-...+.+.|+++.|.+.+-.|.- .....|+.|+..+- ...++..+..+-+.-+....
T Consensus 235 lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 LHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC
Confidence 00000 011222222334567888888888777753 23345666775543 34566777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 577 YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
|...+++..++-.|+++.-++-|.+++-+-++
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 88889999999999999999988888877544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00051 Score=71.14 Aligned_cols=391 Identities=15% Similarity=0.111 Sum_probs=190.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhc-CC--------CCCHHHHHHHHHHHHh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKED-HC--------YIEEETYLSILGVLKK 176 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~--------~~~~~t~~~ll~~~~~ 176 (639)
-|+.+.|.+-.+.++ +-..|..|.+.|.+.++++-|.-.+-.|... |. .|+ .+-..+--....
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 577787777666664 5678999999999999999988888777643 11 121 222222222344
Q ss_pred cCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhcc-Cc--CCHHHHHHHHHHhccChHHHHHHH
Q 037477 177 AKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMK-IE--LSDNFVLTVLKELRIYPVKALGFF 253 (639)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~A~~~f 253 (639)
.|+.+++. .+|.+..+. .-+=.+|...|...++.++-+.-. +. .|+.....-| +.+++.+.|+++|
T Consensus 813 LgMlEeA~---~lYr~ckR~-------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L-ear~Di~~Aleyy 881 (1416)
T KOG3617|consen 813 LGMLEEAL---ILYRQCKRY-------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL-EARRDIEAALEYY 881 (1416)
T ss_pred HhhHHHHH---HHHHHHHHH-------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH-HhhccHHHHHHHH
Confidence 55555543 334443332 122334455555555555544432 11 2222222222 2245566666666
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037477 254 RWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK 333 (639)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (639)
+... ...++. -+.+. .++.......+.+. |...|.-....+-..|+.+.|+.+|....+
T Consensus 882 EK~~--------~hafev-~rmL~--e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 882 EKAG--------VHAFEV-FRMLK--EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HhcC--------ChHHHH-HHHHH--hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 5431 111110 01110 12222222233322 334444455555566777777777766543
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 037477 334 PSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQ 413 (639)
Q Consensus 334 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 413 (639)
|-.+++..|-.|+.++|-++-++- -|....-.
T Consensus 941 ------------------------------------------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYh 972 (1416)
T KOG3617|consen 941 ------------------------------------------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYH 972 (1416)
T ss_pred ------------------------------------------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHH
Confidence 334555555566666666555432 24444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--C------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENG--C------IPDIKTWTILIQGHCAAN--EVDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~--~------~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
|.+.|-..|++.+|...|.+.+.-. + ..+...+| .+...| +.-.|.++|++. |.. +..
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n----lal~s~~~d~v~aArYyEe~---g~~-----~~~ 1040 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN----LALMSGGSDLVSAARYYEEL---GGY-----AHK 1040 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----HHhhcCchhHHHHHHHHHHc---chh-----hhH
Confidence 5566666666666666665543210 0 00111111 111111 222233333322 211 112
Q ss_pred HHHHHHcCCChhHHHHH---------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 037477 484 LINGFLSQKRVNGAYKL---------LVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQ 554 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~---------~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 554 (639)
.+..|-++|.+.+|+++ ++-+.+...-..|....+.-.+-++...++++|..++....+ |..
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~ 1111 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSG 1111 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHH
Confidence 23346666666666544 222222222334566667777777778888888888776653 222
Q ss_pred H--HhhcCCHHHHHHHHHHhhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 555 Y--ISKFGTVEDASEFLKALSVK--EYPS----SAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 555 l--l~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
. +|+..++.--.++-+.|.-. ..|+ ......+...+.++|.+..|.+-|.+
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2 23334444444444444321 1122 23455666777778887777766655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-05 Score=79.29 Aligned_cols=67 Identities=10% Similarity=-0.050 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHhhcCCCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 108 DPEKASAFFNWVCDKKQFR-PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 108 ~~~~A~~~f~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.+.+.+++-+......|-. -+-.--.+++..+.+ ++++|..+|-+-- .-...|..|....+|+++..
T Consensus 511 ~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~ 578 (1636)
T KOG3616|consen 511 FLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIA 578 (1636)
T ss_pred HHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHH
Confidence 4455566666655443322 223333455555544 4556655553311 11234455555555555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00023 Score=71.67 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=175.7
Q ss_pred HHHHhccChHHHHHHHHHHhccCCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 037477 238 VLKELRIYPVKALGFFRWVGEHSGYKHNTIT-YNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR- 315 (639)
Q Consensus 238 ~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g- 315 (639)
.+....++++.+...+....+.....++... .......+...|++++|.+++++..+.. +.|...+.. ...+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~ 91 (355)
T cd05804 14 LLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGD 91 (355)
T ss_pred HHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcc
Confidence 3334456677767777666433332333322 2223345677899999999999988763 334444443 22333333
Q ss_pred ---CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhH
Q 037477 316 ---MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS-KSVYDGIHRALTKLGRFDE 391 (639)
Q Consensus 316 ---~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 391 (639)
....+.+.+... . +..|+ ......+...+...|++++
T Consensus 92 ~~~~~~~~~~~l~~~--~-------------------------------------~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 92 FSGMRDHVARVLPLW--A-------------------------------------PENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred cccCchhHHHHHhcc--C-------------------------------------cCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 333333333320 0 11111 2233345567788999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC-IPDI--KTWTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~t~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
|.+.+++..+.. +.+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999875 44567788888999999999999999999876532 2232 3456788889999999999999999
Q ss_pred HHHcCC-CCCHHHH-H--HHHHHHHcCCChhHHHHH--HHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 469 MMEKNY-DADADLL-D--VLINGFLSQKRVNGAYKL--LVEMIEKVRL-RPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 469 m~~~g~-~~~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
...... .+..... + .++.-+...|..+.+.+. .......... ............++...|+.++|..+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 865432 1222211 1 333344445544433333 2211111000 1111222356677888999999999999987
Q ss_pred hCCCCC--C-h----H---hHHHH-HhhcCCHHHHHHHHHHhhcC
Q 037477 542 KQNYPP--F-P----E---PFVQY-ISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 542 ~~~~~p--~-~----~---~~~~l-l~~~g~~~~a~~~~~~~~~~ 575 (639)
...... . . . ....+ ....|+.++|.+.+......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 632221 0 0 0 11111 14779999999988877643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00016 Score=68.99 Aligned_cols=298 Identities=13% Similarity=0.098 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHc--CCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHH
Q 037477 263 KHNTITYNGILRVLAR--HESVRDFWNVVEEMKKE-GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDC 339 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (639)
.|+..+...-|.+++. .++...|...+-.+... -++-|+.....+...+...|+.++|+..|+..+.. .|+..+
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~- 267 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE- 267 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh-
Confidence 3443344444444443 34444444444444333 34567888999999999999999999999987643 232221
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 037477 340 SLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLC 419 (639)
Q Consensus 340 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 419 (639)
.+ ..|.. .+.+.|+.+....+...+.... +-....|-.-....-
T Consensus 268 -~M-------------------------------D~Ya~---LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 268 -AM-------------------------------DLYAV---LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred -hH-------------------------------HHHHH---HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 10 11222 2356677777777776665432 122233433344445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
...+++.|+.+-++-++.... +...|-.-...+...|++++|.-.|+...... +-+...|..|+.+|...|++.+|..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 678899999998888875433 44555555567788899999999998887653 4578999999999999999999998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhh
Q 037477 500 LLVEMIEKVRLRPWQATFKTLI-EKLL-GARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALS 573 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~ 573 (639)
+-++..+..+- +..+...+- ..|. ....-++|..++++-.+ +.|+.. ....++...|..++++.++++..
T Consensus 390 ~An~~~~~~~~--sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 390 LANWTIRLFQN--SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHhhc--chhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 87776654332 333333321 1121 12234789999888776 456543 34455567899999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 574 VKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 574 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. .++....+.|.+.+.....+.+|.+.|..-
T Consensus 466 ~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 466 II-FPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hh-ccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 65 568888999999999999999999998874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0002 Score=66.78 Aligned_cols=441 Identities=9% Similarity=0.007 Sum_probs=234.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCC
Q 037477 136 LRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKE-IAMDNVAKTLVDVVLGSD 214 (639)
Q Consensus 136 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 214 (639)
+.-+..++++..|+.+++--...+-.-...+-.-+-..+.+.|+++++.. .|..+... .....+.-.+.-.+--.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~---~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALN---VYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHH---HHHHHhccCCCCcccchhHHHHHHHHH
Confidence 44455567888888888765544322222222223445567787777654 44444443 333333322322222234
Q ss_pred chHHHHHHHhhccCcC-CHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 215 WDDKIGKKLEDMKIEL-SDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMK 293 (639)
Q Consensus 215 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (639)
...++.....+.+..+ ....+..+-.++ ++.++-..+-+.+. ....---+|....--.-.+.+|.+++....
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~Lq------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHh------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777765332 223333333332 33333333333332 112222233333333346889999999988
Q ss_pred HCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC
Q 037477 294 KEGYEMDIDTYIKIS-RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS 372 (639)
Q Consensus 294 ~~g~~p~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (639)
.. .|+-...|.-+ -+|.+..-++-+.+++.--.+. -||.. ...=+.+|...+..+...+.+-...+...+...
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 76 45555555544 4556777777777777766553 34432 222233333322222222222222222222111
Q ss_pred hhhHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 373 KSVYDGIHRALTKL-----GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 373 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
| ..+.-+++. ..-+.|++++--+.+. -| ..--.|+--|.+.+++.+|..+.+++.-. .|-....-
T Consensus 253 ---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1 122222332 3457788877666543 22 23344566688999999999987776531 12222222
Q ss_pred HHH-----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 448 ILI-----QGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 448 ~li-----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
.+. +-.....+..-|.+.|+..-+.+..-|... -.++..++.-..++++.+.+++.+..- -..-|...|| +.
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N-~A 400 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLN-LA 400 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhH-HH
Confidence 221 111222345556666665555554433322 234445555566789999999888653 3444544444 57
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh----hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS----KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
.+++..|.+.+|+++|-.+....+ .+..+|..+++ +++..+.|..++-++... .........+.+-+.+.+.+-
T Consensus 401 QAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~-~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP-SERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999977754332 34567777775 458888887776544321 112334455667788888887
Q ss_pred HHHHHHhhC
Q 037477 598 EAKDLLYKC 606 (639)
Q Consensus 598 ~A~~~~~~m 606 (639)
-|.+.|+..
T Consensus 479 yaaKAFd~l 487 (557)
T KOG3785|consen 479 YAAKAFDEL 487 (557)
T ss_pred HHHHhhhHH
Confidence 777777665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00015 Score=71.99 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=178.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
.-+......-..-+...+++.+..++++...+. .++....+..-|.++...++ ....+.+-..+.+. .+....+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~--~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK--SNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc--cchHHHHHHHHHHh-CCCCCcchh
Confidence 345555555566666667777777777666653 23334444444445554443 22333333333322 223456677
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN--GCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~ 455 (639)
++.--|...|+..+|.+.|.+..... +.=...|-.....|+-.|..|.|+..+....+. |.. -+..| +.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHH
Confidence 77777777899999999998876543 122457888888888899999998888776653 221 11222 3345677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK----VRLR-PWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-p~~~~~~~li~~~~~~g~~ 530 (639)
.++.+.|.+.|.+..... +-|+...+-+--..-+.+.+.+|..+|+..... ..-+ -+..+++.|-.+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888899999998887653 446666776666666778888998888876521 1111 2566788888888999999
Q ss_pred HHHHHHHHHHHhCC-CCCChHhHHHH-HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 037477 531 EEAMNLLRLMKKQN-YPPFPEPFVQY-ISKFGTVEDASEFLKALSVKEYPSSAAYLQVF 587 (639)
Q Consensus 531 ~~A~~~~~~m~~~~-~~p~~~~~~~l-l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 587 (639)
++|+..+++..... ..++..+-..+ ....|+++.|++.|.+.....|.+..+-..|-
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999998887632 12222222222 35779999999999888877665544444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0022 Score=68.19 Aligned_cols=312 Identities=16% Similarity=0.163 Sum_probs=160.9
Q ss_pred cChHHHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 244 IYPVKALGFFRWVGEH-SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
+.+.+-+++++.+.-+ ..+.-+...-|.||-...+. +...+.+..+++..-. .|+ +...+..++-+++|..
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFA 1069 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHH
Confidence 3445555666555322 22233334445555444443 3344444455444332 111 2333455666777777
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
+|+..- .+....+.|+.-.. .++.+.+..+.. ..+.+|..+..+-.+.|.+.+|.+-|-+.
T Consensus 1070 ifkkf~-----~n~~A~~VLie~i~-----~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1070 IFKKFD-----MNVSAIQVLIENIG-----SLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHhc-----ccHHHHHHHHHHhh-----hHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 777652 33444444443222 122222222211 23456677777777777777776665432
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
-|+..|..+++...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++..+..+++ ..||.....
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 255567777777777777777777666666555444433 45666777777665544443 235555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM---------------------- 540 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---------------------- 540 (639)
.+-+-|...|.++.|.-+|.... -|..+...+...|+++.|.+.-.+.
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 55555556666665555554321 2333333444444444433322221
Q ss_pred --HhCCCCCCh---HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHh
Q 037477 541 --KKQNYPPFP---EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG--RHYEAKDLLY 604 (639)
Q Consensus 541 --~~~~~~p~~---~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~ 604 (639)
.-..+.... .-+...+...|-+++-+.+++............|+-|.-.|.+-. +.-|-+++|-
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFW 1339 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 111111111 223444456688888888887777666667777877777776543 3334444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=84.11 Aligned_cols=148 Identities=21% Similarity=0.250 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHcCC
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING----FLSQK 492 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g 492 (639)
.+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...|..+ +....
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence 344456666666555431 245555556666666666666666666665432 2322 2222222 22223
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH---hhcCCH-HHHHHH
Q 037477 493 RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI---SKFGTV-EDASEF 568 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~g~~-~~a~~~ 568 (639)
.+.+|..+|+++.+++ .++..+.+.+..++...|++++|.+++.+..+.. +-+..++..++ ...|+. +.+.++
T Consensus 182 ~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4666666666665432 3455556666666666666666666666554322 11223333333 123443 444455
Q ss_pred HHHhhcCC
Q 037477 569 LKALSVKE 576 (639)
Q Consensus 569 ~~~~~~~~ 576 (639)
+.++....
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 55555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00029 Score=72.84 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred CChHHHHHHHH--HHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHH
Q 037477 127 PSSTVYSLMLR--NLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAK 204 (639)
Q Consensus 127 ~~~~~~~~li~--~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (639)
-|..+--+|++ .|.--|+++.|.+-.+-++ +..+|..+-+.|.+..+.+-+.....-+.+...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg--------- 788 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG--------- 788 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh---------
Confidence 46666677775 4677899999988887766 457799999999998877655433222221110
Q ss_pred HHHHHHhcCCchHHHHHHHhhcc-CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChh
Q 037477 205 TLVDVVLGSDWDDKIGKKLEDMK-IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVR 283 (639)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 283 (639)
.+.+++.. ..-....-..+|.---+..++|+.+|++..+ |..|=..|-..|.++
T Consensus 789 ---------------aRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~ 843 (1416)
T KOG3617|consen 789 ---------------ARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWS 843 (1416)
T ss_pred ---------------HHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHH
Confidence 01111110 0001122222333223566777877777631 334445566677888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 037477 284 DFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 284 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (639)
+|.++-+.=..-. =-.||..-..-+-..++.+.|++.|+..
T Consensus 844 eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 844 EAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8877655422211 2345555556666677788888887765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-05 Score=85.58 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037477 391 EAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN-GCI---PDIKTWTILIQGHCAANEVDRALLCF 466 (639)
Q Consensus 391 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~---p~~~t~~~li~~~~~~g~~~~a~~~~ 466 (639)
.|.++-...... +.+...|-..|......++.++|.+++++.... +++ --...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344443333332 445678999999999999999999999998753 111 12357888888888888889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037477 467 AKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP 546 (639)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (639)
+++.+.. . ....|..|...|.+.+++++|-++++.|.++++. ....|...++.+.+..+-+.|..++++..+.-.+
T Consensus 1521 eRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 9998863 2 2566889999999999999999999999998774 4558999999999999999999999998874222
Q ss_pred CChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 547 PFPE----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 547 p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
-... -|..+--++|+.+.++.+|+......|.....|+..++.=.+.|+.+.+.++|++.-
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1122 334455699999999999999999999999999999999999999999999999853
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-05 Score=74.98 Aligned_cols=226 Identities=18% Similarity=0.153 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
......+.+++...|+.+.++ .++.... .|.......+...+...++-+.++.-+++....+..++..++ .++.+
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~-~~~~A 109 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIV-QLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHH-HHHHH
Confidence 344455666677777665433 3333332 555555544444443334555555555555444333222222 23333
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----c
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----A 421 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 421 (639)
..-....+.+.+.++... ..+.......+.+|.+.++++.|.+.++.|.+. ..|. +...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~------~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHK------GGSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTT------TTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHc------cCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCc
Confidence 333333333333332221 123344445666777777777777777777654 2232 23333333332 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hHHHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV-NGAYKL 500 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~ 500 (639)
+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3567777777776543 34566667777777777777777777777766543 23455555566666666665 556666
Q ss_pred HHHHHHh
Q 037477 501 LVEMIEK 507 (639)
Q Consensus 501 ~~~m~~~ 507 (639)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 6666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00028 Score=80.91 Aligned_cols=331 Identities=15% Similarity=0.074 Sum_probs=185.5
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC--CC----CCCHHHHHHHHHHHhhc
Q 037477 276 LARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDG--PY----KPSVQDCSLLLRSISSI 349 (639)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~----~p~~~~~~~ll~~~~~~ 349 (639)
+...|+++.+...++.+.......+..........+...|+++++..++....+. .. .+....-...+.+....
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4445666666666655422111112222233344445667777777777665432 00 11111111112222222
Q ss_pred CCCchhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHCCC---CCC--HHhHHHHHHHHHh
Q 037477 350 NNPDLGLVFRVANKYESLGNSLS----KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF---EPD--NITYSQVIFGLCK 420 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~ 420 (639)
...+.+.+....+.........+ ....+.+...+...|++++|...+++.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 33355555555555443211111 12345556667788999999998888764311 111 2344556667788
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHH
Q 037477 421 AGRFEDACNVLDEMEE----NGCI--P-DIKTWTILIQGHCAANEVDRALLCFAKMMEK--NYDA--DADLLDVLINGFL 489 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~----~~~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~--~~~~~~~li~~~~ 489 (639)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998887654 2211 1 2233445556677789999999988887653 1112 1233444556777
Q ss_pred cCCChhHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------HhHHHHHhh
Q 037477 490 SQKRVNGAYKLLVEMIEKVRLRPWQATF-----KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP------EPFVQYISK 558 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~ 558 (639)
..|++++|...++..............+ ...+..+...|+.+.|.+++............ .....++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999999888875421111111111 11224445578899999887765542211111 122233457
Q ss_pred cCCHHHHHHHHHHhhcC---C--C-CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 559 FGTVEDASEFLKALSVK---E--Y-PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~---~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|+.++|...+++.... . + ....++..+..+|.+.|+.++|.+.+.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 79999999988887654 1 1 12345667788888999999998888874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0019 Score=64.17 Aligned_cols=171 Identities=11% Similarity=0.003 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHH
Q 037477 424 FEDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA-DADLLDVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 424 ~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 501 (639)
.+....+++++... .+.|+ -+|-..|..-.+..-++.|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55666667666543 23343 467778888888888999999999999988777 77888888887774 6778999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--HhHHHHH---hhcCCHHHHHHHHHHhhcCC
Q 037477 502 VEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP--EPFVQYI---SKFGTVEDASEFLKALSVKE 576 (639)
Q Consensus 502 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll---~~~g~~~~a~~~~~~~~~~~ 576 (639)
+--.+++|-.|- --...++-+...|+-..|..+|++....++.|+- ..|..++ +..|+++.+.++-+++....
T Consensus 425 eLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 425 ELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 987777654443 4466778888889999999999999988666654 4566666 57799999988888777664
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHH
Q 037477 577 YPS----SAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 577 ~~~----~~~~~~l~~~~~~~g~~~~ 598 (639)
+.+ -..-..+++.|.-.+.+..
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred chhhcCCCChHHHHHHHHhhcccccc
Confidence 411 1123345555555554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0031 Score=65.43 Aligned_cols=198 Identities=8% Similarity=-0.036 Sum_probs=116.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH-CYIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
+|.++.+-+.|+.... +.--....|+.+-..+.-.|.-..|+.++++-.... .++|...+-..-+.|.+. .+.++
T Consensus 336 ~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~--l~~~e 411 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER--LKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc--hhhhh
Confidence 5777777788877664 222345677777777777777777887777644332 223444444444444432 23333
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhc-CCchHHHHHHHhhcc------CcCCHHHHHHHHHHhccChHHHHHHHHHHh
Q 037477 185 ALNQFHDGMVKEIAMDNVAKTLVDVVLG-SDWDDKIGKKLEDMK------IELSDNFVLTVLKELRIYPVKALGFFRWVG 257 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~ 257 (639)
.+.++-..++. .+.. .+........+.+.. ....+..- .....+++..+++..
T Consensus 412 egldYA~kai~-------------~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR-------~~~h~kslqale~av 471 (799)
T KOG4162|consen 412 EGLDYAQKAIS-------------LLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER-------DALHKKSLQALEEAV 471 (799)
T ss_pred hHHHHHHHHHH-------------HhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH-------HHHHHHHHHHHHHHH
Confidence 33333333322 1100 000000001111100 00011000 122446788888886
Q ss_pred ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 258 EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 258 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
+..+-.|++..|-++- |+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+....
T Consensus 472 ~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred hcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 6666677776665554 666778999999999999886677899999999999999999999999887654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-05 Score=75.97 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=151.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
|...|.+|+..|+.++|..+..+..++ +||...|..+.+......-+++|.++++..-.. .-..+.....+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~ 497 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccccc
Confidence 666888999999999999998888874 789999998888887777788899888775432 11111122234
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 534 (639)
.++++++.+.|+.-.+.+ ..-..+|-.+-.+..+.++++.|.+.|..... ..|+ ...||.+-.+|.+.|+..+|.
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 788999999998877754 34567787888888899999999999998764 3565 668999999999999999999
Q ss_pred HHHHHHHhCCCCCChH---hHHHHHhhcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 037477 535 NLLRLMKKQNYPPFPE---PFVQYISKFGTVEDASEFLKALSVK--EYPSSAAYLQVFESFF 591 (639)
Q Consensus 535 ~~~~~m~~~~~~p~~~---~~~~ll~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~ 591 (639)
..+++..+.+ .-++. -|..+..+-|.+++|.+++.++... ...+.++...++....
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999998866 33333 3444446889999999999888765 3335565555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00073 Score=69.10 Aligned_cols=287 Identities=14% Similarity=0.124 Sum_probs=155.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
+.|..|.+.|....|.+....=.. +..|......+..++.+..-+++|-.+|+.+.. | .-.+.++.+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHccc
Confidence 456677777777766554322111 123555555555556665556666666665532 1 11111111111
Q ss_pred CCchhHHHHHHHHHHhcCCCCChhhH-HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 351 NPDLGLVFRVANKYESLGNSLSKSVY-DGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
....+.++.+. ..+..++.. ...-.-+...|+++.|..-|-+.. ...-.+.+-.....|.+|+.
T Consensus 689 --af~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ 753 (1636)
T KOG3616|consen 689 --AFGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAIS 753 (1636)
T ss_pred --HHHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHh
Confidence 01111111110 111111111 112223344556666655554332 11233455667788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC
Q 037477 430 VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR 509 (639)
Q Consensus 430 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (639)
+++.++..... ..-|..+.+.|+..|+++.|.++|.+. ..++-.|.+|.+.|++++|.++-.+.. |
T Consensus 754 ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~---~ 819 (1636)
T KOG3616|consen 754 ILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH---G 819 (1636)
T ss_pred HHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc---C
Confidence 88888775432 344677788888889998888888542 235667788889999988888877653 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CCCCCC----------------hHhHHHHHhhcCCHH
Q 037477 510 LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK----------QNYPPF----------------PEPFVQYISKFGTVE 563 (639)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~p~----------------~~~~~~ll~~~g~~~ 563 (639)
.......|-+-..-+-+.|++.+|.+++-.+.+ .|...| ...|..-+...|++.
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChh
Confidence 444566666666666677777777666532211 111111 111222223445555
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 564 DASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 564 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
.|+.-|-+. .-|.+-++.|-..+.|++|.++-+.
T Consensus 900 aae~~flea--------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 900 AAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 555544332 3366778888888888888887765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00032 Score=76.81 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 037477 284 DFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANK 363 (639)
Q Consensus 284 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 363 (639)
.|.++-+.+... +-+...|-..|....+.++.++|.+++++.+.. +.+. +-++-
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R-----------------EeeEK------ 1496 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFR-----------------EEEEK------ 1496 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc-----------------hhHHH------
Confidence 444443333332 456677999999999999999999999988753 1110 00111
Q ss_pred HHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037477 364 YESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI 443 (639)
Q Consensus 364 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 443 (639)
..+|.++++.-..-|.-+...++|++..+.- -.-..|..|...|.+.+.+++|.++|+.|.+.= .-..
T Consensus 1497 ---------LNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~ 1564 (1710)
T KOG1070|consen 1497 ---------LNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTR 1564 (1710)
T ss_pred ---------HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchh
Confidence 1245566666666678888899999998752 224568889999999999999999999998752 2467
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
..|...+..+.++++-+.|..++.+.++.=.+ -........+..-.+.|+.+.+..+|+.....+.-+-| .|+..|+
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD--lW~VYid 1642 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD--LWSVYID 1642 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh--HHHHHHH
Confidence 88999999999999999999999998875221 13344555566677899999999999999887544444 8999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPFP 549 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~ 549 (639)
.-.++|+.+.+..+|++....++.|-.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 999999999999999999998887753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0034 Score=62.37 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 459 VDRALLCFAKMMEK-NYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 459 ~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
.+....++++++.. ...| ..+|..+++.-.+..-++.|..+|.+..+. +..+ ++..+++++.-||. ++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 44455555555553 2333 346778888888888899999999999887 5555 78889999997765 788999999
Q ss_pred HHHHHh-CCCCCC-hHhHHHHHhhcCCHHHHHHHHHHhhcC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 537 LRLMKK-QNYPPF-PEPFVQYISKFGTVEDASEFLKALSVK-EY--PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 537 ~~~m~~-~~~~p~-~~~~~~ll~~~g~~~~a~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
|+.-.+ .|-.|. ...|..++...++-+.+..+|++.... .+ ...+.|..++.-=..-|+.+.+.++-+++
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 997554 333332 235667778999999999999999877 33 35588999999999999999999988875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00032 Score=63.94 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIK-ISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
+......|..+|-+..++..|...++++-.. .|...-|.. -...+.+.+.+.+|+++...|.+. |+...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 6666777777777777888888888877655 455444432 234556777788888888777653 3333333334
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
.+..+....|......+.++.-. .-+..+.+.......+.|+++.|.+-|+...+-+---....||..+..| +.|+
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~q 193 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQ 193 (459)
T ss_pred HHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhh
Confidence 44445555555555555544321 2233334334444557788888888888776654333455677655444 5677
Q ss_pred HHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHHH-------HHHHcCCHHHHHHHHHHHHHc-CC
Q 037477 424 FEDACNVLDEMEENGCIP-------------DIK--------TWTILIQ-------GHCAANEVDRALLCFAKMMEK-NY 474 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p-------------~~~--------t~~~li~-------~~~~~g~~~~a~~~~~~m~~~-g~ 474 (639)
++.|++...++.++|++- |+. .-+.++. .+.+.|+.+.|.+.+-.|.-. .-
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 888888888887776431 211 1122332 344667778787777776542 22
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 475 DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRL 539 (639)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (639)
..|.+|...+.-. -..+++.+..+-+.-+.+.... ...||..++-.||+..-++.|.+++.+
T Consensus 274 elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf--P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 274 ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF--PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC--ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3455555443221 1233444444444444443222 244777777778887777777776654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0001 Score=69.36 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=100.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-H---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-N---ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KT 445 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t 445 (639)
....+-.....+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34456667778889999999999999987753 33 2 45677888899999999999999999875432111 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHH-----------------HHHHHHHcCCChhHHHHH
Q 037477 446 WTILIQGHCAA--------NEVDRALLCFAKMMEKNYDADADLLD-----------------VLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 446 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~-----------------~li~~~~~~g~~~~A~~~ 500 (639)
+..+..++... |+.++|.+.++.+.+.... +...+. .+...|.+.|++++|...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 44445555544 6788899999888876322 222221 122334444555555555
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 501 LVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 501 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
++...+.+.-.|. ...+..+..++.+.|++++|...++.+.
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555443222221 2344445555555555555555544443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0036 Score=71.80 Aligned_cols=270 Identities=12% Similarity=0.037 Sum_probs=161.6
Q ss_pred HhccChHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 037477 241 ELRIYPVKALGFFRWVGEHSGYKH---NTITYNGILRVLARHESVRDFWNVVEEMKKE----GY-EMDIDTYIKISRQFQ 312 (639)
Q Consensus 241 ~~~~~~~~A~~~f~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~ 312 (639)
...+++++|...++...+...... -....+.+...+...|++++|...+++.... |- .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 446788888888887653211111 1234566667778899999999888887643 21 111334556667788
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC---CCChhhHHHHHHHHHccCCh
Q 037477 313 KFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGN---SLSKSVYDGIHRALTKLGRF 389 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 389 (639)
..|++++|...+++..+.. ...+. ......+..+...+...|++
T Consensus 543 ~~G~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLI---------------------------------EEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HCCCHHHHHHHHHHHHHHH---------------------------------HHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 8999999999888765310 00000 00112233345556667899
Q ss_pred hHHHHHHHHHHHCC--CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcCCH
Q 037477 390 DEAEKMMKAMKNAG--FEP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP-DIKTW-----TILIQGHCAANEV 459 (639)
Q Consensus 390 ~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~-----~~li~~~~~~g~~ 459 (639)
++|...+.+..... ..+ ....+..+...+...|++++|...+.+........ ....+ ...+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 99888887765421 111 12334445566778899999988888775421100 11111 1122444567888
Q ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCCC-HHHHHHHHHHHHhcCCHHH
Q 037477 460 DRALLCFAKMMEKNYDADA---DLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRPW-QATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~ 532 (639)
+.|.+.+............ ..+..+..++...|++++|...+++.... .+..++ ..+...+..++.+.|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888887665542211111 11345566778889999998888877543 122222 2355566677888899999
Q ss_pred HHHHHHHHHhC
Q 037477 533 AMNLLRLMKKQ 543 (639)
Q Consensus 533 A~~~~~~m~~~ 543 (639)
|...+.+..+.
T Consensus 750 A~~~L~~Al~l 760 (903)
T PRK04841 750 AQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHH
Confidence 99988888764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00011 Score=69.03 Aligned_cols=186 Identities=11% Similarity=0.048 Sum_probs=126.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA--DL 480 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~ 480 (639)
......+-.+...+...|++++|...|+++...... |. ...+..+..++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888899999999999999998875422 11 246677888999999999999999999886422111 23
Q ss_pred HHHHHHHHHcC--------CChhHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 481 LDVLINGFLSQ--------KRVNGAYKLLVEMIEKVRLRPWQA-TFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 481 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
+..+..++... |++++|.+.|+.+.+. .|+.. .+..+... +...... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~------~~-----~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL------AG-----KELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH------HH-----HHHH
Confidence 44445555544 6788899999988876 34321 22222111 0011100 00 0113
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 552 FVQYISKFGTVEDASEFLKALSVKEY---PSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 552 ~~~ll~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
...++...|+.++|...++...+..| .....+..+..+|.+.|++++|.++++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445688999999999999987743 3568899999999999999999999888643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0012 Score=67.90 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=58.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.|....|+.+|++.. .|.-+|.+|...|+..+|..+..+-.++ +||...|..+.+......-+++|.+
T Consensus 411 lGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawE 478 (777)
T KOG1128|consen 411 LGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWE 478 (777)
T ss_pred cchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHH
Confidence 366777888887763 5777888888888888888888887774 7888888888888777777888888
Q ss_pred HHHHhh
Q 037477 323 LFEFMM 328 (639)
Q Consensus 323 l~~~m~ 328 (639)
+++...
T Consensus 479 lsn~~s 484 (777)
T KOG1128|consen 479 LSNYIS 484 (777)
T ss_pred Hhhhhh
Confidence 887653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.6e-05 Score=73.64 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=167.5
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
-+.+.|++.+|.=.|+...+.. +-+...|.-|...-+.+++-..|+..+.+..+.... |....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999999988775 446788999999999999999999999998886543 66777788888999999999
Q ss_pred HHHHHHHHHHcCCCC--------CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 462 ALLCFAKMMEKNYDA--------DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEA 533 (639)
Q Consensus 462 a~~~~~~m~~~g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 533 (639)
|+++++..+....+- +...-+. ..+.......+..++|-++....+..+|...+..|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999887643110 0000000 112222234566777877777667556666788887778889999999
Q ss_pred HHHHHHHHhCCCCCChHhHHHH----HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 534 MNLLRLMKKQNYPPFPEPFVQY----ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l----l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
.+.|+.... ++|+..++..- ++...+.++|+..+++..+..|.-..++..|.-.|...|.|+||.+.|-.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999987 67877655333 45667899999999999999888888888899999999999999888765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-06 Score=52.73 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCH
Q 037477 130 TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEE 164 (639)
Q Consensus 130 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~ 164 (639)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0014 Score=71.19 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=88.8
Q ss_pred CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHH
Q 037477 261 GYKH-NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 261 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (639)
++.| +...+..|+..+...|++++|.++.+...+. .|+ ...|-.+...+.+.++..++..+ .+.+. .+...-
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccc
Confidence 3444 6788999999999999999999999976665 343 33344444466777776666555 22211 111111
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL 418 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 418 (639)
|+.+- .+...+... ..+...+-.+..+|-+.|+.++|..+++++.+.. +-|+...|.+...|
T Consensus 99 ~~~ve---------------~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 99 WAIVE---------------HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred hhHHH---------------HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 11111 111111110 1111234445555555555555555555555544 33445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
... ++++|.+++.+.... |...+++..+.++|.++...
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 555 555555555444432 34444555555555555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.011 Score=59.49 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHc--CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCC
Q 037477 479 DLLDVLINGFLS--QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR--------LMKKQNYPPF 548 (639)
Q Consensus 479 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~ 548 (639)
..+..++..+.+ .....++..++....+.+.. -....--.++......|+++.|++++. .+.+.+..|.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 334444443322 22467788888777664221 124455566777788999999999999 6666666776
Q ss_pred hHhH-HHHHhhcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 549 PEPF-VQYISKFGTVEDASEFLKALSVK-------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 549 ~~~~-~~ll~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
...+ ..++.+.++.+.|..++.+.... .+.-...+..++..-.+.|+-++|..+++++.+
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 6544 44455666666666666655433 122233444455555688999999999999744
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0054 Score=55.52 Aligned_cols=129 Identities=21% Similarity=0.243 Sum_probs=65.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cC
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL----SQ 491 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~ 491 (639)
..|+..|++++|++..+... +......=+..+.+....+-|.+.+++|.+-. +..|.+-|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555666666665554411 22222222333445555566666666665532 3344443433332 23
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI 556 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 556 (639)
+++.+|.-+|++|.++ ..|+..+.+.+..++...|++++|..++++..... ..+..++..++
T Consensus 187 ek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nli 248 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLI 248 (299)
T ss_pred hhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHH
Confidence 4466666666666543 34455556666666666666666666666665532 22344444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=51.50 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 037477 129 STVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYI 162 (639)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~ 162 (639)
+.+||.+|.+|++.|+++.|..+|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.011 Score=58.42 Aligned_cols=154 Identities=16% Similarity=0.059 Sum_probs=115.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChh
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVN 495 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 495 (639)
.+...|++++|+..++.+...-. -|...+....+.+.+.++.++|.+.++++... .|+ ....-.+-++|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 34567899999999999887642 25666677788889999999999999999886 444 556667778899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcC
Q 037477 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
+|..+++...... +-|...|..|.++|...|+..++.....++. .-.|+++.|+..+....+.
T Consensus 392 eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~---------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGY---------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHH---------------HhCCCHHHHHHHHHHHHHh
Confidence 9999999887653 3345589999999999999888877666554 4568888888888877776
Q ss_pred CCC---CHHHHHHHHHHH
Q 037477 576 EYP---SSAAYLQVFESF 590 (639)
Q Consensus 576 ~~~---~~~~~~~l~~~~ 590 (639)
... ++.-+...++..
T Consensus 455 ~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 455 VKLGFPDWARADARIDQL 472 (484)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 433 333344444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0046 Score=60.20 Aligned_cols=214 Identities=12% Similarity=0.101 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 269 YNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR-MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
++.+-..+...++.++|+.+.+++.+.. +-+..+|+.--.++...| ++++++..++.+.+...+.-
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------------ 106 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------------ 106 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------------
Confidence 3444445666788899999999988763 224455666655666666 57888888888776422111
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC--hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR--FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.+|+.--..+.+.|+ .++++.+++.+.+.. +-+..+|+.....+...|+++
T Consensus 107 --------------------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 107 --------------------------QIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred --------------------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 112211112223333 256777787777665 457788888888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCh
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAA---NE----VDRALLCFAKMMEKNYDADADLLDVLINGFLSQ----KRV 494 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~ 494 (639)
++++.++++.+.+.. |...|+.....+.+. |. .+...+...+++... +-|...|+-+...+... +..
T Consensus 160 eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccc
Confidence 999999999887765 667777666555544 22 245667776777654 44677777777777663 344
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 495 NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
.+|..++.+..+. + ..+......|++.|+.
T Consensus 238 ~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 238 PEVSSVCLEVLSK-D-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHh
Confidence 5677777776542 1 2234556666776664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.1e-06 Score=51.56 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMD 300 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 300 (639)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.026 Score=60.50 Aligned_cols=482 Identities=12% Similarity=0.092 Sum_probs=241.4
Q ss_pred HHHHhcCCcHHHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCChHHHHHHHHHHhccCChHHHH
Q 037477 71 ELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDK-KQFRPSSTVYSLMLRNLVNKDSLKQFW 149 (639)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~ 149 (639)
.+|..|+-..-+...-+-+-.+.++++...+|.. .++. -+++.+..... .+-..|+.--..-+.++...+-..+-+
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e--~n~~-rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNE--ENPY-RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhc--cChH-HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 4455555544444444444455667777777654 2222 13344444331 223356677777888999999999999
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhcc
Q 037477 150 VTLRRMKEDH--CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMK 227 (639)
Q Consensus 150 ~l~~~m~~~g--~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (639)
+++++..-.. +.-+...-+.||-...+..+ ..+-+..+.+-.... +++ ..+....+-.+++...+++..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~----trVm~YI~rLdnyDa-~~i----a~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADR----TRVMEYINRLDNYDA-PDI----AEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcCh----HHHHHHHHHhccCCc-hhH----HHHHhhhhHHHHHHHHHHHhc
Confidence 9999887553 11222333445544444421 122222222222111 112 222223344556666666654
Q ss_pred CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 228 IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKI 307 (639)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 307 (639)
.. ...+.++-+--+..+.|.++-++.. ....|..+..+-.+.|.+.+|.+-|-+. -|+..|..+
T Consensus 1076 ~n---~~A~~VLie~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eV 1139 (1666)
T KOG0985|consen 1076 MN---VSAIQVLIENIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEV 1139 (1666)
T ss_pred cc---HHHHHHHHHHhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHH
Confidence 32 2223333333455667777766653 3457888888888888888887766432 277889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 387 (639)
+....+.|.|++-.+++....+..-.|...+ .|+-+|++.+. .. +++..-..|+..-...+-+-|...|
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~r--l~-------elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNR--LT-------ELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhch--HH-------HHHHHhcCCCchhHHHHhHHHhhhh
Confidence 9999999999999988887777766666543 56666666553 11 1122222334333444444444445
Q ss_pred ChhHHHHHHHHHHHC--------------------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 388 RFDEAEKMMKAMKNA--------------------GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~--------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
.++.|.-+|.....- .-..+..||..+-.+|...+.+.-| +|-...+.....-..
T Consensus 1209 ~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELE 1283 (1666)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHH
Confidence 555444444322100 0011333444444444443333222 111111222333445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
-++.-|-..|-+++...+++...... +.....|+-|.-.|++- ++++..+-++-...+-+ .-.+|+++-++
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN-------ipKviRA~eqa 1354 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN-------IPKVIRAAEQA 1354 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc-------hHHHHHHHHHH
Confidence 56666666666666665555443221 22344455555455543 33444333333322211 12334444444
Q ss_pred CCHHHHHHHHHHHHh----------C-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037477 528 RRLEEAMNLLRLMKK----------Q-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 528 g~~~~A~~~~~~m~~----------~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (639)
..|.+..-++.+-.+ + .-.-+...|..++.+-.+++--.+..+-..+. .+...+-|+.++.-.=+.
T Consensus 1355 hlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~~---~P~llnDlL~vL~pRlDh 1431 (1666)
T KOG0985|consen 1355 HLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLDF---HPLLLNDLLTVLSPRLDH 1431 (1666)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHh---ChHHHHHHHHhcccccCc
Confidence 444444444433222 1 01112234455555555554433333333332 445556666666655566
Q ss_pred HHHHHHHhhCCc
Q 037477 597 YEAKDLLYKCPH 608 (639)
Q Consensus 597 ~~A~~~~~~m~~ 608 (639)
..+..+|.+...
T Consensus 1432 ~r~v~~f~K~~~ 1443 (1666)
T KOG0985|consen 1432 TRTVSIFSKAGQ 1443 (1666)
T ss_pred hHHHHHHHhcCC
Confidence 667777776543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.026 Score=59.93 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 248 KALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVE-EMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEF 326 (639)
Q Consensus 248 ~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (639)
-|.+.++.+.++.|---+..-...-...+-..|.+++|++++. ..-+.-...+...-+.-+..+...++|.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3556666666555522233333333444556677888888773 333333333455555666777777777777777777
Q ss_pred hhcCC
Q 037477 327 MMDGP 331 (639)
Q Consensus 327 m~~~g 331 (639)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 76654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.8e-06 Score=50.45 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 037477 267 ITYNGILRVLARHESVRDFWNVVEEMKKEGYEM 299 (639)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 299 (639)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=63.80 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCC--hhHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING-FLSQKR--VNGAY 498 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~ 498 (639)
++.+++...++...+... .|...|..+...|...|++++|...+++..+.. +-+...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 333444444444333322 144444444444444444444444444444432 1233333333333 233333 24444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 499 KLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+++++..+...- +...+..+...+.+.|++++|+..|+++.+
T Consensus 131 ~~l~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN--EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444433111 223344444444444444444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0074 Score=58.77 Aligned_cols=224 Identities=8% Similarity=0.018 Sum_probs=156.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
+..+-..+...++.++|+.+..++.+.. +-+..+|+..-..+...| ++++++..++++.+...+ +..+|+.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3344455667889999999999998764 334556766666666777 689999999999987654 5667876655566
Q ss_pred HcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 037477 455 AANEV--DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA---RR 529 (639)
Q Consensus 455 ~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~ 529 (639)
+.|.. ++++.+++++++.. +-|..+|+...-.+.+.|+++++++.++++.+. +. -|...|+...-.+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHHHHHHHHHHhcccccc
Confidence 66653 67889999999876 447888888888888999999999999999886 22 2344555544444443 22
Q ss_pred H----HHHHHHHHHHHhCCCCCChH-hH---HHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---
Q 037477 530 L----EEAMNLLRLMKKQNYPPFPE-PF---VQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG--- 594 (639)
Q Consensus 530 ~----~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 594 (639)
. ++.++...++... .|+.. .| ..++.. .++..+|.+.+.+.....+.+......|++.|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence 2 4567777666653 34432 22 333333 244567888888887777888999999999998643
Q ss_pred ---------------CHHHHHHHHhhC
Q 037477 595 ---------------RHYEAKDLLYKC 606 (639)
Q Consensus 595 ---------------~~~~A~~~~~~m 606 (639)
..++|.+++..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHH
Confidence 235677777776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0052 Score=55.64 Aligned_cols=258 Identities=18% Similarity=0.140 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 264 HNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 264 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
|+..-|| ++-+--.|.+..++..-....... -+...-.-+-++|...|.+..... +..... .|.......+
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~- 78 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLL- 78 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHH-
Confidence 3334444 344455677777766655544331 244444445566666776554332 222211 2222222221
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
..+.............+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHR 152 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHH
Confidence 222222221223344444444444444443444444567888899999998887622 22233333455667888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
++-|...+++|.+- -+..|.+.|.+++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..
T Consensus 153 ~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 153 FDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 89999999999874 356777777777665 34678888899888764 57888888888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEE-AMNLLRLMKK 542 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 542 (639)
++++...+..-. ..+...+|-.-...|...+ ..+.+.....
T Consensus 229 lL~eaL~kd~~d--petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 229 LLEEALDKDAKD--PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHhccCCC--HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999888764333 3355555554445555433 3345555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00029 Score=69.79 Aligned_cols=136 Identities=21% Similarity=0.160 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH----HH
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF----VQ 554 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ 554 (639)
.....|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++++..+. .|....+ ..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34456667777788899999999998876 365 4455777777888888999998888853 2433222 23
Q ss_pred HHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 555 YISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 555 ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
++.+.++.+.|..+.+++.+..|.+..+|..|+.+|.+.|++++|+-.++.||-...++........
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~~ 309 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLKRPV 309 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhhcCC
Confidence 3457799999999999999999999999999999999999999999999999877666554444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.019 Score=56.78 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=116.1
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEV 459 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~ 459 (639)
-.+...|++++|++.+..+.... +-|+.-+....+.+.+.|+.++|.+.++.+.... |+ ...+-.+.++|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCCh
Confidence 34567899999999999988773 3455556667789999999999999999999864 55 56777788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 460 DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRL 539 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (639)
.+|..+++...... +-|...|..|-.+|...|+..++..-.-+ +|.-.|++++|...+..
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHH
Confidence 99999999988875 66889999999999999998887765544 35667999999999988
Q ss_pred HHhC
Q 037477 540 MKKQ 543 (639)
Q Consensus 540 m~~~ 543 (639)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00075 Score=60.91 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH----HHH-HhhcCC--HH
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF----VQY-ISKFGT--VE 563 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~l-l~~~g~--~~ 563 (639)
.++.+++...++...+. -..+...|..+...|...|++++|...+++..+. .|+.... ... +...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 34444444444444432 1223445555555555555555555555555542 2322211 111 123343 35
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 564 DASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 564 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+|.+++++..+..|.+..++..+...+.+.|++++|+..|+++
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666665555555666666666666666666666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.016 Score=57.86 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=53.9
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~ 321 (639)
.++.+.|+..|-....-. ++|.+.|..=..+|+..|++++|++=-.+-.+. .|+ ...|.-...++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 366677777776653221 336677777777777777777776544444433 455 345777777777777777777
Q ss_pred HHHHHhhcC
Q 037477 322 KLFEFMMDG 330 (639)
Q Consensus 322 ~l~~~m~~~ 330 (639)
.-|.+-++.
T Consensus 91 ~ay~~GL~~ 99 (539)
T KOG0548|consen 91 LAYSEGLEK 99 (539)
T ss_pred HHHHHHhhc
Confidence 777765543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.016 Score=54.49 Aligned_cols=313 Identities=13% Similarity=0.019 Sum_probs=192.8
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI-KISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~ 321 (639)
+++...|+..|+...+ |-+-+-.++-.-...|...|+-..|+.=+....+. +||-..-. --...+.+.|.++.|.
T Consensus 51 ~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred hhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHH
Confidence 4667778888887742 21222233334456788889888888888888876 66654322 1234567899999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
.=|+...+.. |+..+- ..+..+. ..+.+. ......+..+...|+...|+.....+.+
T Consensus 127 ~DF~~vl~~~--~s~~~~---~eaqskl-----~~~~e~-------------~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 127 ADFDQVLQHE--PSNGLV---LEAQSKL-----ALIQEH-------------WVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHHHhcC--CCcchh---HHHHHHH-----HhHHHH-------------HHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 9999998763 322111 1111110 000011 1123355566778999999999998887
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.. +-|...|..-..+|...|++..|+.=++...+..-. +..++--+-..+-..|+.+.++...++.++. .||....
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C 259 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC 259 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence 64 557777888888999999999998877776654433 5556666677778889988888888877765 4554322
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH--HHHh--
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFV--QYIS-- 557 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~-- 557 (639)
- ..-..+.+..+.++.|.+ ....++|.++++-.+...+........+++ .++|
T Consensus 260 f------~~YKklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 260 F------PFYKKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred H------HHHHHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 1 111122223333333322 233455666666666555533221122221 2223
Q ss_pred --hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 558 --KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 558 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
..|++.+|++...++.+..|.+..++.--..+|.-...+++|+.-|++..+.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3477777888778877777777888877788887777888887777775443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.026 Score=56.44 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=136.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 270 NGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
..+.++.-+..+++.|.+-++...+.. -+..-++....+|...|.+.++...-+...+.|.. ....|+.+-.+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~---- 300 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA---- 300 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH----
Confidence 345555556666777777776666553 34444556666677777766666655554433211 11111111111
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
+..+-.+|.+.++++.|...|.+.......|+. ..+....+++..
T Consensus 301 --------------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 301 --------------------------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALK 345 (539)
T ss_pred --------------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHH
Confidence 122344667778888888888886654333332 123334445554
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 430 VLDEMEENGCIPDI-KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 430 ~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
..+...-.+ |.. .-...-...+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..|++--+...+.
T Consensus 346 ~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL- 421 (539)
T KOG0548|consen 346 EAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL- 421 (539)
T ss_pred HHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 444433322 222 111222556677888888888888888876 556777888888888888888888776665543
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhc
Q 037477 509 RLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKF 559 (639)
Q Consensus 509 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 559 (639)
.|+ ...|..=..++....++++|++.|.+..+. .|+..-+...+.+|
T Consensus 422 --~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 422 --DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRC 469 (539)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHH
Confidence 333 223333333444455677777777777763 36655555555433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0061 Score=66.51 Aligned_cols=148 Identities=10% Similarity=0.058 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCchhhHHHHHHHHHHHhhhccchhHHHH
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILG-VLKKAKKASDLAALNQFHDGMVKEIAMDNVAKT 205 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (639)
.+...|..||..+...+++++|.++.++-.+. .|+...+-.... .+.+.++..++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------------
Confidence 45678999999999999999999999966554 355443332222 34444443333221
Q ss_pred HHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 206 LVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDF 285 (639)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 285 (639)
..++.......| .+.+.+....-+ +.-+..++-.+..+|-+.|+.++|
T Consensus 88 ---------------~~l~~~~~~~~~---------------~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 88 ---------------NLIDSFSQNLKW---------------AIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred ---------------hhhhhcccccch---------------hHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHH
Confidence 111111111112 222222211111 233556788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 286 WNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 286 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
..+++++.+.. +-|+...|.+...|+.. ++++|++++.....
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 99999999987 56888999999999999 99999999887754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0043 Score=66.81 Aligned_cols=132 Identities=12% Similarity=0.132 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
+...+-.+.....+.|..++|+.+++...+. .|| ......+...+.+.+++++|....++....... +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 3555666666666667777777777666655 343 334455566666677777777776666665432 444555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
.++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666677777777777766632 233556666666666667777777777666653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=56.42 Aligned_cols=95 Identities=7% Similarity=-0.043 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+...|++++|...|+........ +...|..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444556666777777777777777665432 56667777777777777777777777777654 3466666677777777
Q ss_pred CCChhHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0034 Score=56.79 Aligned_cols=156 Identities=16% Similarity=0.114 Sum_probs=90.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
+-..+...|+-+....+........ +.|....+..+....+.|++..|...|++..... .+|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 4445555566665555555543221 3344445556666666777777777776666543 2466667777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
.+.|..-|.+..+.. .-+...+|.|.-.|.-.|+.+.|..++...... -.-|...-..+.......|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777666666643 123344555555556666777777766665543 12244455555555666667666666554
Q ss_pred H
Q 037477 539 L 539 (639)
Q Consensus 539 ~ 539 (639)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0021 Score=69.13 Aligned_cols=212 Identities=12% Similarity=0.059 Sum_probs=140.8
Q ss_pred ChhhHHHHHHHHHccCChhHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAE-KMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
++...+.+=.+.+..|..++|- +++.+.. .++..........+++.-....... ...+...+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 3344444445666667766663 3433332 2333333333333333333333332 234678888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARR 529 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 529 (639)
......|..++|..+++...+.. +-+......+...+.+.+++++|+..+++.... .|+ ......+..++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998863 334566677788899999999999999988764 454 4456667778889999
Q ss_pred HHHHHHHHHHHHhCCCC-CC-hHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 530 LEEAMNLLRLMKKQNYP-PF-PEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~-p~-~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+++|.++|++....+.. ++ ...+...+...|+.++|...|++..+...+....|+.++ ++...-..++++.
T Consensus 170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHc
Confidence 99999999999873321 11 224556667889999999999999888666666655443 3334455666665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00073 Score=57.56 Aligned_cols=96 Identities=9% Similarity=-0.149 Sum_probs=85.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++...... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 4456778889999999999999998875 55788899999999999999999999999998754 377889999999999
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 037477 456 ANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g 473 (639)
.|+.++|...|+..++..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998864
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0042 Score=56.20 Aligned_cols=157 Identities=15% Similarity=0.061 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
.-+-..+...|+-+....+......... .|.......+....+.|++..|...+.+..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4444556666776766666665443322 245555567777777788888887777777654 66777777777777788
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh--HHHHHhhcCCHHHHHHHH
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP--FVQYISKFGTVEDASEFL 569 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~g~~~~a~~~~ 569 (639)
|+.++|..-|.+..+-.+-.|. .++.|.-.+.-.|+++.|..++......+......- +.-+....|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888887777777665333333 556666666667777777777777765443222221 122235667777777665
Q ss_pred HHh
Q 037477 570 KAL 572 (639)
Q Consensus 570 ~~~ 572 (639)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.063 Score=57.79 Aligned_cols=474 Identities=9% Similarity=-0.007 Sum_probs=229.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCchhhH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGV--LKKAKKASDL 183 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~--~~~~~~~~~~ 183 (639)
.++...|..-|+...+.. +.|..+|..+..+|...|++..|.++|.+..... |+ .+|.....+ -+..|.+.++
T Consensus 575 a~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhHHHH
Confidence 467888999998887622 2477899999999999999999999998877643 43 344443333 2334555555
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhc-------CCc----hHHHHHHHhhccCcC----CHHHHHHHHHHhccChHH
Q 037477 184 AALNQFHDGMVKEIAMDNVAKTLVDVVLG-------SDW----DDKIGKKLEDMKIEL----SDNFVLTVLKELRIYPVK 248 (639)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~----~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 248 (639)
....+..-..... ...+...+...+.+ .|. .+.+++.++...+.. ..+..... -...
T Consensus 650 ld~l~~ii~~~s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi------~asd 721 (1238)
T KOG1127|consen 650 LDALGLIIYAFSL--ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWI------VASD 721 (1238)
T ss_pred HHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHH------HHhH
Confidence 4333322222211 11111111111111 111 111111111111000 00000000 0124
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh---h---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC---
Q 037477 249 ALGFFRWVGEHSGYKHNTITYNGILRVLARHESV---R---DFWNVVEEMKKEGYEMDIDTYIKISRQFQK----FR--- 315 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g--- 315 (639)
|..+|-+.. .. .|+.....++..-.-+.+.. | -+.+.+-.-. ....+..+|..++..|.+ .|
T Consensus 722 ac~~f~q~e--~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 722 ACYIFSQEE--PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred HHHHHHHhc--cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcc
Confidence 666777662 22 33333333333222223322 1 0111111111 112235555555544433 11
Q ss_pred -CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCChhHHH
Q 037477 316 -MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGN-SLSKSVYDGIHRALTKLGRFDEAE 393 (639)
Q Consensus 316 -~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 393 (639)
+...|+..+....+. ..+...+-..+...+ +.++...+... .+...-. +....+|..+--.+.+..+++.|.
T Consensus 797 ~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVls--g~gnva~aQHC--fIks~~sep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSL--CANNEGLWNALGVLS--GIGNVACAQHC--FIKSRFSEPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred hhHHHHHHHHHHHHHH--hhccHHHHHHHHHhh--ccchhhhhhhh--hhhhhhccccchhheeccceeEEecccHHHhh
Confidence 223555555555432 223333333333332 22222222221 1222222 223456666767778888999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037477 394 KMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME----ENGCIPDIKTWTILIQGHCAANEVDRALLCFAKM 469 (639)
Q Consensus 394 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 469 (639)
..|...+... +.+...|--....-...|+.-++..+|..-- ..|-.|+..-|-....-...+|+.++-....+.+
T Consensus 871 ~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 9999887663 3345556544444456777777777776621 2333455555555555556666655544333332
Q ss_pred HH---------cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHH
Q 037477 470 ME---------KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI----EKLLGARRLEEAMNL 536 (639)
Q Consensus 470 ~~---------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~ 536 (639)
-. .|.+-+...|.+.....-+.+.+.+|..+..+...--..+-+...|+.+. +.++..|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 21 23344556676666666667777776666655432211233445566433 233445666655443
Q ss_pred HHHHHhCCCCCChHhHHHHH--hhcCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 537 LRLMKKQNYPPFPEPFVQYI--SKFGTVEDASEFLKALSVK---EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~ll--~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
+..... ..+......-+ --.|+++++.+.|++.... ...-......++.....+|.-+.|..++-++.
T Consensus 1030 ~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1030 SWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 332211 11111111111 2357788888888877765 22223445555566666777777777766653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.7e-05 Score=47.08 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 037477 130 TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC 160 (639)
Q Consensus 130 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~ 160 (639)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999885
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=55.92 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
...+...+...|++++|...|+.....+. .+...|..+...+...|++++|..+++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 44445555566666666666666555432 244555556666666666666666666655543 3344455555556666
Q ss_pred CCChhHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|...|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666655543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00033 Score=69.73 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNA--GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
+......+++.+....+++++..++...... ....-..|..++|+.|.+.|..++++.++..=...|+-||..|+|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555566666666555543 11111223346666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 450 IQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666555555555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.066 Score=56.98 Aligned_cols=172 Identities=10% Similarity=0.036 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
|..|..++-.+|.+.|+.++|..+|+..... -|+......+..+|.+.+++.+-.+.--+|.+ ...-+...+=.+++
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVIS 152 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHH
Confidence 5666666666677777777777777766654 45555556666666666655443332222222 11223333333333
Q ss_pred HHhhcCCCc--------hhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHH-HHHHHCCCCCCHHhHHHH
Q 037477 345 SISSINNPD--------LGLVFRVANKYESLG-NSLSKSVYDGIHRALTKLGRFDEAEKMM-KAMKNAGFEPDNITYSQV 414 (639)
Q Consensus 345 ~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~~~~~~~~~l 414 (639)
.+....... ...+.+..+.+.+.+ .-.+..=.......+...|++++|.+++ ....+.-...+...-+--
T Consensus 153 lilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 153 LILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred HHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 333222110 223444444444433 2222222222344556778899999888 444444334444555667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGC 439 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~ 439 (639)
++.+...+++.+..++-.++...|.
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhCC
Confidence 7888889999999998888888763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.013 Score=59.06 Aligned_cols=257 Identities=11% Similarity=0.077 Sum_probs=135.3
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.|+..+|.-.|+...++. +-+...|--|-..-...++-..|+..+.+..+.. +-+....-+|.-.|...|.-..|++
T Consensus 298 nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred cCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 466778888888775432 3377888888888888888888888888888774 4467777888888888888888888
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH-H
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK-N 401 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 401 (639)
.++.......+ - ..+..+ ...+... ..+..++. ..+....++|-++. .
T Consensus 375 ~L~~Wi~~~p~--y---~~l~~a-~~~~~~~------------~~~s~~~~-------------~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 375 MLDKWIRNKPK--Y---VHLVSA-GENEDFE------------NTKSFLDS-------------SHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHhCcc--c---hhcccc-Ccccccc------------CCcCCCCH-------------HHHHHHHHHHHHHHHh
Confidence 88877543210 0 000000 0000000 00000111 11122233333332 2
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.+..+|+.....|--.|--.|++++|...|+........ |...||.|...++...+.++|+..|.+.++....--.+-|
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 332345555555555555566666666666665554322 4455666666666666666666666666554211111223
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEK--------VRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
| |.-+|...|.+++|.+.|-+...- ....++...|..|=.++.-.++.+-+.+
T Consensus 503 N-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 503 N-LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred h-hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2 223455556666665555443221 0112233455555455555555543333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00028 Score=70.19 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=105.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN--GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL 480 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 480 (639)
+.+.+......+++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667788888999999999999999999998865 2222345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
+|.||+.+.+.|++..|.++..+|... +...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999887 5556667777777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.1e-05 Score=46.73 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEG 296 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (639)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0025 Score=57.16 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=120.7
Q ss_pred hcCCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHcCCC
Q 037477 420 KAGRFEDACNVLDEMEE---NG-CIPDIKT-WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN-GFLSQKR 493 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~---~~-~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~ 493 (639)
...+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|..+++++...- |...-...|=. -+-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 35677888888888763 34 4455543 4455666677888888888888887753 33222111111 2345678
Q ss_pred hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH---HHhhcCCHHHHHHHHH
Q 037477 494 VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQ---YISKFGTVEDASEFLK 570 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---ll~~~g~~~~a~~~~~ 570 (639)
+++|.++++.+.+.. +.|..+|-.=+...-..|+--+|++-+....+. +..|...|.. ++...|+++.|.-.++
T Consensus 102 ~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 888888888888762 335566665555555667767777776666653 5556666543 4467788888888888
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHhhCC
Q 037477 571 ALSVKEYPSSAAYLQVFESFFNEG---RHYEAKDLLYKCP 607 (639)
Q Consensus 571 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~ 607 (639)
++.-..|.++-.+..+.+.+.-.| +.+-|.+++.+-.
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888778888888888888776655 4555777777753
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00083 Score=66.65 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
.....++..+...++++.|.++|+++.+.. |+ ....+...+...++-.+|.+++++..+.... +......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344556666677778888888888887663 44 3445667777777777888888777754322 555666666667
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
.+.++.+.|+.+.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.++
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77888888888888877763 3344577778888888888888887777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0016 Score=55.59 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh-----HH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP-----FV 553 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-----~~ 553 (639)
.|..++..+ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+........|.... +.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344455444 36777777777777777633221 122333445667778888888888888877552232221 12
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
.++...|++++|...++.... .+..+..+....++|.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233567888888888866432 344566777888888999999999888875
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00077 Score=52.35 Aligned_cols=77 Identities=8% Similarity=0.296 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGC-IPDIKTWTILIQGHCAANE--------VDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334444455666666666666666666 5666666666666554321 2234555566666666666666666
Q ss_pred HHHHHH
Q 037477 484 LINGFL 489 (639)
Q Consensus 484 li~~~~ 489 (639)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 655544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0018 Score=54.65 Aligned_cols=118 Identities=14% Similarity=0.004 Sum_probs=83.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC
Q 037477 430 VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR 509 (639)
Q Consensus 430 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (639)
.|++....... +......+...+...|++++|.+.++.....+ +.+...+..+...+.+.|++++|..+++...+..
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34444443221 33455667777888899999999998888765 4467778888888888899999999888876642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH
Q 037477 510 LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFV 553 (639)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 553 (639)
..+...+..+...|...|++++|...++...+. .|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 334556666777888889999999988888773 35554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.023 Score=51.18 Aligned_cols=184 Identities=18% Similarity=0.185 Sum_probs=117.9
Q ss_pred CChhHHHHHHHHHHH---CC-CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHH
Q 037477 387 GRFDEAEKMMKAMKN---AG-FEPDNI-TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL-IQGHCAANEVD 460 (639)
Q Consensus 387 g~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-i~~~~~~g~~~ 460 (639)
.+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++...= |...-...| ..-+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 455666666666543 23 334433 34455566667788888888888877653 332211111 12234567888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
+|.++++.+++.+ +.|.+++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+.+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888776 556666766666666677777888777777765 3557778888888888888888888888887
Q ss_pred HhCCCCCChHhHHHHH-------hhcCCHHHHHHHHHHhhcCCC
Q 037477 541 KKQNYPPFPEPFVQYI-------SKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 541 ~~~~~~p~~~~~~~ll-------~~~g~~~~a~~~~~~~~~~~~ 577 (639)
.- +.|....+..-+ +...+++.+.+++.+..+..+
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 75 446554443332 233466777788877777644
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0012 Score=51.31 Aligned_cols=81 Identities=10% Similarity=0.233 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------ChhHHHHHHHHHHHhCCCCCCHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNY-DADADLLDVLINGFLSQK--------RVNGAYKLLVEMIEKVRLRPWQA 515 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~p~~~ 515 (639)
|-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|++|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334566677777999999999999999999 899999999999887654 345678889999887 8999999
Q ss_pred HHHHHHHHHHh
Q 037477 516 TFKTLIEKLLG 526 (639)
Q Consensus 516 ~~~~li~~~~~ 526 (639)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0038 Score=53.34 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=53.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN---ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KTWTILI 450 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~li 450 (639)
|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+........|+. ...-.+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 2455555555555555442 1111 11112334455555555555555555554322211 1222344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
..+...|++++|+..++...... .....+...-+.|.+.|+.++|...|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555554422221 122233344445555555555555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0018 Score=57.09 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA----------------NEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
|.++=....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444444444444444554444443321 12345666666666666666666666666
Q ss_pred HHHHcCCC
Q 037477 486 NGFLSQKR 493 (639)
Q Consensus 486 ~~~~~~g~ 493 (639)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66665554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0092 Score=60.55 Aligned_cols=258 Identities=12% Similarity=0.137 Sum_probs=127.6
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHH
Q 037477 262 YKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSL 341 (639)
Q Consensus 262 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (639)
+.|-.+.+.+-+..|...|.+++|.++- +......-|.-+......+=+++-|.+.|.+....
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------- 614 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL----------- 614 (1081)
T ss_pred eecccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------
Confidence 4555666677777888889988886542 11112223444444333444455555444444321
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHhHH-----HHH
Q 037477 342 LLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-DNITYS-----QVI 415 (639)
Q Consensus 342 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~-----~li 415 (639)
..-+...-++++.+.|..|+... +...++-.|++.+|-++|.+- |... -...|+ -..
T Consensus 615 -----------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 615 -----------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYA 677 (1081)
T ss_pred -----------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHH
Confidence 22223333445555566565443 233455566666666666532 2110 000111 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHcCC---CCCHHHHHHH
Q 037477 416 FGLCKAGRFEDACNVLDEMEE--NGCIPDIKTWTILIQGHCAANEVDRALLCFA------KMMEKNY---DADADLLDVL 484 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~------~m~~~g~---~~~~~~~~~l 484 (639)
.-|.+.|..++-..+.++-.+ .+++-. .+....+...|+.++|..+.. -+.+-+- ..+..+...+
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 333334443333332222111 111111 123344455666666655421 1111111 1233444444
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHHhhcCCHH
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYISKFGTVE 563 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~g~~~ 563 (639)
...+.+...+.-|-++|..|-+. ..+++.....++|++|..+-++..+ +.||.. .|...++...+++
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHH
Confidence 44555666777888888877432 4567778888999999888877665 445543 4555666555555
Q ss_pred HHHHHH
Q 037477 564 DASEFL 569 (639)
Q Consensus 564 ~a~~~~ 569 (639)
+|.+.|
T Consensus 822 EAqkAf 827 (1081)
T KOG1538|consen 822 EAQKAF 827 (1081)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=61.40 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG-HCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
.+|..+|...-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3577777777777777777778777775432 123334333333 22345666677888777765 35566777777777
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+.+.|+.+.|..+|++......... ....|...++.=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777788888888877765311111 224777777777777888888888777776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.25 Score=53.48 Aligned_cols=347 Identities=12% Similarity=-0.025 Sum_probs=177.9
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIK--ISRQFQKFRMMEDAV 321 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~ 321 (639)
+....|+.-|+...+. -+.|...|..+..+|.++|++..|.++|++..... |+ .+|.. ....-+..|.+++|+
T Consensus 576 ~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhHHHHH
Confidence 4555677777766421 13378889999999999999999999998877653 32 22222 222345667777777
Q ss_pred HHHHHhhcCC-----CCCC-HHHHHHHHHH---------------------HhhcCCC---c------hhHHHHHHHHHH
Q 037477 322 KLFEFMMDGP-----YKPS-VQDCSLLLRS---------------------ISSINNP---D------LGLVFRVANKYE 365 (639)
Q Consensus 322 ~l~~~m~~~g-----~~p~-~~~~~~ll~~---------------------~~~~~~~---~------~~~~~~~~~~~~ 365 (639)
..+......- .+.+ ..++-.+... ++...+. + .+.+-..+-...
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 7666553210 0000 0111000000 0000000 0 011122222222
Q ss_pred hcCCCCChhhHHHHHHHHHccCCh---h---HHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cC----CHHHHHHHH
Q 037477 366 SLGNSLSKSVYDGIHRALTKLGRF---D---EAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AG----RFEDACNVL 431 (639)
Q Consensus 366 ~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~ 431 (639)
...|+......+..-.-+.+.. + -+.+.+-.-.+. ..+..+|..+...|.+ .| +...|+..+
T Consensus 731 --~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 731 --PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred --ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 2244444444444434444333 1 122222211111 1223444444433332 11 234566777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC
Q 037477 432 DEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR 511 (639)
Q Consensus 432 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (639)
.+..+... -+..+||.|--. ...|++.-+...|-+-.... +-...+|..+--.+.+..+++.|...|..... +.
T Consensus 807 KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---Ld 880 (1238)
T KOG1127|consen 807 KKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LD 880 (1238)
T ss_pred HHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh---cC
Confidence 76665432 266677766444 55577777777665555443 33556676666667788888888888877653 34
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChHhHHHHH---hhcC----------CHHHHHHHHHHhh
Q 037477 512 P-WQATFKTLIEKLLGARRLEEAMNLLRLMKK----QNYPPFPEPFVQYI---SKFG----------TVEDASEFLKALS 573 (639)
Q Consensus 512 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~ll---~~~g----------~~~~a~~~~~~~~ 573 (639)
| +...|..........|+.-++..+|..--+ .|-.|+..-+.... ...| +...|.-.++...
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 4 355566665556667777777777766221 22233322221111 1223 3333444455555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 574 VKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 574 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
...|.....|.+.....-+.+.+++|.++..+
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777766665544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.003 Score=55.74 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----------------ChhHHHH
Q 037477 441 PDIKTWTILIQGHCA-----ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK----------------RVNGAYK 499 (639)
Q Consensus 441 p~~~t~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~~ 499 (639)
.|..+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 477888888888775 4788888999999999999999999999999887632 2234555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
++++|... |+.||..++..+++.+++.+.
T Consensus 125 lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 55555443 566666666666555555443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00043 Score=50.20 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=55.3
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 558 KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 558 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
+.|++++|.+.|+++....|.+...+..++.+|.+.|++++|.+++++.......++.+..+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999776666666666543
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0037 Score=48.37 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=45.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.|+...+.... +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 4444555556666666665555442 222344445555555555555555555555543321 22344555555555555
Q ss_pred HHHHHHHHHHHH
Q 037477 459 VDRALLCFAKMM 470 (639)
Q Consensus 459 ~~~a~~~~~~m~ 470 (639)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.061 Score=51.89 Aligned_cols=213 Identities=12% Similarity=0.084 Sum_probs=113.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
|......|-..|++++|.+.|....+.....+ ...|.....+|.+. ++++|.. .|...+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~---------------~~~~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE---------------CYEKAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH---------------HHHHHH
Confidence 45566667777777777777766542211000 01111111222111 3333332 333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ-KRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLL 525 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~ 525 (639)
..|...|++..|-+++.++ ...|... |++++|++.|++..+-+...-. ..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 5556666666665555443 3345555 7788888877766543211112 345566777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-----hH--hHHHHHh--hcCCHHHHHHHHHHhhcCCC---CC--HHHHHHHHHHHH
Q 037477 526 GARRLEEAMNLLRLMKKQNYPPF-----PE--PFVQYIS--KFGTVEDASEFLKALSVKEY---PS--SAAYLQVFESFF 591 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~-----~~--~~~~ll~--~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~l~~~~~ 591 (639)
+.|++++|.++|++......... .. .+..+++ ..|+...|...++......| .+ ......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88999999999988876433221 11 1233333 45888889999988876632 22 334556777775
Q ss_pred h--cCCHHHHHHHHhhCCccccCChhHHHhhhc
Q 037477 592 N--EGRHYEAKDLLYKCPHHIRQDSKISLLFGS 622 (639)
Q Consensus 592 ~--~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~ 622 (639)
. ...+++|+.-|+.+. +-++|.+.++-.
T Consensus 247 ~~D~e~f~~av~~~d~~~---~ld~w~~~~l~~ 276 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS---RLDNWKTKMLLK 276 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS------HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcccC---ccHHHHHHHHHH
Confidence 4 346777777777763 457777766543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=47.84 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPD----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI--PDIKTWTILIQ 451 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~ 451 (639)
.....+.+.|++++|.+.|..+.+.. |+ ...+..+...+.+.|++++|...|+.+...... .....+..+..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555555555555555555432 11 223344555555555555555555555443211 01233444445
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 037477 452 GHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~ 472 (639)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0057 Score=47.26 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444555556666666666655543211 22444555555555555555555555555443 22233444445555555
Q ss_pred CChhHHHHHHHHHH
Q 037477 492 KRVNGAYKLLVEMI 505 (639)
Q Consensus 492 g~~~~A~~~~~~m~ 505 (639)
|++++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0039 Score=59.83 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING-FLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998643 2234444444444 3335667779999999888744 35667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHH---hhcCCHHHHHHHHHHhhcCCCC
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPFP---EPFVQYI---SKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
.+.+.|+.+.|..+|++.... +.++. ..|..++ .++|+++....+.+++.+..+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888999999999999998865 33322 2344443 6788999888888888876544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.02 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~ 435 (639)
+...+.+.|++++|...|.++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.2 Score=46.93 Aligned_cols=58 Identities=5% Similarity=-0.078 Sum_probs=42.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhcC
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMDIDTY---IKISRQFQKFRMMEDAVKLFEFMMDG 330 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (639)
....+.+.|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 444566789999999999999876322 22222 34567788899999999999988775
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.27 Score=46.50 Aligned_cols=308 Identities=12% Similarity=0.064 Sum_probs=177.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHH---HHhccCChHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCchh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLR---NLVNKDSLKQFWVTLRRMKEDHCYIEEETYLS-ILGVLKKAKKAS 181 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~-ll~~~~~~~~~~ 181 (639)
.+.+.+|+.-|..+.+ .|+..|-++-+ .|.-.|+...|+.=+....+. +||-..-.. --..+.+.|.++
T Consensus 51 ~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 4788888888888877 67777776654 566677777787777777664 466432211 112245666555
Q ss_pred hHHHHHHHHHHHhhhccchh----HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHh-ccChHHHHHHHHHH
Q 037477 182 DLAALNQFHDGMVKEIAMDN----VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKEL-RIYPVKALGFFRWV 256 (639)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~A~~~f~~~ 256 (639)
.+ ..-|+.+++.+.... +.+.+.-+ .-.+..+..+.... .|+...|+.+...+
T Consensus 124 ~A---~~DF~~vl~~~~s~~~~~eaqskl~~~-------------------~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 124 QA---EADFDQVLQHEPSNGLVLEAQSKLALI-------------------QEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HH---HHHHHHHHhcCCCcchhHHHHHHHHhH-------------------HHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 54 344555555443222 22211111 01122222222211 46667777777777
Q ss_pred hccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 257 GEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 257 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
.+-. +-|...|..-..+|...|++..|+.=+....+.. ..+..++-.+-..+...|+.+.++...++.++. .||.
T Consensus 182 lEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 182 LEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 5322 3377788888889999999988877666665543 335666777777888889999998888887763 4554
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhH---HH
Q 037477 337 QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITY---SQ 413 (639)
Q Consensus 337 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~ 413 (639)
..+-..-+-+- .+.+.+.. +......+++.++.+-.+...+.......+.| ..
T Consensus 257 K~Cf~~YKklk--------Kv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 257 KLCFPFYKKLK--------KVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhHHHHHHHHH--------HHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 33222211111 11111111 12234556666666666666555322122223 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
+-.++...|++.+|++.-.+..+- .|| +.++---..+|.-...++.|+.-|+...+.+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 445556677777777777776653 233 5666666667777777777777777766653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.05 Score=45.92 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=43.1
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
.+...|++++|.++|+.+.... +-+..-|-.|.-+|-..|++++|+..|.......+. |...+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 223333444444455555555555555555544432 44444445555555555555
Q ss_pred HHHHHHHHHH
Q 037477 462 ALLCFAKMME 471 (639)
Q Consensus 462 a~~~~~~m~~ 471 (639)
|.+.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0016 Score=49.57 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=8.5
Q ss_pred HHHHHHcCCChhHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~ 503 (639)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.37 Score=46.89 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcC
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFG 560 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g 560 (639)
.+..|.-+...|....|.++-.+ +.+ |+..-|...+.+++..|+|++-.++.+. ...+.....|...+.+.|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCC
Confidence 34445555666766666555443 333 6777777777777777777776655432 223344556666666777
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 561 TVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 561 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+..+|..+..++. +..-+..|.+.|+|.+|.+.-.+
T Consensus 252 ~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 252 NKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777766622 13456667777777777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.15 Score=43.87 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC--CCCCCHHHH
Q 037477 440 IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV--RLRPWQATF 517 (639)
Q Consensus 440 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~~~~ 517 (639)
.|++..--.|..+....|+..+|...|++....-+.-|....-.+.++....++...|...++.+.+-. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 467777777888888888888888888887775556677777777788888888888888888776642 22344 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 037477 518 KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP---EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYL 584 (639)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 584 (639)
..+.+.|...|+..+|...|+.... ..|+. .-|..++.+.|+.+++..-+..+.+....+..+|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 5666778888888888888888776 33443 24566777888777776555444443333344443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.022 Score=56.89 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=60.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV 459 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 459 (639)
...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 345556677777777777776654 334556666667777777777777777777665422 455666666777777777
Q ss_pred HHHHHHHHHHHHc
Q 037477 460 DRALLCFAKMMEK 472 (639)
Q Consensus 460 ~~a~~~~~~m~~~ 472 (639)
++|...|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.058 Score=47.61 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444444555555555555555543322111 2344455555555555555555555555432 11233333444444
Q ss_pred HcCCC
Q 037477 489 LSQKR 493 (639)
Q Consensus 489 ~~~g~ 493 (639)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.1 Score=50.30 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=12.0
Q ss_pred HHHHHcCCChhHHHHHHHHHH
Q 037477 273 LRVLARHESVRDFWNVVEEMK 293 (639)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~ 293 (639)
...|-..|++++|.+.|....
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHH
Confidence 345666667777766666543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.13 Score=48.04 Aligned_cols=176 Identities=10% Similarity=0.096 Sum_probs=100.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKT--WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS- 490 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 490 (639)
....+...|++++|.+.|+++...-..+.... .-.+..++.+.+++++|...+++.++....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33444567788888888887776543321111 123556667778888888888877775322222233333333321
Q ss_pred -CC---------------C---hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 491 -QK---------------R---VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 491 -~g---------------~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
.+ + ..+|+..|+++.+++ |+ ..-..+|...+..+... +.-....
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~-la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDR-LAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHH-HHHHHHH
Confidence 10 1 234555566655542 33 22234444433333221 0011122
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 552 FVQYISKFGTVEDASEFLKALSVKEY---PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 552 ~~~ll~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
...++-+.|.+..|..-++.+.+..| ...+....++.+|...|..++|.+.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34445677888889999999988743 45566778889999999999998877654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0032 Score=47.88 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 421 AGRFEDACNVLDEMEENGCI-PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57788888888888776432 2344555578888888888888888877 33221 123444455677888888888888
Q ss_pred HHHH
Q 037477 500 LLVE 503 (639)
Q Consensus 500 ~~~~ 503 (639)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.058 Score=47.60 Aligned_cols=91 Identities=11% Similarity=-0.019 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34567777888899999999999999986543332 357888899999999999999999999875432 466677777
Q ss_pred HHHHHcCCHHHHHH
Q 037477 451 QGHCAANEVDRALL 464 (639)
Q Consensus 451 ~~~~~~g~~~~a~~ 464 (639)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 78888777655443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.015 Score=47.62 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037477 473 NYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLL 525 (639)
Q Consensus 473 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 525 (639)
...|+..+..+++.+|+..|++..|+++.+...+.+++.-+..+|..|++-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888887777788888776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.092 Score=44.35 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
.+..-+...|++++|..+|+-+...... +..-|-.|.-+|-..|++++|++.|......+ +-|...+-.+-.++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3445566889999999999998876543 56677788888889999999999999999877 357777888888999999
Q ss_pred ChhHHHHHHHHHHHhCCCCC
Q 037477 493 RVNGAYKLLVEMIEKVRLRP 512 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p 512 (639)
+.+.|.+.|+......+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 99999999998877654444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0029 Score=45.25 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=46.1
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
..+...|++++|...|+.+.+..|.+...+..+..++.+.|++++|...+++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678899999999999999988899999999999999999999999998863
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.036 Score=55.32 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=37.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
..|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 444444444444444443322 33344444444444445544444444444432 1233344444444444445554544
Q ss_pred HHHHHH
Q 037477 500 LLVEMI 505 (639)
Q Consensus 500 ~~~~m~ 505 (639)
.|+...
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.1 Score=54.57 Aligned_cols=141 Identities=9% Similarity=0.053 Sum_probs=91.5
Q ss_pred CCCCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 037477 404 FEPDNITYSQVIFGLCKAG-----RFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAA--------NEVDRALLCFAKM 469 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~--------g~~~~a~~~~~~m 469 (639)
.+.+...|...+.+..... ..++|..+|++..+.. |+ ...|..+..++... ++...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3567778888877754432 3668888888888754 44 34444443333322 1223344444443
Q ss_pred HHc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037477 470 MEK-NYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 470 ~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
... ....+...|.++.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 332 22345566777766666778999999999988764 46777888888888999999999999988876 4455
Q ss_pred hHh
Q 037477 549 PEP 551 (639)
Q Consensus 549 ~~~ 551 (639)
..+
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0098 Score=55.07 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCH
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTV 562 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~ 562 (639)
..+.+++.+|+..|.+..+- .|+ .+.|..-..+|++.|.++.|++-.+..+. +.|... ++...+...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 44556666666666666542 332 33444445566666666666665555443 223211 122223455666
Q ss_pred HHHHHHHHHhhcCCCCCH
Q 037477 563 EDASEFLKALSVKEYPSS 580 (639)
Q Consensus 563 ~~a~~~~~~~~~~~~~~~ 580 (639)
++|++.|++..+..|.+.
T Consensus 166 ~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhhhccCCCcH
Confidence 666666666666555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.057 Score=47.44 Aligned_cols=94 Identities=16% Similarity=0.038 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP--DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
...|..+...+...|++++|...|++.......+ ...+|..+...+...|+.++|.+.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445566666667777777777777776543222 22466677777777777777777777776642 22334455555
Q ss_pred HHHH-------cCCChhHHHHHHH
Q 037477 486 NGFL-------SQKRVNGAYKLLV 502 (639)
Q Consensus 486 ~~~~-------~~g~~~~A~~~~~ 502 (639)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5556554444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0083 Score=43.31 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=45.3
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 277 ARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
.+.|++++|.++|+.+.... +-+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45788888888888887764 337777778888888888888888888888765 4554444433
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.22 Score=45.37 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
....+.++.++.-.|.+.-...++++..+..-+-++.....+++.-.+.||.+.|...|++..+..-+.|..+.+.++
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V-- 254 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV-- 254 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH--
Confidence 345677888888889999999999999998767788889999999999999999999999876543333333222222
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.......|.-.+++..|...+.+..... +.|+...|.-.-+..-.|+..
T Consensus 255 ------------------------------~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 255 ------------------------------LMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred ------------------------------HhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHH
Confidence 2223344556677777888887776554 334555554444445578888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+|.+.++.|.+.- |...+-+
T Consensus 304 DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 304 DALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred HHHHHHHHHhccC--Cccchhh
Confidence 8888888888754 4444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.057 Score=47.46 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
...+..+...+...|++++|...|+........+ ...+|..+...|...|++++|+..+++...... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3456677778888999999999999997663222 235788889999999999999999999887532 2345666666
Q ss_pred HHHH-------HcCCHHHHHHHHHHH
Q 037477 451 QGHC-------AANEVDRALLCFAKM 469 (639)
Q Consensus 451 ~~~~-------~~g~~~~a~~~~~~m 469 (639)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 666766555555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.029 Score=52.29 Aligned_cols=108 Identities=14% Similarity=0.028 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChH-hHHHHH-h--hcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 037477 513 WQATFKTLIEKLLGARRLEEAMNLLRLMKK-QNYPPFPE-PFVQYI-S--KFGTVEDASEFLKALSVKEYPSSAAYLQVF 587 (639)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~-~~~~ll-~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 587 (639)
|...|-.|-..|...|+...|..-|.+..+ .|-.|+.. -+...+ . ......++..+|+++...++.+..+...|.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 455666677777777777777777766665 22222221 111111 1 223445677788888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHhhCCc-cccCChhHHHhh
Q 037477 588 ESFFNEGRHYEAKDLLYKCPH-HIRQDSKISLLF 620 (639)
Q Consensus 588 ~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~l~ 620 (639)
..+...|++.+|...|+.|.+ .+..+++...+-
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 888888888888888888743 345555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.041 Score=44.61 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hH---hHH-HH
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF---PE---PFV-QY 555 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~---~~~-~l 555 (639)
-.++-..|+.++|..+|++.... |+... ...+-.+-..+...|++++|..+++...... |+ .. .|. ..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34566677777777777777765 55443 2344455566777777777777777766532 22 11 121 22
Q ss_pred HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 556 ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 556 l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
+...|+.++|...+-..... +...|..-+..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la~---~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE---TLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 24567777777765444332 2224444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.23 Score=40.36 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD----ADLLDVLINGFL 489 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~ 489 (639)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344445666666666666555554322 1233444455556666666666666555431 21 111111222445
Q ss_pred cCCChhHHHHHHHHH
Q 037477 490 SQKRVNGAYKLLVEM 504 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m 504 (639)
..|+.++|+..+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.23 Score=52.10 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=98.6
Q ss_pred cCCCCChhhHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC--------CHHHHHHHHH
Q 037477 367 LGNSLSKSVYDGIHRALTKL-----GRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKAG--------RFEDACNVLD 432 (639)
Q Consensus 367 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~~ 432 (639)
...+.+...|...+++.... ++.+.|..+|++..+. .|+ ...|..+..++.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34455667788777765443 2367899999999887 455 445554444443221 2334444444
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC
Q 037477 433 EMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR 511 (639)
Q Consensus 433 ~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (639)
+.... ....+...|..+.-.+...|++++|...+++.++.+ |+...|..+...|...|+.++|...+++.... .
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L---~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL---R 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C
Confidence 43332 122355778777777778899999999999999885 57889999999999999999999999988754 4
Q ss_pred CCHHHH
Q 037477 512 PWQATF 517 (639)
Q Consensus 512 p~~~~~ 517 (639)
|...+|
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.1 Score=44.47 Aligned_cols=337 Identities=12% Similarity=0.118 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcC--------C-------HHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEG----YEMDIDTYIKISRQFQKFR--------M-------MEDAVKLFE 325 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g--------~-------~~~a~~l~~ 325 (639)
|..-=+..+..+.+.|++.+++.++++|..+= +.-+..+|+.++-.+.+.= . ++-+.-...
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 33444666777778888888888777776542 3357777777554443321 1 122222222
Q ss_pred Hhhc------CCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhHHHHHHHH
Q 037477 326 FMMD------GPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKS-VYDGIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 326 ~m~~------~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 398 (639)
+|.. ..+.|.......++....-.......-..++...++..-..|+.. +...++..+.+ +.+++..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 2221 135566666667776666555555666777788887777777643 44555555555 56666665555
Q ss_pred HHHCCCC----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHHHHH
Q 037477 399 MKNAGFE----PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT-------ILIQGHCA----ANEVDRAL 463 (639)
Q Consensus 399 m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-------~li~~~~~----~g~~~~a~ 463 (639)
+....+. .-..++..++...++.++..+|-+.+.-+.... |+...-. .+-+..|. .-+..+=+
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL 362 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYL 362 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHH
Confidence 5433211 123567888889999999999999888776543 3332111 11122221 11223334
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH---HHHcCCC-hhHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHH
Q 037477 464 LCFAKMMEKNYDADADLLDVLIN---GFLSQKR-VNGAYKLLVEMIEKVRLRPWQATFKTLI----EKLLG---ARRLEE 532 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li----~~~~~---~g~~~~ 532 (639)
.+|+.....++.- ......|+. -+-+.|. -++|+.+++.+.+- ..-|...-|.+. .+|.+ ...+.+
T Consensus 363 ~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 363 NLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5555555544321 122223332 3455565 78899999988763 122333333222 23332 223444
Q ss_pred HHHHHHHHHhCCCCCChHh---HHHH------HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 533 AMNLLRLMKKQNYPPFPEP---FVQY------ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~---~~~l------l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
-..+-+-+.+.|+.|-... .... +-..|++.++.-+-.-+.+ ..|++.+|..+.-.+....++++|.+++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-iaPS~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-IAPSPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555566788775432 2222 3467999988877555554 4569999999999999999999999999
Q ss_pred hhCCcc
Q 037477 604 YKCPHH 609 (639)
Q Consensus 604 ~~m~~~ 609 (639)
.+.|.+
T Consensus 519 ~~LP~n 524 (549)
T PF07079_consen 519 QKLPPN 524 (549)
T ss_pred HhCCCc
Confidence 999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.073 Score=43.67 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKK---------------EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
|..++.++|.++++.|+++...++++..-. ....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567889999999999999999999876422 12568899999999999999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHHHhhc
Q 037477 330 G-PYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 330 ~-g~~p~~~~~~~ll~~~~~~ 349 (639)
. +++.+..+|..|+.-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 4 6777777887777655433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.056 Score=50.23 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=66.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNG 496 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (639)
-..+.+++.+|+..|.+.++.... |.+-|..=..+|++.|.++.|.+=.+..+..+ +--..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 355677888888888877775433 56666667777788888777777666666543 2234567777777777778887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 037477 497 AYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 497 A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
|.+.|+... .+.|+-.+|-.
T Consensus 168 A~~aykKaL---eldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKAL---ELDPDNESYKS 187 (304)
T ss_pred HHHHHHhhh---ccCCCcHHHHH
Confidence 777777665 35666555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.2 Score=43.35 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 370 SLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 370 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
.|+...|-..+.+|+..++|++-.++-.. +.+++.|-..+.+|.+.|...+|..+... .++..-
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~r 268 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPK----------IPDEER 268 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHh----------CChHHH
Confidence 46666777788888888888877665432 23457788888888888888888877665 112456
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 037477 450 IQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~ 468 (639)
+..|.++|++.+|.+.-.+
T Consensus 269 v~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 269 VEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 6777888888887665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.029 Score=39.94 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKM 469 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m 469 (639)
.+..+..++...|++++|...|+++
T Consensus 33 a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 33 AWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333344444444333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.12 Score=52.86 Aligned_cols=265 Identities=12% Similarity=0.104 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
.|....+.+-+..|...|.+++|.++--- |+.- ..|..|.. ..+ +...++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iacl----gVv~--~DW~~LA~--------------~AL----------eAL~f~ 602 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACL----GVTD--TDWRELAM--------------EAL----------EALDFE 602 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccccc----ceec--chHHHHHH--------------HHH----------hhhhhH
Confidence 34455566677788899999988764321 2111 12222211 111 111245
Q ss_pred HHHHHHHccCCh--hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HH
Q 037477 378 GIHRALTKLGRF--DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI-----LI 450 (639)
Q Consensus 378 ~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-----li 450 (639)
..=.+|.+..+. -+...-+++|+++|-.|+... +...|+-.|++.+|-++|.+--..+-. ...|+- ..
T Consensus 603 ~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 603 TARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYA 677 (1081)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHH
Confidence 555677766654 345556778888887787643 334566678888888887653321110 111111 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--cCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHH---------HHHhCCCCCCHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMME--KNY-DADADLLDVLINGFLSQKRVNGAYKLLVE---------MIEKVRLRPWQATFK 518 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~--~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~~~~~p~~~~~~ 518 (639)
+-|...|..++-..+.++--+ .++ +|. +...++...|+.++|..+.-+ +-.+ --..+..+..
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld~~ere~l~ 751 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LDKAEREPLL 751 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cchhhhhHHH
Confidence 334445554444333332222 111 221 223344556666666554321 1111 0112344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCC----------HHHHHHHHH
Q 037477 519 TLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPS----------SAAYLQVFE 588 (639)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~l~~ 588 (639)
.+...+-+...+.-|-++|.+|-+ ......+-...+++++|..+-++..+..+.- ..-+.-.-.
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 555555566777888889888843 4455555567799999999888776652211 112344557
Q ss_pred HHHhcCCHHHHHHHHhhCCcc
Q 037477 589 SFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 589 ~~~~~g~~~~A~~~~~~m~~~ 609 (639)
+|.++|+-.||.+++++...+
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 888999999999999986544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.15 Score=43.52 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH----hCCCCCCHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE----KVRLRPWQA 515 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~ 515 (639)
...++..+...|+++.|..+...+.... +.|...|..+|.+|...|+..+|.+.|+.+.+ ..|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3444455555666666666666665553 33555666666666666666666666555432 235555533
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.79 Score=42.07 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=48.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHH
Q 037477 552 FVQYISKFGTVEDASEFLKALSVKEYP---SSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKIS 617 (639)
Q Consensus 552 ~~~ll~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 617 (639)
...++.+.|....|..-++.|.+..+. ..+.+-.+..+|.+.|-.++|.+.-+-+..+..+.+|..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~ 241 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYK 241 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchh
Confidence 344556778888888888888887433 344566778889999999999888777777766666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.19 Score=47.40 Aligned_cols=98 Identities=16% Similarity=0.060 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNY--DADADLLDVLI 485 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li 485 (639)
.|...+..+.+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.+.-. ......+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444455666666666666655432110 13444455555555666666666555554310 11122233334
Q ss_pred HHHHcCCChhHHHHHHHHHHHh
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..+...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555555555555555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=41.76 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHH
Q 037477 555 YISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISL 618 (639)
Q Consensus 555 ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 618 (639)
++.+.+++++|.++++.+....|.++..|.....+|.+.|++++|.+.+++.....+.++....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3456677777777777777777777777777777788888888887777776544444444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.9 Score=42.76 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh----HH
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP----FV 553 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~ 553 (639)
..+|...++...+..-++.|..+|-+..+..-+.+++..++++|..++. |+..-|..+|+.-.. .-||... |.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 3456666776666667777777777776652256777777777775554 666777777765443 2244333 33
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYP--SSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
.++...++-+.|..+|+.-..+... -...|..++.--..-|+...|..+=++|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 4445667777777777755544222 35667777777777777777666655553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.045 Score=39.54 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK-RVNGAYKLLVE 503 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 503 (639)
+|..+...+...|++++|+..|++.++.. +-+...|..+-.+|...| ++++|++.|+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33333344444444444444444444332 112333333333344444 34444444433
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.052 Score=39.17 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN-EVDRALLCFAKMME 471 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~ 471 (639)
...|..+...+...|++++|+..|.+..+.... +...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555566666666666666665554322 4445555555566665 46666666655544
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.4 Score=40.04 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEK 523 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~ 523 (639)
.+..+|.-|=......+|...+..+.+.= ..---.+..-|.+.|.+..|..-++.+.+.+.-.+. ......++.+
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 34445555555556666666555554320 011123456788999999999999999887533222 3455677888
Q ss_pred HHhcCCHHHHH
Q 037477 524 LLGARRLEEAM 534 (639)
Q Consensus 524 ~~~~g~~~~A~ 534 (639)
|.+.|..+.+.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 88888877443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.53 Score=42.75 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 037477 553 VQYISKFGTVEDASEFLKALSVKEYPSSA---AYLQVFESFFNEGRHYEAK 600 (639)
Q Consensus 553 ~~ll~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 600 (639)
..++-+.|.+..|..-++.+.+..|.+.. ....++.+|.+.|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 34456778888888888888887655544 4567788888888877543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.26 Score=46.51 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEENGCI--PDIKTWTIL 449 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~l 449 (639)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.-.. .....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444444456666666666666554 2322 24445555566666666666666666543211 112333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 037477 450 IQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
...+...|+.++|..+|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555566666666666665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.5 Score=41.81 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=52.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAG---FEPDNITYSQVIFGLCK---AGRFEDACNVLDEMEENGCIPDIKTWTI 448 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 448 (639)
+.-.++-+|....+++...++.+.|...- +.-....--....++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34445556888888888889988887641 11112222234455556 7888999999888665555677778877
Q ss_pred HHHHHH
Q 037477 449 LIQGHC 454 (639)
Q Consensus 449 li~~~~ 454 (639)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 766553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.23 Score=45.72 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHhc-----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037477 127 PSSTVYSLMLRNLVN-----KDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKA 177 (639)
Q Consensus 127 ~~~~~~~~li~~~~~-----~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~ 177 (639)
.|-.+|-+++..+.. .+.++-....++.|++-|+.-|..+|..||..+-+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 566677777766653 456666777889999999999999999999887654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.38 Score=44.32 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=62.3
Q ss_pred CCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Q 037477 405 EPDNITYSQVIFGLCK-----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN----------------EVDRAL 463 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g----------------~~~~a~ 463 (639)
+.|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.||..+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4456666666666543 3556666666777777777778888887777765432 123456
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHH
Q 037477 464 LCFAKMMEKNYDADADLLDVLINGFLSQKRV-NGAYKLLVEMIE 506 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 506 (639)
+++++|...|+.||..+-..|++++++.+-. .+..++.-.|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 6666666666666666666666666665542 334444444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.43 E-value=1 Score=38.05 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 447 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
..++..+...+.......+++.+...+ ..+...++.++..|++... .+....+.. . .+......+++.|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c----cccCCHHHHHHHHHH
Confidence 345555555566666666666666655 2455666666666665432 333333331 1 122223446666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 037477 527 ARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN 592 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (639)
.+.++++.-++.++.. ....+..++...++.+.|.+++++- .+++.|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC-----CCHHHHHHHHHHHHc
Confidence 7777777777766532 1223333444447788888877652 266777777766653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.13 Score=43.88 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADL 480 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 480 (639)
...++..+...|++++|..+...+.....- |...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555566666666666666554322 455666666666666666666666655533 355555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=4.6 Score=42.86 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=72.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
..-+.+.-+.-+...|+-.+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-+.+.. ..-|.-.+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 334455566666777777777777666553 6777777777777777777766555444332 233555667
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
+|.+.|+.++|.+++-.... . .-.+.+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~------l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG------L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCC------h----HHHHHHHHHhccHHHHHHHHH
Confidence 77888888888777754421 1 145667777777777776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.097 Score=38.88 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHh---CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEK---VRL-RPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
+++.+...|...|++++|+..|++..+. .|- .|+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555544322 110 111 3344555555555555555555555443
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.4 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY 474 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 474 (639)
...++.+.+.|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444444555555555555554431 124444445555555555555555555555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.2 Score=41.78 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=44.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN---EVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
-|...|-.|...|...|+++.|..-|....+... ++...+..+..++.... ...++.++|++++... .-|.....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 3445555555555555555555555555444321 23333333333332221 2334445555555442 22333333
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHH
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
-|-..+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 333444555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=2 Score=37.21 Aligned_cols=126 Identities=20% Similarity=0.137 Sum_probs=86.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN---YDADADLL 481 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~ 481 (639)
-|++..--.|..+....|+..+|...|++...--..-|....-.+.++....++.-.|...++.+.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 466666667788888888888888888888765455577777778888888888888888888887743 33443 3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
-.+...|...|++.+|..-|+....- -|+...-...-..+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 35566788888888888888887764 3443322222333556666555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.14 Score=37.45 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHHHH
Q 037477 421 AGRFEDACNVLDEME 435 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~ 435 (639)
.+++++|.++++.+.
T Consensus 8 ~~~~~~A~~~~~~~l 22 (73)
T PF13371_consen 8 QEDYEEALEVLERAL 22 (73)
T ss_pred CCCHHHHHHHHHHHH
Confidence 333333333333333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=5.7 Score=41.77 Aligned_cols=46 Identities=17% Similarity=0.043 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 559 FGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
.|.+++|.+---.+.+- .-|..+.|..|.-+-+....+..--+.|-
T Consensus 1034 eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfm 1081 (1189)
T KOG2041|consen 1034 EGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFM 1081 (1189)
T ss_pred hchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 48888887754444433 45677888877777666555554444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.8 Score=44.98 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037477 304 YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRAL 383 (639)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 383 (639)
+..++....-.|+-+.+++++.+..+.+---.+.. ..+| .+|..++..+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la-~L~L------------------------------L~y~~~~~~~ 239 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA-ALVL------------------------------LWYHLVVPSF 239 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH-HHHH------------------------------HHHHHHHHHH
Confidence 34556666777888888888877655321111111 1111 1233333333
Q ss_pred Hc----cCChhHHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHH
Q 037477 384 TK----LGRFDEAEKMMKAMKNAGFEPDNITYSQV-IFGLCKAGRFEDACNVLDEMEENGC---IPDIKTWTILIQGHCA 455 (639)
Q Consensus 384 ~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~li~~~~~ 455 (639)
+. ..+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++...... +.....+--+.-.+..
T Consensus 240 ~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 240 LGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred cCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 32 45678899999999876 6777666543 3556678999999999987653111 1122233345556777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHcCCCh-------hHHHHHHHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLIN-GFLSQKRV-------NGAYKLLVEMIE 506 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 506 (639)
.+++++|.+.|.++.+.. .....+|.-+.. ++...|+. ++|.++|.+...
T Consensus 318 ~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888888888753 223333333322 34456666 677777776653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.87 E-value=4.5 Score=40.06 Aligned_cols=167 Identities=11% Similarity=0.069 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENG---CIPDIKTWTILIQGHCA---ANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
..++-+|....+++...++.+.|...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 455667999999999999999998741 11122222233445556 899999999999977766678888888776
Q ss_pred HHHHc---------CCChhHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcC-CHHHHHHHH----HHHHhCCCCC-
Q 037477 486 NGFLS---------QKRVNGAYKLLVEMIEKVRLRPWQA---TFKTLIEKLLGAR-RLEEAMNLL----RLMKKQNYPP- 547 (639)
Q Consensus 486 ~~~~~---------~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g-~~~~A~~~~----~~m~~~~~~p- 547 (639)
..|-. ....++|...|.+-- .+.|+.. -+..|+....... .-.+..++- ....+.|...
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65532 123556666666543 3345422 1222222221110 111222222 1122233221
Q ss_pred -----ChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHH
Q 037477 548 -----FPEPFVQYISKFGTVEDASEFLKALSVKEYPSSA 581 (639)
Q Consensus 548 -----~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~ 581 (639)
+..|+..+..-.|+.+.|.+..++|....+|.++
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1223333334556777777777777766655554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.81 E-value=2 Score=37.02 Aligned_cols=31 Identities=3% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 289 VEEMKKEGYEMDIDTYIKISRQFQKFRMMED 319 (639)
Q Consensus 289 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 319 (639)
++.+.+.+++|+...|..++..+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444455566666666666666666665444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.1 Score=38.71 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEK----NY-DAD-ADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
+|+.+...|...|++++|+..|++.++. |- .|+ ..++..+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555555544431 10 011 233444555555555555555555544
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.5 Score=45.55 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHH----cCCChhHHHHHHHHHHHhCCCCCCHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEK-NYDADA-----DLLDVLINGFL----SQKRVNGAYKLLVEMIEKVRLRPWQA 515 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~-----~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~ 515 (639)
+..++....-.||-+.+++.+.+..+. ++.... -.|..++..++ .....+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 344555555556666666666555442 222111 12333333332 245678899999998876 46766
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH------H--hhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 516 TFKTLI-EKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQY------I--SKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 516 ~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------l--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
.|...- +.+...|++++|++.|++.... ......+..+ + ...+++++|...|..+.+....+...|..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 555443 4556689999999999976642 1222222222 1 356899999999999998877777777765
Q ss_pred HHHH-HhcCCH-------HHHHHHHhhCCcc
Q 037477 587 FESF-FNEGRH-------YEAKDLLYKCPHH 609 (639)
Q Consensus 587 ~~~~-~~~g~~-------~~A~~~~~~m~~~ 609 (639)
..++ ...|+. ++|.+++++.|.-
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 5444 467777 8899999887554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=3.3 Score=38.06 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----H
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI-----N 486 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-----~ 486 (639)
+.++..+...|.+.-....+++.++.....++.....+.+.-.+.|+.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44555555667777777777777776655567777777777777788888877777666543344444444333 2
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.|.-++++.+|...|+++....+-.|-..---+++. .-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl--lYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL--LYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 345566777777777777655332222111123332 2346777777777777763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.66 E-value=7.2 Score=41.48 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=156.2
Q ss_pred HCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhc
Q 037477 294 KEGYEMDIDTYIK-----ISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-PDLGLVFRVANKYESL 367 (639)
Q Consensus 294 ~~g~~p~~~~~~~-----li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~ 367 (639)
.-|++.+..-|.. +|+-+...+.+..|+++-..+...-.+- ...|......+.+... .|.+.+..+-.++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3477777766654 5777788889999999888886432222 5566666666655533 3333333333333332
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 037477 368 GNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE----PDNITYSQVIFGLCKAGRFEDACNVLDEMEENG----- 438 (639)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 438 (639)
. .....|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.|.+.-
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 34456777777777788888887776542221100 000112233333344444443333333322110
Q ss_pred -----CCC-----------------------------------------------CHHHHHHHHHHHHHcCCHH---HH-
Q 037477 439 -----CIP-----------------------------------------------DIKTWTILIQGHCAANEVD---RA- 462 (639)
Q Consensus 439 -----~~p-----------------------------------------------~~~t~~~li~~~~~~g~~~---~a- 462 (639)
..| -..........|.+..... +|
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 000 0011111222222222211 11
Q ss_pred ------HHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 463 ------LLCFAKMME-KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 463 ------~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
+.+.+.+.. .|..-..-+.+--+.-+...|...+|.++-.+. . .||-..|..=+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 111111111 121222223334444555667777776665543 2 4677777777888888888888777
Q ss_pred HHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 536 LLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+-+.+.. +.....|...+.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++--+
T Consensus 737 fAkskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh----H----HHHHHHHHhccHHHHHHHHHH
Confidence 6666552 333445777888889999999887766543 1 467788888888888776544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.045 Score=32.88 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=29.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 569 LKALSVKEYPSSAAYLQVFESFFNEGRHYEAKD 601 (639)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 601 (639)
|++..+..|.++.+|..+...|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 566677789999999999999999999999863
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.8 Score=37.92 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777766553 223344555667777777777777777776543222222222222333333333333
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 528 (639)
..++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.++..-.-|...-..+++.+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333221 224455555666666677777766665555544222223334445555554444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.41 Score=40.78 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=48.7
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
+-..|++++|..+|.-+...+ .-+..-|..|..+|-..+++++|...|......+.. |...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 345566666666666666543 223444555555555666666666666655443321 333334455566666666666
Q ss_pred HHHHHHHHH
Q 037477 463 LLCFAKMME 471 (639)
Q Consensus 463 ~~~~~~m~~ 471 (639)
...|...++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.14 E-value=5.7 Score=38.16 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=93.1
Q ss_pred HcCCChhHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 277 ARHESVRDFWNVVEEMKKEG--YEMDI------DTYIKISRQFQKFR-MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+.|+++.|..++.+..... ..|+. ..|+.-... .+.+ ++++|...+++..+. +.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~---------------l~ 67 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDI---------------LE 67 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHH---------------HH
Confidence 46788888888888776542 22321 223333333 3444 788887777765431 00
Q ss_pred hcCCCchhHHHHHHHHHHhcCCC---CChhhHHHHHHHHHccCChh---HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 037477 348 SINNPDLGLVFRVANKYESLGNS---LSKSVYDGIHRALTKLGRFD---EAEKMMKAMKNAGFEPDNITYSQVIFGLCKA 421 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 421 (639)
.. ..+...... .-..++..++.+|...+..+ +|.++++.+.... .-.+..+-.-+..+.+.
T Consensus 68 ~~------------~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~ 134 (278)
T PF08631_consen 68 KP------------GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKS 134 (278)
T ss_pred hh------------hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhcc
Confidence 00 000000000 01134566777887777654 4566666665442 22244555566777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGH---CAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
++.+++.+++.+|...-.. ....+..++..+ ... ....|...+..++...+.|...
T Consensus 135 ~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 135 FDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred CChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 8899999999998875321 234455555544 332 3345666666666655555443
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.06 E-value=6 Score=38.16 Aligned_cols=49 Identities=12% Similarity=0.320 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhcC
Q 037477 282 VRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK--FR----MMEDAVKLFEFMMDG 330 (639)
Q Consensus 282 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~l~~~m~~~ 330 (639)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 45667778888888887777776653333322 22 245677788888765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.04 E-value=11 Score=40.89 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 577 YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
.|....+.-+.+++-+. ..++-.+.+.+.....+.-..++..++
T Consensus 879 ~~e~~~~m~l~~s~~q~-~~~~~~~f~~~~e~s~D~fsvite~fg 922 (933)
T KOG2114|consen 879 LPELRGVMDLKRSQEQK-KTDDFDEFFHQSEGSKDSFSVITEYFG 922 (933)
T ss_pred chhhhhhHHHHHHHHHh-hhhHHHHHHHhhcccCCcceeehhhcc
Confidence 35666778888888776 667777777776533333334444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=6.9 Score=38.28 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHhhCCccccCChhHH
Q 037477 559 FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE-GRHYEAKDLLYKCPHHIRQDSKIS 617 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~ 617 (639)
.|++..|..--+.... ..|....|..|.+.-... |+-.++...+-+-...+..+.|..
T Consensus 342 a~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 342 AGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred ccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 3555555444333322 234555555555555443 666666666666555555555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.90 E-value=14 Score=41.75 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCH
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQ--ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTV 562 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~ 562 (639)
+.+|..+|++.+|+.+-.++... -+. .+-..|+.-+...++.-+|-++..+.. -|..--..++++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~-----sd~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYL-----SDPEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh-----cCHHHHHHHHhhHhHH
Confidence 44555555555555555544221 111 112345555555666666655555543 2233344455555556
Q ss_pred HHHHHHHHH
Q 037477 563 EDASEFLKA 571 (639)
Q Consensus 563 ~~a~~~~~~ 571 (639)
++|......
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666555433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.76 E-value=3.3 Score=44.48 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=124.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL----CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
...-++.+.+...++-|..+-+.- ..|..+...++..| .+.|++++|..-|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 455777888888888888776543 33444555555544 4689999999877765532 122 33566
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
-|........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... . |. ...-....+..|.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~--~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GE--WFFDVETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cc--eeeeHHHHHHHHHHhChHH
Confidence 777777788888889999998864 56666789999999999998888776543 2 22 1222456677788888888
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhh
Q 037477 532 EAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALS 573 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~ 573 (639)
+|.-+-.+... ....+..++...|++++|.++++.+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 88877665542 34556677788899999999987764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.1 Score=43.94 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=79.8
Q ss_pred HHcCCChhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 276 LARHESVRDFWNVVE--EMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 276 ~~~~g~~~~a~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
..-.|+++++.++.+ ++.. .+ +....+.++..+-+.|..+.|+++-.+-..
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------ 323 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------------------ 323 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------------------
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------------------
Confidence 344567777666654 1111 11 244567777777777877777776543211
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDE 433 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (639)
-.....+.|+++.|.++.++. .+...|..|.+...+.|+++-|.+.|.+
T Consensus 324 -------------------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 324 -------------------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp -------------------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred -------------------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 112234556666666654432 3555677777777777777777766665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 434 MEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 434 m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|++++..+++.+
T Consensus 373 ~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 373 AKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp CT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred hcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 443 44555566666666666666655555541 34444444455666665555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.67 E-value=7 Score=37.55 Aligned_cols=218 Identities=17% Similarity=0.199 Sum_probs=125.7
Q ss_pred HccCChhHHHHHHHHHHHCC--CCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCH----
Q 037477 384 TKLGRFDEAEKMMKAMKNAG--FEPDN------ITYSQVIFGLCKAGRFEDACNVLDEMEEN--------GCIPDI---- 443 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~---- 443 (639)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45688888888888776532 22322 23444444444443888777776664322 222333
Q ss_pred -HHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 444 -KTWTILIQGHCAANEVD---RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 444 -~t~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+...++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+.+.+|....+ -....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHH
Confidence 45677788888877655 4555666664432 22245555566777778999999999999998633 12234444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCChHhHH-HH------H-hhc------CCHHHHHHHHHHhhcC--CCCCH
Q 037477 520 LIEKL---LGARRLEEAMNLLRLMKKQNYPPFPEPFV-QY------I-SKF------GTVEDASEFLKALSVK--EYPSS 580 (639)
Q Consensus 520 li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l------l-~~~------g~~~~a~~~~~~~~~~--~~~~~ 580 (639)
++..+ .. .....|...++++....+.|....+. .. + ... .+++....+++.+.+. .+.+.
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44433 43 33467778888777655655543121 11 1 121 1255555566644433 34444
Q ss_pred HHHHHH-------HHHHHhcCCHHHHHHHHhh
Q 037477 581 AAYLQV-------FESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 581 ~~~~~l-------~~~~~~~g~~~~A~~~~~~ 605 (639)
.+-.++ +....+.++|++|.+.++-
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 443333 3445678999999998874
|
It is also involved in sporulation []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.42 E-value=8.7 Score=37.92 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHH------------
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL--CKAGRFEDACNVLDEMEENGCIPDIKTW------------ 446 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~------------ 446 (639)
.++.-.|+.++|.++-....+.. ....+...+++. --.++.+.|...|++....+ |+-..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 46677899999988877776543 112233444433 34678888888888877654 433221
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 037477 447 -TILIQGHCAANEVDRALLCFAKMME---KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLI 521 (639)
Q Consensus 447 -~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li 521 (639)
..=..-..+.|.+..|.+.+.+.+. .+..++...|........+.|+..+|+.--++..+- .|. +..|..-.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---D~syikall~ra 328 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---DSSYIKALLRRA 328 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---CHHHHHHHHHHH
Confidence 1122334578999999999999887 345677777877777888999999998877766532 222 11222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.++...++|++|.+-++...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455578889999988887664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.3 Score=41.03 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCI--PDIKTWTILIQGHCAANEVDRALLCFAKMMEKN-YDA-DADLLDVLIN 486 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~ 486 (639)
|+.-+..| +.|++..|...|....+.... -....+-.|..++...|++++|..+|..+.+.- -.| -...+--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 444555555555555544311 011223335555555555555555555555421 011 1133334444
Q ss_pred HHHcCCChhHHHHHHHHHHHh
Q 037477 487 GFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+..+.|+.++|..+|+++.++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 445555555555555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.17 E-value=4 Score=33.25 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPY 332 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (639)
+....+..++.+.+.|+-|+-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 45566777888999999999999999987643 77888899999999999999999999999888775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.3 Score=37.76 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=54.0
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHhHHHH--HhhcCCHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFPEPFVQY--ISKFGTVE 563 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l--l~~~g~~~ 563 (639)
-+-..|++++|..+|.-+.--... +..-|..|...+-..|++++|+..|......+.. |.+ .|... +...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-VFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-cchHHHHHHHhCCHH
Confidence 345678888888888877653222 2334555556666678888888888776553321 222 23222 24668888
Q ss_pred HHHHHHHHhhcC
Q 037477 564 DASEFLKALSVK 575 (639)
Q Consensus 564 ~a~~~~~~~~~~ 575 (639)
.|+..|....+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888877764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=8.5 Score=36.89 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHhhcCCCCCCHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMM----EDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~~ 338 (639)
.+|....-..+..+...|. +++...+..+... +|...-...+.++++.|+. +++..++..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4466666666677777665 3333334444333 3566666666777777753 4566666665332 345555
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL 418 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 418 (639)
-...+.++...+........+....+...-..++..+-...+.++++.|+. ++...+-.+.+ .+|...-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 555555554433222111111122222222222334444555555555553 34444444333 23333344444444
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 419 CKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 419 ~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
.+.+ +-..+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+. .....+.++...|.. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hH
Confidence 4432 13344444444443 24555555666666666653 34444444443321 123455555665653 45
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKL 524 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~ 524 (639)
...+..+.+. .||...-...+.+|
T Consensus 254 ~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhh---CCChhHHHHHHHHH
Confidence 5555555543 23444444444433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.10 E-value=7.9 Score=36.50 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=57.1
Q ss_pred hcCCHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh-cCCCCChhhHHHHHHHHHccCChh
Q 037477 313 KFRMMEDAVKLFEFMMD-GPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYES-LGNSLSKSVYDGIHRALTKLGRFD 390 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 390 (639)
++..+.+|+++|+.... ..+--|..+...+++......+.......++.+.+.. .+..++..+...++..++..+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34456777888874332 2355566666666666655332233333333333322 223444444555555555555555
Q ss_pred HHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 037477 391 EAEKMMKAMKNA-GFEPDNITYSQVIFGLCKAGRFEDAC 428 (639)
Q Consensus 391 ~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 428 (639)
+-.++++.-... +...|...|..+|+.....|+..-..
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 555555544333 33334445555555555555544333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.98 E-value=4 Score=35.27 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.++++.+.+.|+.|+...+..+++.+.+.|++..-..++. +++-+|.....+.+-.+.. ....+.++=-.|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 3445555556666666677777777777666554444332 2555555444444433322 22222222222222
Q ss_pred CCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcC
Q 037477 543 QNYPPFPEPFVQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 543 ~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
+ +.........++-..|++-+|.++.++....
T Consensus 87 R-L~~~~~~iievLL~~g~vl~ALr~ar~~~~~ 118 (167)
T PF07035_consen 87 R-LGTAYEEIIEVLLSKGQVLEALRYARQYHKV 118 (167)
T ss_pred H-hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 1 1112233444555666666666666655333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.5 Score=40.66 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC---CChH-hHH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQN-YP---PFPE-PFV 553 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~---p~~~-~~~ 553 (639)
.|+.-+..| +.|++.+|...|....+.+.-.+ ....+--|.+++...|++++|..+|..+.+.- -. ||.. -+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 34556666666666666532110 12244445566666666666666666665421 11 1111 111
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
..+...|+.++|...|+++.+..|.+..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 12245566666666666666665554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.87 E-value=4.9 Score=38.78 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC----CCHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME-KNYDAD---ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR----PWQAT 516 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~ 516 (639)
.|..+.+++.+..++.+++.+-+.-.. .|..|. .....++-.++...+.++++++.|+...+-..-. .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554433332 122221 1222334455555666777777777655421111 12346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--CCCC-CCh-HhHH--------HHHhhcCCHHHHHHHHHHhhcC--CCCCHH-
Q 037477 517 FKTLIEKLLGARRLEEAMNLLRLMKK--QNYP-PFP-EPFV--------QYISKFGTVEDASEFLKALSVK--EYPSSA- 581 (639)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~-p~~-~~~~--------~ll~~~g~~~~a~~~~~~~~~~--~~~~~~- 581 (639)
|-.+-..|.+..++++|.-+..+..+ ..+. .|+ .-|. ..+...|.+.+|.+..++..+. ..-|..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66777777777787777776665543 1122 111 1121 1224667777777777766544 222333
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhh----CCccccCChhHHHhhhcc
Q 037477 582 ---AYLQVFESFFNEGRHYEAKDLLYK----CPHHIRQDSKISLLFGSA 623 (639)
Q Consensus 582 ---~~~~l~~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~l~~~~ 623 (639)
...++.+.|...|+.|.|+.-++. |..-+++...+..+.+.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344677888888888888776665 444445544555444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.86 E-value=5.1 Score=33.67 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037477 270 NGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKF 314 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 314 (639)
..++..+...+........++.+...+ ..+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555555555555555555554 24455555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.85 E-value=2.4 Score=41.66 Aligned_cols=91 Identities=13% Similarity=0.033 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH--HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 037477 516 TFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF--VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE 593 (639)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (639)
+++.+.-+|.+.+++.+|++.-++.++.+-...-.-| ...+...|+++.|+..|+++.+..|.|..+-..|+..--+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 6677777888999999999988888774322111223 33445779999999999999999998988888888877776
Q ss_pred CCHHHH-HHHHhhC
Q 037477 594 GRHYEA-KDLLYKC 606 (639)
Q Consensus 594 g~~~~A-~~~~~~m 606 (639)
.++++. .++|..|
T Consensus 339 ~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 339 REYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 665554 6777776
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.84 E-value=9.6 Score=36.79 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhc--cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHhhhccc----
Q 037477 129 STVYSLMLRNLVN--KDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK---AKKASDLAALNQFHDGMVKEIAM---- 199 (639)
Q Consensus 129 ~~~~~~li~~~~~--~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---- 199 (639)
..++.+++..... ...+++...+++.|++.|+.-+..+|.+.+-.... ....+.+.....+|+.|.+..+.
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 4455555554444 22355688899999999999888888775555444 22234556777888888876432
Q ss_pred -hhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC-CH-HHHHHHHHHH
Q 037477 200 -DNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH-NT-ITYNGILRVL 276 (639)
Q Consensus 200 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p-~~-~~~~~li~~~ 276 (639)
+.++..++.. ...+.+.. .+....+|+.+. ..|+.. |. .....++..+
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l--------------------------~~~~E~~Y~~L~-~~~f~kgn~LQ~LS~iLaL~ 190 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEEL--------------------------AERMEQCYQKLA-DAGFKKGNDLQFLSHILALS 190 (297)
T ss_pred cchhHHHHHhc--ccccHHHH--------------------------HHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHhc
Confidence 1133333222 11111111 234555666664 345555 22 3344444333
Q ss_pred HcCCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 277 ARHES--VRDFWNVVEEMKKEGYEMDIDTYIKISRQ 310 (639)
Q Consensus 277 ~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 310 (639)
..... +..+.++++.+.+.|+++....|..+.-.
T Consensus 191 ~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 191 EGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred cccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 32222 34778888888888888877777665433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=9.4 Score=38.57 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456777777777777777777777776665 3442 34677777777777777777777777764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.70 E-value=12 Score=37.46 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENG-CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLING 487 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~ 487 (639)
.|...|+...+..-++.|..+|-+..+.| ..+++..++++|..++. |+..-|..+|+.-+.. -||... .+-.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34445555555555556666666665555 34555555555555443 3444455555543332 122222 2333444
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+...++-+.|..+|+...++ +..+ ...|-.||+-=..-|++..+..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 45555555566666543332 1111 33555555555555555555555555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.9 Score=43.31 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=53.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI----KTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
+.+...|+.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|.+.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567788888888889999999999998887754 443 35888888888999999998888888875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.19 E-value=6.1 Score=32.98 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=26.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC
Q 037477 454 CAANEVDRALLCFAKMMEKNY--DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP 512 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 512 (639)
.+.|++++|.+.|+.+...=. +-....--.|+.+|.+.|++++|...+++..+.+...|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 344555555555555444210 11122333444455555555555555555554433333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=18 Score=38.28 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHH
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRM 155 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m 155 (639)
|.+..|..+.......-.++-|...|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 77888988877766666666666665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.26 Score=31.70 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhH
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKI 616 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 616 (639)
+|..+..+|.+.|++++|.+++++.......++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 44555555555555555555555543333333333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.76 E-value=8.7 Score=37.94 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=49.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHH-------hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYI-------SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (639)
.+.|++.+|.+.+.+.+. +.|+.. +...++ .+.|+.++|+.-.+...+..+.-...|..-..++...++|
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777664 333322 222222 3557777777777776666555555555556666667777
Q ss_pred HHHHHHHhhC
Q 037477 597 YEAKDLLYKC 606 (639)
Q Consensus 597 ~~A~~~~~~m 606 (639)
++|.+-+++.
T Consensus 338 e~AV~d~~~a 347 (486)
T KOG0550|consen 338 EEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHH
Confidence 7777777763
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.9 Score=40.70 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=55.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE-----NGCIPDIKTWTIL 449 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~l 449 (639)
++..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35557777777788888888888877665 45667788888888888888888888777654 4677766666555
Q ss_pred HHH
Q 037477 450 IQG 452 (639)
Q Consensus 450 i~~ 452 (639)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.71 E-value=17 Score=37.07 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=124.5
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHH-
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKT- 205 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 205 (639)
.|-...-++|..++++-...-+..+..+|.+.| -+...|..++..|...|. ..+..+++++++....+.+...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n----~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGN----EQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCc----hhhHHHHHHHHHhcchhHHHHHH
Confidence 455666788999999988899999999999987 477889999999998853 2346777877777777776554
Q ss_pred HHHHHhcCCchHHHHHHHhhccCc----CCHHHHHHHHHHh----ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 037477 206 LVDVVLGSDWDDKIGKKLEDMKIE----LSDNFVLTVLKEL----RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLA 277 (639)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~----~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~ 277 (639)
|...|-+ +..+.+...+.+.--. .....+-.+...+ ..+.+.-+.+...+....|...-.+.+.-+-.-|.
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444443 5555555555444211 1122222233222 34566777777777777777777888888889999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 278 RHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
...++++|++++..+.+.. .-|...-..++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 9999999999999888775 4466666666665544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.69 E-value=10 Score=37.48 Aligned_cols=137 Identities=13% Similarity=0.029 Sum_probs=75.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 037477 309 RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR 388 (639)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 388 (639)
+.|.+.|++..|..-|+..... +-.....+.+....... .-..++..+.-+|.+.++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~---------------l~~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF---------------LEYRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH---------------hhccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 4578899999999998876542 00000001111111100 011235556667777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC-HHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH-CAANE-VDRALLCF 466 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~-~~~g~-~~~a~~~~ 466 (639)
+..|++.-......+ ++|+-..-.-..+|...|+++.|+..|+++++.. |+....+.=+..| -+... .+...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776665 4555555555667777777777777777777643 4444333333322 22222 23335566
Q ss_pred HHHHH
Q 037477 467 AKMME 471 (639)
Q Consensus 467 ~~m~~ 471 (639)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.50 E-value=3.4 Score=40.53 Aligned_cols=133 Identities=14% Similarity=0.034 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEME----ENGCI-PDIKTWTILIQGHCAANEVDRALLCFAKMME----KNY-DADAD 479 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~~~~~ 479 (639)
.|..|-..|--.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555666788888887665422 22211 1234677788888888999999888876543 221 22334
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEK----VRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...+|-+.|.-...+++|+.++.+-..- ....-....|.+|-.+|...|..++|+.+...-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556777777777888888887653221 11222456777888888888998988887776554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.43 E-value=11 Score=34.34 Aligned_cols=218 Identities=20% Similarity=0.092 Sum_probs=115.3
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12445556666666677777766666665542 122344555555666666666677777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 465 CFAKMMEKNYDADADLLDVLIN-GFLSQKRVNGAYKLLVEMIEKVRL--RPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.+.........+ ......... .+...|+++.|...|...... .. ......+......+...++.+++...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 776666543332 111112222 566677777777777766432 11 1122333333333555667777777777666
Q ss_pred hCCCCCC---hHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 542 KQNYPPF---PEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 542 ~~~~~p~---~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
....... .......+...++.+.|...+.......+.....+..+...+...|.++++...+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 5321100 1222333345566777777777766665544555555555555556677776666653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=6.8 Score=31.85 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH---HHHHHcCCC
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK-NYDADADLLDVL---INGFLSQKR 493 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l---i~~~~~~g~ 493 (639)
.+..|+++.|++.|.+....-.+ ....||.-.+++.-.|+.++|++=+++.++. |-+ +.....+. -..|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 44566666666666666654322 4566666666666677777776666666653 212 22222221 223555666
Q ss_pred hhHHHHHHHHHHH
Q 037477 494 VNGAYKLLVEMIE 506 (639)
Q Consensus 494 ~~~A~~~~~~m~~ 506 (639)
-+.|..-|+..-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 6666666665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.36 E-value=12 Score=38.21 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
|..++-+.|+.++|.+.|.+|.+.....-+......|++++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555555555555555543222222334445555555555555555555554
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.23 E-value=3.2 Score=42.60 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVV 289 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~ 289 (639)
-.+.++..+-+.|..+.|+++.
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHhhc
Confidence 3555555555666666555553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.70 E-value=14 Score=36.43 Aligned_cols=132 Identities=17% Similarity=0.076 Sum_probs=91.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH----HCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMK----NAGFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEE----NGCI-PDIK 444 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~ 444 (639)
.|..+-+.|.-.|+++.|....+.-. +-|-+ .....+..+..+++-.|+++.|.+.|+.-.. .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666667788999887655432 22211 2235677888999999999999999887532 2211 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+.-+|...|.-..++++|+.++.+=+. ....-....+.+|-.+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666788888888899999988876443 11223456788999999999999999988776544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.69 E-value=3.4 Score=39.00 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADLLDV 483 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 483 (639)
.++..++..+...|+++.+...++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667778888888888888888888876543 777888888888888888888888877765 577776666655
Q ss_pred HHHH
Q 037477 484 LING 487 (639)
Q Consensus 484 li~~ 487 (639)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.54 E-value=15 Score=39.74 Aligned_cols=224 Identities=11% Similarity=0.074 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHhhcCCCCCCHH-
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM-------MEDAVKLFEFMMDGPYKPSVQ- 337 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~l~~~m~~~g~~p~~~- 337 (639)
...| ++|-.|.|+|++++|.++..+.... .......+...+..|....+ -+....-|++..+.....|++
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 3455 4677889999999999999655543 34455667777777776532 345666677666554433433
Q ss_pred --HHHHHHHHHhhcCC--Cc----hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 037477 338 --DCSLLLRSISSINN--PD----LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNI 409 (639)
Q Consensus 338 --~~~~ll~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 409 (639)
.|..+ ..|--... +. .+.+..+.-.+.......+...+ ..--+++..+.+...-+....+ ..
T Consensus 190 ~AvY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~--------e~~~L~~LQ~~i~~~Ge~~F~~-~~ 259 (613)
T PF04097_consen 190 RAVYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY--------ERYTLEDLQKLILKYGESHFNA-GS 259 (613)
T ss_dssp HHHHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS------------HHHHHHHHHHH-GGGCTT---
T ss_pred HHHHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc--------ccccHHHHHHHHHHhchhhccc-ch
Confidence 22222 22211110 01 11111111111111110000000 0001122222222332222223 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN-YDADADLLDVLINGF 488 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~ 488 (639)
..-.....+.-.|+++.|.+.+.+ ..+...|.+.+.+.+.-|.-.+-.+... ..+.... -.|...-+..||..|
T Consensus 260 ~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 260 NPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp ----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHH
Confidence 112234556678999999998877 2223356666666665544333222222 3333211 111225678888888
Q ss_pred HcC---CChhHHHHHHHHHHH
Q 037477 489 LSQ---KRVNGAYKLLVEMIE 506 (639)
Q Consensus 489 ~~~---g~~~~A~~~~~~m~~ 506 (639)
.+. .+..+|.++|--+..
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 763 467788888876654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.29 E-value=3.6 Score=38.86 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|..+.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555554444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.13 E-value=8.1 Score=39.26 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKT 519 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ 519 (639)
...-..+..++.+.|+.++|.+.+.+|.+.... -+......|+.++...+.+.++..++.+-.+. . -|. ...|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~-lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-S-LPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-c-CCchHHHHHHH
Confidence 344445666677888888888888888765322 23446677888888888888888888775332 1 233 455665
Q ss_pred HHH
Q 037477 520 LIE 522 (639)
Q Consensus 520 li~ 522 (639)
.+-
T Consensus 337 ALL 339 (539)
T PF04184_consen 337 ALL 339 (539)
T ss_pred HHH
Confidence 543
|
The molecular function of this protein is uncertain. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.3 Score=40.13 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=70.0
Q ss_pred cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC---CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 367 LGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG---FEP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 367 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
.|...+..+....+..-....+++.+...+-.+...- ..| +.++|..++ -.-+.++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 3445555566666666666677888887777665421 112 222333222 2336678888888888888889
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
|..+++.+|+.+.+.+++.+|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887777654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.1 Score=36.39 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=58.0
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHH-hhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 514 QATFKTLIEKL---LGARRLEEAMNLLRLMKKQNYPPFP---EPFVQYI-SKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 514 ~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
..+.+.||+.+ .+.++.+++..+++-+.- +.|.. .++-..+ ...|++++|..+|+.+.+..+..+..-..+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34555665544 467899999999998886 34443 4444444 578999999999999887755555444444
Q ss_pred HHHHHhcCCHH---HHHHHHhhC
Q 037477 587 FESFFNEGRHY---EAKDLLYKC 606 (639)
Q Consensus 587 ~~~~~~~g~~~---~A~~~~~~m 606 (639)
..++...|+.+ .|.++++.-
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC
Confidence 45555555533 344455443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.57 Score=28.45 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+|..|..+|.+.|++++|++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 478899999999999999999998
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.77 E-value=12 Score=32.18 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..|...++ +++.+..++|+.-|..+.+.|...-... -...-......|+...|...|+++-..
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 33443333 2455556666666666666554321111 011112334556666666666665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.4 Score=28.21 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=9.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
+...|...|++++|+++|++..+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.24 E-value=12 Score=31.30 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=25.6
Q ss_pred HccCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 384 TKLGRFDEAEKMMKAMKNAGF--EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
.+.|++++|.+.|+.+..+-. +-....--.++.+|.+.|++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555555555554310 0011223334455555555555555555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.05 E-value=18 Score=33.14 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHHH
Q 037477 202 VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGE----HSGYKHNTITYNGILRVLA 277 (639)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~----~~~~~p~~~~~~~li~~~~ 277 (639)
.+.....+|..+|..+.+...+++... ++. ..+|++|+.+|++... ....+--...|..+-.+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak---------~le--nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK---------ALE--NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH---------Hhh--cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 445555566666665555555554320 000 2456667776665521 1111223345566667788
Q ss_pred cCCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 037477 278 RHESVRDFWNVVEEMKKE----GYEMDI-DTYIKISRQFQKFRMMEDAVKLFEFMMDG 330 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (639)
+...+++|-..|.+-... .--++. ..|...|-.+....++..|.+.++.-.+.
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 888888776665443221 111121 23555566666778889999988875554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.01 E-value=19 Score=33.36 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGF--EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
..|+..+ .-.+.|++++|.+.|+.+..... +-...+.-.++-++-+.++++.|....++....-..-...-|..-|.
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444444 34577999999999999986631 11233445566778899999999999999876543323334554555
Q ss_pred HHHHc-------CCHHHHHH---HHHHHHHc----CCCCCHHHH------------HHHHHHHHcCCChhHHHHHHHHHH
Q 037477 452 GHCAA-------NEVDRALL---CFAKMMEK----NYDADADLL------------DVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 452 ~~~~~-------g~~~~a~~---~~~~m~~~----g~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+++.- .|...+.+ -|++++.. ...||...- ..+.+-|.+.|.+..|..-+++|.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 54431 23333333 33333332 222332211 122334555555555555555555
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 506 EKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 506 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
+.+.-.+- ...+-.|..+|...|-.++|...-+-+.
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 54222111 2233444455555555555555444333
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.84 E-value=39 Score=36.72 Aligned_cols=86 Identities=5% Similarity=0.062 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch----hhHHHHHHHHHHHhhhccchh-H
Q 037477 128 SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKA----SDLAALNQFHDGMVKEIAMDN-V 202 (639)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~ 202 (639)
+...|. +|-.|.|.|++++|.++..+.... .......+...+..++...+- +....+..-|+..++.....+ .
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344564 677888999999999998655443 445667788888888775321 122345566666665544323 2
Q ss_pred HHHHHHHHhcCCc
Q 037477 203 AKTLVDVVLGSDW 215 (639)
Q Consensus 203 ~~~l~~~~~~~~~ 215 (639)
-.++..+.++|+.
T Consensus 189 K~AvY~ilg~cD~ 201 (613)
T PF04097_consen 189 KRAVYKILGRCDL 201 (613)
T ss_dssp HHHHHHHHHT--C
T ss_pred HHHHHHHHhcCCc
Confidence 2344444444433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.80 E-value=12 Score=32.04 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=7.0
Q ss_pred HcCCChhHHHHHHHHH
Q 037477 489 LSQKRVNGAYKLLVEM 504 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m 504 (639)
...|++.+|..+|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444444444444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.60 E-value=24 Score=33.96 Aligned_cols=153 Identities=11% Similarity=0.025 Sum_probs=103.1
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH--HHHHHHHHcCCHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KTWT--ILIQGHCAANEVD 460 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~--~li~~~~~~g~~~ 460 (639)
..|++.+|-..++++.+.- +.|...++..=++|.-+|+.+.-...++++... ..||. .+|. ...-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4577778877888877653 667788888888899999988888888887754 11333 3332 3334456789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL---RPWQATFKTLIEKLLGARRLEEAMNLL 537 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (639)
+|.+.-++..+-+ +-|.....++...+-..|+..++.++..+-...... .....-|.. .-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHH
Confidence 9999888888765 556777777777888889999998887764332110 000111222 22345568899999999
Q ss_pred HHHH
Q 037477 538 RLMK 541 (639)
Q Consensus 538 ~~m~ 541 (639)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.98 E-value=29 Score=34.21 Aligned_cols=308 Identities=16% Similarity=0.111 Sum_probs=177.8
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH--cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLA--RHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQ--FQKFRMME 318 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~ 318 (639)
-..+..+-++|+.-.++.| |.+|-.++. -.|+-..|.++-.+-.+. +.-|..-...++.+ -.-.|+++
T Consensus 66 w~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 66 WESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred HhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchH
Confidence 3455667777777654444 445555554 457888888877665432 12243333344433 34579999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHH-hhc-CCCchhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHH
Q 037477 319 DAVKLFEFMMDGPYKPSVQDCSLLLRSI-SSI-NNPDLGLVFRVANKYESLGNSLS-KSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
+|.+-|+.|... |. |--.=++++ ... ..++.+.+.+.-+.. .+..|. ...+.+.+...|..|+++.|+++
T Consensus 138 ~Ar~kfeAMl~d---PE--tRllGLRgLyleAqr~GareaAr~yAe~A--a~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 138 DARKKFEAMLDD---PE--TRLLGLRGLYLEAQRLGAREAARHYAERA--AEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred HHHHHHHHHhcC---hH--HHHHhHHHHHHHHHhcccHHHHHHHHHHH--HhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 999999999863 32 222222221 111 112222232222221 222232 34567788899999999999999
Q ss_pred HHHHHHCC-CCCCHHh--HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 037477 396 MKAMKNAG-FEPDNIT--YSQVIFGLC---KAGRFEDACNVLDEMEENGCIPDIK-TWTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 396 ~~~m~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
.+.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ ..||.. .-..-..++.+.|+..++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98876543 3344322 122332221 12345555554444443 345543 233445778899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037477 469 MMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 469 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (639)
+-+....|+. + ..|.+...-+.+..-++...+-..++|| ...-..+.++-...|++..|..--+...+ ..|
T Consensus 289 aWK~ePHP~i--a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~p 360 (531)
T COG3898 289 AWKAEPHPDI--A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAP 360 (531)
T ss_pred HHhcCCChHH--H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCc
Confidence 9887544443 2 2343333334555555555544456665 45566677788888998887766555544 456
Q ss_pred ChHhHHHHH----hhcCCHHHHHHHHHHhhcC
Q 037477 548 FPEPFVQYI----SKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 548 ~~~~~~~ll----~~~g~~~~a~~~~~~~~~~ 575 (639)
....|.-+- ...|+-+++...+.+..+.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 655554432 3569999999988877655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.93 E-value=55 Score=37.35 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 579 SSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
-......|+.++...|..+.|.++
T Consensus 1183 ~r~E~~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1183 IRNELKRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred ccHHHHHHHHHHHHcCCcHHHHHH
Confidence 333445678888888888877655
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.88 E-value=23 Score=32.89 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCccccCCh
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDS 614 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 614 (639)
+...|+.+|-. .+..+-.++++.-..++-.+|
T Consensus 306 AMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~Dp 337 (440)
T KOG1464|consen 306 AMTNLVAAYQN-NDIIEFERILKSNRSNIMDDP 337 (440)
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHhhhccccccH
Confidence 44556666543 334444444444333333333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=87.81 E-value=33 Score=34.62 Aligned_cols=381 Identities=10% Similarity=0.053 Sum_probs=201.1
Q ss_pred CCHHHHHHHHHhcCCChHHHHHHHHHHhh-cCCCCCC------------hHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 037477 93 LTHESVVYVLRKLDNDPEKASAFFNWVCD-KKQFRPS------------STVYSLMLRNLVNKDSLKQFWVTLRRMKEDH 159 (639)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~A~~~f~~~~~-~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g 159 (639)
.-..++..++.--.+..+.|++.|..-.. ..+..|. -..=+..++.+...|++.++..++++|...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 33344444444446888999888874433 2222221 1222567788899999999999999988754
Q ss_pred C----CCCHHHHHHHHHHHHhcCchhhHH-----HHHHHHH-------HHhhhc--------cchhHHHHHHHHHh----
Q 037477 160 C----YIEEETYLSILGVLKKAKKASDLA-----ALNQFHD-------GMVKEI--------AMDNVAKTLVDVVL---- 211 (639)
Q Consensus 160 ~----~~~~~t~~~ll~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~--------~~~~~~~~l~~~~~---- 211 (639)
. .-+..+|+.++-.+.++=-.+-.+ -.-..|+ .+.... +.++....++.-..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 3 368888988666666542111100 0000011 111000 01111222221111
Q ss_pred -cCCchHHHHHHHhhccCcCCHHHHHHHHHH-hccChHHHHHHHHHHhccCCCC----CCHHHHHHHHHHHHcCCChhHH
Q 037477 212 -GSDWDDKIGKKLEDMKIELSDNFVLTVLKE-LRIYPVKALGFFRWVGEHSGYK----HNTITYNGILRVLARHESVRDF 285 (639)
Q Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~A~~~f~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~a 285 (639)
+......+....++....+.++.++..+.. .-.+++++..+-+.+..- .+. .=+.++..++...++.++...|
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~-~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS-KIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 112223444455555677788888877753 334666666555554211 111 1356888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-------HHHHHHhc----CCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH---hhcCC
Q 037477 286 WNVVEEMKKEGYEMDIDTYIK-------ISRQFQKF----RMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSI---SSINN 351 (639)
Q Consensus 286 ~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~---~~~~~ 351 (639)
.+.+.-+... .|+...-.. +-+..+.- -+...=+.+|+.....++.-.. ....|+.+. -+.|.
T Consensus 318 ~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 318 KQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCC
Confidence 9988877655 333322111 11112210 1122223334433332221111 111122211 11221
Q ss_pred CchhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHHh----HHHHHHH--HH
Q 037477 352 PDLGLVFRVANKYESLG---NSLSKSVYDGIHRALTK---LGRFDEAEKMMKAMKNAGFEPDNIT----YSQVIFG--LC 419 (639)
Q Consensus 352 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~--~~ 419 (639)
..+.+..+++...+.. ......++..+=.+|.. ...+..-.++-+-+.+.|++|-.+. -|.|-++ +.
T Consensus 395 -~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 395 -CDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred -ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 1233444444333321 11222233333334433 2445666677777778888775443 3334333 44
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
..|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..++++=+
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 67999998766555555 5689999999988889999999999999764 66666665533
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.72 E-value=14 Score=30.18 Aligned_cols=91 Identities=18% Similarity=0.057 Sum_probs=70.3
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHHc
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN-GCIPDIK---TWTILIQGHCAA 456 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~---t~~~li~~~~~~ 456 (639)
-+++..|+++.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+. |-+ +.. .|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 35788999999999999987653 446778999999999999999999999988764 322 222 233334456778
Q ss_pred CCHHHHHHHHHHHHHcC
Q 037477 457 NEVDRALLCFAKMMEKN 473 (639)
Q Consensus 457 g~~~~a~~~~~~m~~~g 473 (639)
|+-+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999888887776
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.62 E-value=25 Score=33.13 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=45.6
Q ss_pred hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 557 SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 557 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
..+|.+.+|.++.++.....|-+...|..++..|+..|+--.|.+-++++.
T Consensus 290 le~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 290 LEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 478999999999999999999999999999999999999777777777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=35 Score=34.73 Aligned_cols=113 Identities=10% Similarity=0.136 Sum_probs=75.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLC 465 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~ 465 (639)
.+..+|.+.-+...+.+ +.|......+..+....|+++.|...|++....+ || ..+|......+...|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566777777777776 5577777777777777888999999999888765 44 34555555566778899999998
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 466 FAKMMEKNY-DADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 466 ~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+++..+... +.-.......++.|+..+ .++|.+++-+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 888766421 112233333445666544 4667766654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.33 E-value=13 Score=32.80 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHH------H
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA-DAD------L 480 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~------~ 480 (639)
.+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....--.+ |.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666777777777777777777666543332 2345566666667777777666666554421111 111 1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
|..| .+...+++..|-+.|-+...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCc
Confidence 1121 12345667777666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.31 E-value=8.5 Score=33.93 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 267 ITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD--IDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5678899999999999999999999988754443 45577888889999999999888877754
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=38 Score=34.47 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 389 FDEAEKMMKAMKN-AGFEPD-NITYSQVIFGLCK---------AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 389 ~~~A~~~~~~m~~-~g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
.+.|+.+|.+... ....|+ ...|..+..++.. .....+|.+.-++..+.+.. |......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 4567777877762 122443 3334333332221 22344555555555555533 5666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLL 537 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (639)
+.+.|...|++....+ +-...+|...-..+.-+|+.++|.+.+++..+....+.-....-..++.|+.. .+++|+.++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 6777777777776653 11223333333344556777777777776543311111222233334445443 345555555
Q ss_pred H
Q 037477 538 R 538 (639)
Q Consensus 538 ~ 538 (639)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.81 E-value=6.1 Score=30.54 Aligned_cols=60 Identities=5% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.+.+..-+ .|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 45555666666777788888888888888888888888888877776443322 5655553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.9 Score=26.13 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
|+.|...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.29 E-value=1.6 Score=36.43 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=50.3
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCChHhHHHHH-hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH---HHH
Q 037477 526 GARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYI-SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY---EAK 600 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~ 600 (639)
..++.+++..+++.|.-. .-.+...+|-..+ ...|++++|.++|+.+.+..+..+..-..+..++.-.|+.+ .|.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~ 101 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHAD 101 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHH
Confidence 478999999999998862 2223344665555 57899999999999998874443433333333444445432 355
Q ss_pred HHHhh
Q 037477 601 DLLYK 605 (639)
Q Consensus 601 ~~~~~ 605 (639)
+++..
T Consensus 102 ~~le~ 106 (153)
T TIGR02561 102 EVLAR 106 (153)
T ss_pred HHHHh
Confidence 55543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.17 E-value=43 Score=34.34 Aligned_cols=164 Identities=11% Similarity=0.059 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
|.....+++..++.+.+..-.+.+-.+|..-| -+...|-.++.+|..+ .-++-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445566667777777777777777776654 3556677777777766 556666777777665543 4433344444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYD-----ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
-|.+ ++...+...|.+....-++ .=...|.-|+..- ..+.+..+.+...+....|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 6666666666666554221 0112344433211 234555566666665554554445555555566666
Q ss_pred cCCHHHHHHHHHHHHh
Q 037477 527 ARRLEEAMNLLRLMKK 542 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~ 542 (639)
..++++|+++++.+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 6667777776665444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.95 E-value=7.2 Score=29.80 Aligned_cols=61 Identities=5% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
.-++.+-++.+....+.|+.....+.+++|.+.+++.-|.++|+.++.+.+. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3345555666666667777777777777777777777777777766654332 333455544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.15 E-value=53 Score=34.43 Aligned_cols=332 Identities=12% Similarity=0.082 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDID-TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
+...|+.||.---...+++.+..+++.+... -|... -|......=.+.|..+.+.++|++-++ |+.-+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3444555554444444455666666666644 34433 344444445566777777777776665 3445555555555
Q ss_pred HHHhhcCCCchhHHHHHHHHHHh-cCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-
Q 037477 344 RSISSINNPDLGLVFRVANKYES-LGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK- 420 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~- 420 (639)
..+.. ..++...+...++.... .|.. .+...|...|.--...+++.....++++..+. ....|+..-.-|.+
T Consensus 121 ~f~~n-~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 121 AFLKN-NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHhc-cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 54443 33444445555544433 2332 23445667777667778888888888887753 22223322222211
Q ss_pred --c------CCHHHHHHHHHHHHHC---C-CCCCHHHHH------------------HHHH-------HHHHcCCHHHHH
Q 037477 421 --A------GRFEDACNVLDEMEEN---G-CIPDIKTWT------------------ILIQ-------GHCAANEVDRAL 463 (639)
Q Consensus 421 --~------g~~~~A~~~~~~m~~~---~-~~p~~~t~~------------------~li~-------~~~~~g~~~~a~ 463 (639)
. ...+++.++-...... + ..+....+. .+-. ++-.........
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 1 1122222221111100 0 000111111 1111 111111222222
Q ss_pred HHHHHHHHc---CC----CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 464 LCFAKMMEK---NY----DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 464 ~~~~~m~~~---g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
..++.-++. .+ .++..+|..-+.--.+.|+.+...-+|+...-. +..-...|-..++-....|+.+-|..+
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 222222221 11 235677888888888999999999999987643 222344666666666667888888888
Q ss_pred HHHHHhCC--CCCChHhHHHHHh-hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHhhC
Q 037477 537 LRLMKKQN--YPPFPEPFVQYIS-KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK---DLLYKC 606 (639)
Q Consensus 537 ~~~m~~~~--~~p~~~~~~~ll~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~m 606 (639)
+....+-- -.|....+.+.++ ..|+.++|..+++.+.+..|...+.-..-+....+.|+.+.+. +++...
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 77666532 2355555556665 4589999999999999887544555555566777888888887 555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.96 E-value=25 Score=30.44 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDID-TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
....|..-+. +++.+..++|+.-|..+.+.|...-+. .---+.......|+-..|...|++.-...-.|-.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch
Confidence 3445555554 566778888999999888876432221 1122334467788899999999988765444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.91 E-value=16 Score=35.10 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=108.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCC
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKT----LIEKLLGARR 529 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~ 529 (639)
.-.|+..+|...|+++++. .+-|...+.-.-.+|.-.|+.+.....++++..+ ..|+...|.. +.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888899999886 4668888888888999999999999999988764 3455433332 2334557899
Q ss_pred HHHHHHHHHHHHhCCCCCC--hHhHHHHHhhcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 530 LEEAMNLLRLMKKQNYPPF--PEPFVQYISKFGTVEDASEFLKALSVKEYP----SSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
+++|++.-++..+-+-... ..+...++...|+..++.++..+-...-.. -...|-+..-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999888876332221 234556667789999999987766554222 2334566677777889999999999
Q ss_pred hh
Q 037477 604 YK 605 (639)
Q Consensus 604 ~~ 605 (639)
++
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 97
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.89 E-value=0.19 Score=42.65 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFE 325 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (639)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 556667777777777778877776655567777888888888776666666665
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.62 E-value=45 Score=33.17 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCh-HhHHHHHhhcCCHHHHHHHHHHhhc
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-----PPFP-EPFVQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~-~~~~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
..+|..+.+.+.+.|.++.|...+..+...+. .|.. ..+..++-..|+-++|...++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44666666777777777777777776665331 2222 2234444566666777666665554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.17 E-value=39 Score=32.10 Aligned_cols=122 Identities=19% Similarity=0.123 Sum_probs=74.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN 495 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (639)
......|++.+|..+|......... +...--.+..+|...|+.+.|..++..+...--.........=|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455678888888888887765433 345566677888888888888888887765422212222222334444444444
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 496 GAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+...+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.+
T Consensus 221 ~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444432 34 455556666777777888888776655554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.08 E-value=15 Score=28.13 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
|.-.+.+.+..+......|++.+..+.+++|-+.+|+..|.++|+-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555556666666677777777777777777777777777777665
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.76 E-value=35 Score=31.18 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=84.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
.|..|.+.-++.-|....+++.+ | ..+- +.+--|.+..+..--.++.+-....++.-+..-..+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34555555566666555555543 2 1121 22223445544444444444444455555555555554 566777
Q ss_pred hhHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCH
Q 037477 494 VNGAYKLLVEMIEKVRL-----------RPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTV 562 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~ 562 (639)
...|+.-++.-...+|. .|.......|+..|.+ +++++|.+++.++-+.|+.|.. ....++..+.++
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~ 285 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVVKNM 285 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhc
Confidence 77777777765543332 4667777888886665 7899999999999999998864 334455444444
Q ss_pred HHH
Q 037477 563 EDA 565 (639)
Q Consensus 563 ~~a 565 (639)
+-+
T Consensus 286 ~~~ 288 (333)
T KOG0991|consen 286 DVA 288 (333)
T ss_pred cHH
Confidence 433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.53 E-value=34 Score=30.86 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
+..||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +--.|+++-|.+-|...-+...-.|-...|.-+++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35677777777778888888888887777653333333333332 22357777777766666555444444444444433
Q ss_pred HHHhcCCHHHHHH-HHHHHHhCCCCCChHhHHHHHh--hcCCHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHh
Q 037477 523 KLLGARRLEEAMN-LLRLMKKQNYPPFPEPFVQYIS--KFGTVEDASEFLKALSVKE-------YPSSAAYLQVFESFFN 592 (639)
Q Consensus 523 ~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~--~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 592 (639)
+.-++.+|.. +.++... .|...|...+. -.|.+.+ +.+++++.... ..-.++|--|...|..
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2234444443 3333332 22222222221 1122111 12223322221 1134567777888888
Q ss_pred cCCHHHHHHHHhh
Q 037477 593 EGRHYEAKDLLYK 605 (639)
Q Consensus 593 ~g~~~~A~~~~~~ 605 (639)
.|+.++|..+|+-
T Consensus 250 ~G~~~~A~~LfKL 262 (297)
T COG4785 250 LGDLDEATALFKL 262 (297)
T ss_pred cccHHHHHHHHHH
Confidence 8888888888776
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.23 E-value=16 Score=28.27 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
|.-.+.+-+..+....+.|++.+..+.+++|-+.+++..|.++|+-.+..
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555666666677777777777777777777777777777777643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.22 E-value=13 Score=33.11 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK---NYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
+.|...|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|...+.+|...|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555555555544434444443433333 45556666666555551 22455666666666666666666554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.52 E-value=79 Score=34.39 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=64.0
Q ss_pred cChHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKH---NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 320 (639)
+.+++|++.-... .|..| -...+...|..+.-.|++++|-...-.|... +..-|.-.+..+...++....
T Consensus 370 k~yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 370 KKYEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred hHHHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 5677788777654 34444 4567888899999999999999998888865 677777777777777665543
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 037477 321 VKLFEFMMDGPYKPSVQDCSLLLRSISS 348 (639)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 348 (639)
. .-+....-..+...|..+|..+..
T Consensus 443 a---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 A---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred h---ccCCCCCcccCchHHHHHHHHHHH
Confidence 2 233333233455566666666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.76 E-value=58 Score=32.36 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
...+|..+...+.+.|.++.|...+.++...+... +......-....-..|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777777777777777776643111 223333334555666777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.84 E-value=3.5 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 580 SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+..|..+...|...|++++|++.+++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356888999999999999999999884
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.60 E-value=2.9 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
....+..++...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 455678889999999999988763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.5 bits (163), Expect = 9e-12
Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 5/234 (2%)
Query: 319 DAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDG 378
A L + P P + + LL+ + D+ + ++ S +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQ--APSGQHSQAQLSGQQQRLLA 132
Query: 379 IHRALTKLGRFDEAEKM---MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435
+ + A + + Y+ V+ G + G F++ VL ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 436 ENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN 495
+ G PD+ ++ +Q ++ + + M + L ++ + V
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP 549
A + P L+ + L +K
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 8e-08
Identities = 17/201 (8%), Positives = 46/201 (22%), Gaps = 3/201 (1%)
Query: 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLD---EMEENGCIPDIK 444
D + A + A ++L + + +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504
+ ++ G + + + D + Q + G + +E
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 505 IEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVED 564
+ + L+ L+ + A L+ + P P + + +
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 565 ASEFLKALSVKEYPSSAAYLQ 585
+ K + Q
Sbjct: 287 RVSYPKLHLPLKTLQCLFEKQ 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 5e-10
Identities = 75/457 (16%), Positives = 135/457 (29%), Gaps = 106/457 (23%)
Query: 13 LANSLLSIRSSSTRPLFTRVTHFFHISSFTASNQSHTSQFHINTCQKIFFSTSPNSSLEL 72
+A + S + F I N ++ + + QK+ + PN +
Sbjct: 166 VALDVC--LSYKVQCKM-----DFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 73 ILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDK---KQFRPSS 129
+ + + + EL L + L L N V + F S
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-----------VQNAKAWNAFNLSC 266
Query: 130 TVYSLML-RNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAK-KASDLAALN 187
+ L+ R D L T + + + S+L LK + DL
Sbjct: 267 KI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLP--R 320
Query: 188 QFHDGMVKEIAMDNVAKTLVDVVLGSD-WDDKIGKKLEDMKIELSDNFVLTVLK--ELR- 243
+ + +++ +A+++ D + D W KL + IE S L VL+ E R
Sbjct: 321 EVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTI-IESS----LNVLEPAEYRK 373
Query: 244 IYPVKALGFFR-------------WVGEHS------------------GYKHNTITYNGI 272
++ L F W K +TI+ I
Sbjct: 374 MF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 273 LRVLAR--------HESVRDFWNVVEEMKKEGYEMD-IDTYI--------KISRQFQKFR 315
L H S+ D +N+ + + +D Y K ++
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 316 MMEDAVKLFEFM------------MDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANK 363
+ F F+ G ++Q I + LV + +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 364 YESLGNSLSKSVY-DGIHRALT--KLGRFDEAEKMMK 397
+ +L S Y D + AL F+EA K ++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 78/471 (16%), Positives = 146/471 (30%), Gaps = 145/471 (30%)
Query: 256 VGEHSGYKHNTITYNGILRVLARHESVRDF-WNVVEEMKKEGY---EMDIDTYIKISRQF 311
GEH ++ Y IL V V +F V++M K E+D +
Sbjct: 11 TGEH---QY---QYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVS 62
Query: 312 QKFRMM-------EDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-PDLGLVFRVANK 363
R+ E+ V+ F ++ + + L+ I + P + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKF---VEEVLRI---NYKFLMSPIKTEQRQPSM-----MTRM 111
Query: 364 YESLGNSLSKSVYDGIHRALTKLG--RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA 421
Y + L + K R K+ +A+ N+ +I G+ +
Sbjct: 112 YIEQRDRLYNDN-----QVFAKYNVSRLQPYLKLRQALLELRPAK-NV----LIDGVLGS 161
Query: 422 GRFEDACNVLDEMEENGCIPDIKTW-TILIQGHCAANEVDRAL-----LCFAKMMEKNYD 475
G+ A +V + + W + +C N + L L + ++ N+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNL---KNC--NSPETVLEMLQKLLY--QIDPNWT 214
Query: 476 ADADLLDVL----------INGFLSQKRVNGAYK--LLVEMIEKVR-LRPWQATF----K 518
+ +D + + L K Y+ LLV + V+ + W A F K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLV--LLNVQNAKAWNA-FNLSCK 267
Query: 519 TLI--------EKLLGARR-------------LEEAMNLLRL---MKKQNYPP-----FP 549
L+ + L A +E +LL + Q+ P P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 550 -----------------EPFVQY-ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESF- 590
+ + K T+ ++S L L EY ++F+
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEY------RKMFDRLS 379
Query: 591 -FNEGRHYEAK-------DLLYKCPHHI-RQDSKISLLFGSAKSNKVTIPS 632
F H D++ + + K SL+ K + ++IPS
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-05
Identities = 32/228 (14%), Positives = 80/228 (35%), Gaps = 20/228 (8%)
Query: 386 LGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLC--KAGRFEDACNVLDEMEENGCIPDI 443
+G + + +A + P+ V ++ LDE++ + P++
Sbjct: 12 IGSYQQCIN--EAQRVKPSSPERDVERDVFLYRAYLAQRKYGVV---LDEIKPS-SAPEL 65
Query: 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLSQKRVNGAYKLLV 502
+ + + + + D + + M ++ D + L + + + + + A + L
Sbjct: 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 503 EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN----YPPFPEPFVQYISK 558
+ L ++ LL RL+ A L+ M+ Q+ +V +
Sbjct: 126 QGDS---LECMAM----TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 559 FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606
++DA + ++ K P+ +GR A+ +L +
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 11/147 (7%)
Query: 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEE 436
+ L KL R D A K +K M++ + D T +Q+ + +DA + EM +
Sbjct: 138 QILLKLDRLDLARKELKKMQDQ--DEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194
Query: 437 NGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNG 496
C P + H A + A + ++K+ + L L+ +
Sbjct: 195 K-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPE 252
Query: 497 AYKLLVEMIEKVRLRPWQATFKTLIEK 523
+ ++ K K
Sbjct: 253 VTNRYLSQLKD--AHRSHPFIKEYRAK 277
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.66 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.51 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.36 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.3 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.28 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.25 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.24 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.21 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.21 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.19 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.09 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.07 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.06 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.04 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.01 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.97 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.96 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.84 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.8 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.6 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.59 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.56 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.53 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.51 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.51 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.5 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.48 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.48 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.47 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.46 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.46 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.42 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.39 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.38 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.33 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.26 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.25 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.21 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.13 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.12 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.1 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.1 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.09 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.09 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.09 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.09 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.08 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.03 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.03 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.02 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.0 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.96 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.96 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.95 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.95 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.95 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.92 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.9 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.89 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.88 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.88 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.87 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.86 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.81 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.8 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.78 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.75 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.74 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.68 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.62 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.6 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.59 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.43 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.43 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.32 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.31 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.2 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.18 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.18 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.17 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.98 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.83 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.5 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.29 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.79 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.67 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.27 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.16 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.61 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.21 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.02 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.72 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.71 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.29 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.23 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.65 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.39 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.39 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.95 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.16 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.72 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.71 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.34 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.41 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 86.35 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.35 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.09 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.16 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.98 | |
| 2dhy_A | 67 | CUE domain-containing protein 1; structural genomi | 83.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.63 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.3 | |
| 1wgl_A | 59 | TOLL-interacting protein; CUE domain, structural g | 82.05 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=321.97 Aligned_cols=479 Identities=8% Similarity=-0.077 Sum_probs=379.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.+.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|+++++.
T Consensus 66 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~- 137 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL-----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK- 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH-
T ss_pred cCccCCCCCccccchH-----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH-
Confidence 3556667777777765 7899999999999999999999999999985 4588899999999999999887764
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHN 265 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~ 265 (639)
.++..+......+.+...+..+|.+.|..+++...+++....... +...+.......+.+++
T Consensus 138 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 138 --CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD----------------EKNANKLLMQDGGIKLE 199 (597)
T ss_dssp --HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------------CCCSSCCHH
T ss_pred --HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc----------------ccccccccccccccchh
Confidence 556666555556668889999999988888888888853211100 00001111123455667
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--------------------------------------HH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI--------------------------------------KI 307 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--------------------------------------~l 307 (639)
..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+. .+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 8899999999999999999999999988764 22333333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 387 (639)
+..|.+.|++++|.++|+++.+. .++..+++.+..++.+.+ +.+.+..+++.+.+.+. .+..+++.++.+|.+.|
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS--RFIDVLAITTKILEIDP-YNLDVYPLHLASLHESG 353 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHT
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhC
Confidence 55677889999999999999876 589999999999999887 57788888888887653 36788999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998664 56788999999999999999999999999987543 368899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 037477 468 KMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ---- 543 (639)
Q Consensus 468 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 543 (639)
++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 999875 4578999999999999999999999999998762 336789999999999999999999999999875
Q ss_pred CCCCC--hHhHH---HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHH
Q 037477 544 NYPPF--PEPFV---QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISL 618 (639)
Q Consensus 544 ~~~p~--~~~~~---~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 618 (639)
+..|+ ..++. .++.+.|++++|.++++++.+..|.+..+|..+..+|.+.|++++|.+.++++....+..+....
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 66777 34443 44578899999999999999888889999999999999999999999999998655555555554
Q ss_pred hhh
Q 037477 619 LFG 621 (639)
Q Consensus 619 l~~ 621 (639)
.++
T Consensus 589 ~l~ 591 (597)
T 2xpi_A 589 LLK 591 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=296.18 Aligned_cols=467 Identities=9% Similarity=-0.059 Sum_probs=374.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|+.+|+.+.. ..|+..+|..++..|.+.|++++|..+|+++... +++..+++.++.+|.+.|+++++..
T Consensus 97 ~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp TTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 6899999999999975 3378899999999999999999999999988654 6889999999999999999888764
Q ss_pred HHHHHHHHhhhc-----------------cchhHHHHHHHHHhcCCchHHHHHHHhhcc--CcCCHHHHHHHHHHhccCh
Q 037477 186 LNQFHDGMVKEI-----------------AMDNVAKTLVDVVLGSDWDDKIGKKLEDMK--IELSDNFVLTVLKELRIYP 246 (639)
Q Consensus 186 ~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 246 (639)
. ++...... ....++..+..+|.+.|..+++...++++. .+..+..............
T Consensus 172 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 248 (597)
T 2xpi_A 172 L---LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248 (597)
T ss_dssp H---HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH
T ss_pred H---HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc
Confidence 4 44322211 123467888899999999988888888874 2223333222211111111
Q ss_pred HHHHHH-----HHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 247 VKALGF-----FRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 247 ~~A~~~-----f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 321 (639)
...... |..+. ..+..++..+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+
T Consensus 249 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 249 DEEWDLVLKLNYSTYS-KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHSCTHHHH-GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHhcCCcccc-cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHH
Confidence 111111 23332 2233445566777788899999999999999998876 679999999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
++|+++.+.+ +.+..++..++.++...+ +...+..++..+.+. .+.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 326 AITTKILEID-PYNLDVYPLHLASLHESG--EKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHC-TTCCTTHHHHHHHHHHHT--CHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998754 336778888888888777 466788888877744 345678899999999999999999999999987
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 64 45688999999999999999999999999998754 378999999999999999999999999999875 4578999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---H
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---V 553 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~ 553 (639)
+.++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ +.+..++ .
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 999999999999999999999997752 55777 7899999999999999999999999998754 2244444 3
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
.++...|++++|.++|+++.+..|.+...|..+..+|.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 44578899999999999999999999999998887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=276.18 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=171.6
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHH
Q 037477 283 RDFWNVVEEMKKEGYEMDI-DTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVA 361 (639)
Q Consensus 283 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 361 (639)
..+..+.+.+.+++..+.+ ..++.+|.+|++.|++++|+++|++|.+.|++||..|||+||.+|++.+....
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 3455556666666655443 35777788888888888888888888888888888888888887776553221
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 362 NKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 362 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
..+.+.+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 80 ---------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P 138 (501)
T 4g26_A 80 ---------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP 138 (501)
T ss_dssp ---------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred ---------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 12345678899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
|..||+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. +..|+..||+.++
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~ 217 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIE 217 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred HHHHhc
Q 037477 522 EKLLGA 527 (639)
Q Consensus 522 ~~~~~~ 527 (639)
..|+..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=270.13 Aligned_cols=205 Identities=16% Similarity=0.252 Sum_probs=172.3
Q ss_pred HHHHHHHHhccCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 037477 249 ALGFFRWVGEHSGYKHN-TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM---------ME 318 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~ 318 (639)
+..+++.+. +.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~-~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAK-KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHH-HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344444443 4444443 456899999999999999999999999999999999999999999988765 56
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 037477 319 DAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (639)
+|.++|++|.+.|+.||.. +|+++|.+|++.|++++|.++|++
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~-------------------------------------tyn~lI~~~~~~g~~~~A~~l~~~ 130 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEA-------------------------------------TFTNGARLAVAKDDPEMAFDMVKQ 130 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHH-------------------------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHH-------------------------------------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777777666666555 456667778888999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 478 (639)
|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+.
T Consensus 131 M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 131 MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 037477 479 DLLDVLINGFLSQ 491 (639)
Q Consensus 479 ~~~~~li~~~~~~ 491 (639)
.||+.++..|+..
T Consensus 211 ~T~~~l~~~F~s~ 223 (501)
T 4g26_A 211 STFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-22 Score=201.86 Aligned_cols=372 Identities=12% Similarity=0.021 Sum_probs=262.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|++.|+.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 12 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~--- 85 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE--- 85 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH---
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH---
Confidence 4788888888877766321 344556666677777888888888877766543 3456677777776666654443
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHN 265 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~ 265 (639)
|+..|+.+.+.. +.+
T Consensus 86 ---------------------------------------------------------------A~~~~~~al~~~--p~~ 100 (388)
T 1w3b_A 86 ---------------------------------------------------------------AIEHYRHALRLK--PDF 100 (388)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHC--TTC
T ss_pred ---------------------------------------------------------------HHHHHHHHHHcC--cch
Confidence 444444443211 224
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+. .|
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p----------- 166 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QP----------- 166 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC-----------
Confidence 5677888888888888888888888877763 334556677777777788888888888777542 11
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.+..+|..+...+...|++++|.+.|+++.+.+ +.+...|..+...+...|+++
T Consensus 167 -------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 167 -------------------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp -------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 123456667777888888888888888887764 345667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+|...|++..+.... +..++..+...|...|++++|.+.++++.+.+ +.+..+|..+...|.+.|++++|...|+++.
T Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888887765422 56778888888888888888888888888764 3356778888888888888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-Hh---HHHHHhhcCCHHHHHHHHHHhhcCCCCCHH
Q 037477 506 EKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EP---FVQYISKFGTVEDASEFLKALSVKEYPSSA 581 (639)
Q Consensus 506 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~ 581 (639)
+. ...+..+|..+...+.+.|++++|.+.++++.+. .|+. .+ +..++.+.|++++|...|+++.+..|.+..
T Consensus 299 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 299 RL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred hh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 65 2345677888888888888888888888888763 3442 22 233346778888888888888877777888
Q ss_pred HHHHHHHHHHhcC
Q 037477 582 AYLQVFESFFNEG 594 (639)
Q Consensus 582 ~~~~l~~~~~~~g 594 (639)
.|..+...+...|
T Consensus 375 a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 375 AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHcc
Confidence 8888777776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-22 Score=203.73 Aligned_cols=317 Identities=15% Similarity=0.093 Sum_probs=261.3
Q ss_pred hHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 246 PVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFE 325 (639)
Q Consensus 246 ~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (639)
.++|..+++...+. .+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|++.|+
T Consensus 49 ~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444444322 24577889999999999999999999999988763 4456778999999999999999999998
Q ss_pred HhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 037477 326 FMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE 405 (639)
Q Consensus 326 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (639)
++.+. .|+ +...+..+...+...|++++|.+.|+++.+.. +
T Consensus 126 ~al~~--~p~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 126 SALQY--NPD------------------------------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHH--CTT------------------------------------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHh--CCC------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 87653 222 22345567778889999999999999998874 4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
.+..+|..+...|...|++++|...|+++.+.+.. +...|..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 46789999999999999999999999999987543 67889999999999999999999999998874 34688899999
Q ss_pred HHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCH
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTV 562 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~ 562 (639)
..|.+.|++++|...|+++.+.. ..+..+|..+...+.+.|++++|.+.++++.+.. +.+..++ ..++...|++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998752 2246789999999999999999999999998742 2333443 3344688999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 563 EDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 563 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
++|...++++.+..|.+...|..+..+|.+.|++++|.+.++++...
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999997443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-20 Score=193.46 Aligned_cols=259 Identities=12% Similarity=-0.017 Sum_probs=208.7
Q ss_pred CCchhHHHHHHHHHHh-----cCC--------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 037477 351 NPDLGLVFRVANKYES-----LGN--------SLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFG 417 (639)
Q Consensus 351 ~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 417 (639)
..+...+...+..... ... +.+..++..+...+...|++++|.+.|+.+.+.. |+...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 3456666666666655 211 2234577888899999999999999999998875 348888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
|...|++++|...++++.+.... +...|..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999876533 67789999999999999999999999999875 33677888899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-------hHhHHHHHhh---cCCHHHHH
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PF-------PEPFVQYISK---FGTVEDAS 566 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-------~~~~~~ll~~---~g~~~~a~ 566 (639)
...|+.+.+...- +...|..+...+...|++++|.+.++++.+.... ++ ...+..++.. .|++++|.
T Consensus 358 ~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 358 ETLFSEAKRKFPE--APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHSTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHccc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 9999999876322 4568888899999999999999999998763211 21 1223344467 89999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChh
Q 037477 567 EFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSK 615 (639)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 615 (639)
..++++.+..|.+...+..+..+|.+.|++++|.+.+++........+.
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 9999999888889999999999999999999999999986444333333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-19 Score=184.69 Aligned_cols=307 Identities=14% Similarity=0.082 Sum_probs=206.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
+.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+.+.+.+ |+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~------- 92 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD------- 92 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-------
Confidence 3467788888899999999999999999988763 4578889999999999999999999998886532 11
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH---HhHHHH-----
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN---ITYSQV----- 414 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l----- 414 (639)
+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..+
T Consensus 93 -----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 93 -----------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHH
Confidence 22345556666777777777777777776553 1222 444444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 415 -------IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 415 -------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...+...|++++|...|+++.+... .+...+..+...|.+.|++++|.+.|+++.+.. +.+..++..+..+
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3336677777777777777766542 256667777777777777777777777776653 3456677777777
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChH----
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTL------------IEKLLGARRLEEAMNLLRLMKKQNYPPFPE---- 550 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---- 550 (639)
|...|++++|...|+++.+. .|+ ...+..+ ...|.+.|++++|.+.++++.+. .|+..
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 295 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV 295 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 77777777777777777654 232 3333333 56677777777777777777662 23321
Q ss_pred -hH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhH
Q 037477 551 -PF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKI 616 (639)
Q Consensus 551 -~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 616 (639)
.+ ..++.+.|++++|...++++.+..|.+...|..+..+|...|++++|.+.+++.....+..+..
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 11 2233566777777777777776666677777777777777777777777777753333333333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-18 Score=178.96 Aligned_cols=328 Identities=10% Similarity=-0.000 Sum_probs=261.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+.+|+.+.+. .+.+..+|..+..+|.+.|++++|...|+++.+.+ +.+..+|..+...|.+.|++++|..
T Consensus 39 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 57889999999988643 24578999999999999999999999999999875 4578899999999999999999999
Q ss_pred HHHHhhcCCCCCCH----HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 037477 323 LFEFMMDGPYKPSV----QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 323 l~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (639)
.|+.+.+. .|+. ..+..+...+.. ..+..+...+...|++++|.+.|+.
T Consensus 116 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 116 DFKKVLKS--NPSENEEKEAQSQLIKSDEM-------------------------QRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999875 4543 344444333211 1133456678889999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 478 (639)
+.+.. +.+...+..+..+|.+.|++++|...|+++.+... .+..+|..+...|...|++++|...|+++.+.. +.+.
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 98765 45788899999999999999999999999987643 368899999999999999999999999999764 3345
Q ss_pred HHHHHH------------HHHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 479 DLLDVL------------INGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 479 ~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
..+..+ ...|.+.|++++|...|+.+.+...-.|. ...|..+...+.+.|++++|++.++++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~- 324 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM- 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 555444 78899999999999999999876222111 457888999999999999999999998873
Q ss_pred CCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHH
Q 037477 545 YPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFES------------FFNEG-----RHYEAKDLL 603 (639)
Q Consensus 545 ~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~ 603 (639)
.|+ ...+ ..++...|++++|...++++.+..|.+...+..+..+ |...| +.+++.+.+
T Consensus 325 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y 403 (450)
T 2y4t_A 325 -EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHH
Confidence 343 3333 3444688999999999999999988899999888843 44444 556667777
Q ss_pred hh
Q 037477 604 YK 605 (639)
Q Consensus 604 ~~ 605 (639)
++
T Consensus 404 ~~ 405 (450)
T 2y4t_A 404 RK 405 (450)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-18 Score=177.31 Aligned_cols=430 Identities=13% Similarity=0.014 Sum_probs=269.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+..|+.+.+.. |+...|..+...+.+.|++++|+..|+++.+.+ +.+..++..+..++...|+++++..
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 599999999999999833 799999999999999999999999999999875 3466789999999999998887754
Q ss_pred HHHHHHHHhhhccch-hHHHHHHHHHhcCCchHHHHHHHhhc---cC---cCCHHHHHHHHHHhc--cChHHHHHHHHHH
Q 037477 186 LNQFHDGMVKEIAMD-NVAKTLVDVVLGSDWDDKIGKKLEDM---KI---ELSDNFVLTVLKELR--IYPVKALGFFRWV 256 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~--~~~~~A~~~f~~~ 256 (639)
.+..+....... .....++..+............+..+ .. ......-........ .....+...+...
T Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 95 ---DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp ---HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred ---HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 455555543221 12222222221111111111111000 00 000000000000000 0000111111111
Q ss_pred hccCCC-----CCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcC
Q 037477 257 GEHSGY-----KHNTITYNGILRVLAR---HESVRDFWNVVEEMKK-----EGY--------EMDIDTYIKISRQFQKFR 315 (639)
Q Consensus 257 ~~~~~~-----~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g 315 (639)
...... +.+...+......+.. .|++++|...|+++.+ ..- +.+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 000000 1124455555554554 8999999999999887 311 234667888889999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
++++|...|+.+.+.. |+ ...+..+..+|...|++++|.+.
T Consensus 252 ~~~~A~~~~~~~l~~~--~~-------------------------------------~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PR-------------------------------------VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CC-------------------------------------HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred CHHHHHHHHHHHHhhC--cc-------------------------------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999886532 22 23345566677777777778777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037477 396 MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYD 475 (639)
Q Consensus 396 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 475 (639)
++.+.+.. +.+...|..+...|...|++++|...|++..+.... +...+..+...|...|++++|...++++.+.. +
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 369 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-P 369 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c
Confidence 77777654 345667777777777788888888888777765433 45677777777777888888888887777653 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 037477 476 ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLG---ARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
.+..++..+...|...|++++|...|+.+.+...-.++ ...|..+...+.. .|++++|.+.++++.+.. |+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 447 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PR 447 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TT
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cc
Confidence 34566777777777788888888887777654222222 3367777777777 788888888887777632 33
Q ss_pred hH-h---HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 549 PE-P---FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 549 ~~-~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
.. . +..++...|+.++|...|++..+..|.+...+..+
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 22 2 23334567888888888887777766666665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-17 Score=176.42 Aligned_cols=347 Identities=11% Similarity=-0.037 Sum_probs=237.2
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKE------GYEMDIDTYIKISRQFQKFRMM 317 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~ 317 (639)
++.++|+..|+.+.. .|+ ..+..+..+...+...+|...++.+... ...|+... +..+....+.
T Consensus 107 g~~~~A~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~ 176 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSL----NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFGIFDS 176 (537)
T ss_dssp TCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHHTSCH
T ss_pred CCHHHHHHHHHHHhc----CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHHhcCh
Confidence 556678888864421 222 2222344555555667777777777543 12233322 2233344444
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-------CchhHHHHHHHHHHhcCCCCC------hhhHHHHHHHHH
Q 037477 318 EDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-------PDLGLVFRVANKYESLGNSLS------KSVYDGIHRALT 384 (639)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------~~~~~~li~~~~ 384 (639)
+.+...+..... ..+....+...+........ .+...+...+..+.+...... ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 444443333221 12222222222221111110 123344455554444322211 224666778888
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
..|++++|.+.|+...+. .|+...|..+...|...|++++|...|+++.+.... +..+|..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999987 466888999999999999999999999999886533 67899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
.+++..+.. +.+...+..+...|...|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999875 3356788899999999999999999999998863 2345688889999999999999999999987632
Q ss_pred CC-CC-hHh------HHHHHhhc----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 545 YP-PF-PEP------FVQYISKF----------GTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 545 ~~-p~-~~~------~~~ll~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. +. ... ...++... |++++|...|++..+..|.+...|..+..+|.+.|++++|.+.+++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 11 111 12334555 99999999999999988999999999999999999999999999986
Q ss_pred Cc
Q 037477 607 PH 608 (639)
Q Consensus 607 ~~ 608 (639)
..
T Consensus 489 l~ 490 (537)
T 3fp2_A 489 AI 490 (537)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-17 Score=160.84 Aligned_cols=307 Identities=14% Similarity=0.076 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
|...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|+..|+.+.+. .|+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~--------- 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMD--------- 69 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---------
Confidence 34567777788888888888988888887764 446778888888888888888888888877643 111
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC--CCHHhHHHH--------
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE--PDNITYSQV-------- 414 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l-------- 414 (639)
+...+..+..++...|++++|.+.|++..+.... .+...+..+
T Consensus 70 ---------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 70 ---------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH
Confidence 2234566777777888888888888888765310 233344433
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 415 ----IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 415 ----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...|..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4677888888888888888877653 367788888888888888888888888888764 4567788888888888
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh-------
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFK------------TLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP------- 551 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------- 551 (639)
.|++++|...|+...+...- +...+. .+...+.+.|++++|.+.++++.+.. |+...
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 276 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKE 276 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHH
Confidence 88888888888888765222 222222 22556788899999999998888733 33221
Q ss_pred -HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhH
Q 037477 552 -FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKI 616 (639)
Q Consensus 552 -~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 616 (639)
+..++...|++++|...+++..+..|.+...|..+..+|.+.|++++|.+.+++.....+..+..
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 22334577899999999988888888888899999999999999999999988864444444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-16 Score=164.30 Aligned_cols=79 Identities=9% Similarity=0.049 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+..|+.+.+..+ .++..|..+...|.+.|++++|+..|++..+.+ +.+..++..+...+...|+++++..
T Consensus 38 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6899999999999987432 478899999999999999999999999998875 3467788889999999998888765
Q ss_pred HH
Q 037477 186 LN 187 (639)
Q Consensus 186 ~~ 187 (639)
..
T Consensus 115 ~~ 116 (537)
T 3fp2_A 115 DL 116 (537)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-19 Score=192.31 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=127.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKN---AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI 448 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 448 (639)
-..+||++|++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC------HHHHHHHH
Q 037477 449 LIQGHCAANE-VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW------QATFKTLI 521 (639)
Q Consensus 449 li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~li 521 (639)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++.. +..|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHH
Confidence 9999999998 578999999999999999999999999877664 33444444422 33333 44455566
Q ss_pred HHHHhcC
Q 037477 522 EKLLGAR 528 (639)
Q Consensus 522 ~~~~~~g 528 (639)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6676654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=184.34 Aligned_cols=137 Identities=7% Similarity=0.037 Sum_probs=120.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEME---ENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
..-..|||+||++||+.|++++|.++|++|. ..|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCh-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037477 482 DVLINGFLSQKRV-NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 482 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (639)
|+||+++++.|+. ++|.++|++|.++ |+.||..+|++++.++.+ +.+++.++++ ..++.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhH----HHHHHHHHHh-CcccCC
Confidence 9999999999984 7899999999998 999999999999987766 3445555555 334444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-15 Score=147.00 Aligned_cols=317 Identities=8% Similarity=-0.027 Sum_probs=248.5
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+..|+.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|..
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 588999999999886432 3468899999999999999999999999998874 4477899999999999999999999
Q ss_pred HHHHhhcCCCCC---CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 037477 323 LFEFMMDGPYKP---SVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 323 l~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (639)
.|+...+. .| +.......+..+. ....+..+...+...|++++|.+.++.+
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 93 DFKKVLKS--NPSEQEEKEAESQLVKAD------------------------EMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhc--CCcccChHHHHHHHHHHH------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999875 44 2221111111000 0112344567889999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 400 KNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 400 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...|...|++++|...+++..+.. +.+..
T Consensus 147 ~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 223 (359)
T 3ieg_A 147 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 223 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchH
Confidence 8775 45778899999999999999999999999998653 378899999999999999999999999999864 33344
Q ss_pred HHH------------HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 480 LLD------------VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ--ATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 480 ~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
.+. .+...+.+.|++++|...+++..+...-.+.. ..+..+...+.+.|++++|.+.+++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 301 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-- 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 333 23566899999999999999998863221111 23556778899999999999999999874
Q ss_pred CCCh-HhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 037477 546 PPFP-EPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE 593 (639)
Q Consensus 546 ~p~~-~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (639)
.|+. ..+ ..++...|++++|...|++..+..|.+...+..+..++...
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 3432 222 33446889999999999999999999999988887776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-17 Score=158.60 Aligned_cols=347 Identities=12% Similarity=0.129 Sum_probs=182.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|.++++.+.. | .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|+++++.
T Consensus 16 ~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi- 81 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV- 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH-
Confidence 5889999999999954 4 49999999999999999999999652 57789999998888877666543
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHN 265 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~ 265 (639)
.+++...+ ..++
T Consensus 82 -----------------------------------------------------------------~yl~~ark---~~~~ 93 (449)
T 1b89_A 82 -----------------------------------------------------------------KYLQMARK---KARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------HHHHHHHH---hCcc
Confidence 33332221 1455
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------------- 149 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------------- 149 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-----------------
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------------
Confidence 7788999999999999999998884 3678899999999999999999999999772
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.|..++.++.+.|++++|.+.+..+ .++.+|..++.+|+..|+++
T Consensus 150 -----------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 150 -----------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -----------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 2788999999999999999999988 27899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CChhHHHHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ--KRVNGAYKLLVE 503 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 503 (639)
.|......+ ...+.-...++..|.+.|.+++|..+++..+... +.....|+-|--.|++- +++.+.++.|.
T Consensus 195 lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~- 267 (449)
T 1b89_A 195 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW- 267 (449)
T ss_dssp HHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-
T ss_pred HHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence 996655442 2344446679999999999999999999998765 66788888887778765 34445555443
Q ss_pred HHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCC
Q 037477 504 MIEKVRLRP------WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKE 576 (639)
Q Consensus 504 m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~ 576 (639)
.+-++.| +...|..++-.|.+.++++.|.. .|.++ ...-+...|..++.+-.+.|--.+...-..+.
T Consensus 268 --~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~- 341 (449)
T 1b89_A 268 --SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF- 341 (449)
T ss_dssp --TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-
T ss_pred --HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-
Confidence 2223322 24478888888999999998876 34443 34456778889998888888766665555543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 577 YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.+...+.|+.++...=+...+.+++++...
T Consensus 342 --~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 342 --KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp --CGGGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred --CHHHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 455577888888888888888888888643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=151.13 Aligned_cols=290 Identities=9% Similarity=0.026 Sum_probs=174.3
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHH
Q 037477 262 YKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSL 341 (639)
Q Consensus 262 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (639)
.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------- 85 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL----------- 85 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------
Confidence 34455556666666666677777777777766553 334445555666666667777777666665431
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037477 342 LLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG-RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420 (639)
Q Consensus 342 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 420 (639)
.+.+...+..+...+...| ++++|.+.|++..+.. +.+...|..+...+..
T Consensus 86 ---------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 86 ---------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAV 137 (330)
T ss_dssp ---------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred ---------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 0123445666666666777 6777777777766553 3345566666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 037477 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (639)
.|++++|...|+++.+.... +...+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 77777777777776654422 34555556666777777777777777766653 33556666666677777777777777
Q ss_pred HHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-Hh---HHHHHhhcCCHHHHHHHH
Q 037477 501 LVEMIEKVR-------LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EP---FVQYISKFGTVEDASEFL 569 (639)
Q Consensus 501 ~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~ll~~~g~~~~a~~~~ 569 (639)
|++..+... ...+...|..+...|...|++++|.+.+++..+.. |+. .. +..++...|+.++|...+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 766655311 02224466666666667777777777776666532 221 11 222334556666666666
Q ss_pred HHhhcCCCCCHHHHHHHHHHH-HhcCC
Q 037477 570 KALSVKEYPSSAAYLQVFESF-FNEGR 595 (639)
Q Consensus 570 ~~~~~~~~~~~~~~~~l~~~~-~~~g~ 595 (639)
++..+..|.+...+..+..++ ...|+
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 666666666666666666666 33444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=150.85 Aligned_cols=281 Identities=11% Similarity=0.029 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
+.+...+..+...+...|++++|+++|+++.+.. | .+...+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p------------------------------------~~~~~~~ 60 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--P------------------------------------FHASCLP 60 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------------------------TCTTTHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C------------------------------------CChhhHH
Confidence 4456667778888888899999999998876531 1 1223344
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA 456 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 456 (639)
.++.++...|++++|..+++++.+.. +.+...|..+...+...| ++++|...|++..+.... +...|..+...+...
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVE 138 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHc
Confidence 56677778889999999998888764 446677888888888888 899999999988876532 567788888889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 457 NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 457 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+.. ..+...+..+...+...|++++|...
T Consensus 139 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999888865 3345666678888888999999999999887642 33467888888888899999999999
Q ss_pred HHHHHhCC----CC---CC-hH---hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 537 LRLMKKQN----YP---PF-PE---PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 537 ~~~m~~~~----~~---p~-~~---~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+++..+.. -. |. .. .+..++...|++++|...+++..+..|.+...|..+..+|.+.|++++|.+.+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88877521 00 22 12 2234446789999999999988888788888899999999999999999999988
Q ss_pred CCccccCChhHHHhhh
Q 037477 606 CPHHIRQDSKISLLFG 621 (639)
Q Consensus 606 m~~~~~~~~~~~~l~~ 621 (639)
.....+..+.....++
T Consensus 296 al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLG 311 (330)
T ss_dssp TTTTCSCCHHHHHHHH
T ss_pred HHccCCCchHHHHHHH
Confidence 7555444444444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-13 Score=141.60 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCchhhH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVL-KKAKKASDL 183 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~-~~~~~~~~~ 183 (639)
.|+++.|..+|+.+.+.. +.+...|...+..+.+.|++++|..+|++..+.. |+...|...+... ...|+.+++
T Consensus 25 ~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred hCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 588999999999988743 3567789999999999999999999999988764 6777776666433 234444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=150.93 Aligned_cols=223 Identities=10% Similarity=-0.031 Sum_probs=123.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI--------- 448 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~--------- 448 (639)
.+..+|...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..
T Consensus 103 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 103 YLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhc
Confidence 34444444455555555555444432 223444445555555555555555555554443211 1111100
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 449 ------LIQGHCAANEVDRALLCFAKMMEKNYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 449 ------li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
.+..+...|++++|...++++.+..... +..++..+...|...|++++|...|+++.+.. ..+...|..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~ 258 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLG 258 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 1222235666666666666666543211 35566666666666666666666666665541 12345666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChH-h---HHHHHhhcCCHHHHHHHHHHhhcCCCCC-----------HHHHHHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPE-P---FVQYISKFGTVEDASEFLKALSVKEYPS-----------SAAYLQV 586 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l 586 (639)
..+...|++++|.+.++++.+. .|+.. . +..++...|++++|...|++..+..|.+ ..+|..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH
Confidence 6666666666666666666552 23221 1 1223345566666666666665543333 8899999
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 037477 587 FESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~m 606 (639)
..+|.+.|++++|..++++-
T Consensus 337 ~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 337 RLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHhCChHhHHHhHHHH
Confidence 99999999999999988753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-12 Score=132.05 Aligned_cols=288 Identities=10% Similarity=0.034 Sum_probs=179.6
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLAR----HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK----FR 315 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 315 (639)
+++++|+..|+...+. -+...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 4566666666666432 145555556555555 556666666666666554 55566666666655 56
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChhH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK----LGRFDE 391 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 391 (639)
+.++|.+.|+...+.| +...+..+...|.. .+++++
T Consensus 202 ~~~~A~~~~~~a~~~~----------------------------------------~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG----------------------------------------DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CHHHHHHHHHHHHHTT----------------------------------------CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC----------------------------------------CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6666666666555432 22233344444443 577778
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA-----NEVDRA 462 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-----g~~~~a 462 (639)
|.+.|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 888887777654 44556666666666 777888888888777654 455666677777766 788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQK---RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG----ARRLEEAMN 535 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 535 (639)
...+++..+.| +...+..|-..|...| ++++|..+|+...+. + +...+..+-..|.. .+++++|.+
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888777765 4556666666666655 677788888777664 2 45566677777776 678888888
Q ss_pred HHHHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHH
Q 037477 536 LLRLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEY---PSSAAYLQVFESFF 591 (639)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~ 591 (639)
.|++..+.+.......+..++.. .++.++|..+|++..+..+ .+......+...+.
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 88887776532222223333443 6788888888887776642 24444444444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-14 Score=144.93 Aligned_cols=284 Identities=8% Similarity=-0.045 Sum_probs=169.0
Q ss_pred cChHHHHH-HHHHHhccCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 244 IYPVKALG-FFRWVGEHSGYKH--NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 244 ~~~~~A~~-~f~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 320 (639)
+++++|+. .|+...+...-.| +...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 44555665 5654432211112 34556677777777888888888888777764 44667777777777888888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 321 VKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
+..|+.+.+.. | .+..++..+..+|...|++++|.+.++++.
T Consensus 118 ~~~~~~al~~~--~------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 118 ISALRRCLELK--P------------------------------------DNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHC--T------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--C------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87777765421 1 122345556666667777777777777766
Q ss_pred HCCCCCCHHhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 037477 401 NAGFEPDNITYSQ---------------VIFGLCKAGRFEDACNVLDEMEENGCIP-DIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 401 ~~g~~~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
+... .+...+.. .+..+...|++++|...|+++.+..... +..++..+...|...|++++|..
T Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 160 RYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp HTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6531 12222211 1333336777777777777776643221 36667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
.++++.+.. +.+..++..+...|...|++++|...|+++.+.. ..+...|..+...|.+.|++++|.+.++++.+..
T Consensus 239 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 239 CFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777776653 3356667777777777777777777777766541 2235566777777777777777777777666421
Q ss_pred CCC---------C-hHh---HHHHHhhcCCHHHHHHHHH
Q 037477 545 YPP---------F-PEP---FVQYISKFGTVEDASEFLK 570 (639)
Q Consensus 545 ~~p---------~-~~~---~~~ll~~~g~~~~a~~~~~ 570 (639)
... . ... +..++...|+.++|..+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 100 0 122 2233356677777766654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-11 Score=131.60 Aligned_cols=451 Identities=13% Similarity=0.137 Sum_probs=311.1
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC--CCCHHHHH
Q 037477 92 KLTHESVVYVLRKLDNDPEKASAFFNWVCDK-KQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC--YIEEETYL 168 (639)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~ 168 (639)
+-++++-..+|.. .+ +.=+++.+|.... ..-.-++.--...++.|+..|.+.+|++++++..-.+- .-+...-+
T Consensus 950 r~d~~lW~~vl~~--~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqn 1026 (1630)
T 1xi4_A 950 RKDPELWGSVLLE--SN-PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQN 1026 (1630)
T ss_pred hcCHHHHHHHhcC--Cc-HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHH
Confidence 3455555555543 11 2234566664331 11224555556778899999999999999999984421 12234555
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHH
Q 037477 169 SILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVK 248 (639)
Q Consensus 169 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (639)
.++.+..+.. ...+.+.....-+ .....+-.++...|..+++...+++.+ .+.....++-+.-+.+++
T Consensus 1027 lLi~tAIkaD----~~Rv~eyI~kLd~-----~d~~eIA~Iai~lglyEEAf~IYkKa~---~~~~A~~VLie~i~nldr 1094 (1630)
T 1xi4_A 1027 LLILTAIKAD----RTRVMEYINRLDN-----YDAPDIANIAISNELFEEAFAIFRKFD---VNTSAVQVLIEHIGNLDR 1094 (1630)
T ss_pred HHHHHHHHhC----hhhHHHHHHHhhh-----ccHHHHHHHHHhCCCHHHHHHHHHHcC---CHHHHHHHHHHHHhhHHH
Confidence 5776666662 2222222222221 113345667777889999999999975 222223444434577899
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 037477 249 ALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM 328 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (639)
|.++.+++. +..+|..+..++.+.|++++|.+.|.+. -|...|..++.+|.+.|++++|.+.|....
T Consensus 1095 AiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1095 AYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998763 4778999999999999999999999663 388899999999999999999999999877
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 037477 329 DGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN 408 (639)
Q Consensus 329 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 408 (639)
+.. ++....+.+.-+|++.+. .+..... . ..++...|..+...|...|++++|..+|...
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~r--leele~f----I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNR--LAELEEF----I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcC--HHHHHHH----H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 654 333333347777777643 3332222 2 2345556777999999999999999999985
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
..|..+..+|++.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 1290 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHH
Confidence 37999999999999999999999876 3668999999999999999999886653 344667788999999
Q ss_pred HcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCC------C---hHhHHHHHh
Q 037477 489 LSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG--ARRLEEAMNLLRLMKKQNYPP------F---PEPFVQYIS 557 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p------~---~~~~~~ll~ 557 (639)
.+.|.+++|+.+++...... .-....|+-+...|++ -++..++.+.|..-. .++| + +.-+.-++.
T Consensus 1291 e~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHH
Confidence 99999999999998765431 2223455555555555 344555555544222 2322 1 233455567
Q ss_pred hcCCHHHHHH--------HHH-----HhhcCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHhhC
Q 037477 558 KFGTVEDASE--------FLK-----ALSVKEYPSSAAYLQVFESFFNEG---------------RHYEAKDLLYKC 606 (639)
Q Consensus 558 ~~g~~~~a~~--------~~~-----~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m 606 (639)
+.|+++.|.. .|+ .... ...+++.|...+..|...+ +++.+.+++++.
T Consensus 1367 ~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1367 KYEEYDNAIITMMNHPTDAWKEGQFKDIIT-KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred hcccHHHHHHHHHhccHhhhhhHHHHHHhc-ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 8899998872 222 2221 4568889988888888877 888888888863
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-11 Score=132.10 Aligned_cols=305 Identities=12% Similarity=0.066 Sum_probs=196.2
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1062 lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 456666777776541 12222233332 4566777766666442 46677777777777778888777
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
.|... -|...|.-+..++.+.+ +.+.+.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lG--kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSG--NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 77554 35556666666666655 4556666665544433 22222334777777777776543332 1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
.++...|..+...|...|++++|...|... ..|..+...|++.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 345556666777777777777777777763 36777777777777777777777665 2556777
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-HhH---HHHHhh
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EPF---VQYISK 558 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~---~~ll~~ 558 (639)
.+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.... +.+.. ..| ..++++
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 7777777777777777665432 22445778899999999999999999987764 33332 222 223333
Q ss_pred --cCCHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 559 --FGTVEDASEFLKALSVKEY-----PSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 559 --~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
-+++.++.++|..-....+ .+...|.-++..|.+.|+++.|...
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3566666666654443322 4678899999999999999999843
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-12 Score=134.86 Aligned_cols=409 Identities=7% Similarity=0.018 Sum_probs=239.5
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHH
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTL 206 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (639)
-+...|..++. +.+.|++++|..+|+++.+.- +-+...|...+..+.+.|+.+++ ..+++..+...+...++..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a---~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKV---EKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH---HHHHHHHTTTCCCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhcCCChHHHHHH
Confidence 47889999998 478899999999999998763 44667788888888887765544 34455554433221111111
Q ss_pred HHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHH----HHHHHHhccCCCCC-CHHHHHHHHHHHHc---
Q 037477 207 VDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKAL----GFFRWVGEHSGYKH-NTITYNGILRVLAR--- 278 (639)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~----~~f~~~~~~~~~~p-~~~~~~~li~~~~~--- 278 (639)
+. .+....++.+.|. ++|+......|..| +...|...+....+
T Consensus 86 ~~-----------------------------~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 86 LS-----------------------------YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HH-----------------------------HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred HH-----------------------------HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 11 0011112223333 35555544444443 34555555554443
Q ss_pred ------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHhhcCCCCCCHHHH
Q 037477 279 ------HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK-------------FRMMEDAVKLFEFMMDGPYKPSVQDC 339 (639)
Q Consensus 279 ------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (639)
.|+++.|.++|++..+....+....|......... .++++.|..++..+.
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~----------- 205 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE----------- 205 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHH-----------
Confidence 45666666666666552111111223222221100 111222222222110
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHhc--CCCCC--------hhhHHHHHHHHHc----cCCh----hHHHHHHHHHHH
Q 037477 340 SLLLRSISSINNPDLGLVFRVANKYESL--GNSLS--------KSVYDGIHRALTK----LGRF----DEAEKMMKAMKN 401 (639)
Q Consensus 340 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~li~~~~~----~g~~----~~A~~~~~~m~~ 401 (639)
.+...+... ...|+ ...|...+..... .++. ..+..+|++...
T Consensus 206 -------------------~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 206 -------------------TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp -------------------HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 000001000 01221 1234444332222 1232 366777887776
Q ss_pred CCCCCCHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCK-------AGRFE-------DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
.. +.+...|......+.+ .|+++ +|..+|++..+.-..-+...|..++..+.+.|++++|..+|+
T Consensus 267 ~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 267 VL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 53 4467778877777765 68876 888888888752122357788888888888999999999999
Q ss_pred HHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCC
Q 037477 468 KMMEKNYDAD--ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE-KLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 468 ~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
++++. .|+ ...|..++..+.+.|++++|..+|+...+.... +...|..... .+...|+.++|..+|+...+.
T Consensus 346 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~- 420 (530)
T 2ooe_A 346 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK- 420 (530)
T ss_dssp HHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-
T ss_pred HHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-
Confidence 98885 343 247888888888888899999999988764221 2222222221 133578899999999988763
Q ss_pred CCCCh-Hh---HHHHHhhcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 545 YPPFP-EP---FVQYISKFGTVEDASEFLKALSVKEYPS----SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 545 ~~p~~-~~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|+. .. +..++.+.|+.++|..+|++.....+.+ ...|...+......|+.+.+.++.+++
T Consensus 421 -~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp -HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2432 22 3334457799999999999888764333 447888888888889999998888775
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.1e-12 Score=131.10 Aligned_cols=340 Identities=11% Similarity=0.012 Sum_probs=272.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLAR----HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK----F 314 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 314 (639)
.++.++|+..|+...+. -+...+..|-..|.. .++.++|.+.|++..+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 46788899999888643 367788888888888 899999999999998876 67778888888888 7
Q ss_pred CCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCC
Q 037477 315 RMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN--NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK----LGR 388 (639)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 388 (639)
+++++|+..|+...+.| +...+..+-..+.... ..+...+...+....+.+ +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999988765 4555555555555422 456778888887777654 56777788888887 899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVD 460 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~ 460 (639)
.++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.+
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999998865 56778888888886 899999999999998864 56777778888888 89999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQ-----KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR---RLEE 532 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~ 532 (639)
+|.+.|++..+.| +...+..|-..|... +++++|...|+...+. + +...+..+-..|...| +.++
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHH
Confidence 9999999998876 566777788888887 8999999999999875 3 4557777777777766 7899
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHh
Q 037477 533 AMNLLRLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN----EGRHYEAKDLLY 604 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 604 (639)
|++.+++..+.|...-...+..++.. .++.++|..+|++..+. .++..+..|...|.. .+++++|.+.++
T Consensus 350 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999999987543323334444555 68999999999998875 368889999999998 899999999999
Q ss_pred hCCccc
Q 037477 605 KCPHHI 610 (639)
Q Consensus 605 ~m~~~~ 610 (639)
+.....
T Consensus 428 ~A~~~~ 433 (490)
T 2xm6_A 428 TASTND 433 (490)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 964443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=156.46 Aligned_cols=219 Identities=13% Similarity=0.157 Sum_probs=47.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.++.++|.++++++. +..+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+.
T Consensus 16 ~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 366788999998873 2349999999999999999999999652 488899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
+++...+. .+++.+.+.++.+|.+.++ ...+.+++ ..|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~--l~e~e~f~-------~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNR--LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------C--HHHHTTTT-------TCC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCC--HHHHHHHH-------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 77766553 3334445555555544431 22221111 1233344555555555555555555555443
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..+..-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 13455555555555555555555444 1344555555555555555555332222 111222233
Q ss_pred HHHHHHHcCCChhHHHHHHHHHH
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
.++..|.+.|.+++|..+++...
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 34444555555555555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-14 Score=137.48 Aligned_cols=269 Identities=12% Similarity=0.020 Sum_probs=188.6
Q ss_pred ccChHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNT--ITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 320 (639)
.|.+..|+..++... ...|+. ...-.+..+|...|+++.|...++. .-+|+..++..+...+...|+.++|
T Consensus 12 ~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 12 IGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp TTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 477778888777652 223432 3555677888888888888876644 2356777888888888888888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 321 VKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
++.++++...+..|+... .+..+..++...|++++|++.+++
T Consensus 85 ~~~l~~ll~~~~~P~~~~------------------------------------~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTT------------------------------------FLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp HHHHHHHHHSCCCCSCHH------------------------------------HHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred HHHHHHHHhcccCCCCHH------------------------------------HHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 888888876554454332 233355667788888888888876
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 037477 401 NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTW---TILIQGHCAANEVDRALLCFAKMMEKNYDAD 477 (639)
Q Consensus 401 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 477 (639)
+.+...+..+...|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCc
Confidence 4567778888888888888888888888887764 443211 122233344578888888888888873 557
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCChHhHHHHH
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEE-AMNLLRLMKKQNYPPFPEPFVQYI 556 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll 556 (639)
...++.+..++.+.|++++|...|++..+... -+..++..++..+...|+.++ +.++++++.+ ..|+......+.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d~~ 275 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 78888888888888888888888888777522 245577777777888888765 5678887776 457766666665
Q ss_pred hhcCCHHHHHH
Q 037477 557 SKFGTVEDASE 567 (639)
Q Consensus 557 ~~~g~~~~a~~ 567 (639)
.+.+.++++..
T Consensus 276 ~~~~~fd~~~~ 286 (291)
T 3mkr_A 276 AKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-13 Score=133.70 Aligned_cols=265 Identities=12% Similarity=0.031 Sum_probs=205.2
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+.+|+.+.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|++
T Consensus 34 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 578899999999886432 3477889999999999999999999999998874 4578889999999999999999999
Q ss_pred HHHHhhcCCCCCCHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHH-HH-HHHccCChhHHHHHHHHH
Q 037477 323 LFEFMMDGPYKPSVQ-DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI-HR-ALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 323 l~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~m 399 (639)
.++.+.+.. |+.. .+..+... .++......+ .. .+...|++++|.+.++++
T Consensus 111 ~~~~~~~~~--~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 111 SLRAWLLSQ--PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHTS--TTTTTC--------------------------------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 999987652 2211 11111000 0011111112 12 367788999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 400 KNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 400 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
.+.. +.+...+..+...|...|++++|...++++.+... .+..+|..+...+...|++++|...++++.+.. +.+..
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 8775 44778899999999999999999999999987653 367889999999999999999999999998875 44678
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-----------WQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
.+..+...|...|++++|...|++..+... .. +...|..+..++.+.|+.++|..++++.
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888999999999999999999998877521 11 3668888999999999999999988654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=133.74 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=73.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
++..+...+...|+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 34444445555555555555555554443323 233333444455555555555555544 13444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLL---DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 530 (639)
.+.|++++|.+.++++.+.. |+.... ..++..+...|++++|..+|+++.+.. ..+...|+.+..++.+.|++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCH
Confidence 55555555555555555442 221111 112222333455555555555555431 22344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 037477 531 EEAMNLLRLMKK 542 (639)
Q Consensus 531 ~~A~~~~~~m~~ 542 (639)
++|.+.+++..+
T Consensus 217 ~eA~~~l~~al~ 228 (291)
T 3mkr_A 217 EAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-12 Score=136.59 Aligned_cols=211 Identities=12% Similarity=-0.049 Sum_probs=93.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA---------- 456 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~---------- 456 (639)
|+.++|.+.+++..... +.+...+..+...|...|++++|...|++..+.... +..++..+...|...
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555554432 334444555555555555555555555555543321 334444444444321
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HH
Q 037477 457 ---------NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ--ATFKTLIE-KL 524 (639)
Q Consensus 457 ---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~-~~ 524 (639)
+..+.|...+++..+.. +.+...+..+...|...|++++|...|++..+. ...|.. ..+..+.. ..
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHH
Confidence 11334444444444432 222334444555555555555555555555443 111110 01111111 12
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
...|+.++|++.+++..+ +.|+...... ..+.+..++++.....|.++.+|..+..+|...|++++|++.|+
T Consensus 383 ~~~~~~~~Ai~~y~kal~--i~~~~~~~~~------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVK--INQKSREKEK------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HTSSCHHHHHHHHHHHHH--SCCCCHHHHH------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHCCCHHHHHHHHHHHHh--cCcccHHHHH------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555555555544 2333221111 12223334444444567888999999999999999999999999
Q ss_pred hCCcc
Q 037477 605 KCPHH 609 (639)
Q Consensus 605 ~m~~~ 609 (639)
+..+.
T Consensus 455 kALe~ 459 (472)
T 4g1t_A 455 RGLES 459 (472)
T ss_dssp -----
T ss_pred HHHhc
Confidence 96443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-14 Score=140.99 Aligned_cols=126 Identities=9% Similarity=0.057 Sum_probs=58.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
+...+...|++++|.+.|+++.+.... ++..++..+...|...|++++|...|+++.+... .+..+|..+...|...|
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGD 261 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 344455555555555555555444211 0344455555555555555555555555544322 13445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
++++|...++++.+.. +.+..++..+..+|.+.|++++|...|++..+
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555442 22344455555555555555555555554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.6e-14 Score=136.82 Aligned_cols=262 Identities=12% Similarity=-0.008 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037477 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH 380 (639)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 380 (639)
...+..+...+...|++++|+.+|+++.+.. | .+...+..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------------~~~~~~~~l~ 62 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--P------------------------------------EREEAWRSLG 62 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------------------------TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C------------------------------------CCHHHHHHHH
Confidence 3445667777888899999999888876531 1 1334466677
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----------
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL----------- 449 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l----------- 449 (639)
.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHH
Confidence 88889999999999999998874 456788899999999999999999999999876422 22222222
Q ss_pred ---HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037477 450 ---IQ-GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLL 525 (639)
Q Consensus 450 ---i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 525 (639)
.. .+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+.. ..+...|..+...+.
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLA 217 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 22 3677889999999999999875 4478889999999999999999999999998762 235778899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCC------------CHHHHHHHHHH
Q 037477 526 GARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYP------------SSAAYLQVFES 589 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~ 589 (639)
..|++++|.+.++++.+.. |+ ...+ ..++...|++++|...+++..+..|. +...|..+..+
T Consensus 218 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999999999988743 43 2222 33446889999999999999877655 68899999999
Q ss_pred HHhcCCHHHHHHHHhhCC
Q 037477 590 FFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 590 ~~~~g~~~~A~~~~~~m~ 607 (639)
|.+.|++++|..++++..
T Consensus 296 ~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHTTCCS
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 999999999999998753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-14 Score=141.19 Aligned_cols=231 Identities=12% Similarity=-0.036 Sum_probs=188.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
+...+..+...+.+.|++++|.+.|+++.+.. +.+...|..+...|...|++++|...|+++.+... .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34457788889999999999999999998875 55788999999999999999999999999988653 36889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYD---------ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
.|...|++++|...++++.+.... .....+..+...|...|++++|..+|+++.+...-.++...|..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999885311 01233445678899999999999999999987443336889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (639)
.|...|++++|++.++++.+. .|+ ...+ ..++...|++++|...|++..+..|.+..+|..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999874 343 3333 3344688999999999999999889999999999999999999999
Q ss_pred HHHHHhhC
Q 037477 599 AKDLLYKC 606 (639)
Q Consensus 599 A~~~~~~m 606 (639)
|.+.+++.
T Consensus 300 A~~~~~~a 307 (365)
T 4eqf_A 300 AVSNFLTA 307 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-12 Score=119.42 Aligned_cols=229 Identities=10% Similarity=0.014 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP--YKPSVQDCSLLL 343 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll 343 (639)
...|..+...+...|++++|...|++..+.. .+...|..+...|...|++++|+..++...+.. ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 4577888889999999999999999999887 788999999999999999999999999876421 000000
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
....++..+...|...|++++|.+.|++..+. .|+. ..+.+.|+
T Consensus 77 ---------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 77 ---------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRN 120 (258)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhH
Confidence 01345777888999999999999999999876 3443 34667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+++|...++++...... +...+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...|+.
T Consensus 121 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999875422 45678888999999999999999999999875 44688899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 504 MIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 504 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
..+.. ..+...|..+...+.+.|++++|.+.+++..+
T Consensus 199 al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 199 AIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98762 23477888889999999999999999998876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-12 Score=122.26 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI--PD----IKTWT 447 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~t~~ 447 (639)
..+..+...+...|++++|.+.|++..+.. .+...|..+..+|...|++++|...+++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356778889999999999999999999887 78889999999999999999999999998764321 22 57899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLG 526 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 526 (639)
.+...|...|++++|...+++..+.. |+. ..+.+.|++++|...++.+... .| +...|..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999864 443 3466678899999999998764 23 35678888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 527 ARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
.|++++|.+.+++..+.. |+ ...+ ..++...|++++|...+++..+..|.+...|..+..+|.+.|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998743 33 2222 33346889999999999999998889999999999999999999999999
Q ss_pred HhhCCc
Q 037477 603 LYKCPH 608 (639)
Q Consensus 603 ~~~m~~ 608 (639)
+++...
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-12 Score=117.43 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=123.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
+++...+..+...+.+.|++++|...|++..+.... +...|..+...+.+.|++++|...+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345555666666666666666666666666654432 55666666666666677777777666666654 3345566666
Q ss_pred HHHHHcC-----------CChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH
Q 037477 485 INGFLSQ-----------KRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF 552 (639)
Q Consensus 485 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 552 (639)
...|... |++++|...|++..+. .| +...|..+-..+...|++++|++.|++..+.. .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 6666666 7888888888777765 33 35567777777788888888888888877654 333322
Q ss_pred ---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 553 ---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 553 ---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
..++...|++++|...|++..+..|.+...+..+..++.+.|++++|.+.+++.-
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3334577888888888888888888888899999999999999999998888754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-12 Score=116.33 Aligned_cols=199 Identities=16% Similarity=0.083 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
+++...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++..+. .|+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~----- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYL----- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcH-----
Confidence 5677888999999999999999999999998874 557889999999999999999999999988764 23321
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-----------CChhHHHHHHHHHHHCCCCCCHHhH
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL-----------GRFDEAEKMMKAMKNAGFEPDNITY 411 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~ 411 (639)
..+..+..++... |++++|...|++..+.. +-+...|
T Consensus 74 -------------------------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~ 121 (217)
T 2pl2_A 74 -------------------------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLH 121 (217)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -------------------------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 1222333333333 66777777777666553 2345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
..+...|...|++++|+..|++..+.. .+...+..+...|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 666666667777777777777766655 466666666666667777777777776666653 33455666666666666
Q ss_pred CChhHHHHHHHHH
Q 037477 492 KRVNGAYKLLVEM 504 (639)
Q Consensus 492 g~~~~A~~~~~~m 504 (639)
|++++|...|++.
T Consensus 199 g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 199 GKAEEAARAAALE 211 (217)
T ss_dssp -------------
T ss_pred cCHHHHHHHHHHH
Confidence 6666666666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-11 Score=116.49 Aligned_cols=247 Identities=13% Similarity=-0.009 Sum_probs=180.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+......+...|++++|...|++..+.. +.+...+..+...|...|++++|+..++...+.+-.|+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 71 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK------------ 71 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh------------
Confidence 45556677888999999999999988764 33555788888899999999999999988876321111
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDA 427 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 427 (639)
.....|..+...|...|++++|.+.|+...+.. +.+...|..+...|...|++++|
T Consensus 72 -----------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 72 -----------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHH
Confidence 112235667778888899999999999888764 34567888888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHH
Q 037477 428 CNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR---VNGAYKLLVEM 504 (639)
Q Consensus 428 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m 504 (639)
...|++..+... .+...|..+...+...+++++|.+.+++..+.. +.+...+..+..++...|+ +++|...|++.
T Consensus 128 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999988877632 256677777634445569999999999888864 3346677777777777777 77888888887
Q ss_pred HHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 037477 505 IEKVRLRPW------QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQY 555 (639)
Q Consensus 505 ~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (639)
.+...-.|+ ...|..+...|.+.|++++|.+.+++..+ +.|+.......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~ 260 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDG 260 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 765322333 24667777778888888888888888776 34554444333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-11 Score=113.78 Aligned_cols=223 Identities=10% Similarity=0.003 Sum_probs=187.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+...+..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445667788889999999999999999883 356778888899999 999999999999999875 788899
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 448 ILIQGHCA----ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 448 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+...|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|++..+. + +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHH
Confidence 99999999 999999999999999886 77888889899998 99999999999999875 3 5667778
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 520 LIEKLLG----ARRLEEAMNLLRLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 520 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
+...|.. .+++++|.+.+++..+.+.......+..++.. .++.++|...|++..+.. +...+..+...|.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 8888887 89999999999999887532222334445556 899999999999988774 3788889999999
Q ss_pred h----cCCHHHHHHHHhhCCcc
Q 037477 592 N----EGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 592 ~----~g~~~~A~~~~~~m~~~ 609 (639)
. .|++++|.+.+++....
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 9 99999999999986433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-11 Score=115.17 Aligned_cols=199 Identities=8% Similarity=-0.054 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
..+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|...|+++.+.... +...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 445555555666666666666666555443 234455555555555666666666666555544321 445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 532 (639)
...|++++|.++++++.+.+..| +...+..+...|...|++++|...|++..+.. ..+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555422222 23444445555555555555555555554431 1123444444444555555555
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 533 AMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
|.+.++ ++.+..+.+...+..+...|.+.|++++|.++++++..
T Consensus 194 A~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYD--------------------------------LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHH--------------------------------HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--------------------------------HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555544 44444444555555555555555555555555555433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-11 Score=113.07 Aligned_cols=201 Identities=9% Similarity=-0.038 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.. |
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~----------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--S----------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-----------
Confidence 5667777788888888888888888887763 4467777788888888888888888887765421 1
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-DNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~ 424 (639)
.+..++..+...|...|++++|.+.++++.+.+..| +...+..+...|...|++
T Consensus 103 -------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 103 -------------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred -------------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH
Confidence 122334555666666777777777777766522233 344556666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
++|...|++..+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+
T Consensus 158 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 158 AQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777766665432 245566666666666666666666666666543 334555566666666666666666666666
Q ss_pred HHh
Q 037477 505 IEK 507 (639)
Q Consensus 505 ~~~ 507 (639)
.+.
T Consensus 236 ~~~ 238 (252)
T 2ho1_A 236 KRL 238 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-11 Score=109.77 Aligned_cols=203 Identities=14% Similarity=0.044 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
+...|..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.|+.+.+.. |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~---------- 73 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--P---------- 73 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C----------
Confidence 45667777778888888888888888877653 3457777778888888888888888887765421 1
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL-GRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKAG 422 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 422 (639)
.+..++..+...|... |++++|.+.++.+.+.+..|+ ...+..+...+...|
T Consensus 74 --------------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 74 --------------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp --------------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred --------------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 1223455566677777 777777777777776222232 456666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
++++|...|+++.+.... +...+..+...+...|++++|...++++.+.....+...+..+...+...|+.++|..+++
T Consensus 128 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 777777777777665422 4666777777777777777777777777665421455666666666677777777777777
Q ss_pred HHHHh
Q 037477 503 EMIEK 507 (639)
Q Consensus 503 ~m~~~ 507 (639)
.+.+.
T Consensus 207 ~~~~~ 211 (225)
T 2vq2_A 207 QLQAN 211 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-12 Score=119.76 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=135.0
Q ss_pred cCCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCch
Q 037477 278 RHESVRDFWNVVEEMKKEGY---EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDL 354 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 354 (639)
..|++++|.+.|+++.+... +.+..+|..+...+...|++++|+..|++..+.. |
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~-------------------- 74 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--P-------------------- 74 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--------------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--C--------------------
Confidence 34566666666666665421 1134556666666666666666666666654320 1
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 355 GLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEM 434 (639)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (639)
.+..++..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|...|+++
T Consensus 75 ----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 75 ----------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp ----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 122334455556666666666666666666543 234556666666777777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-
Q 037477 435 EENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW- 513 (639)
Q Consensus 435 ~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~- 513 (639)
.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...++...+. .|.
T Consensus 138 ~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 210 (275)
T 1xnf_A 138 YQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSL 210 (275)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHH
T ss_pred HHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccc
Confidence 6543 333333334444455567777777776666543 2233333 2455555666666666666655332 121
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHhhcCCHHHHHHHH
Q 037477 514 ----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP-FPEPFVQYISKFGTVEDASEFL 569 (639)
Q Consensus 514 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~g~~~~a~~~~ 569 (639)
...|..+...|.+.|++++|...+++..+. .| +...+...+...|++++|.+.+
T Consensus 211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCHHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHhhHHHH
Confidence 345666666666677777777777666653 23 3333444444555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-10 Score=119.51 Aligned_cols=322 Identities=11% Similarity=-0.001 Sum_probs=195.3
Q ss_pred ccChHHHHHHHHHHhcc----CC-CCC-CHHHHHHHHHHHHcC--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---H
Q 037477 243 RIYPVKALGFFRWVGEH----SG-YKH-NTITYNGILRVLARH--ESVRDFWNVVEEMKKEGYEMDIDTYIKISRQ---F 311 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~----~~-~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~ 311 (639)
.++.++|...|+...+- .+ ..+ ...+++.+..++.+. +++++|.+.|++..+.. +-+...+..+..+ +
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRL 185 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 58899999999887421 11 122 345666665555554 56899999999988764 3345555555444 4
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 037477 312 QKFRMMEDAVKLFEFMMDGPYKPS-VQDCSLLLRSISSIN--NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR 388 (639)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 388 (639)
...++.++|++.+++..+. .|+ ...+..+-..+...+ ..+...+...+....... +.+..++..+...|...|+
T Consensus 186 ~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 4567888899999887764 343 444444444444433 234556777776665543 3356678889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA-------------------GRFEDACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
+++|.+.+++..+.. +-+..++..+...|... +.+++|...|++..+.... +..++..+
T Consensus 263 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHH
T ss_pred hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhH
Confidence 999999999998774 34566777777777542 2356788888887765432 45678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 450 IQGHCAANEVDRALLCFAKMMEKNYDADAD--LLDVLIN-GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
...|...|++++|.+.|++.++....+... .+..+.. .+...|++++|+..|++..+. .|+.......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~------ 411 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH------
Confidence 999999999999999999999875433221 2222222 345789999999999998764 5553332222
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHh---HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHH
Q 037477 527 ARRLEEAMNLLRLMKKQNYPPFPEP---FVQYISKFGTVEDASEFLKALSVKEYPSSAAY 583 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~ 583 (639)
...+.++++...+.. +.+..+ +..++...|+.++|++.|++..+..+.++..+
T Consensus 412 ---~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp ---HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred ---HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 233445555554422 112222 34445678999999999999988754444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-11 Score=111.23 Aligned_cols=166 Identities=9% Similarity=-0.033 Sum_probs=87.7
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|...|++++|...++++.+... .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3445555556666666666666666555543 23345555555556666666666666665554432 144555555555
Q ss_pred HHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037477 453 HCAA-NEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 453 ~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 530 (639)
|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...|+++.+.. ..+...+..+...+.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 5555 666666666655555211222 3445555555555555555555555555431 11244455555555555555
Q ss_pred HHHHHHHHHHHh
Q 037477 531 EEAMNLLRLMKK 542 (639)
Q Consensus 531 ~~A~~~~~~m~~ 542 (639)
++|.+.++++.+
T Consensus 164 ~~A~~~~~~~~~ 175 (225)
T 2vq2_A 164 GDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-11 Score=115.84 Aligned_cols=216 Identities=12% Similarity=-0.069 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHHHCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGF---EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
.|++++|.+.|+++.+... +.+...|..+...|...|++++|...|+++.+.... +..+|..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 4566666666666665421 112445566666666666666666666666654322 456666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...+++.++.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666666653 224556666666666666666666666666554 23333333333344555666666666655554
Q ss_pred CCC-CCChHhHHHHHhhcCCHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 543 QNY-PPFPEPFVQYISKFGTVEDASEFLKALSVKEY----PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 543 ~~~-~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
... .+........+...++.++|...+++.....+ .+...|..+...|.+.|++++|.+.+++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 211 11111122222344555666666666555422 12456666666666666666666666664
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-10 Score=106.96 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK----FRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
+..++..+...|...|++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 56677777788888888888888888888743 56777778888888 888888888888776542
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK----LGRFDEAEKMMKAMKNAGFEPDNITYSQVIF 416 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 416 (639)
+...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 73 -------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 118 (273)
T 1ouv_A 73 -------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGG 118 (273)
T ss_dssp -------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHH
Confidence 12234445555666 788888888888877764 5667777777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 417 GLCK----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 417 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 192 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMY 192 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7877 888888888888877764 55667777777777 788888888888877764 456666777777
Q ss_pred Hc----CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 037477 489 LS----QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG----ARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 489 ~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 544 (639)
.. .+++++|...|+...+. + +...+..+...|.+ .+++++|.+.+++..+.+
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77 78888888888877764 2 24566666677777 777788888887777644
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=114.70 Aligned_cols=207 Identities=15% Similarity=0.067 Sum_probs=104.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34455566666666777777777777666543 33456666666666677777777777766665432 24566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ..+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666653 3345556666666666666666666666665541 123445555555566666666
Q ss_pred HHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 037477 532 EAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQ 585 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 585 (639)
+|.+.++++.+.. |+ ...+ ..++...|+.++|...++++.+..|.+...+..
T Consensus 177 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 177 EALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 6666665555421 21 1111 112234455555555555544444444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-11 Score=113.92 Aligned_cols=213 Identities=15% Similarity=0.085 Sum_probs=155.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
......|..+...+...|++++|...|+++.+... .+...+..+...|...|++++|.+.++++.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 34556778888889999999999999999987653 367889999999999999999999999998875 4477888899
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcC
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFG 560 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g 560 (639)
...|...|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++++.+.. |+ ...+ ..++...|
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcC
Confidence 999999999999999999998762 3356788888999999999999999999988742 33 2222 33346789
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhcc
Q 037477 561 TVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSA 623 (639)
Q Consensus 561 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~ 623 (639)
++++|...++++.+..+.+...|..+..+|.+.|++++|.+.+++........+.....++..
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 999999999999888888899999999999999999999999999765555555555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-11 Score=112.69 Aligned_cols=241 Identities=9% Similarity=-0.027 Sum_probs=183.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP--DIKTWTILIQG 452 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~ 452 (639)
.+......+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+++..+.+..| ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556778899999999999999998874 3355588889999999999999999999998843222 23458899999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~ 531 (639)
|...|++++|.+.+++..+.. +.+..++..+...|...|++++|...|++..+. .| +...|..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 346678999999999999999999999988654 34 4566666663444556999
Q ss_pred HHHHHHHHHHhCCCCCChH-hH---HHHHhhcCC---HHHHHHHHHHhhcCC---CC-----CHHHHHHHHHHHHhcCCH
Q 037477 532 EAMNLLRLMKKQNYPPFPE-PF---VQYISKFGT---VEDASEFLKALSVKE---YP-----SSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~---~~~a~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~g~~ 596 (639)
+|.+.++++.+. .|+.. .+ ..++...|+ .++|...+++..+.. +. ....|..+...|.+.|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999873 34432 22 222334466 777888888877652 22 136888899999999999
Q ss_pred HHHHHHHhhCCccccCChhHHHhhhc
Q 037477 597 YEAKDLLYKCPHHIRQDSKISLLFGS 622 (639)
Q Consensus 597 ~~A~~~~~~m~~~~~~~~~~~~l~~~ 622 (639)
++|.+.+++.....+.++.....+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 99999999975544555554444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-09 Score=111.29 Aligned_cols=204 Identities=9% Similarity=-0.030 Sum_probs=105.4
Q ss_pred ChhhHHHHHHHHHccCChhHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC
Q 037477 372 SKSVYDGIHRALTKLGRFDEAE-KMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG---------CIP 441 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p 441 (639)
...+|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|++++|..+|+++.+.. -.|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4445555555555566666664 666666543 23344445556666666666666666666665421 012
Q ss_pred C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHh
Q 037477 442 D------------IKTWTILIQGHCAANEVDRALLCFAKMMEK-NYDADADLLDVLINGFLSQ-KRVNGAYKLLVEMIEK 507 (639)
Q Consensus 442 ~------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 507 (639)
+ ...|...+....+.|+.+.|..+|.+.++. + ......|......-.+. ++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 224555555555666666666666666654 2 11122222222222222 3366666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h-HhHH---HHHhhcCCHHHHHHHHHHhhcCCCCC
Q 037477 508 VRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF-P-EPFV---QYISKFGTVEDASEFLKALSVKEYPS 579 (639)
Q Consensus 508 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~---~ll~~~g~~~~a~~~~~~~~~~~~~~ 579 (639)
++- +...|...++.....|+.+.|..+|++.......+. . ..|. .+-...|+.+.+..+.+++.+..|.+
T Consensus 500 ~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 FAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred CCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 322 333445555555556666666666666665332111 1 1122 22245566666666666666654433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=114.56 Aligned_cols=231 Identities=9% Similarity=0.122 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM-MEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
+...|+.+...+.+.|++++|++.+++..+.. +-+...|+.+..++...|+ +++|+..|++..+. .|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P--------- 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QP--------- 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CT---------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CC---------
Confidence 45677888888889999999999999998874 4467888899999999996 99999999888653 11
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
-+...|..+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|+
T Consensus 164 ---------------------------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 164 ---------------------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred ---------------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC
Confidence 123456666777777888888888888888765 4467788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--Chh
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCA-ANEVDRA-----LLCFAKMMEKNYDADADLLDVLINGFLSQK--RVN 495 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~ 495 (639)
+++|+..|+++.+.... +...|+.+..++.. .|..++| ++.+++.++.. +-+...|+.+...+.+.| +++
T Consensus 216 ~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchH
Confidence 88888888888876544 67788888888887 5554666 47777777754 335667777777777777 577
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 037477 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR---------RLEEAMNLLRLM 540 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 540 (639)
+|++.+.++ + ....+...+..+...|.+.| ..++|+++++++
T Consensus 294 ~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 294 NLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 777777776 2 22334556666766666653 235666666665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-10 Score=113.93 Aligned_cols=225 Identities=11% Similarity=0.041 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR-FEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
..|..+...+.+.|++++|++.+++..+.. +-+...|+.+...+...|+ +++|+..|++..+.... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 457777888899999999999999999875 4467889999999999997 99999999999987654 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG-ARRLE 531 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 531 (639)
+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++.+.. .-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999976 4478899999999999999999999999999862 2256788888888888 66657
Q ss_pred HH-----HHHHHHHHhCCCCCChH-hH---HHHHhhcC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC------
Q 037477 532 EA-----MNLLRLMKKQNYPPFPE-PF---VQYISKFG--TVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG------ 594 (639)
Q Consensus 532 ~A-----~~~~~~m~~~~~~p~~~-~~---~~ll~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 594 (639)
+| ++.+++..+ +.|+.. .+ ..++...| +.++|.+.+.++ +..+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 588888877 445543 22 33445666 689999999998 778889999999999999874
Q ss_pred ---CHHHHHHHHhhC
Q 037477 595 ---RHYEAKDLLYKC 606 (639)
Q Consensus 595 ---~~~~A~~~~~~m 606 (639)
..++|++++++.
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 358999999997
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-11 Score=121.79 Aligned_cols=219 Identities=14% Similarity=0.058 Sum_probs=158.7
Q ss_pred hHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 375 VYDGIHRALTKLG---RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA----GRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 375 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
.+..+...|...| +.++|.+.|+...+.| .++...+..+...|... +++++|...|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5666777788888 8999999999999887 56666666677777654 79999999999988 43 445666
Q ss_pred HHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 448 ILIQG-H--CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK-----RVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 448 ~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+... | ...++.++|.+.|++..+.| +...+..|-..|. .| ++++|...|+... . -+...+..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~ 323 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYY 323 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHH
Confidence 66665 3 46889999999999999887 6677777777776 44 8999999998765 2 24556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHh----hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 520 LIEKLLG----ARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS----KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 520 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
|-..|.. ..+.++|...|++..+.|...-...+..++. ...+.++|..+|+...+...+........+....
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPL 403 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6666665 3489999999999998876444444444443 2458999999999988775444443333333333
Q ss_pred hcCCHHHHHHHHhhCC
Q 037477 592 NEGRHYEAKDLLYKCP 607 (639)
Q Consensus 592 ~~g~~~~A~~~~~~m~ 607 (639)
..++.++|..+.++..
T Consensus 404 ~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 404 TPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4456777888877753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=118.42 Aligned_cols=234 Identities=13% Similarity=0.067 Sum_probs=170.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNA-------GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN------GC 439 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~ 439 (639)
..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788889999999999999999998863 22334567888999999999999999999998754 21
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---
Q 037477 440 IP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK------NYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV--- 508 (639)
Q Consensus 440 ~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 508 (639)
.| ...++..+...|...|++++|.+.+++..+. +..| ....+..+...|...|++++|..+|++..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3567888999999999999999999998874 2222 34567788889999999999999999887641
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChHh---HHHHH-------hhcCCHHHHHHH
Q 037477 509 --RLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ-------NYPPFPEP---FVQYI-------SKFGTVEDASEF 568 (639)
Q Consensus 509 --~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~---~~~ll-------~~~g~~~~a~~~ 568 (639)
+..| ....+..+...|...|++++|.+.++++.+. ...+.... ....+ ...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2457888899999999999999999998752 11121111 11111 234566666777
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 569 LKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
++......+....+|..+..+|.+.|++++|.+++++.
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777666778889999999999999999999999874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-11 Score=119.83 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD----IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (639)
......+......+...|++++|...|++..+.+ +.+ ...|..+...|...|++++|...+++..+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 76 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-------- 76 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------
Confidence 4456677778888899999999999999988864 223 357888888999999999999998877531
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCC----HHhHH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSL-SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF-EPD----NITYS 412 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 412 (639)
+.. .+..+ ...++..+...|...|++++|...+++..+... .++ ..++.
T Consensus 77 -------~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 77 -------ART------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp -------HHH------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------HHh------------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 000 00001 123466677888899999999998887764310 012 34677
Q ss_pred HHHHHHHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 413 QVIFGLCKAGR--------------------FEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 413 ~li~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
.+...|...|+ +++|...+.+..+. +-.| ...++..+...|...|++++|...++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888889999 99999888876532 1111 23467888888999999999999999
Q ss_pred HHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 468 KMMEKNY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 468 ~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
+..+... .++ ..++..+...|...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 8876311 112 236777888899999999999999887653211122 4577788888999999999999998
Q ss_pred HHHhC----CCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHhcCCHH
Q 037477 539 LMKKQ----NYPPFPE----PFVQYISKFGTVEDASEFLKALSVK------EYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 539 ~m~~~----~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
+..+. +..+... .+..++...|++++|...+++..+. .+....++..+...|...|+..
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 87652 1111111 1233345779999999998887654 1223556777888888777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.5e-11 Score=119.49 Aligned_cols=243 Identities=11% Similarity=0.013 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDI----DTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
....+..+...+...|++++|...|++..+.+ +.+. ..|..+...|...|++++|+..|++..+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------- 115 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL---------- 115 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------
Confidence 34555666778888999999999999988864 2233 46788888888999999999988877531
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHC----CC-CCCHHhHHHH
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGN-SLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA----GF-EPDNITYSQV 414 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l 414 (639)
+. ..+. .....++..+...|...|++++|.+.+++..+. +- .....++..+
T Consensus 116 -----~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 116 -----AK------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp -----HH------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HH------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 00 0111 112346777788888888888888888876543 10 1123456667
Q ss_pred HHHHHhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 415 IFGLCKAGR-----------------FEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 415 i~~~~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
...|...|+ +++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777777 77777777665431 1111 1235666666677777777777777666552
Q ss_pred CC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 473 NY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 473 g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.. ..+ ..++..+...|...|++++|...|++..+...-..+ ..++..+...|...|++++|.+.+++..
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10 011 124555666666667777777666665543111111 3345555556666666666666665554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-09 Score=96.24 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=137.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
+..+|..+...|...|++++|.+.|++..+.. +-+...|..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45678888889999999999999999988775 446778888889999999999999999988876543 6677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
.+...++++.|...+.+..+.. +-+...+..+...|.+.|++++|+..|++..+.. .-+...|..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999888864 4467788888889999999999999999888762 224667888888899999999
Q ss_pred HHHHHHHHHHh
Q 037477 532 EAMNLLRLMKK 542 (639)
Q Consensus 532 ~A~~~~~~m~~ 542 (639)
+|++.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998877
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.1e-11 Score=114.73 Aligned_cols=246 Identities=12% Similarity=0.039 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKE-------GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|+..+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 5678899999999999999999999998873 22445677889999999999999999999887542
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC------CCCC-CHHh
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA------GFEP-DNIT 410 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~ 410 (639)
..............++..+...|...|++++|.+.+++..+. +-.| ....
T Consensus 99 -----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 99 -----------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp -----------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 000000011122346777889999999999999999998764 2122 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEEN------GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK-------NYDA 476 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~ 476 (639)
+..+...|...|++++|...|+++.+. +-.| ...++..+...|...|++++|.+.++++.+. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 788889999999999999999998764 2122 3457888999999999999999999998863 1111
Q ss_pred C-------HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 477 D-------ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 477 ~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
. ...+..+...+...+.+.++...+...... -.....++..+...|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 122233334445556666777777766543 122356788888999999999999999998765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-10 Score=115.97 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHH
Q 037477 300 DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI 379 (639)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (639)
....+..+...+...|++++|+..|++..+. .|+..... ..++..+
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~--------------------------------~~~~~~l 92 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTL--------------------------------SAIYSQL 92 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHH--------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHH--------------------------------HHHHHHH
Confidence 4555666777888999999999999998875 23211100 0124456
Q ss_pred HHHHHccCChhHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNA----GF-EPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN----GCI-PDIKTWTIL 449 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~l 449 (639)
...|...|++++|.+.+++..+. +- ......+..+...|...|++++|...+++..+. +-. ....++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 77788889999999988877543 21 223456788888899999999999999887643 111 134578888
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 450 IQGHCAANE-----------------VDRALLCFAKMMEK----NYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 450 i~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
...|...|+ +++|.+.+++..+. +..+ ...++..+...|...|++++|...|++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888999999 99999988887652 2111 2346777888899999999999999887653
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh----H---hHHHHHhhcCCHHHHHHHHHHhhcC
Q 037477 508 VRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFP----E---PFVQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 508 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~----~---~~~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
..-.++ ...+..+...|...|++++|.+.+++..+.... .+. . .+..++...|++++|..++++....
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222233 347788888899999999999999887652110 111 1 2233346789999999999887654
Q ss_pred C------CCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 576 E------YPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 576 ~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
. ......+..+..+|.+.|++++|.+.+++.
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 112457888899999999999999998873
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-10 Score=115.89 Aligned_cols=275 Identities=12% Similarity=0.003 Sum_probs=201.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
......+......+...|++++|+..|++..+. .|+.... -..++.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~--------------------------------~~~~~~ 51 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKT--------------------------------LSAIYS 51 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH--------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHH--------------------------------HHHHHH
Confidence 446677788888999999999999999988764 1211000 012466
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNA----GFEP-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWT 447 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~ 447 (639)
.+...|...|++++|...+++.... +-.| ....+..+...|...|++++|...+++..+.... ++ ..++.
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 6778889999999999999886543 2122 2456788889999999999999999987653110 12 44788
Q ss_pred HHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 448 ILIQGHCAANE--------------------VDRALLCFAKMMEK----NYDA-DADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 448 ~li~~~~~~g~--------------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
.+...|...|+ +++|...+++..+. +..+ ...++..+...|...|++++|...++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88899999999 99999999887652 1111 23467788889999999999999999
Q ss_pred HHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChH-------hHHHHHhhcCCHHHHHHHHH
Q 037477 503 EMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-PPFPE-------PFVQYISKFGTVEDASEFLK 570 (639)
Q Consensus 503 ~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~-------~~~~ll~~~g~~~~a~~~~~ 570 (639)
+..+...-.++ ...|..+...|...|++++|...+++..+... .++.. .+..++...|++++|...++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 88754222233 34788888999999999999999998775211 11111 12333467899999999999
Q ss_pred HhhcCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 571 ALSVKE--YPS----SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 571 ~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+..+.. ..+ ..++..+..+|.+.|++++|.+.+++.
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887651 112 667889999999999999999998884
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-09 Score=99.99 Aligned_cols=219 Identities=9% Similarity=0.058 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 037477 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQK-------FRMM-------EDAVKLFEFMMDGPYKPSVQDCSLLLRSISS 348 (639)
Q Consensus 283 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 348 (639)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++..+. +.|
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p-------------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-------------- 96 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTT--------------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCc--------------
Confidence 67888888888753 4577788888777753 4775 7888888877652 112
Q ss_pred cCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HH-hHHHHHHHHHhcCCHHH
Q 037477 349 INNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-NI-TYSQVIFGLCKAGRFED 426 (639)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~ 426 (639)
.+...|..++..+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++
T Consensus 97 ----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 97 ----------------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred ----------------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHH
Confidence 12335667777888899999999999999875 443 33 78889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 427 ACNVLDEMEENGCIPDIKTWTILIQGHC-AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 427 A~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
|..+|++..+... ++...|........ ..|+.++|..+|++.++.. +-+...|..++..+.+.|++++|..+|++..
T Consensus 153 A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 153 GRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987653 24455544433322 3699999999999988863 3467888888889999999999999999988
Q ss_pred HhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 506 EKVRLRP--WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 506 ~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
....+.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7533454 3668888888888899999999999988863
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-10 Score=110.21 Aligned_cols=279 Identities=13% Similarity=0.062 Sum_probs=174.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMD----IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
.+......+...|++++|...|+++.+.. +.+ ...+..+...|...|++++|++.+++..+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 72 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------- 72 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------
Confidence 44555677889999999999999998864 223 467888899999999999999999877531
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCC----HHhHHHHHHH
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF-EPD----NITYSQVIFG 417 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~ 417 (639)
... .+.. ....++..+...|...|++++|.+.+++..+... .++ ..++..+...
T Consensus 73 --~~~------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 73 --ART------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp --HHH------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hhc------------------ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 000 0000 1123466678888889999999998888654310 112 3367777788
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 418 LCKAGR--------------------FEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 418 ~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
|...|+ +++|...+++.... +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888 88888888775431 1111 1345667777778888888888888777652
Q ss_pred CC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 473 NY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 473 g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.. .++ ..++..+...|...|++++|...+++..+...-..+ ..++..+...|...|++++|.+.+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 10 011 225566666777777777777777766543111111 345555566666666666666666655431
Q ss_pred CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 544 NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 544 ~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
. +. .++ .+....++..+...|.+.|++++|.+.+++.
T Consensus 293 ~--~~----------~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 293 A--QE----------LKD--------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp H--HH----------HTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H--Hh----------cCC--------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 00 000 0011335556666677777777777766653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-09 Score=101.20 Aligned_cols=220 Identities=7% Similarity=-0.001 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-------cCCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 247 VKALGFFRWVGEHSGYKHNTITYNGILRVLA-------RHESV-------RDFWNVVEEMKKEGYEMDIDTYIKISRQFQ 312 (639)
Q Consensus 247 ~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 312 (639)
++|+..|++..+.. +.+...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46777887775432 346778888887775 45886 899999999997322446778999999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhH
Q 037477 313 KFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKS-VYDGIHRALTKLGRFDE 391 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~ 391 (639)
+.|++++|..+|++..+. .|+. .. +|..+...+.+.|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~------------------------------------~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDID------------------------------------PTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSC------------------------------------THHHHHHHHHHHHHHHCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccC------------------------------------ccHHHHHHHHHHHHhcCHHH
Confidence 999999999999998763 2221 11 46667777888899999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLC-KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
|.++|++..+.. +.+...|........ ..|++++|..+|++..+.... +...|..++..+.+.|++++|..+|++.+
T Consensus 153 A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 153 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998764 334455544433322 369999999999998875432 67889999999999999999999999999
Q ss_pred HcC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 471 EKN-YDA--DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 471 ~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
+.. +.| ....|..++..+.+.|+.+.|..+++++.+..
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 863 454 46788888999999999999999999998763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.2e-10 Score=114.90 Aligned_cols=210 Identities=10% Similarity=0.004 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF-EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
++++.+.++...... +.+...+..+...|...|++ ++|+..|++..+.... +...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655442 34677778888888888888 8888888888776432 57788888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcC---------CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCH
Q 037477 468 KMMEKNYDADADLLDVLINGFLSQ---------KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA--------RRL 530 (639)
Q Consensus 468 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~ 530 (639)
+.++.. |+...+..+...|... |++++|...|++..+.. .-+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888763 6677788888888888 88888888888887752 22466788888888887 889
Q ss_pred HHHHHHHHHHHhCCCCC----ChHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 531 EEAMNLLRLMKKQNYPP----FPEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 531 ~~A~~~~~~m~~~~~~p----~~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
++|++.|++..+. .| +...+ ..++...|++++|...|++..+..|.+...+..+..++...|++++|++.+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888873 34 22222 333467799999999999988888889999999999999999999999877
Q ss_pred hhC
Q 037477 604 YKC 606 (639)
Q Consensus 604 ~~m 606 (639)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 776
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-10 Score=110.58 Aligned_cols=267 Identities=10% Similarity=-0.002 Sum_probs=193.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcC
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHN--TITYNGILRVLARHESVRDFWNVVEEMKKE----GYE-MDIDTYIKISRQFQKFR 315 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g 315 (639)
.+++++|+..|+.+.+...-.+. ...+..+...+...|++++|.+.+++..+. +.. ....++..+...|...|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 58899999999998654211111 467889999999999999999999886543 212 23567888999999999
Q ss_pred CHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC------
Q 037477 316 MMEDAVKLFEFMMDGPY-KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR------ 388 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 388 (639)
++++|...+++..+... .++.. ....++..+...|...|+
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKV---------------------------------GEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHH---------------------------------HHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHHHHHHhcCch---------------------------------HHHHHHHHHHHHHHHcCcccccch
Confidence 99999999988754200 00000 012245566777777788
Q ss_pred --------------hhHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 037477 389 --------------FDEAEKMMKAMKNA----GFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC-IPD----IK 444 (639)
Q Consensus 389 --------------~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~ 444 (639)
+++|.+.+++..+. +.. .....+..+...|...|++++|...+++..+... .++ ..
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888888776432 111 1234677888899999999999999998764210 012 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QA 515 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~ 515 (639)
++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+...-..+ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 788888999999999999999998876311 112 456777888999999999999999987654211112 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 516 TFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
++..+...|.+.|++++|.+.+++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 677888899999999999999998876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-10 Score=114.72 Aligned_cols=215 Identities=9% Similarity=-0.064 Sum_probs=166.4
Q ss_pred ChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 245 YPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV-RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 245 ~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
..++++..++..... .+.+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+...|...|++++|++.
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345677777766422 234788999999999999999 99999999998874 44688999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc---------CChhHHHH
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL---------GRFDEAEK 394 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~ 394 (639)
|+...+. .|+.. .+..+..+|... |++++|.+
T Consensus 160 ~~~al~~--~p~~~-------------------------------------~~~~lg~~~~~~~~~~~~~~~g~~~~A~~ 200 (474)
T 4abn_A 160 FSGALTH--CKNKV-------------------------------------SLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200 (474)
T ss_dssp HHHHHTT--CCCHH-------------------------------------HHHHHHHHHTTCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHhh--CCCHH-------------------------------------HHHHHHHHHHHhccCChhhhhhhHHHHHH
Confidence 9998865 34432 233445555555 88899999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 395 MMKAMKNAGFEPDNITYSQVIFGLCKA--------GRFEDACNVLDEMEENGCI--PDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 395 ~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
.|++..+.. +.+...|..+..+|... |++++|...|++..+.... -+...|..+...|...|++++|.+
T Consensus 201 ~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 201 QAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999888764 44677888888888888 8889999988888875420 267788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
.|++..+.. +-+...+..+...+...|++++|...+..
T Consensus 280 ~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 280 GFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888764 33566777777778888888777765543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-10 Score=112.96 Aligned_cols=227 Identities=9% Similarity=-0.037 Sum_probs=169.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNA----GFEP-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-P-----DIKTWT 447 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-----~~~t~~ 447 (639)
....+...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999998764 1111 2457888899999999999999999987652111 1 235788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCC-CHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYD-AD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRP-WQATFK 518 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~ 518 (639)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...|++..+. .+..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999988763111 12 246778889999999999999999988762 12213 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCh----HhHHHHHhhcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 037477 519 TLIEKLLGARRLEEAMNLLRLMKKQNY---PPFP----EPFVQYISKFGT---VEDASEFLKALSVKEYPSSAAYLQVFE 588 (639)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~----~~~~~ll~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 588 (639)
.+...|.+.|++++|.+.+++..+... .|.. ..+..++...|+ .++|..++++.. ..+.....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 899999999999999999998775211 1111 122333356677 778888887762 23345567889999
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 037477 589 SFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 589 ~~~~~g~~~~A~~~~~~m 606 (639)
.|...|++++|.+.+++.
T Consensus 348 ~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999999884
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-09 Score=93.47 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
+...|..+...|...|++++|.+.|++.++.. +-+...+..+..+|.+.|++++|...+....... .-+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 44555555566666666666666666655543 2245555555556666666666666666555431 11234444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
..+...++++.|.+.+.+..+. .|+.. .+..++...|++++|++.|++..+..|.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 5555666666666666655542 22221 12233346677777777777777767777888888888888888888
Q ss_pred HHHHHHhhC
Q 037477 598 EAKDLLYKC 606 (639)
Q Consensus 598 ~A~~~~~~m 606 (639)
+|++.|++.
T Consensus 159 ~A~~~~~~a 167 (184)
T 3vtx_A 159 EAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888774
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-10 Score=113.87 Aligned_cols=339 Identities=10% Similarity=-0.029 Sum_probs=217.7
Q ss_pred hccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 037477 242 LRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV---RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR--- 315 (639)
Q Consensus 242 ~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--- 315 (639)
-.+++++|++.|+...+. | +...+..|-..|...|+. ++|.+.|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CC
T ss_pred hCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCC
Confidence 358899999999998643 3 445666677777788888 8999999988754 5556666666555555
Q ss_pred --CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 037477 316 --MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEA 392 (639)
Q Consensus 316 --~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 392 (639)
++++|+..|+...+.|... .+..|-..|...+. .....+...+......+. ......+...|...+.++++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccC
Confidence 7899999999998876433 44445555554432 122344444544444443 44566777888888866655
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHH
Q 037477 393 EKMMKAMKNAGFEPDNITYSQVIFGLCKAG---RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA----NEVDRALLC 465 (639)
Q Consensus 393 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----g~~~~a~~~ 465 (639)
......+.+.-...++..+..|...|...| +.++|+..|++..+.|. ++...+..+...|... ++.++|.+.
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 555444333222334448888999999999 99999999999998875 3666666677777655 799999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-H--HcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHH
Q 037477 466 FAKMMEKNYDADADLLDVLING-F--LSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR-----RLEEAMNLL 537 (639)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~ 537 (639)
|++.. .| +...+..|-.. | ...+++++|...|++..+. | +...+..|-..|. .| ++++|.+.|
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99988 54 45556666555 4 4688999999999998876 4 5667777777776 45 999999999
Q ss_pred HHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHhhCC
Q 037477 538 RLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN----EGRHYEAKDLLYKCP 607 (639)
Q Consensus 538 ~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 607 (639)
++.. .|.......+..++.. ..+.++|..+|++..+.. ++.....|...|.. ..+.++|...+++--
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 9887 4432222233333332 349999999999988753 45566778888875 458999999999853
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-07 Score=97.29 Aligned_cols=442 Identities=8% Similarity=-0.015 Sum_probs=281.0
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 037477 110 EKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQF 189 (639)
Q Consensus 110 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~ 189 (639)
.+.+..|+......+ -|..+|..+|..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.|..
T Consensus 49 ~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~--------- 116 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEE--------- 116 (679)
T ss_dssp SCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--C---------
T ss_pred HHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCc---------
Confidence 334444444333232 68999999999999999999999999999876 344455555444433332210
Q ss_pred HHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHH
Q 037477 190 HDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITY 269 (639)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~ 269 (639)
...+.+..+|++........|++..|
T Consensus 117 ------------------------------------------------------~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 117 ------------------------------------------------------LDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp ------------------------------------------------------CCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred ------------------------------------------------------chHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 11445666666664332224777788
Q ss_pred HHHHHHHHcCCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHhhc
Q 037477 270 NGILRVLARHESV--------RDFWNVVEEMKK-EGY-EM-DIDTYIKISRQFQ---------KFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 270 ~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p-~~~~~~~li~~~~---------~~g~~~~a~~l~~~m~~ 329 (639)
...+....+.++. +.+.++|+.... .|. .+ +...|...+.... ..++++.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777666555443 334567776544 365 44 3567777776543 33457888999999886
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC-----------chhHHHHHHHHHHhc--CCC---CC--------------------h
Q 037477 330 GPYKPSVQDCSLLLRSISSINNP-----------DLGLVFRVANKYESL--GNS---LS--------------------K 373 (639)
Q Consensus 330 ~g~~p~~~~~~~ll~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~---~~--------------------~ 373 (639)
.....-..+|......-...+.. +...+......+... ++. |. .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 43222233443222211111110 011112222222221 211 11 1
Q ss_pred hhHHHHHHHHHccC-------ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 037477 374 SVYDGIHRALTKLG-------RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDAC-NVLDEMEENGCIPDIKT 445 (639)
Q Consensus 374 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~t 445 (639)
..|...+.---..+ ..+.+..+|++....- +-+...|-..+.-+...|+.++|. .+|++..... ..+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 24555554333322 1234556788777653 446778888888888899999997 9999988643 346667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEKNY---------DAD------------ADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
|-..+....+.|+++.|.++|+++++... .|+ ..+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888889999999999999999998520 132 246777888888889999999999999
Q ss_pred HHh-CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCC
Q 037477 505 IEK-VRLRPWQATFKTLIEKLLGA-RRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 505 ~~~-~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
.+. ....+......+.+. .+. ++.+.|..+|+...+. .|+.. .|..+....|+.+.|..+|++.....++
T Consensus 461 ~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 875 223333333333333 333 5589999999998874 23332 3444446789999999999999988653
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhcc
Q 037477 579 ---SSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSA 623 (639)
Q Consensus 579 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~ 623 (639)
....|...+..-.+.|+.+.+.++.++|....+.++.+..+..--
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 556788888888899999999999999988777777777665433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-09 Score=91.94 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=137.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 45667778889999999999999887653 44677888899999999999999999999887643 36788888999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998874 4577888888899999999999999999988762 335678888889999999999999
Q ss_pred HHHHHHHh
Q 037477 535 NLLRLMKK 542 (639)
Q Consensus 535 ~~~~~m~~ 542 (639)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-10 Score=105.90 Aligned_cols=223 Identities=13% Similarity=0.038 Sum_probs=150.3
Q ss_pred HccCChhHHHHHHHHHHHC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMKNA-------GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN------GCIP-DIKTWTIL 449 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~l 449 (639)
...|++++|...+++..+. ..+....++..+...|...|++++|...+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 21224567888889999999999999999987753 2122 34678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC-----CCCC-CHHH
Q 037477 450 IQGHCAANEVDRALLCFAKMMEK------NY-DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV-----RLRP-WQAT 516 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~p-~~~~ 516 (639)
...|...|++++|.+.+++..+. .- +....++..+...|...|++++|...|++..+.. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 2235677888889999999999999999887641 1122 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChHhHHHHH----h------hcCCHHHHHHHHHHhhcCCCCC
Q 037477 517 FKTLIEKLLGARRLEEAMNLLRLMKKQ-------NYPPFPEPFVQYI----S------KFGTVEDASEFLKALSVKEYPS 579 (639)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll----~------~~g~~~~a~~~~~~~~~~~~~~ 579 (639)
+..+...|...|++++|.+.+++..+. ...+....+...+ . ....+..+...++......+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888889999999999999999988752 1222222221111 1 1233444444444444334556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 580 SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
...+..+..+|.+.|++++|.+++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999999999874
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-09 Score=104.78 Aligned_cols=227 Identities=11% Similarity=-0.053 Sum_probs=167.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGF-EPD----NITYSQVIFGLCKAGRFEDACNVLDEMEENG--C---IP-DIKTWT 447 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~p-~~~t~~ 447 (639)
....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+.+..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44567789999999999999875421 122 3567888899999999999999999876421 1 11 245788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCCHHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEK----NYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPWQATFKT 519 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~~~~~~~ 519 (639)
.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...|++..+.. +......++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988773 1111 23467778889999999999999999887611 11122667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CCChHhH----HHHHhhcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037477 520 LIEKLLGARRLEEAMNLLRLMKKQNY---PPFPEPF----VQYISKFGT---VEDASEFLKALSVKEYPSSAAYLQVFES 589 (639)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~----~~ll~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 589 (639)
+...|.+.|++++|.+.+++..+... .|..... ..++...|+ +++|..++++.. ..+.....+..+...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 88999999999999999999886322 1222221 222245677 777888877632 233345677889999
Q ss_pred HHhcCCHHHHHHHHhhC
Q 037477 590 FFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 590 ~~~~g~~~~A~~~~~~m 606 (639)
|...|++++|.+.+++.
T Consensus 346 y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999999885
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-08 Score=88.46 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037477 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH 380 (639)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 380 (639)
...|..+...+...|++++|+..|+.+.+.. | .+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------------~~~~~~~~~~ 49 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--A------------------------------------FDVDVALHLG 49 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--S------------------------------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--c------------------------------------cChHHHHHHH
Confidence 4567778888999999999999999886531 1 1233466677
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 460 (639)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHH
Confidence 88889999999999999998764 45678889999999999999999999999987643 37788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+|...++++.+.. +.+...+..+...|...|++++|...++...+.
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999875 456788999999999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-08 Score=89.82 Aligned_cols=207 Identities=7% Similarity=-0.042 Sum_probs=146.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
++..+......+...|++++|.+.|+...+...+++...+..+..++...|++++|+..|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 345666777788888999999999998887753367777777888888999999999999988876533 5567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADA-------DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW---QATFKTLI 521 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li 521 (639)
.|...|++++|...+++..+.. +.+. ..|..+-..+...|++++|...|++..+. .|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 8899999999999999888864 2244 45667777788888999999998887653 554 34556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH-hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI-SKFGTVEDASEFLKALSVKEYPSSAAYLQVFES 589 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 589 (639)
..|...| ..+++++...+ ..+...+.... ...+.+++|...+++..+..|.+..+...+...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 6665433 34455554432 12233333333 344667888888888888777777766655443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=102.82 Aligned_cols=232 Identities=9% Similarity=0.001 Sum_probs=136.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 307 ISRQFQKFRMMEDAVKLFEFMMDGP-YKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
....+...|++++|+..|++..+.- -.++... ...++..+...|..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~a~~~~~lg~~~~~ 155 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE---------------------------------KAEFFFKMSESYYY 155 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH---------------------------------HHHHHHHHHHHHHH
Confidence 4556677888888888888776531 0111110 12245556667777
Q ss_pred cCChhHHHHHHHHHHHCCC-CC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGF-EP-----DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWTILIQGHC 454 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~li~~~~ 454 (639)
.|++++|.+.+.+..+.-. .+ ...+++.+...|...|++++|...|++..+.... ++ ..++..+...|.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 7777777777776654210 01 1345666777777777777777777776532100 11 236666777777
Q ss_pred HcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 037477 455 AANEVDRALLCFAKMMEK----NY-DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW---QATFKTLIEKLLG 526 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~ 526 (639)
..|++++|.+.+++..+. +. +....++..+...|.+.|++++|...+++..+...-..+ ...+..+...+..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 777777777777777661 22 223456667777777777777777777765543111111 2234556666677
Q ss_pred cCC---HHHHHHHHHHHHhCCCCCChHh----HHHHHhhcCCHHHHHHHHHHhhc
Q 037477 527 ARR---LEEAMNLLRLMKKQNYPPFPEP----FVQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 527 ~g~---~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
.|+ +++|+.++++. +..|+... +..++...|+.++|..++++..+
T Consensus 316 ~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp SCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777 55555555544 34443332 23334566777777777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-08 Score=96.59 Aligned_cols=299 Identities=12% Similarity=-0.004 Sum_probs=181.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDID----TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
.+......+...|++++|...+++.....-..+.. .++.+...+...|++++|...+++.....
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 83 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA------------ 83 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH------------
Confidence 33444456677899999999998877754222322 45667777888899999988888775420
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHC----CCC--C-CHHhHHHHH
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA----GFE--P-DNITYSQVI 415 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li 415 (639)
.. .+.. ....++..+...+...|++++|...+++..+. +.. | ....+..+.
T Consensus 84 ---~~------------------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 84 ---RQ------------------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp ---HH------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred ---Hh------------------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 00 0000 01123556777888889999988888877643 211 2 234556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHH
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCI--P--DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD--ADLLD----VLI 485 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~----~li 485 (639)
..+...|++++|...+++....... + ...++..+...+...|++++|...+++.....-.++ ..... ..+
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 7788888888888888887654221 1 235677777888888888888888888776321111 12111 122
Q ss_pred HHHHcCCChhHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChH-h---HHHH
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEKVRLRP--WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ----NYPPFPE-P---FVQY 555 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-~---~~~l 555 (639)
..+...|++++|...+++........+ ....+..+...+...|++++|...++...+. |..++.. . ...+
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~ 302 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 302 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 346788888888888877654311111 1234566677788888888888888776542 2111111 1 1222
Q ss_pred HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 556 ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 556 l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+...|+.++|...+++.....++ .-.+..+...| +....+++++
T Consensus 303 ~~~~g~~~~A~~~l~~al~~~~~-----~g~~~~~~~~g--~~~~~ll~~~ 346 (373)
T 1hz4_A 303 YWQAGRKSDAQRVLLDALKLANR-----TGFISHFVIEG--EAMAQQLRQL 346 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH-----HCCCHHHHTTH--HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhcc-----ccHHHHHHHcc--HHHHHHHHHH
Confidence 34667788888777777654211 11233444445 4555666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-08 Score=108.61 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4678889999999999999999999998874 345788999999999999999999999999886533 57899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLE 531 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 531 (639)
|...|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|+..|++..+. .|+ ...|..+...|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999875 346889999999999999999999999999876 444 678899999999999999
Q ss_pred HHHHHHHHHHh
Q 037477 532 EAMNLLRLMKK 542 (639)
Q Consensus 532 ~A~~~~~~m~~ 542 (639)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-07 Score=93.10 Aligned_cols=302 Identities=13% Similarity=-0.012 Sum_probs=206.3
Q ss_pred HHHHHhccChHHHHHHHHHHhccCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 037477 237 TVLKELRIYPVKALGFFRWVGEHSGYKHNT----ITYNGILRVLARHESVRDFWNVVEEMKKEGY-EMD----IDTYIKI 307 (639)
Q Consensus 237 ~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l 307 (639)
..+....+++++|...++....... ..+. .+++.+...+...|++++|.+.+++...... ..+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344457999999999999865432 1222 2567777888899999999999998765310 112 2346778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCC--C-ChhhHHHHHHHHH
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNS--L-SKSVYDGIHRALT 384 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~ 384 (639)
...+...|++++|...+++..+. ....+.. + ....+..+...+.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~---------------------------------~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQL---------------------------------INEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------------------------------HHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH---------------------------------HHHhccccCcHHHHHHHHHHHHHH
Confidence 88999999999999999877531 1111221 2 2346677888999
Q ss_pred ccCChhHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEP----DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWT----ILIQGHC 454 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~----~li~~~~ 454 (639)
..|++++|...+++........ ...++..+...+...|++++|...+++.......++ ..... ..+..+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 9999999999999987653221 234677788889999999999999999875321111 22111 2334477
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCCH-HHHHHHHHHHHhc
Q 037477 455 AANEVDRALLCFAKMMEKNYDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPWQ-ATFKTLIEKLLGA 527 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~~-~~~~~li~~~~~~ 527 (639)
..|++++|...+++.......+ ....+..+...+...|++++|...++...... +..++. ..+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 9999999999999887643221 13356677888999999999999999876531 211222 3566677888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCC
Q 037477 528 RRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~ 577 (639)
|+.++|...+++..+.. +. .-+...+...| +....+++.+....+
T Consensus 307 g~~~~A~~~l~~al~~~--~~-~g~~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLA--NR-TGFISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp TCHHHHHHHHHHHHHHH--HH-HCCCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHh--cc-ccHHHHHHHcc--HHHHHHHHHHHhCCC
Confidence 99999999999988631 11 11222233333 556666666666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=95.02 Aligned_cols=236 Identities=11% Similarity=0.017 Sum_probs=152.3
Q ss_pred HcCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 277 ARHESVRDFWNVVEEMKK-------EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
...|++++|...+++..+ ...+....++..+...|...|++++|+..|++..+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------- 72 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI------------------- 72 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------------------
Confidence 345666666666665544 222334677888999999999999999999887542
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC------C-CCCCHHhHHHHHHHHHhcC
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA------G-FEPDNITYSQVIFGLCKAG 422 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g 422 (639)
..............++..+...|...|++++|.+.+++..+. . -+.....+..+...|...|
T Consensus 73 -----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 73 -----------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp -----------HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred -----------HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 000000001112346777889999999999999999988764 1 1223567888899999999
Q ss_pred CHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHH
Q 037477 423 RFEDACNVLDEMEEN------GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK-------NYDA-DADLLDVLING 487 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~ 487 (639)
++++|...|++..+. +-.| ...++..+...|...|++++|...+++..+. ...+ ....+..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 999999999998764 1122 3467888999999999999999999988863 1122 22233333333
Q ss_pred HHcCCChhHHHHHHHHHH--HhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMI--EKVR-LRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~--~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+...+....+..+..... +..+ ..| ...++..+...|...|++++|.+++++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443333333222211111 1101 112 245677888889999999999999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-08 Score=90.83 Aligned_cols=211 Identities=12% Similarity=-0.031 Sum_probs=155.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
..|+..+......+...|++++|...|++..+....++...+..+..++...|++++|.+.+++..+.. +-+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678888899999999999999999999887654677888889999999999999999999999875 3356778888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHh
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQ-----ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF--PEPFVQYIS 557 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~ 557 (639)
...|...|++++|...|++..+...-.+.. ..|..+-..+...|++++|++.+++..+ ..|+ .......++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 999999999999999999998763222211 4577777888899999999999999987 3465 222111111
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 558 KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 558 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
.+ ....+..+++++....+.+...|.... ....|.+++|...+++...-.+..+....+++
T Consensus 161 ~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VL-FYNNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HH-HHHHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 11 134455666777666666666665544 34467789999999987554455555555444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.4e-07 Score=90.40 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=139.0
Q ss_pred HHHHhccChHHHHHHHHHHhccCCCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----C-CCC-CHHHHHHH
Q 037477 238 VLKELRIYPVKALGFFRWVGEHSGYKH----NTITYNGILRVLARHESVRDFWNVVEEMKKE----G-YEM-DIDTYIKI 307 (639)
Q Consensus 238 ~l~~~~~~~~~A~~~f~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p-~~~~~~~l 307 (639)
.+....+++++|+..|+...+...-.+ ...++..+...|...|+++.|...+++..+. + ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 334446888999999988753322122 3467888888999999999999988887652 1 111 25578888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHcc
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNS-LSKSVYDGIHRALTKL 386 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 386 (639)
...|...|++++|++.|++..+. +.. .+.. ....++..+..+|...
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~---------------~~~------------------~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALEL---------------AMD------------------IQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------------HHH------------------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---------------HHH------------------cCCHHHHHHHHHHHHHHHHHC
Confidence 88999999999999998877531 000 0000 0123466677777888
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHHcC
Q 037477 387 GRFDEAEKMMKAMKN-----AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI---P-DIKTWTILIQGHCAAN 457 (639)
Q Consensus 387 g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~t~~~li~~~~~~g 457 (639)
|++++|.+.+++..+ .. +....++..+...|.+.|++++|...+++..+.... | ....+..+...|...|
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 888888888877765 22 222455666667777777777777777776543111 1 1233444444445555
Q ss_pred C---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 458 E---VDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 458 ~---~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+ +.+|...+++ .+..++ ...+..+...|...|++++|...|+...
T Consensus 315 ~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 315 DERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5 4445444443 211111 2234445555666666666666665544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-08 Score=105.87 Aligned_cols=166 Identities=12% Similarity=0.077 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHH
Q 037477 300 DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI 379 (639)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (639)
+...|+.+...|.+.|++++|++.|++..+. .|+ +...+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~------------------------------------~~~a~~nL 49 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE------------------------------------FAAAHSNL 49 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC------------------------------------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------------------------------------CHHHHHHH
Confidence 3556666666677777777777776665442 111 22345556
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV 459 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 459 (639)
..+|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++..+.... +...|+.+...|...|++
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 666777777777777777766653 334667777777777778888888877777765432 566777777788888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 460 DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
++|++.|++.++.. +-+...+..+..+|...|++++|.+.+++..+
T Consensus 128 ~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 88888888777764 33566777777788888888877777776554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=88.30 Aligned_cols=247 Identities=12% Similarity=0.050 Sum_probs=142.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 037477 309 RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR 388 (639)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 388 (639)
+-..-.|.+..++.-...+.. ..+......+.+++...+..+. .....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~-----------~~~~~~~~~a~~~la~-~~~~~- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQS-----------QDPTSKLGKVLDLYVQ-FLDTK- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCC-----------CCSSSTTHHHHHHHHH-HHTTT-
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCcc-----------CCCCCHHHHHHHHHHH-Hhccc-
Confidence 334557888888874443322 1222333334455555554321 1111222223333333 22322
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC-IPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
|...|++..+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566677666554 45555556777777888888888888887766553 1255677777788888888888888888
Q ss_pred HHHHcCCCC-----CHHHHHHHHHH--HHc--CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 468 KMMEKNYDA-----DADLLDVLING--FLS--QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 468 ~m~~~g~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
+|.+. .| +..+...|..+ ... .+++.+|+.+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 88765 44 24555555544 222 33788888888887654 3442333344446777888888888887
Q ss_pred HHHhC-----CC---CC-ChHhHHHHH---hhcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 539 LMKKQ-----NY---PP-FPEPFVQYI---SKFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 539 ~m~~~-----~~---~p-~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
.+.+. .- .| +..++..++ ...|+ +|.++++++.+..|.++.+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 65542 00 13 334443442 23454 7777777777777666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=78.70 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
|..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 33444444455555555555555444322 134444445555555555555555555555443 2234444555555555
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.|++++|..+++++.+.. ..+...+..+...+.+.|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554431 12344455555555555555555555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-07 Score=77.04 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=111.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|.++++++.+.+ +.+...+..+...+...|++++|...|+++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 56778888999999999999999988764 44677888889999999999999999999887653 36778888999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998875 446778888899999999999999999988765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=8.4e-07 Score=83.90 Aligned_cols=254 Identities=11% Similarity=0.010 Sum_probs=149.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 274 RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
+-.--.|++..++.-...+.. ......-.-+.++|...|++... ..-.|....+..+...+. .+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc---
Confidence 344556788777763322221 22223333445677777766531 112233333333333322 11
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF-EPDNITYSQVIFGLCKAGRFEDACNVLD 432 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (639)
+...++++...+ .++...+..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 233344443333 34444555677788888888888888888765542 1245667777888888888888888888
Q ss_pred HHHHCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 433 EMEENGCIP-----DIKTWTILIQG--HCAAN--EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 433 ~m~~~~~~p-----~~~t~~~li~~--~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+|.+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88764 35 24555666656 33334 788888888887654 35534444555578888888888888886
Q ss_pred HHHhCC----C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 037477 504 MIEKVR----L---RP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQY 555 (639)
Q Consensus 504 m~~~~~----~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (639)
+.+.+. . .| +..+...+|......|+ +|.+++.++.+ ..|+......+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~ 292 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHH 292 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHH
Confidence 654310 0 13 34555455555555676 77888888877 44665544444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-07 Score=88.67 Aligned_cols=205 Identities=9% Similarity=-0.061 Sum_probs=136.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN----GCIPD-IKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~li~~~~~~g~~~~a 462 (639)
++++|...|.+. ...|...|++++|...|.+..+. |-.++ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367777776665 34566778888888888776542 21111 45778888888888888888
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHcC-CChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 037477 463 LLCFAKMMEKNYD-AD----ADLLDVLINGFLSQ-KRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 463 ~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 532 (639)
...+++.++.... .+ ..+++.+...|... |++++|+..|++..+...-..+ ..+|..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888877663110 11 34677778888886 9999999998887654211111 3467788888899999999
Q ss_pred HHHHHHHHHhCCCCCChH------hH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHH--hcCCH
Q 037477 533 AMNLLRLMKKQNYPPFPE------PF---VQYISKFGTVEDASEFLKALSVKEYPSSA-----AYLQVFESFF--NEGRH 596 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~------~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~ 596 (639)
|+..+++..+........ .+ ..++...|++++|...+++..+..|.... .+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999888744322211 12 22235679999999999988876443322 3445566665 45789
Q ss_pred HHHHHHHhhCC
Q 037477 597 YEAKDLLYKCP 607 (639)
Q Consensus 597 ~~A~~~~~~m~ 607 (639)
++|++.++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 99999998864
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.8e-08 Score=90.94 Aligned_cols=190 Identities=9% Similarity=-0.029 Sum_probs=126.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C-CCHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD---IKTWTILIQGHCAANEVDRALLCFAKMMEKNY-D-ADAD 479 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~-~~~~ 479 (639)
+.+...+-.+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++.++... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345667777888899999999999999999886532 2 56788888999999999999999999998632 1 2245
Q ss_pred HHHHHHHHHHc--------CCChhHHHHHHHHHHHhCCCCCCHHHH---------------HHHHHHHHhcCCHHHHHHH
Q 037477 480 LLDVLINGFLS--------QKRVNGAYKLLVEMIEKVRLRPWQATF---------------KTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 480 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~~~~~---------------~~li~~~~~~g~~~~A~~~ 536 (639)
.+..+..++.. .|++++|...|++..+.+.-.+..... ..+...|.+.|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66677778888 999999999999998874433332211 3445666777777777777
Q ss_pred HHHHHhCCCCCChH----hH---HHHHhhc----------CCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCH
Q 037477 537 LRLMKKQNYPPFPE----PF---VQYISKF----------GTVEDASEFLKALSVKEYPSS---AAYLQVFESFFNEGRH 596 (639)
Q Consensus 537 ~~~m~~~~~~p~~~----~~---~~ll~~~----------g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 596 (639)
|+++.+.. |+.. .+ ...+... |++++|...++++.+..|.+. ..+..+...+.+.|++
T Consensus 171 ~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 171 YEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 77776532 3211 11 1111222 667777777777776655553 3333444444444443
Q ss_pred H
Q 037477 597 Y 597 (639)
Q Consensus 597 ~ 597 (639)
+
T Consensus 249 ~ 249 (261)
T 3qky_A 249 E 249 (261)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-07 Score=89.40 Aligned_cols=205 Identities=10% Similarity=-0.055 Sum_probs=146.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNA----GFEPD-NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKT 445 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t 445 (639)
|......|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|+..|++..+.... .+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444566788999999999999887653 32222 468899999999999999999999987653111 11 357
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH-----
Q 037477 446 WTILIQGHCAA-NEVDRALLCFAKMMEKNYD-AD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ----- 514 (639)
Q Consensus 446 ~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----- 514 (639)
++.+...|... |++++|...|++.++.... .+ ..++..+...|.+.|++++|...|++..+...-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88899999996 9999999999998874211 11 3568888999999999999999999998752222221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH------hHHHHH-----hhcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 515 ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE------PFVQYI-----SKFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll-----~~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
..|..+..++...|++++|...+++..+ +.|+.. .+..+. ...+++++|...|+++....|.....
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 2567778889999999999999999876 334322 122222 13467888888887776654433333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-07 Score=81.20 Aligned_cols=185 Identities=9% Similarity=0.034 Sum_probs=117.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA--DLLDV 483 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~ 483 (639)
...+..+...+...|++++|...|+++.+.... |. ...+..+..+|.+.|++++|...|+++++....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556677788889999999999988875422 11 356777888888999999999999988876422111 13333
Q ss_pred HHHHHHc------------------CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 484 LINGFLS------------------QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 484 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
+..++.. .|++++|...|+++.+.+.-.+. .+..... .+. +...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~----l~~------~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKR----LVF------LKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHH----HHH------HHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHH----HHH------HHHHHHH---
Confidence 3444443 45566666666666654222222 1111100 000 0000000
Q ss_pred CCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 546 PPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSS---AAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 546 ~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
.......++...|++++|+..|+++.+..|.++ ..+..+..+|.+.|++++|.+.++++...
T Consensus 149 --~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 149 --YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 001223445678999999999999998877665 67889999999999999999999986443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.1e-07 Score=84.24 Aligned_cols=175 Identities=10% Similarity=0.029 Sum_probs=134.9
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD-IKTW 446 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~t~ 446 (639)
+...+-.....+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+.... |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34456667778889999999999999998763 223 567888889999999999999999999886421 22 4567
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHcCCChhHHHHHH
Q 037477 447 TILIQGHCA--------ANEVDRALLCFAKMMEKNYDADADLL-----------------DVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 447 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~A~~~~ 501 (639)
..+..++.. .|++++|...|++.++.... +.... ..+...|.+.|++++|...|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 778888888 99999999999999986422 22222 45577899999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChH
Q 037477 502 VEMIEKVRLRP-WQATFKTLIEKLLGA----------RRLEEAMNLLRLMKKQNYPPFPE 550 (639)
Q Consensus 502 ~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~ 550 (639)
+.+.+.+.-.+ ....+..+..+|... |++++|...++++.+. .|+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 99988743333 245677777888766 8999999999999873 35543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-06 Score=79.30 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=57.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPD-NITYSQ----------------VIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
....+...|++++|...|++..+. .|+ ...|.. +..+|.+.|++++|+..|++..+....
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN- 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Confidence 344566778888888888887765 232 333444 445555555555555555555544322
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
+...|..+...|...|++++|...|++.++.. +-+...+..+...|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555543 223444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-07 Score=79.89 Aligned_cols=162 Identities=13% Similarity=0.025 Sum_probs=104.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG-HC 454 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~ 454 (639)
+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4445566777888888888888765542 3356677778888888888888888888776543 344333222111 11
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
..+....|...+++..+.. +-+...+..+...+...|++++|...|+++.+...-..+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222234667777777653 335677777777788888888888888877654211122456777777777778877777
Q ss_pred HHHHHHH
Q 037477 535 NLLRLMK 541 (639)
Q Consensus 535 ~~~~~m~ 541 (639)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-06 Score=84.45 Aligned_cols=165 Identities=15% Similarity=0.038 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI-LIQ 451 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-li~ 451 (639)
...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...+++..... |+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3445556666677777777777777776653 3355666677777777777777777777765543 44332222 222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
.+...++.+.|...+++..+.. +.+...+..+...|...|++++|...|.++.+...-..+...+..+...|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3455566666777777766654 345666677777777777777777777777665221112456667777777777777
Q ss_pred HHHHHHHHHH
Q 037477 532 EAMNLLRLMK 541 (639)
Q Consensus 532 ~A~~~~~~m~ 541 (639)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7776666543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.5e-07 Score=96.52 Aligned_cols=153 Identities=11% Similarity=-0.032 Sum_probs=89.6
Q ss_pred HccCChhHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMK--------NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
...|++++|.+.+++.. +.. +.+...+..+...|...|++++|...|++..+.... +...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55566666666666665 221 233455566666666666666666666666654322 45566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
.|++++|.+.|++.++.. +-+...+..+..+|.+.|++++ ...|++..+.. .-+...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666653 2244555566666666666666 66666665541 1134455666666666666666666
Q ss_pred HHHHHHh
Q 037477 536 LLRLMKK 542 (639)
Q Consensus 536 ~~~~m~~ 542 (639)
.|++..+
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 6665554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-06 Score=76.53 Aligned_cols=167 Identities=10% Similarity=0.062 Sum_probs=107.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCC-C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-P-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PDI-KTWTILI 450 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~t~~~li 450 (639)
.+..+...+.+.|++++|...|+.+.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3445666788899999999999999876321 1 1356777889999999999999999999876433 111 2344444
Q ss_pred HHHHH------------------cCCHHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHcCCCh
Q 037477 451 QGHCA------------------ANEVDRALLCFAKMMEKNYDADA-DLL-----------------DVLINGFLSQKRV 494 (639)
Q Consensus 451 ~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~-~~~-----------------~~li~~~~~~g~~ 494 (639)
.++.. .|+.++|...|+++++.. |+. ..+ ..+...|.+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 44443 578999999999998863 322 121 1233445566666
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 495 NGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
++|...|+.+.+.+.-.|. ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 6666666666655221111 134555666666666666666666666553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-06 Score=75.43 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 037477 391 EAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN----EVDRALLCF 466 (639)
Q Consensus 391 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g----~~~~a~~~~ 466 (639)
+|.+.|++..+.| +...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665543 45556666666666666666666666666543 44555555555555 4 666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHH
Q 037477 467 AKMMEKNYDADADLLDVLINGFLS----QKRVNGAYKLLVEMIEKVRLRPW---QATFKTLIEKLLG----ARRLEEAMN 535 (639)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~ 535 (639)
++..+.| +...+..|-..|.. .+++++|..+|+...+. .|. ...+..|-..|.. .++.++|..
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 6665554 44455555555554 55666666666655433 221 3445555555554 455555555
Q ss_pred HHHHHHhC
Q 037477 536 LLRLMKKQ 543 (639)
Q Consensus 536 ~~~~m~~~ 543 (639)
.|++..+.
T Consensus 151 ~~~~A~~~ 158 (212)
T 3rjv_A 151 YFKGSSSL 158 (212)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-06 Score=89.44 Aligned_cols=132 Identities=8% Similarity=-0.032 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...|...|++++|.+.+++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+...
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 100 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4555666666666666666666666666543 234555666666666666666666666666554322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHHh
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ---KRVNGAYKLLVEMIEK 507 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 507 (639)
|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|...+++..+.
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 666666666666666666553 23455566666666666 6666666666666554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9e-07 Score=75.43 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=102.7
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 460 (639)
..+...|++++|+..+....... +-+...+-.+...|.+.|++++|++.|++..+.... +..+|..+...|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34556678888888887765431 122445667788888999999999999988876543 6788888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH-HHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL-LVEMIEKVRLRP-WQATFKTLIEKLLGARR 529 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 529 (639)
+|...|++.++.. +-+...+..+...|.+.|++++|.+. ++...+. .| +...|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCc
Confidence 9999999888874 33677888888888888888776655 4666654 34 34566666666665553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.2e-06 Score=74.21 Aligned_cols=188 Identities=12% Similarity=-0.001 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037477 303 TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRA 382 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 382 (639)
.+-.....+...|++++|+..|+...+. .|+......... ... . ..........+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~-~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN----VDK-N---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH----SCT-T---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh----hcc-h---------------hhhhHHHHHHHHHH
Confidence 3344445566778888888888877653 232221110000 000 0 00112234457888
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--H
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV--D 460 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~--~ 460 (639)
|.+.|++++|...|++..+.. +-+...|..+...|...|++++|...|++..+.... +...|..+...|...|+. .
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998875 456888999999999999999999999999987543 678888888888766543 3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+...++.... ..|....+..+-.++...|++++|...|++..+ +.|+......
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~ 195 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 44555554431 122222333344456667889999999998864 4677554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-06 Score=91.63 Aligned_cols=170 Identities=15% Similarity=0.006 Sum_probs=98.6
Q ss_pred CchhHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 352 PDLGLVFRVANKYES-------LGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 352 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
.+.+.+...++.... ...+.+...+..+..+|...|++++|.+.|++..+.. +.+...|..+..+|...|++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCH
Confidence 345555555555541 1112234456666666666777777777776666543 33455666666666677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
++|...|++..+.... +...|..+..+|.+.|++++ .+.|++.++.+ +-+...|..+..+|.+.|++++|...|++.
T Consensus 484 ~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7777777766654422 44566666666667777766 66676666654 335556666666677777777777776655
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcC
Q 037477 505 IEKVRLRPW-QATFKTLIEKLLGAR 528 (639)
Q Consensus 505 ~~~~~~~p~-~~~~~~li~~~~~~g 528 (639)
.+ +.|+ ...|..+..++...|
T Consensus 561 l~---l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 561 PP---TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp CT---TSTTHHHHHHHHHHHTC---
T ss_pred cc---cCcccHHHHHHHHHHHHccC
Confidence 43 3444 344545555554433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.1e-06 Score=80.47 Aligned_cols=209 Identities=14% Similarity=0.029 Sum_probs=132.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCC--HHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEKN--Y-DAD--ADLLDV 483 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~--~~~~~~ 483 (639)
....|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|...+++.++.- . .+. ..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345677788888888888876542 1100 13477788888888899988888888776531 1 111 345667
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChH-hHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQ----NYPPFPE-PFVQ 554 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-~~~~ 554 (639)
+...|.. |++++|+..|++..+...-..+ ..++..+...|.+.|++++|++.+++..+. +..+... .+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 7777877 9999999998877653211111 456778888888999999999999887752 1111111 1211
Q ss_pred H---HhhcCCHHHHHHHHHHhhcCCCC---CH--HHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhccCCC
Q 037477 555 Y---ISKFGTVEDASEFLKALSVKEYP---SS--AAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSAKSN 626 (639)
Q Consensus 555 l---l~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~~~~ 626 (639)
+ ....|++++|...|++.. ..|. .. .....++.++ ..|+.+.+.+ +.+-+.-..-++|...+.......
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l~~~ 277 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR-VCRSPLVTYMDNDYAKLAISLKVP 277 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH-HHhCchhhhhhHHHHHHHHhCCCC
Confidence 1 134599999999999888 5332 21 2344555555 5788877777 333333344567777666554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.3e-06 Score=78.94 Aligned_cols=202 Identities=10% Similarity=-0.012 Sum_probs=124.3
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++.++|.+++++..+... .. .+...+++++|...|... ...|...|++++|...
T Consensus 5 ~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 566788888887643211 11 011146777777777654 4567788999999988
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC-
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA- 402 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 402 (639)
|.+..+. +.+.+ +.. .-..+|+.+..+|...|++++|...|++..+.
T Consensus 59 ~~~al~~---------------~~~~~--~~~---------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 59 YLQEAEA---------------HANNR--SLF---------------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY 106 (307)
T ss_dssp HHHHHHH---------------HHHTT--CHH---------------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHcC--CHH---------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8876531 11111 000 01235666778888889999998888876543
Q ss_pred ---CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 403 ---GFEPD--NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP-----DIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 403 ---g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
| .+. ..+++.+...|.. |++++|+..|++..+..... ...++..+...|...|++++|...|++.++.
T Consensus 107 ~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 107 VENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 111 3456667777777 88888888887765421100 1346667777777888888888877777652
Q ss_pred ----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 473 ----NYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 473 ----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+..+. ...+..+..++...|++++|...|++..
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11111 1245555566666777777777777765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-05 Score=71.92 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG----RFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+...+..+...|...+++++|.+.|++..+.| +...+..|-..|.. + ++++|...|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34445555555555566666666666655543 34444555555554 4 5666666666655543 444555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhCCCCCCHHHHH
Q 037477 448 ILIQGHCA----ANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLS----QKRVNGAYKLLVEMIEKVRLRPWQATFK 518 (639)
Q Consensus 448 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 518 (639)
.|...|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|..+|+...+. + .+...+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~--~~~~a~~ 166 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S--RTGYAEY 166 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S--CTTHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C--CCHHHHH
Confidence 55555544 55566666666655554411 014444555555555 45566666666655443 1 1222344
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 037477 519 TLIEKLLGA-R-----RLEEAMNLLRLMKKQN 544 (639)
Q Consensus 519 ~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 544 (639)
.|-..|... | +.++|...+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444332 2 5555555555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00011 Score=70.23 Aligned_cols=217 Identities=10% Similarity=0.036 Sum_probs=164.2
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc--
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG--RFEDACNVLDEMEENGCIPDIKTWTILIQGH----CAA-- 456 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~----~~~-- 456 (639)
+....++|+++++.+...+ +-+...|+.--..+...| ++++++..++.+.....+ +..+|+.--..+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 3344568999999998875 345667888888888888 999999999999987654 556666544444 455
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 037477 457 -NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN--GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR---- 529 (639)
Q Consensus 457 -g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---- 529 (639)
+++++++++++.+.+.. +-+..+|+.-.-.+.+.|.++ +++++++.+.+.. .-|...|+.-...+.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 78999999999999976 447888888777788888888 9999999999873 2356667665555666666
Q ss_pred --HHHHHHHHHHHHhCCCCCChH-hH---HHHHhhcCC-HHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 037477 530 --LEEAMNLLRLMKKQNYPPFPE-PF---VQYISKFGT-VEDASEFLKALSVKE---YPSSAAYLQVFESFFNEGRHYEA 599 (639)
Q Consensus 530 --~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~-~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 599 (639)
++++++.++.+... .|+.. .+ ..++.+.|+ .+....+..++.+.. +.++..+..++++|.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999998874 34433 22 334456666 444666777766543 77899999999999999999999
Q ss_pred HHHHhhCCc
Q 037477 600 KDLLYKCPH 608 (639)
Q Consensus 600 ~~~~~~m~~ 608 (639)
.+++++...
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00018 Score=68.54 Aligned_cols=232 Identities=10% Similarity=0.030 Sum_probs=162.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 276 LARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR--MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
..+....++|+++++.+.... +-+...|+.--..+...| ++++++++++.+.....+.- ..|+.--..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y-~aW~~R~~i-------- 112 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY-QIWNYRQLI-------- 112 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-HHHHHHHHH--------
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-HHHHHHHHH--------
Confidence 334444578999999998874 335666888777788888 99999999998876422111 111110000
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE--DACNVL 431 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~ 431 (639)
+..++......+++++++++++.+.+.. +.+...|+--...+.+.|.++ ++++.+
T Consensus 113 ----------------------L~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 113 ----------------------IGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ----------------------HHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ----------------------HHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 0000011111267899999999998875 557888888888888888888 999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH-HHHHHHHH
Q 037477 432 DEMEENGCIPDIKTWTILIQGHCAANE------VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNG-AYKLLVEM 504 (639)
Q Consensus 432 ~~m~~~~~~p~~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m 504 (639)
+++.+.... |...|+.-...+.+.|. ++++++.+++++... +-|...|+-+-..+.+.|+... +..+..++
T Consensus 170 ~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 170 DKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 999988765 88888877777777666 888999999998876 4588888888888888887444 44566555
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 505 IEKV-RLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 505 ~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.+.. .-..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4321 1123567788888888888888888888888765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-06 Score=81.83 Aligned_cols=133 Identities=17% Similarity=0.098 Sum_probs=82.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
+.+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 334455566666677777777777777777665432 55666677777777777777777777766542 333322222
Q ss_pred -HHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 485 -INGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 485 -i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...+...++.++|...+++..... ..+...+..+...+...|++++|++.+.++.+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 223455566666777776666541 22355666666667777777777777776665
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.44 E-value=8.2e-06 Score=70.46 Aligned_cols=128 Identities=9% Similarity=-0.051 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3455555666666666666666666554322 45666666666667777777777776666653 334566666666677
Q ss_pred cCCChhHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 490 SQKRVNGAYKLLVEMIEKVRLRPWQATF--KTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
..|++++|...|++..+...- +...+ ..+...+.+.|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777776654222 22233 233333556677777777666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=73.51 Aligned_cols=164 Identities=12% Similarity=0.018 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..|+..... .|+...+ .+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~- 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL- 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH-
Confidence 34556677888999999999999877653 446788899999999999999999999988654 2332211 111000
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDA 427 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 427 (639)
.+...+...+|...+++..+.. +.+...+..+...+...|++++|
T Consensus 83 ----------------------------------~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A 127 (176)
T 2r5s_A 83 ----------------------------------ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEA 127 (176)
T ss_dssp ----------------------------------HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------------------HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 0011112233566666666543 33466777777777778888888
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 428 CNVLDEMEENGCIP-DIKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 428 ~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
...|+++.+....+ +...+..+...+...|+.++|...|++.+.
T Consensus 128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88877777654332 245677777777777777777777766543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.7e-06 Score=87.86 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=43.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA- 456 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~- 456 (639)
.+..+|...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.... +...+..+...+...
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhh
Confidence 34444444444555554444444432 223444444555555555555555555554443221 344444455555555
Q ss_pred --CCHHHHHHHHHHHHHc
Q 037477 457 --NEVDRALLCFAKMMEK 472 (639)
Q Consensus 457 --g~~~~a~~~~~~m~~~ 472 (639)
|+.++|.+.+++..+.
T Consensus 140 ~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhc
Confidence 5555555555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-05 Score=72.75 Aligned_cols=165 Identities=10% Similarity=-0.008 Sum_probs=118.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGF-EPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWT 447 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~ 447 (639)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999876421 2221 12334666677778999999999998874222 22 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCCC-HHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEK-----NYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRPW-QATF 517 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~ 517 (639)
.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+. .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999988851 21222 236778888899999999999998876643 122222 5678
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHh
Q 037477 518 KTLIEKLLGAR-RLEEAMNLLRLMKK 542 (639)
Q Consensus 518 ~~li~~~~~~g-~~~~A~~~~~~m~~ 542 (639)
..+-.+|.+.| .+++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888899 46899988887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00012 Score=70.22 Aligned_cols=205 Identities=9% Similarity=-0.052 Sum_probs=140.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDT---YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
...|+..+...+...+.-.- + .+.......+... +...+..+...|++++|..++++..+.. +...
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~ 109 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHP 109 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCH
T ss_pred CCCCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--cCCh
Confidence 34688888887777765431 1 1222222223333 3344677889999999999999987632 1111
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HHhHH
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-PD----NITYS 412 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~ 412 (639)
.....+ ..+..+...+...|++++|.+.|++..+.... ++ ..+++
T Consensus 110 ~~~~~~------------------------------~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 110 EFQQFL------------------------------QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHH------------------------------HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHH------------------------------HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 100000 12344666777888999999999999874322 22 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEE----N-GCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEK----NYDAD-ADLL 481 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~ 481 (639)
.+...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|...+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999874 1 11122 247888999999999999999999988762 22222 5778
Q ss_pred HHHHHHHHcCCC-hhHHHHHHHHHHH
Q 037477 482 DVLINGFLSQKR-VNGAYKLLVEMIE 506 (639)
Q Consensus 482 ~~li~~~~~~g~-~~~A~~~~~~m~~ 506 (639)
..+..+|.+.|+ +++|...|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888899999995 6999999987654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00048 Score=71.05 Aligned_cols=373 Identities=10% Similarity=-0.012 Sum_probs=202.1
Q ss_pred CChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcC-chhh
Q 037477 107 NDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDS-LKQFWVTLRRMKED-HC-YIEEETYLSILGVLKKAK-KASD 182 (639)
Q Consensus 107 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~l~~~m~~~-g~-~~~~~t~~~ll~~~~~~~-~~~~ 182 (639)
++.+.+..+|+..... .|++..|..-+....+.+. .+.+..+|+..... |. ..+...|...+.-+.... ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7899999999988872 3799999998888877663 35567778776653 43 235566766665443211 1234
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCC
Q 037477 183 LAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGY 262 (639)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~ 262 (639)
...+..+|+..+..... . ...+-..|.. ++.. ........++.........|..+++.+.....
T Consensus 105 ~~~vR~iy~rAL~~P~~-~-~~~lw~~Y~~----------fE~~---~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~- 168 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMG-S-LSELWKDFEN----------FELE---LNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR- 168 (493)
T ss_dssp HHHHHHHHHHHHTSCCT-T-HHHHHHHHHH----------HHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhChhh-h-HHHHHHHHHH----------HHHH---hccccHHHHHHHHhHHHHHHHHHHHHHHHHHh-
Confidence 55677788888763211 1 1111111111 0000 00001111111111222334444443321000
Q ss_pred CCCHHHHHHHHHHHHcCCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 037477 263 KHNTITYNGILRVLARHES-------VRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPS 335 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (639)
..+...|...+.--...+. .+.+..+|+++.... +.+...|-..+..+.+.|+.++|..+|++.... |.
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~ 244 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SD 244 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CC
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Confidence 0134466666654332211 345677898888753 557888888888889999999999999999876 44
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 037477 336 VQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVI 415 (639)
Q Consensus 336 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 415 (639)
...... .++.... .+.. +..+...+... ..+.+. +. .+ ......|...+
T Consensus 245 ~~~l~~---~y~~~~e--~~~~------------------~~~l~~~~~~~-~~~~~~-----~~-~~-~~~~~lw~~y~ 293 (493)
T 2uy1_A 245 GMFLSL---YYGLVMD--EEAV------------------YGDLKRKYSMG-EAESAE-----KV-FS-KELDLLRINHL 293 (493)
T ss_dssp SSHHHH---HHHHHTT--CTHH------------------HHHHHHHTC-----------------CH-HHHHHHHHHHH
T ss_pred cHHHHH---HHHhhcc--hhHH------------------HHHHHHHHHhh-ccchhh-----hh-cc-cccHHHHHHHH
Confidence 432221 1211110 0110 11121111000 000000 00 00 11124566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA-ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
..+.+.++++.|..+|++. +.. ..+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 6666777788888888887 321 1244444432222222 236888888888887753 22344556667766777888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 495 NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+.|..+|+.+. .....|...++.-...|+.+.+..+++++.+
T Consensus 371 ~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888762 1356777777766677888888888877664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-05 Score=71.61 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
+...+...|++++|...|++.. .|+...|..+...|...|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3444445555555555555442 2445555555555555555555555555555543 2244455555555555555
Q ss_pred hhHHHHHHHHHHHhCCCC-------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 494 VNGAYKLLVEMIEKVRLR-------------P-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~-------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+++|...|+...+...-. | ....+..+..+|.+.|++++|.+.+++..+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555431111 1 124455555566666666666666666655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00015 Score=74.86 Aligned_cols=340 Identities=13% Similarity=0.014 Sum_probs=198.4
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCC
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHES-VRDFWNVVEEMKKE-GY-EMDIDTYIKISRQFQ----KFRM 316 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~-~p~~~~~~~li~~~~----~~g~ 316 (639)
+..+.+..+|++... ..|+...|...+....+.++ .+....+|+..... |. ..+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 668889999988864 24799999998888877663 45677788877654 43 346778888877654 3467
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-----------CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 317 MEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-----------PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
.+.+.++|+.........-...|......-...+. +....+..++......-...+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999999874322212222222211111000 0011112222222211001123355555444322
Q ss_pred cC--C-----hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 386 LG--R-----FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 386 ~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
.+ - .+.+..+|+++.... +.+...|-..+.-+...|++++|..+|++.... ..+...|. .|+...+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 21 1 234667888877653 455777888888888889999999999998877 22332222 2332221
Q ss_pred HHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 037477 459 VDRALLCFAKMMEKN---------YDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFK--TLIEKL 524 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~ 524 (639)
.++. ++.+.+.- ..+ ...+|...+..+.+.+..+.|..+|+.. +..+ .+...|. +.+...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYY 331 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHH
Confidence 1111 33333210 011 1234555666666677899999999988 3212 2334443 333322
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFP----EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK 600 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 600 (639)
. .++.+.|..+|+...+.- |+. ..|..+....|+.+.|..+|+.+. .....|...+..-...|+.+.+.
T Consensus 332 ~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 332 A-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp H-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred H-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 236889999999887642 332 223444467789999999998873 35777888887777789999888
Q ss_pred HHHhhC
Q 037477 601 DLLYKC 606 (639)
Q Consensus 601 ~~~~~m 606 (639)
++++++
T Consensus 405 ~v~~~~ 410 (493)
T 2uy1_A 405 ELVDQK 410 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=82.30 Aligned_cols=193 Identities=10% Similarity=-0.020 Sum_probs=114.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
+...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|...+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455666667777777777777777777665422 56677777777777778888877777777653 335666777777
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh--hcCCHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS--KFGTVED 564 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~g~~~~ 564 (639)
+|...|++++|...|+...+...-.+. .+...+....+. .++.. +..........+.. +...+. ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~-i~~~l~~l~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRI---AKKKR-WNSIEERRIHQESE-LHSYLTRLIAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHH-HHHHHHHHHHHHHHH
Confidence 777888888888877776553111110 011111111111 11111 11122222222222 222221 2577888
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHhhCCc
Q 037477 565 ASEFLKALSVKEYPSSAAYLQVFESFFNE-GRHYEAKDLLYKCPH 608 (639)
Q Consensus 565 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 608 (639)
|.+.++...+..|.+......+...+.+. +.+++|.++|.+...
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888887777776666666666666665 678889999987644
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-06 Score=72.55 Aligned_cols=116 Identities=9% Similarity=-0.057 Sum_probs=95.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+-.+...|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|...|++..+.... +...|..+...|.
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 110 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLC 110 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45567889999999999999999998875 457889999999999999999999999999986533 6788999999999
Q ss_pred HcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 455 AANEVDRALLC-FAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 455 ~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
+.|+.++|.+. +++.++.. +-+..+|......+...|+
T Consensus 111 ~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 111 KNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99998876655 58888764 3466777777666666664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-05 Score=64.01 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=43.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...|+++.+... .+..++..+...|..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 22334444444444555555555555544444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHHc
Q 037477 456 ANEVDRALLCFAKMMEK 472 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~ 472 (639)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 44444444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-05 Score=68.14 Aligned_cols=129 Identities=14% Similarity=0.037 Sum_probs=106.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+... .+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 46667888899999999999999988764 44688899999999999999999999999987653 36788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHH
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLD--VLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
..|++++|...+++..+.. +.+...+. .+...+...|++++|...+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999874 33455553 334447788999999999887643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-05 Score=70.40 Aligned_cols=127 Identities=7% Similarity=-0.070 Sum_probs=108.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+...|++++|.+.|++.. .|+...|..+...|...|++++|...|++..+... .+...|..+...|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 4456677889999999999998773 67889999999999999999999999999987653 367889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 456 ANEVDRALLCFAKMMEKNYD--------------A-DADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|.+.|++..+.... | ....+..+..+|.+.|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999985321 1 1267888889999999999999999998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=68.14 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++..+.. +-+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 335556666677777777777777777665432 56667777777777777777777777777654 2345566666677
Q ss_pred HHcCCChhHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~ 507 (639)
|...|++++|...|+...+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.3e-06 Score=72.88 Aligned_cols=158 Identities=14% Similarity=0.060 Sum_probs=104.3
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANE 458 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~ 458 (639)
...|++++|.++++.+... .......+..+...|...|++++|...+++..+. +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855555432 1234567778888888889999988888887651 1111 23567777788888899
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcC
Q 037477 459 VDRALLCFAKMMEK----NYDA--DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGAR 528 (639)
Q Consensus 459 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g 528 (639)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+...-..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 98888888877663 2111 1344666777888888888888888876643111112 234566777788888
Q ss_pred CHHHHHHHHHHHHh
Q 037477 529 RLEEAMNLLRLMKK 542 (639)
Q Consensus 529 ~~~~A~~~~~~m~~ 542 (639)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.2e-05 Score=72.71 Aligned_cols=165 Identities=10% Similarity=-0.043 Sum_probs=111.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN------ITYSQVIFGLCKAGRFEDACNVLDEMEENGC---IPD--IK 444 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~ 444 (639)
+...+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444666778888999998888877765322 21 1233455566777888888888888765321 122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCC-H
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME---KN-YDA--DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPW-Q 514 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~---~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~-~ 514 (639)
+|+.+...|...|++++|...+++..+ .. ..+ ...++..+...|.+.|++++|...+++..+.. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888888888888888888888773 21 111 12567777888888888888888888765431 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037477 515 ATFKTLIEKLLGARRLEEA-MNLLRLMK 541 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 541 (639)
.+|..+...|.+.|+.++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5777778888888888888 66676654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.8e-05 Score=61.07 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...|..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45667777777788888888888888776542 256677777777788888888888887777754 3456677777777
Q ss_pred HHcCCChhHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~ 507 (639)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 77788888888888777665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=69.86 Aligned_cols=121 Identities=7% Similarity=0.022 Sum_probs=84.6
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG-HCAANEV--D 460 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~--~ 460 (639)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.... +...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45577788888887776654 446677777888888888888888888887765432 56667777777 6677777 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+|...+++..+.. +.+...+..+...|...|++++|...|+...+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888877764 335666777777788888888888888877765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-05 Score=63.51 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=52.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...|..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 22344444555555555555555555555444321 134444444445555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
.|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555544432 123333444444443333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=8.7e-06 Score=68.99 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=64.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...+..+...+...|++++|...|++....... +...|..+..+|...|++++|...|++.++.. +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 344555666667777777777777776655432 56666667777777777777777777776654 2345566666667
Q ss_pred HHcCCChhHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~ 507 (639)
|...|++++|...|+...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00019 Score=68.78 Aligned_cols=173 Identities=8% Similarity=0.000 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-----IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
...+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++..+........
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--- 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---
Confidence 34555677788899999999999988877532211 1224445666778889999999998876532110000
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCC-----HHhHHHH
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA-GFEPD-----NITYSQV 414 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~-----~~~~~~l 414 (639)
.....+++.+...|...|++++|...|++..+. ...|+ ..++..+
T Consensus 152 -----------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 152 -----------------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 001225777888899999999999999887621 00122 1467777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENG----CIP-DIKTWTILIQGHCAANEVDRA-LLCFAKMM 470 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~t~~~li~~~~~~g~~~~a-~~~~~~m~ 470 (639)
...|...|++++|...+++..+.. ... -..+|..+...|.+.|+.++| ...+++..
T Consensus 203 g~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788888888888888887765421 111 145667777777777777777 66566554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-05 Score=62.43 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+......|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444444445555555555444443221 34444444445555555555555555544432 2234444444445555
Q ss_pred CCChhHHHHHHHHHHH
Q 037477 491 QKRVNGAYKLLVEMIE 506 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~ 506 (639)
.|++++|...|+...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-05 Score=61.88 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=51.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34445555555555555555555555443 334455555555555555555555555555544322 3445555555555
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 037477 455 AANEVDRALLCFAKMMEK 472 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~ 472 (639)
..|++++|.+.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-05 Score=64.01 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
..+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 344555555566666666666666655442 224455555555555556666666655555543321 344555555555
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 037477 454 CAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~ 472 (639)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.20 E-value=9e-05 Score=62.69 Aligned_cols=104 Identities=9% Similarity=-0.043 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
+...+..+...+.+.|++++|...|++.++.. +-+...|..+..+|...|++++|...|++..+...- +...|..+-
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHH
Confidence 34567788888999999999999999999875 457888999999999999999999999999876332 355788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPE 550 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 550 (639)
.+|.+.|++++|.+.|++..+. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999873 35543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-05 Score=62.73 Aligned_cols=119 Identities=8% Similarity=-0.045 Sum_probs=86.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
.+...|..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34566777888888888888888888888775432 67778888888888888888888888888764 34677777888
Q ss_pred HHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 528 (639)
.+|.+.|++++|...|++..+...- +...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhc
Confidence 8888888888888888887765211 2334555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.5e-05 Score=60.66 Aligned_cols=119 Identities=11% Similarity=-0.056 Sum_probs=90.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
+...+..+...+...|++++|...|++...... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 445677777888888999999999888876543 267788888888888899999998888888764 345777788888
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
.|...|++++|...|++..+.. ..+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 8888888888888888887652 1245566666666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00095 Score=64.39 Aligned_cols=221 Identities=10% Similarity=0.071 Sum_probs=156.9
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-C
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA-N-E 458 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g-~ 458 (639)
...+.+..++|+++++.+.... +-+...|+.--..+...| .+++++..++.+.....+ +...|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344556678999999998875 445667887777777788 599999999999987755 778888877777776 6 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh--------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN--------GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR- 529 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~- 529 (639)
+++++++++++.+.. +-|...|+.-.-.+.+.|.++ +++++++++.+.. .-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcccc
Confidence 899999999999875 347777776555555555555 8999999998862 2366677777777777775
Q ss_pred ------HHHHHHHHHHHHhCCCCCChH-hH---HHHHhhcCCH--------------------HHHHHHHHHhhcCC---
Q 037477 530 ------LEEAMNLLRLMKKQNYPPFPE-PF---VQYISKFGTV--------------------EDASEFLKALSVKE--- 576 (639)
Q Consensus 530 ------~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~~--------------------~~a~~~~~~~~~~~--- 576 (639)
++++++.++++... .|+.. .+ ..++.+.|+. .+...+...+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 78899999888873 35443 22 3344455443 23333333333222
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 577 ---YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 577 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
.+++.....|++.|...|+.++|.++++.+..+
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 578889999999999999999999999997533
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0012 Score=63.71 Aligned_cols=225 Identities=9% Similarity=0.057 Sum_probs=133.0
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR-MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
...+.+..++|+++++.+.... +-+..+|+.--..+...| .+++++++++.+.... |..
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKn----------------- 122 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKS----------------- 122 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCC-----------------
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCc-----------------
Confidence 3344455567888888887764 335566777666666677 4888888888776542 211
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-C-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH------
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKL-G-RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE------ 425 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~------ 425 (639)
..+|+.-...+.+. + ++++++++++.+.+.. +.+...|+--...+.+.|.++
T Consensus 123 -------------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 123 -------------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp -------------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred -------------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 11222222222222 3 5677778888777654 446667766555555555555
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh--
Q 037477 426 --DACNVLDEMEENGCIPDIKTWTILIQGHCAANE-------VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV-- 494 (639)
Q Consensus 426 --~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-- 494 (639)
++++.++++.+.... |...|+.....+.+.+. ++++++.+++++... +-|...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcc
Confidence 788888888876654 77778777777766665 677888888777764 44677776666556655543
Q ss_pred ------------------hHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 495 ------------------NGAYKLLVEMIEKV----RLRPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 495 ------------------~~A~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.....+..++.... .-.+.......+++.|...|+.++|.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222222221110 002345556666666666666666666666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.4e-05 Score=64.07 Aligned_cols=104 Identities=8% Similarity=-0.123 Sum_probs=69.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...|..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...+++.++.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445566666677777777777777776665422 56667777777777777777777777777664 3356667777777
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW 513 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~ 513 (639)
|...|++++|...|++..+...-.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 77777777777777777665333333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00012 Score=68.27 Aligned_cols=206 Identities=12% Similarity=0.021 Sum_probs=125.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 278 RHESVRDFWNVVEEMKKEGYEMDIDTYIKIS-------RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-------~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
..++.+.|.+.|.+..+.. +-....|..++ ..+...++..+++..+..-. ++.|+......-| .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~-----~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI-----GG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC-----CT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc-----CC
Confidence 5789999999999998874 33567777663 34444444444443333332 2233221000000 00
Q ss_pred C-CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 351 N-PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
- +| ....+.--....-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+.
T Consensus 90 ~y~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 90 LYGD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp TTCC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH
Confidence 0 00 000000112234456677888899999999998887653 443355555567888899999999
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 430 VLDEMEENGCIPDI----KTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD--ADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 430 ~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
.|+..... |+. ..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|++
T Consensus 157 ~l~~a~~~---~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 157 QVKSAGKW---PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHTTGGGC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhcc---CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88755442 222 3566777888888888888888888875433243 23455556677888888888888888
Q ss_pred HHHh
Q 037477 504 MIEK 507 (639)
Q Consensus 504 m~~~ 507 (639)
+...
T Consensus 234 a~a~ 237 (282)
T 4f3v_A 234 LQTT 237 (282)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00014 Score=67.78 Aligned_cols=195 Identities=8% Similarity=-0.102 Sum_probs=133.7
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQV-------IFGLCKAGRFEDACNVLDEMEENGCIPD--------------- 442 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 442 (639)
..++...|.+.|.+..+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999998874 3456677776 4555555555665555554433 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC--
Q 037477 443 -------IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-- 513 (639)
Q Consensus 443 -------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-- 513 (639)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 2234456677888999999999998887654 44435555566788999999999999854321 1 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVF 587 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 587 (639)
...+..+-.++.+.|++++|+..|++.......|... .....+.+.|+.++|...|+++....|. ...+..|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 2356677788999999999999999987544325411 2233446889999999999999887665 66555553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.2e-05 Score=68.49 Aligned_cols=161 Identities=8% Similarity=0.014 Sum_probs=97.7
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhH
Q 037477 277 ARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGL 356 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 356 (639)
...|++++|.++++.+... .......+..+...+...|++++|+..+++..+. +.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------~~--------- 57 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQ---------------AQ--------- 57 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH---------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH---------------HH---------
Confidence 4568888888855555432 1235667888888888899999998888877541 00
Q ss_pred HHHHHHHHHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC--CHHhHHHHHHHHHhcCCHHHHHH
Q 037477 357 VFRVANKYESLGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA----GFEP--DNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
..+.. ....++..+...|...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|..
T Consensus 58 ---------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 58 ---------KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp ---------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---------HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 00110 11234666777888888888888888776543 1111 13346667777777888888888
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 430 VLDEMEENGC-IPD----IKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 430 ~~~~m~~~~~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
.+++..+... ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 129 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 129 EYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 8777653210 011 12345566666777777777777666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.09 E-value=6.6e-05 Score=73.51 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEK 523 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 523 (639)
..|..+..+|.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+.. .-+...+..+...
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 445555555555555555555555555543 2244455555555555555555555555554431 1123344445555
Q ss_pred HHhcCCHHHH
Q 037477 524 LLGARRLEEA 533 (639)
Q Consensus 524 ~~~~g~~~~A 533 (639)
+.+.|+.++|
T Consensus 274 ~~~~~~~~~a 283 (336)
T 1p5q_A 274 QQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.2e-05 Score=65.81 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=96.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--h
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING-FLSQKRV--N 495 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 495 (639)
...|++++|...+++..+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 456888999999998877653 367889999999999999999999999998865 3467777788888 7789998 9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
+|...|+...+.. .-+...+..+...|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999998762 224667888888999999999999999998874
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00015 Score=70.86 Aligned_cols=132 Identities=16% Similarity=0.055 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--------------NITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666777777777777777777766532111 3667777777777777777777777776654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH-HHHHHHHHH
Q 037477 439 CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA-YKLLVEMIE 506 (639)
Q Consensus 439 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 506 (639)
.. +...|..+..+|...|++++|...|++.++.. +-+...+..+..++.+.|+.++| ..+|..|..
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 56677777777777777777777777777654 33556666666677777776666 345555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00023 Score=56.72 Aligned_cols=93 Identities=10% Similarity=-0.046 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+...|++++|...|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 33344444444444444444444443321 134444444444444555555555554444432 2234444444445555
Q ss_pred CCChhHHHHHHHHHH
Q 037477 491 QKRVNGAYKLLVEMI 505 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~ 505 (639)
.|++++|...|+...
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00031 Score=66.68 Aligned_cols=187 Identities=13% Similarity=0.040 Sum_probs=128.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3456677888999999999999999998874 347888999999999999999999999999886533 67889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037477 453 HCAANEVDRALLCFAKMMEKNY----DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 528 (639)
|...|++++|...|++..+.+. ..+...+..+ .. .++.. +...... ....+......+ ..+ ..|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~------~~~~~-~~~~~~~-~~~~~~~i~~~l-~~l-~~~ 149 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RI------AKKKR-WNSIEER-RIHQESELHSYL-TRL-IAA 149 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HH------HHHHH-HHHHHHT-CCCCCCHHHHHH-HHH-HHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HH------HHHHH-HHHHHHH-HHhhhHHHHHHH-HHH-HHH
Confidence 9999999999999999887421 1111122111 11 11112 1222222 333343333333 223 268
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHH----HHHhhc-CCHHHHHHHHHHhhcC
Q 037477 529 RLEEAMNLLRLMKKQNYPPFPEPFV----QYISKF-GTVEDASEFLKALSVK 575 (639)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~-g~~~~a~~~~~~~~~~ 575 (639)
+.++|++.++...+ ..|+..... .++... +.+++|.++|.+..+.
T Consensus 150 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 150 ERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88999998887776 456654432 233333 6788899999887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00022 Score=58.10 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
.|..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444445555555555555555555544321 44555555555555666666666555555543 223455555555555
Q ss_pred cCCChhHHHHHHHHHHH
Q 037477 490 SQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~ 506 (639)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 56666666655555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00013 Score=61.12 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++.++.. +.+...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 344445555666666666666665554322 45555556666666666666666666666553 2244455555556666
Q ss_pred CCChhHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666655543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.9e-05 Score=64.92 Aligned_cols=98 Identities=14% Similarity=-0.047 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
+...+..+...+...|++++|...|++.+... +.+...|..+..+|...|++++|...|+.......- +...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHH
Confidence 44566777888889999999999999988875 447788888888899999999999999998876322 345777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 037477 522 EKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.+|...|++++|.+.|++..+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999988876
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00024 Score=58.06 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN--YDAD----ADLLDV 483 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~~ 483 (639)
.+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444555555555555555555555544322 34555555555555555555555555554421 1111 123444
Q ss_pred HHHHHHcCCChhHHHHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+-.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00024 Score=57.83 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
..+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 346667788899999999999999998875 457888999999999999999999999999887543 678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 037477 454 CAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~ 472 (639)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998875
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00013 Score=57.66 Aligned_cols=94 Identities=10% Similarity=0.104 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA--DADLLDVLINGF 488 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~ 488 (639)
+..+...+...|++++|...|++..+... .+...|..+...+...|++++|...+++..+.. +. +...+..+..+|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 33344444444444444444444443321 133344444444444444444444444444432 11 234444444444
Q ss_pred HcC-CChhHHHHHHHHHHH
Q 037477 489 LSQ-KRVNGAYKLLVEMIE 506 (639)
Q Consensus 489 ~~~-g~~~~A~~~~~~m~~ 506 (639)
... |++++|.+.|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=69.70 Aligned_cols=155 Identities=8% Similarity=-0.102 Sum_probs=87.2
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD---------------IKTWT 447 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~t~~ 447 (639)
....|+++++.+.++.-.+.. ......+..+...+...|++++|...|++..+....-. ...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334455555555554322110 11234566667777788888888888888776432211 25677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
.+..+|...|++++|...+++.++.. +.+...+..+..+|...|++++|...|+...+.. .-+...+..+...+...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHH
Confidence 77777777888888888887777764 3456677777777777888888888887776652 12344556665666555
Q ss_pred CCHHHHH-HHHHHHH
Q 037477 528 RRLEEAM-NLLRLMK 541 (639)
Q Consensus 528 g~~~~A~-~~~~~m~ 541 (639)
++.+++. ..+..|.
T Consensus 170 ~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 170 KEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHh
Confidence 5555554 3444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0015 Score=66.37 Aligned_cols=199 Identities=6% Similarity=-0.014 Sum_probs=107.3
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-CCCCCHH
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMD----------------IDTYIKISRQFQKFRMMEDAVKLFEFMMDG-PYKPSVQ 337 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ 337 (639)
.+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45566777777777777766421110 124667788888888888888888776542 0001110
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH----CCCCCC-HHhHH
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN----AGFEPD-NITYS 412 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~ 412 (639)
+.. .+.+.+-..+...|+.++|.+++..... .+..+. ..++.
T Consensus 93 ~~~---------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 93 TVK---------------------------------VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHH---------------------------------HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred HHH---------------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 000 0112222233344666666666655432 122222 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEEN--GC--IP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK--NYDAD----ADLL 481 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~----~~~~ 481 (639)
.+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..++++.... .+..+ ...+
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 6666677777777777776665432 11 11 1345666666777777777777776665541 11111 2334
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
..+...+...|++++|...|.+..+
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555666777777666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00058 Score=54.32 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=46.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|.+.|+...... +.+...+..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34444445555555555555555554432 223444444555555555555555555555443221 3444455555555
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 037477 455 AANEVDRALLCFAKMMEK 472 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~ 472 (639)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00026 Score=57.93 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC-CCCC----HHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR-LRPW----QATF 517 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~----~~~~ 517 (639)
...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|+...+... ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3466778888999999999999999998875 44678888888899999999999999988765411 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 518 KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
..+-.++...|++++|++.|++..+ ..|+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 6677778888888888888888776 3355443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00016 Score=59.02 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY--DAD----ADLLDV 483 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 483 (639)
.|..+...+...|++++|...|++..+... .+...+..+...|...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444555555555555555555544331 1344555555555555555555555555544321 111 344455
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHh
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+..+|...|++++|...|+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555565555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00035 Score=57.72 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=47.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
+...|..+...+...|++++|...|++....... +...|..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444444555555555555555555554443321 34445555555555555555555555555443 223444445555
Q ss_pred HHHcCCChhHHHHHHHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~ 505 (639)
+|...|++++|...|+...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00055 Score=57.28 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI 448 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 448 (639)
...+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|...+++..+.... +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 345555666667777777777777776654 344 455666666666667777777666666554321 4555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 449 LIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 449 li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
+..+|...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666666666666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00018 Score=60.26 Aligned_cols=96 Identities=14% Similarity=0.025 Sum_probs=83.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++....... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 44556778889999999999999998875 457888999999999999999999999999887643 6678888999999
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 037477 455 AANEVDRALLCFAKMMEK 472 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~ 472 (639)
..|++++|...|++.++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00077 Score=68.46 Aligned_cols=194 Identities=11% Similarity=0.049 Sum_probs=129.5
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPD----------------NITYSQVIFGLCKAGRFEDACNVLDEMEENG-CIPDI 443 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 443 (639)
..+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456778999999999999887532211 1236778899999999999999998875421 11222
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC---C
Q 037477 444 K----TWTILIQGHCAANEVDRALLCFAKMME----KNYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL---R 511 (639)
Q Consensus 444 ~----t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~ 511 (639)
. +.+.+-..+...|+.+.|..++..... .+..+. ..++..+...|...|++++|..++++......- .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 223333344457889999998887765 222332 456778888999999999999999987654221 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChH---hH----HHHHhhcCCHHHHHHHHHHhhc
Q 037477 512 PW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ--NYPPFPE---PF----VQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 512 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~---~~----~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
+. ...|..++..|...|++++|..++++.... .+..+.. .+ ..+....|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 567888889999999999999999887642 1221111 11 1112466889998887766643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0003 Score=58.13 Aligned_cols=100 Identities=14% Similarity=0.015 Sum_probs=87.8
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 371 LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 371 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
.+...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...+++..+.... +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 345677888899999999999999999988775 446788999999999999999999999999886543 678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 037477 451 QGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
..|...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998874
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00032 Score=60.31 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4457778889999999999999999998875 447888999999999999999999999999887543 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 037477 453 HCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g 473 (639)
|...|++++|...|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998853
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=59.15 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC--IPD----IKTWT 447 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~t~~ 447 (639)
..+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 346678888999999999999999998775 45678888999999999999999999999876532 122 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
.+...+...|++++|.+.|++..+.. |+......+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 89999999999999999999999864 466555544433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00022 Score=56.24 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PDIKTWTILIQ 451 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~ 451 (639)
...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.... .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456678888999999999999999998775 446788889999999999999999999999876421 15788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHcC
Q 037477 452 GHCAA-NEVDRALLCFAKMMEKN 473 (639)
Q Consensus 452 ~~~~~-g~~~~a~~~~~~m~~~g 473 (639)
.+... |++++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999998864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.011 Score=56.77 Aligned_cols=195 Identities=8% Similarity=0.014 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG--RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE-VDRALLC 465 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~-~~~a~~~ 465 (639)
+++++.+++.+.... +-+..+|+.-...+.+.| .+++++.+++++.+.... |...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567788888887664 457778887777777777 488999999998887654 78888877777777787 6888999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC--------------CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 037477 466 FAKMMEKNYDADADLLDVLINGFLSQ--------------KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA---- 527 (639)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---- 527 (639)
++++++.. +-|...|+.....+.+. +.++++++.++...... +-|...|+-+--.+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCcc
Confidence 99988876 44777776665554443 44778888888877652 22455665444444443
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCChH-hHHHH------HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 037477 528 -------RRLEEAMNLLRLMKKQNYPPFPE-PFVQY------ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESF 590 (639)
Q Consensus 528 -------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l------l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (639)
+.++++++.++++.+ ..|+.. .+..+ +...|..++...++.++.+.+|....-|..+...+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 356788888888876 445532 11111 12356777788888888887777777777665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00019 Score=61.09 Aligned_cols=132 Identities=13% Similarity=-0.010 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWTILIQGHCAANEVDRALLCFAKMMEKNY-DAD----ADL 480 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~ 480 (639)
+..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+... ..+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444445555555555555544321100 01 12455555556666666666666655544210 001 234
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+..+...+...|++++|...+++..+...-..+ ...+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555666666666666666655432110111 23455566666777777777777766553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00038 Score=62.02 Aligned_cols=130 Identities=11% Similarity=-0.044 Sum_probs=97.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD---------------NITYSQVIFGLCKAGRFEDACNVLDEMEENGC 439 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 439 (639)
.+..+...+...|++++|.+.|++..+...... ...|..+..+|.+.|++++|+..+++..+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 355577788899999999999999987531111 26788889999999999999999999988653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH-HHHHHHHH
Q 037477 440 IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAY-KLLVEMIE 506 (639)
Q Consensus 440 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 506 (639)
.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++.+++. ..|..|..
T Consensus 120 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367889999999999999999999999999874 346777777777777777766665 44554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0012 Score=55.22 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=74.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD----IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.+...+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 355667777788888888888888888887653 55 5677777777888888888888888877763 3356667
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..+..+|...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777778888888888888877665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.032 Score=53.42 Aligned_cols=224 Identities=10% Similarity=0.048 Sum_probs=147.0
Q ss_pred HcCCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 277 ARHESVR-DFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM----------MEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 277 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
.+.|.++ +|+++++.+.... +-+...|+.=-..+...+. +++++.+++.+...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---------------
Confidence 3455554 7899999888764 2244456543333322222 44555555555432
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG--RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
.+-+..+|+.-...+...| ++++++.+++.+.+.. +.|...|+--...+...|.
T Consensus 104 -----------------------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 104 -----------------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp -----------------------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCc
Confidence 1123334444444455556 4789999999998876 5578888887777888888
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 424 -FEDACNVLDEMEENGCIPDIKTWTILIQGHCAA--------------NEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 424 -~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
++++++.++++.+..+. |...|+.....+.+. +.++++++.+...+... +-|...|+-+-..+
T Consensus 160 ~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 160 APAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 58999999999987765 788888776666655 45788999999998875 45777777555555
Q ss_pred HcC-----------CChhHHHHHHHHHHHhCCCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037477 489 LSQ-----------KRVNGAYKLLVEMIEKVRLRPWQATFKT--LI---EKLLGARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 489 ~~~-----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~--li---~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
.+. +.++++++.++++.+. .|+. .|.. ++ .+....|..+++...++++.+ +.|.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~---~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~ 307 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQEL---EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 307 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGG
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhh---Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcc
Confidence 554 4578899999999876 4553 2322 22 222346777888888888876 4454
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00017 Score=61.41 Aligned_cols=133 Identities=16% Similarity=0.099 Sum_probs=100.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-PD----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IK 444 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~ 444 (639)
++..+...|...|++++|.+.+++..+.... ++ ...+..+...+...|++++|...+++..+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5667888889999999999999887654211 11 146778889999999999999999987642110 12 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEK----NYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...|...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778888999999999999999988763 211 11345677788899999999999999987653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.8e-05 Score=60.35 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAG--FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
|++++|+..|++..+.+ -+.+...|..+...|...|++++|...|++..+.... +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555554444332 0112233444444444444444444444444443322 23344444444444444444444
Q ss_pred HHHHHHH
Q 037477 465 CFAKMME 471 (639)
Q Consensus 465 ~~~~m~~ 471 (639)
.+++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00033 Score=56.68 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
.+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+...|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34455566666666666666666543 234555666666666666666666666666654322 4455666666666666
Q ss_pred CHHHHHHHHHHHHH
Q 037477 458 EVDRALLCFAKMME 471 (639)
Q Consensus 458 ~~~~a~~~~~~m~~ 471 (639)
++++|...+++.++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00042 Score=56.05 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|...|++.++.. +-+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334455566667777777777766654422 55666666666666777777777776666654 2245566666666666
Q ss_pred CCChhHHHHHHHHHHH
Q 037477 491 QKRVNGAYKLLVEMIE 506 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~ 506 (639)
.|++++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00024 Score=73.19 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=83.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3345677888888888888887763 345777888888888888888888888888876432 56778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHcCCChhHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLING--FLSQKRVNGAYKLLVE 503 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~ 503 (639)
+++|.+.+++..+... -+...+..+..+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888888877532 123334444334 6777788888877764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0025 Score=51.70 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=46.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDN---ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD---IKTWTILIQG 452 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~ 452 (639)
+...+...|++++|.+.|+...+.. +.+. ..+..+..++.+.|++++|...|++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3344555566666666666555442 1112 24444555555555565555555555543311 1 3344445555
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 037477 453 HCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~ 472 (639)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00025 Score=73.05 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=73.0
Q ss_pred CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 037477 352 PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVL 431 (639)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 431 (639)
.+.+.+...+.+..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 20 g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~ 97 (477)
T 1wao_1 20 KDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDY 97 (477)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666666665542 2246677777888888888888888888887764 345667777788888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 037477 432 DEMEENGCIPDIKTWTILIQG--HCAANEVDRALLCFAK 468 (639)
Q Consensus 432 ~~m~~~~~~p~~~t~~~li~~--~~~~g~~~~a~~~~~~ 468 (639)
++..+.... +...+..+..+ +.+.|++++|.+.+++
T Consensus 98 ~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 98 ETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 887765322 23344444444 6677777777777654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00021 Score=57.44 Aligned_cols=106 Identities=13% Similarity=0.029 Sum_probs=80.0
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 420 KAGRFEDACNVLDEMEENGC--IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
..|++++|+..|++..+.+. .-+...|..+...|...|++++|...+++.++.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35888999999999887641 1245678888889999999999999999999875 34678888888999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
...|++..+...-.|+...|...+..|.+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999888765555556666666666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0024 Score=51.81 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDI---KTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD---ADLLDVLIN 486 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~ 486 (639)
.+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...+++..+... .+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 3455666777777887777777664322 22 3566667777777777777777777776532 12 455666666
Q ss_pred HHHcCCChhHHHHHHHHHHHh
Q 037477 487 GFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+|...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0014 Score=64.91 Aligned_cols=136 Identities=13% Similarity=0.029 Sum_probs=68.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+.+.|++++|.+.|++..+.- +.. ......+++ .+.. ..+...|..+..+|.+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHHHh
Confidence 5556667777777777777777765410 000 000000000 0000 0133455555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 534 (639)
.|++++|.+.+++.++.. +-+...+..+..+|...|++++|...|++..+. .| +...+..+...+...++.+++.
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665543 224555555556666666666666666665544 22 3444455555555555555544
Q ss_pred H
Q 037477 535 N 535 (639)
Q Consensus 535 ~ 535 (639)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0025 Score=65.18 Aligned_cols=129 Identities=14% Similarity=0.039 Sum_probs=81.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--------------IKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
...|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777777777777777777665322111 4667777777777777777777777777754
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 037477 474 YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMN-LLRLM 540 (639)
Q Consensus 474 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~-~~~~m 540 (639)
+.+...|..+..+|...|++++|...|++..+. .|+ ...+..+..++.+.|+.+++.. ++..|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777777777777777777777653 332 3355566666666666665543 33433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0024 Score=54.49 Aligned_cols=63 Identities=8% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 455566666666666666666666666653 334556666666666666666666666666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0017 Score=66.34 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=102.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--------------NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI 440 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (639)
.+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+....
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 466778889999999999999999887531111 578889999999999999999999999886543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH-HHHHHH
Q 037477 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK-LLVEMI 505 (639)
Q Consensus 441 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 505 (639)
+...|..+..+|...|++++|...|++.++.. +-+...+..+..++.+.++.+++.+ ++..|.
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999864 3355677778888888888877653 444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0029 Score=54.01 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=82.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHC--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNA--------G---------FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
.+......+.+.|++++|...|....+. . -+.+...|..+..+|.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4556778889999999999999988764 1 0123457888899999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 438 GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 438 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
... +...|..+..+|...|++++|...|++.++..
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 533 67899999999999999999999999999874
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0028 Score=62.60 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
.+..+...+.+.|++++|+..|++..+.- +.. ......+.+ .+.. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHHH
Confidence 46667788888999999999888877520 000 001111111 1110 124567888889999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH----hhcCCHHH
Q 037477 490 SQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI----SKFGTVED 564 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll----~~~g~~~~ 564 (639)
+.|++++|+..+++..+. .| +...|..+..+|...|++++|++.|++..+. .|+.......+ ...++.++
T Consensus 285 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 34 4778888999999999999999999999873 45544333222 34455555
Q ss_pred HH
Q 037477 565 AS 566 (639)
Q Consensus 565 a~ 566 (639)
+.
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0015 Score=66.92 Aligned_cols=132 Identities=12% Similarity=0.016 Sum_probs=82.2
Q ss_pred HHHcCCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 275 VLARHESVRDFWNVVEEMKKE---GYEM----DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 356789999999999887652 1122 3567999999999999999999999877531
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHhHHHHHHHHHh
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN-----AGFE-PD-NITYSQVIFGLCK 420 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-~~-~~~~~~li~~~~~ 420 (639)
.........+....+++.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++..
T Consensus 381 -------------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 -------------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp -------------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11111111112234577777778888888888777776543 1211 11 1223334445555
Q ss_pred cCCHHHHHHHHHHHHH
Q 037477 421 AGRFEDACNVLDEMEE 436 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (639)
.+.+++|+.+|.++++
T Consensus 448 ~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 448 LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0018 Score=51.59 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444332 223444444444444455555555555444443211 23344444444444444444444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0012 Score=64.47 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+ . ...|..+..+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHHH
Confidence 555677788889999999999887754 343321 11223333332221 1 1366777777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEK-LLGARRLEEA 533 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A 533 (639)
.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+...+. .|+ ...+..+... ....+..+++
T Consensus 243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777764 336677777777888888888888888776543 333 2233333333 2234566677
Q ss_pred HHHHHHHHh
Q 037477 534 MNLLRLMKK 542 (639)
Q Consensus 534 ~~~~~~m~~ 542 (639)
..+|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777777765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=66.76 Aligned_cols=125 Identities=12% Similarity=0.000 Sum_probs=67.5
Q ss_pred HHHccCChhHHHHHHHHHHHCC---C---CCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAG---F---EPD-NITYSQVIFGLCKAGRFEDACNVLDEMEE-----NGCI-PD-IKTWT 447 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g---~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~-~~t~~ 447 (639)
.+...|++++|+.++++..+.. + .|+ ..+++.|...|...|++++|..++++..+ .|.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677777777776655421 1 111 24566666777777777777776666542 1211 11 24566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMME-----KNYD-A-DADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
.|...|...|++++|..++++.++ .|.. | ...+.+.+-.++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665544 1211 1 122233444455555556666666655544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.012 Score=49.24 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCC--------H-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 037477 377 DGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--------N-----ITYSQVIFGLCKAGRFEDACNVLDEMEEN-----G 438 (639)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 438 (639)
......+.+.|++++|...|++..+.. |+ . ..|+.+..++.+.|++++|+..+++..+. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 334455666677777777777666542 22 1 14555555555555555555555555543 0
Q ss_pred CCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 439 CIPD-IKTW----TILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 439 ~~p~-~~t~----~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0222 2344 4444555555555555555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0071 Score=50.70 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCI-P-----DI-----KTWTILIQGHCAANEVDRALLCFAKMMEK-----N 473 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-----~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g 473 (639)
.+......+.+.|++++|+..|++..+.... | +. ..|+.+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3455566677788888888888887764322 0 11 25666666666666666666666666553 0
Q ss_pred CCC-CHHHH----HHHHHHHHcCCChhHHHHHHHHH
Q 037477 474 YDA-DADLL----DVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 474 ~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m 504 (639)
+.| +...| ...-.++...|++++|+..|+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 122 22333 44444445555555555555444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.011 Score=48.82 Aligned_cols=109 Identities=13% Similarity=-0.047 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVDRAL 463 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~ 463 (639)
++++|.+.|++..+.| .++.. |-..|...+.+++|.+.|++..+.| +...+..+-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 22222 4444555555666666666665543 44555555555555 55666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHh
Q 037477 464 LCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 507 (639)
+.|++..+.| +...+..|-..|.. .+++++|..+|+...+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6666665554 34444555555555 45555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00063 Score=53.62 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hH---HHHHhhcCCHHHHHHHHHHhhcCCCCC------HHHHHH
Q 037477 516 TFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PF---VQYISKFGTVEDASEFLKALSVKEYPS------SAAYLQ 585 (639)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 585 (639)
.|..+...+...|++++|++.+++..+. .|+.. .+ ...+...|++++|...+++..+..|.+ ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3444444444555555555555544442 12211 11 112234455555555555555554444 555666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCc
Q 037477 586 VFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
+..++...|++++|.+.+++++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHhHhhhHhHHHHhHH
Confidence 66666667776666666666544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.021 Score=47.06 Aligned_cols=112 Identities=12% Similarity=-0.054 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGA 497 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 497 (639)
+++++|+..|++..+.|. |+.. +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 467788888888887762 3333 6666667777888888888888876 56677777777777 7788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLG----ARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 545 (639)
..+|+...+. | +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 81 ~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888765 3 45566677777777 7788888888888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0022 Score=62.63 Aligned_cols=142 Identities=8% Similarity=0.047 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
...+..+...+.+.|++++|...|++.++.. |+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 4567777778888889999999998887753 43321 12223333322211 1 115555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-HhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-HhcCCHH
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPFP-EPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESF-FNEGRHY 597 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 597 (639)
+|.+.|++++|+..+++..+. .|+. ..+ ...+...|++++|...|++..+..|.+...+..+.... ...+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777666652 2322 111 22234567777777777777666666666666665553 3345556
Q ss_pred HHHHHHhhC
Q 037477 598 EAKDLLYKC 606 (639)
Q Consensus 598 ~A~~~~~~m 606 (639)
++.+++++|
T Consensus 317 ~a~~~~~~~ 325 (338)
T 2if4_A 317 KQKEMYKGI 325 (338)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 666666665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0066 Score=48.11 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+|+..|++..+... .+...+..+...|...|++++|...+++.++.. +.+...|..+..+|...|++++|...|+...
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777766543 256777788888888888888888888888764 3456677777888888888888888888776
Q ss_pred Hh
Q 037477 506 EK 507 (639)
Q Consensus 506 ~~ 507 (639)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0015 Score=51.34 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.|..+...+...|++++|...|++..+.... +...|..+..+|...|++++|.+.+++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444444555555555555555555443221 3444555555555555555555555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=44.19 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444555555555555555554432 22344444455555555555555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.062 Score=56.24 Aligned_cols=175 Identities=9% Similarity=0.008 Sum_probs=126.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 280 ESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM----------MEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
..-++|++.++.+.... +-+...|+.--.++...|+ ++++++.++.+.+.. |
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--p--------------- 104 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--P--------------- 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--T---------------
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--C---------------
Confidence 34567899999998874 3355667766555555555 777777777776431 1
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG--RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFED 426 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~ 426 (639)
-+..+|+.-.-++.+.| +++++++.++++.+.. +.+...|+.-...+.+.| .+++
T Consensus 105 ---------------------K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~ 162 (567)
T 1dce_A 105 ---------------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (567)
T ss_dssp ---------------------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred ---------------------CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHH
Confidence 12334444445566677 6799999999999876 457888888888888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 427 ACNVLDEMEENGCIPDIKTWTILIQGHCAA--------------NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 427 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
+++.++++.+..+. |...|+.....+.+. +.++++.+.+++.+... +-|...|+-+-..+.+.+
T Consensus 163 el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCC
Confidence 99999999887655 788888877776663 45788899998888865 446777877777777777
Q ss_pred ChhH
Q 037477 493 RVNG 496 (639)
Q Consensus 493 ~~~~ 496 (639)
+.++
T Consensus 241 ~~~~ 244 (567)
T 1dce_A 241 PHDV 244 (567)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 6444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.043 Score=57.44 Aligned_cols=135 Identities=8% Similarity=-0.072 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQK--RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR-RLEEAMN 535 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~ 535 (639)
++++++.++.+.+.. +-+..+|+.--..+.+.| +++++++.++.+.+.. .-+...|+.---.+.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHH
Confidence 455555555555443 223444444444444445 3455555555555441 113334444333344444 4555555
Q ss_pred HHHHHHhCCCCCC-hHhHH---HHHhh--------------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 536 LLRLMKKQNYPPF-PEPFV---QYISK--------------FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 536 ~~~~m~~~~~~p~-~~~~~---~ll~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
.++++.+.. |+ ...|. .++.. .+.++++.+++++.....|.+...|..+...+.+.|+.+
T Consensus 166 ~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 166 FTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHC--CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 555554422 21 11111 11111 245788999999988889999999999999998888855
Q ss_pred H
Q 037477 598 E 598 (639)
Q Consensus 598 ~ 598 (639)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.014 Score=43.45 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444555555556666666655555543321 3445555555555555555555555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0069 Score=46.68 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555555554443322 23344445555555555555555554444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=45.33 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
+...+..+..+|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555566666666666666666665543 2234455556666666666666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0096 Score=49.78 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=56.4
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF----------EDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
.+.+.+++|.+.++...+.. +.+...|+.+..++...+++ ++|+..|++..+.... +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34456777788887777664 44677777777777776654 4777777777665432 455666677777
Q ss_pred HHcC-----------CHHHHHHHHHHHHHc
Q 037477 454 CAAN-----------EVDRALLCFAKMMEK 472 (639)
Q Consensus 454 ~~~g-----------~~~~a~~~~~~m~~~ 472 (639)
...| ++++|.+.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 566666666666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0099 Score=49.71 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=63.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV----------DRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
.+.+.+++|...++...+.... +...|+.+..++...+++ ++|+..|++.++.. +-+...|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3556778888888888876543 677787777777777654 47777777777764 23556667777777
Q ss_pred HcCC-----------ChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 489 LSQK-----------RVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 489 ~~~g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
...| ++++|...|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 6653 566666666666543 45544444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.062 Score=59.38 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=22.3
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
..|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345555555553322 234455555555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.031 Score=56.09 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=64.5
Q ss_pred cCCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 278 RHESVRDFWNVVEEMKKE---GYEM----DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
..|++++|..++++..+. -+.| ...+++.+..+|...|++++|+.++++..+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 457899999999887652 1222 2577999999999999999999999987531
Q ss_pred CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 351 NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
.........+....+++.+...|...|++++|+.++++..
T Consensus 370 ----------~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 370 ----------YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp ----------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111111123457778888888888888888877765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.056 Score=54.24 Aligned_cols=92 Identities=14% Similarity=0.019 Sum_probs=59.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CC-CHHH
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENG---CIP----DIKTWTILIQGHCAANEVDRALLCFAKMME-----KNY-DA-DADL 480 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~---~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~ 480 (639)
+..+.+.|++++|+.++++..+.. ..| ...+++.+...|...|++++|+.++++.++ .|. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888887776421 112 235677777788888888888888777665 121 11 2345
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777777778888777777776543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.45 Score=45.85 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 475 DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
+.+..+|.++...+...|++++|...+++.... .|+...|..+-..+.-.|++++|.+.+++... +.|...+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 345555555555555556666666666666654 25555555555555666666666666666555 3344444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.04 Score=55.28 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHh----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEK----VR-LRPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.+++.|..+|...|++++|..++++..+. +| -.|+ ..+|+.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44555555555555555555555554321 11 1222 3345556666666666666666665544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.7 Score=44.53 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCHHHHHHHHHHhhcC
Q 037477 513 WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
+...|..+...+...|++++|...++++...+ |+...+ ..++.-.|+.++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455555444444566666666666665533 443322 11223456666666666555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.066 Score=53.77 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=68.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEG---YEM----DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
..+..+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++..+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i------------- 358 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP------------- 358 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------------
Confidence 34556778899999999999987631 222 2567899999999999999999999877531
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
.........+....+++.+...|...|++++|+.++++..
T Consensus 359 -----------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 359 -----------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -----------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1111111111123456777777888888888877777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.14 Score=38.73 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIK-TWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.+.+.|++++|...|++..+.... +.. .|..+..+|...|++++|.+.|++.++.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555554443211 233 4444444555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.059 Score=40.62 Aligned_cols=60 Identities=17% Similarity=0.026 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 562 VEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 562 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
.++|..++++..+..|.+......+...+.+.|++++|++.|+++.......+|...+-.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~ 84 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE 84 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 688899999999888999999999999999999999999999997444333777665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.58 Score=51.46 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=82.3
Q ss_pred HccCChhHHHH-HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 384 TKLGRFDEAEK-MMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 384 ~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
...+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+. .. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHH
Confidence 45677777766 44221 1122236666777777777777765421 11 112334567777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+ |..+...|...|+.+...++-+....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 7765332 3567777888888888888888888776632 33444445556666655554444443
Q ss_pred CCCCCChHhHHHHHhhcCCHHHHHHHHHH
Q 037477 543 QNYPPFPEPFVQYISKFGTVEDASEFLKA 571 (639)
Q Consensus 543 ~~~~p~~~~~~~ll~~~g~~~~a~~~~~~ 571 (639)
.| +...-..++.+.|++++|.+++.+
T Consensus 736 ~~---~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TG---KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TT---CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cC---chHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 111112223344555555554433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=1.3 Score=37.49 Aligned_cols=103 Identities=8% Similarity=0.115 Sum_probs=69.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 274 RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
......|+++.|.++.+++. +...|..|.......|+++-|.+.|....+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------------------ 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS------------------------ 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------------------
Confidence 34567899999998887762 788899999999999999999999988753
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDE 433 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (639)
+..+.-.|.-.|+.++..++-+.....| -++.....+...|+++++.++|.+
T Consensus 63 ----------------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 63 ----------------------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp ----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333344455566655555544444443 145555556667777777776644
Q ss_pred H
Q 037477 434 M 434 (639)
Q Consensus 434 m 434 (639)
.
T Consensus 115 ~ 115 (177)
T 3mkq_B 115 G 115 (177)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.94 Score=38.37 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=52.1
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRAL 463 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 463 (639)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.++..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4456666666665544 2455566666666666666666666655443 233334444555555544
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 464 LCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
.+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444443331 33334444555666666665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=1.4 Score=35.12 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=90.6
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ..+|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 357788888888777653 24455666666665566666666666555432 222 23444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
.+-.+ | -+...+...++.+..+|+-+.-.+++.++.. +..|+....-.+..+|.+.|+..+|.+++.+..+.|
T Consensus 83 C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 44322 1 2344556677788888888888888888543 346677788888888999999999999988888887
Q ss_pred CC
Q 037477 545 YP 546 (639)
Q Consensus 545 ~~ 546 (639)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.31 Score=36.71 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 449 LIQGHCAANEVDRALLCFAKMMEKNYDADAD-LLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 449 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
....+...|++++|...+++.++.. +.+.. .+..+..+|...|++++|...|+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456778899999999999988864 33556 7888888888999999999999988876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.81 Score=34.22 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=7.9
Q ss_pred HHHHcCCChhHHHHHHHHHH
Q 037477 486 NGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~ 505 (639)
..+.+.|++++|...|+.+.
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333444444444444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=1.9 Score=34.39 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037477 264 HNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK 333 (639)
Q Consensus 264 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (639)
.+....+..++.+...|.-|+-.+++.++.. +.+|++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3566778888999999999999999999644 33788999999999999999999999999999888763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.43 Score=39.36 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAAN---EVDRALLCFAKMMEKNYDA--DADLLDVLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~ 500 (639)
.+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..++++..+.+ .| +...+-.|--+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444333 35555555555555555 4445555555555543 12 223333344455566666666666
Q ss_pred HHHHHHh
Q 037477 501 LVEMIEK 507 (639)
Q Consensus 501 ~~~m~~~ 507 (639)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.84 Score=37.61 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 037477 390 DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG---RFEDACNVLDEMEENGCIP--DIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 390 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
..+.+.|.+..+.| .++..+...+..++++.+ ++++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34555566555555 367777777777777777 5667888888777654 23 23344455566788888888888
Q ss_pred HHHHHHHc
Q 037477 465 CFAKMMEK 472 (639)
Q Consensus 465 ~~~~m~~~ 472 (639)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.77 Score=35.15 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKN------YDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
.-+-.|...+.+.|+++.|...++...+.- -.+....+..|..+|.+.|+++.|..++++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444555555555555555555544420 012234444444444555555555555544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.71 E-value=14 Score=40.50 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 269 YNGILRVLARHESVRDFWNVVEEMKK 294 (639)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (639)
|..++.++.+.++.+.+.++|..+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666677777777777777777764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.29 E-value=2.3 Score=45.44 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=49.0
Q ss_pred HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 556 ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 556 l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
+...|+++.|.++-++.....|.+..+|..|..+|...|+|+.|+-.+..||-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 34679999999999999998999999999999999999999999999999973
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=2 Score=39.61 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHH
Q 037477 444 KTWTILIQGHCAA-----NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ-KRVNGAYKLLVEMIE 506 (639)
Q Consensus 444 ~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 506 (639)
..|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+++.+.+++...
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3445555555552 55555555555555543211234444444444442 555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.65 E-value=2.3 Score=32.32 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENG------CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
+..+...+...|+++.|...|+...+.- -.+....+..+..+|.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444455555555555555555543310 1123445555666666666666666666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.39 E-value=2.1 Score=34.95 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHccCCh------hHHHHHHHHHHHCCCCCCHH-hHHHHHH------HHHhcCCHHHHHHHHHHHHHCCCC
Q 037477 374 SVYDGIHRALTKLGRF------DEAEKMMKAMKNAGFEPDNI-TYSQVIF------GLCKAGRFEDACNVLDEMEENGCI 440 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~ 440 (639)
.+|-..+...-+.|+. ++..++|++.... ++|+.. .|..-+. .+...+++++|.++|+.+.+..-.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence 3444444444445555 5666677766553 344421 1111111 112347888899999888765323
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 441 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
- ...|....+--.+.|++..|.+++.+.+..+.+| ...+...|.
T Consensus 93 F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 93 F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 2 6677777777778899999999999888877665 334444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.39 E-value=6.1e-06 Score=80.59 Aligned_cols=328 Identities=12% Similarity=0.115 Sum_probs=202.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHH
Q 037477 128 SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLV 207 (639)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (639)
.+..|..|-.+..+.+++.+|++.|-+ . -|+..|..++.++.+.|.+++....+++ .+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~M----aR------------ 110 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQM----AR------------ 110 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHT----TS------------
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHH----HH------------
Confidence 456799999999999999998877622 2 2667788899999999988887543221 11
Q ss_pred HHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 208 DVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWN 287 (639)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 287 (639)
+. ..+...=+.|+-+|++.+++.+..+
T Consensus 111 ---------------------------------------------------k~--~ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 111 ---------------------------------------------------KK--ARESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp ---------------------------------------------------TT--CCSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred ---------------------------------------------------HH--hcccccHHHHHHHHHhhCcHHHHHH
Confidence 11 1122333578888998888766544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 037477 288 VVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESL 367 (639)
Q Consensus 288 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 367 (639)
++. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 138 fl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-------------------------------------- 172 (624)
T 3lvg_A 138 FIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------------------------------------- 172 (624)
T ss_dssp TTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC--------------------------------------
T ss_pred HHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc--------------------------------------
Confidence 332 35666667788888888888888877766643
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 368 GNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
|..|...+.+.|++..|.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.-. | .-..
T Consensus 173 --------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~ 233 (624)
T 3lvg_A 173 --------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELE 233 (624)
T ss_dssp --------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCS
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHH
Confidence 22244455666777766654322 236678888888888888887665443333321 1 1223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
.++..|...|.+++-+.+++.-.... +.....|+-|.-.|++- +.++.++.++....+-++ ..+|++|.+.
T Consensus 234 elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi-------pKviracE~a 304 (624)
T 3lvg_A 234 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI-------PKVLRAAEQA 304 (624)
T ss_dssp GGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC-------TTTHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH-------HHHHHHHHHH
Confidence 46677888888888888887776432 56778888888788875 445554444433222111 2356666666
Q ss_pred CCHHHHHHHHHHHHh----------C-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037477 528 RRLEEAMNLLRLMKK----------Q-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 528 g~~~~A~~~~~~m~~----------~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (639)
..|.++.-++..-.+ + ...-+...|..++.+-++.|--.+.+.-..+. .+...+-|+.++...=+.
T Consensus 305 hLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e---~P~lL~DLL~vL~prlDh 381 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLLLNDLLMVLSPRLDH 381 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS---CCTTSHHHHHHHCTTCCS
T ss_pred hhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh---ChHHHHHHHHhccccCCh
Confidence 666666655553221 1 01123345555666667776655555555544 333355566666666666
Q ss_pred HHHHHHHhhC
Q 037477 597 YEAKDLLYKC 606 (639)
Q Consensus 597 ~~A~~~~~~m 606 (639)
..+.++|++.
T Consensus 382 ~RvV~~~~k~ 391 (624)
T 3lvg_A 382 TRAVNYFSKV 391 (624)
T ss_dssp TTTHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 6677777663
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=1.7 Score=40.09 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 037477 389 FDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCK-----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA-NEV 459 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~ 459 (639)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666665 454 5578888888888 489999999999988865322467777788888874 889
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH
Q 037477 460 DRALLCFAKMMEKNYD--ADADLLDVL 484 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~--~~~~~~~~l 484 (639)
+.+.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999998887666 665544443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.16 E-value=2 Score=35.73 Aligned_cols=141 Identities=10% Similarity=0.059 Sum_probs=75.8
Q ss_pred cCCCCCHHHHHH--HHHHHHcCCChhHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 472 KNYDADADLLDV--LINGFLSQKRVNGAYKLLVEMIEKVRLRPW-------QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 472 ~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.|+.|....|+. =+..+...|.++.|.-+.+-+....+..|+ ..++..+.+++...|++.+|...|+....
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456665544433 356777888888888877765543233444 23556667788888999999988888653
Q ss_pred C-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 543 Q-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 543 ~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
. ..-+...+....+.-...... . ...+.+.+.-..+..+|.+.|++++|+.+++.+|.+-+ .|.+..+++
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~------s--~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~La 162 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQ------S--QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLA 162 (167)
T ss_dssp HHHCC----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHH
T ss_pred HHHHHhcCCCccccccccCCCcc------c--ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHH
Confidence 1 111111100000000000000 0 01233556666789999999999999999999986543 445555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.72 E-value=2.2 Score=33.73 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR---ALLCFAKMMEKNYDA--DADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
..+.+-|.+....|. ++..+--.+..++.+..+... ++.+++...+.+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444333332 344444444445555444433 555555554432 11 12222233345555555555555
Q ss_pred HHHHHHHh
Q 037477 500 LLVEMIEK 507 (639)
Q Consensus 500 ~~~~m~~~ 507 (639)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.71 E-value=7.3 Score=44.53 Aligned_cols=145 Identities=9% Similarity=0.019 Sum_probs=92.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI----------------- 440 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------- 440 (639)
.++..+...|..+.+.++.... +.+...--.+..+|..+|++++|...|.+... |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 4555666677777666654332 33444434455677889999999999976421 110
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC
Q 037477 441 ------PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA----DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL 510 (639)
Q Consensus 441 ------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 510 (639)
.-..-|..++..+.+.|.++.+.++-...++..-.-+. ..|..+.+++...|++++|...+-.+... ..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH
Confidence 01233667777888888888888877776664322222 25777888888888888888888877664 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHH
Q 037477 511 RPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~ 531 (639)
-......+|..++..|..+
T Consensus 970 --r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHH
T ss_pred --HHHHHHHHHHHHHhCCChh
Confidence 2446666766666655543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=8.1 Score=37.87 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH----hCCCCCCHH
Q 037477 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE----KVRLRPWQA 515 (639)
Q Consensus 447 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~ 515 (639)
..++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ ..|+.|...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345555666666666666666665543 44666666666666666666666666665433 236666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.13 E-value=26 Score=34.97 Aligned_cols=164 Identities=9% Similarity=0.053 Sum_probs=102.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCC-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-D----NITYSQVIFGLCKAGRFEDACNVLDEMEE----NGCIPD--IK 444 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~ 444 (639)
...+...|-..|++.+|.+++..+...-... + ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3457788999999999999999986431111 1 24566778899999999999999988742 222222 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHH-----HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEK-NYDADADLL-----DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFK 518 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 518 (639)
.+...+..+...+++.+|.+.|.+..+. ....|...+ ..++.. .-.+..+.-..+....... ...++...|.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~-iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~ 297 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL-VLSPYGNLQNDLIHKIQND-NNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHSSCSSTTHHHHHSHHHH-SSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHhhc-ccccccHHHH
Confidence 5677788888899999998888877652 111233222 222222 2222223333334443333 2345677889
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHH
Q 037477 519 TLIEKLLGA--RRLEEAMNLLRLMK 541 (639)
Q Consensus 519 ~li~~~~~~--g~~~~A~~~~~~m~ 541 (639)
.++.+|... .+++.+.+.|....
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHhchHhhhHHHHHHHHHHh
Confidence 999988763 45666666665443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.41 E-value=2.6 Score=45.00 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
-...+...|+++.|+++-++....- +-+-.+|-.|..+|.+.|+++.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455667899999999999988763 4457899999999999999999999998873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=86.35 E-value=5.1 Score=31.62 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNG---AYKLLVEMIEKVRLRP--WQATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 532 (639)
....+.+-|.+....|. ++..+-..+..++.+.....+ ++.+++++.+. + .| .....-.+.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555555553 566665566666676665554 77777766553 1 13 12233334456777777777
Q ss_pred HHHHHHHHHhCCCCCC
Q 037477 533 AMNLLRLMKKQNYPPF 548 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~ 548 (639)
|.+.++.+.+ +.|+
T Consensus 93 A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHH--hCCC
Confidence 7777777776 4454
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.35 E-value=6.2 Score=29.50 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
+.-+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 444556666666667777777777777777777777777777777777664333 234555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.09 E-value=13 Score=30.40 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
+++++|.++|+.+.+.+-.- ...|.....--.+.|++.+|.+++......+.+| .....+.|+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 89999999999997663333 6667766677778999999999999999888764 344444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.16 E-value=3.3 Score=40.69 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE-----NGCIPDIKT 445 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t 445 (639)
.++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666667776666666665443 34555666667777777777777666666532 366665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.98 E-value=9.3 Score=28.58 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVI 415 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 415 (639)
|.-.+.+.+..+......|++.+..+.+++|-+.+++..|.++|+-.+..- .+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444555566666666677777777777777777777777777777766442 22233455444
|
| >2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.27 E-value=7.1 Score=26.72 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 037477 81 ELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCD 121 (639)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~ 121 (639)
.....|+.+.+.++...+..+|....|+.+.|+..+-.|..
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 45566888999999999999999999999999999988876
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.63 E-value=32 Score=32.21 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH----HHHHHHHhCCCCCCHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK----LLVEMIEKVRLRPWQATFKTL 520 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~~~~p~~~~~~~l 520 (639)
.|.++..=|.+.+++++|.+++..-- ..+.+.|....|-+ +.+...+ .++.++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~-~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDL-AEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHH
Confidence 45566667777888888887764422 12344455544444 3333333 4788888777777
Q ss_pred HHHHHhcCCHH-HHHHHHHHHH----hCCCCC-Ch----HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 037477 521 IEKLLGARRLE-EAMNLLRLMK----KQNYPP-FP----EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESF 590 (639)
Q Consensus 521 i~~~~~~g~~~-~A~~~~~~m~----~~~~~p-~~----~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (639)
+..+.....-+ .=.++++++. +.|-.+ -. ..+...+.+.|++.+|+..|-.- ...++..+..++.-.
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHH
Confidence 77665532111 1123333333 222211 11 12333345667777777665311 111355555555555
Q ss_pred Hhc---CCHHHHHHHHhh
Q 037477 591 FNE---GRHYEAKDLLYK 605 (639)
Q Consensus 591 ~~~---g~~~~A~~~~~~ 605 (639)
... |...++--++-+
T Consensus 176 ~~~~~~~~~~e~dlf~~R 193 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFSR 193 (312)
T ss_dssp HHHTTCCCHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHH
Confidence 554 666665444333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.30 E-value=42 Score=33.40 Aligned_cols=233 Identities=9% Similarity=0.050 Sum_probs=112.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHH----HhcCCHHHHHH--HHHHHHH--CC-CCC
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNA-GFEPDNITYSQVIFGL----CKAGRFEDACN--VLDEMEE--NG-CIP 441 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~----~~~g~~~~A~~--~~~~m~~--~~-~~p 441 (639)
+..+...++..|...|+++...+.+..+.+. |..+. ....++..+ ......+.... +.+.... .| +-.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kifl 132 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFV 132 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHH
Confidence 4556677777777778877777766665543 22222 222333322 22232222111 1111100 11 111
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHHh-CCC--
Q 037477 442 ---DIKTWTILIQGHCAANEVDRALLCFAKMMEK--NYDAD---ADLLDVLINGFLSQKRVNGAYKLLVEMIEK-VRL-- 510 (639)
Q Consensus 442 ---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-- 510 (639)
.......|...|...|++.+|.+++..+... |.... ...+...+..|...+++..|..++..+... ...
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 1122345666777777777777777776542 22111 234555566777777777777777765421 111
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHH-----h--hcCCHHHHHHHHHHhhcC-CCCC
Q 037477 511 RPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYI-----S--KFGTVEDASEFLKALSVK-EYPS 579 (639)
Q Consensus 511 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll-----~--~~g~~~~a~~~~~~~~~~-~~~~ 579 (639)
.|+ ...|..++..+...+++.+|...|.+..+. ....+...+..++ + -.+....-..++...... .-+.
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~ 292 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKK 292 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccc
Confidence 122 345566666777777777777766665431 1111111111111 0 011111111222222211 1123
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHhhC
Q 037477 580 SAAYLQVFESFFNE--GRHYEAKDLLYKC 606 (639)
Q Consensus 580 ~~~~~~l~~~~~~~--g~~~~A~~~~~~m 606 (639)
...|..++.+|... .+|+.+.+.+...
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 45677777777764 3577777766653
|
| >1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 | Back alignment and structure |
|---|
Probab=82.05 E-value=3.7 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=39.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCC
Q 037477 81 ELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPS 128 (639)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~ 128 (639)
+-...|..+.+.++...+..+|....|+.+.|...+-.|.. .++.|+
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~-~~~~~~ 57 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE-EPSGPS 57 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC-CCCSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC-CCCCCC
Confidence 44456788899999999999999999999999999999887 555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.34 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.83 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.71 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.56 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.24 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.18 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.94 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.92 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.71 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.47 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.38 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.21 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.84 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.84 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.75 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.48 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.46 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.17 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.66 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.32 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.24 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.82 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.8 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.5e-16 Score=155.74 Aligned_cols=216 Identities=13% Similarity=0.015 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+...|++++|...++...+.. +-+...|..+...+...|++++|...+++....+.. +...+..+...
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 246 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHH
Confidence 3455666677777888888888888776653 335567777778888888888888888887765433 56677777778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 532 (639)
+.+.|++++|...|++.++.. +-+..++..+...+...|++++|...++..... ...+...+..+...+.+.|++++
T Consensus 247 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHH
Confidence 888888888888888877754 335667777777888888888888888877664 23456677777777888888888
Q ss_pred HHHHHHHHHhCCCCCChHh----HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 037477 533 AMNLLRLMKKQNYPPFPEP----FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGR 595 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (639)
|++.+++..+ +.|+... +..++...|++++|...|++..+..|.++..|..+..+|.+.||
T Consensus 324 A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 324 AVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8888887765 3454332 23334577888888888888887777788888888888877664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.7e-16 Score=156.65 Aligned_cols=351 Identities=12% Similarity=0.031 Sum_probs=273.3
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.|++++|++.|+.+.+.. +-+...+..+...|.+.|++++|...|++..+.. +-+..+|..+...|.+.|++++|+.
T Consensus 12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccc
Confidence 488999999999986542 3367889999999999999999999999998874 4468899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
.+....+...... ............... ............. ...................+....+...+......
T Consensus 89 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 89 HYRHALRLKPDFI-DGYINLAAALVAAGD--MEGAVQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHCTTCH-HHHHHHHHHHHHHSC--SSHHHHHHHHHHH-HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-ccccccccccccccc--ccccccccccccc-cccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 9999887533222 222222222222221 1122222222222 22233344555666777888888888888887766
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
. +.+...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|...+++....+ ..+...+.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 4 445677888889999999999999999998876533 67789999999999999999999999999875 45677888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-h---HHHHHhh
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-P---FVQYISK 558 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~ 558 (639)
.+...+.+.|++++|...|++..+.. +-+...|..+...+...|++++|++.++...... |+.. . +..++..
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHH
Confidence 88999999999999999999988752 2246788899999999999999999999887632 3322 2 2334468
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 559 FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
.|++++|+..|++..+..|.+..+|..+..+|.+.|++++|.+.+++..
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999863
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.2e-11 Score=119.21 Aligned_cols=224 Identities=10% Similarity=-0.059 Sum_probs=179.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
....+.+.|++++|.+.|+...+.. +-+..+|..+..+|...|++++|...|.+..+.... +...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 4556789999999999999999874 446788999999999999999999999999876533 67888999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDA--------------DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKL 524 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 524 (639)
+++|.+.+++........ +.......+..+...+.+.+|...|....+...-.++...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999988742110 001111222334455677889999988877645556677888888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChH-h---HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFPE-P---FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK 600 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 600 (639)
...|++++|+..+++.... .|+.. . +..++...|++++|.+.|++..+..|.++.+|..+..+|.+.|++++|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998873 34433 2 2334568899999999999999888889999999999999999999999
Q ss_pred HHHhhC
Q 037477 601 DLLYKC 606 (639)
Q Consensus 601 ~~~~~m 606 (639)
+.|++.
T Consensus 261 ~~~~~a 266 (323)
T d1fcha_ 261 EHFLEA 266 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999884
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.5e-10 Score=111.50 Aligned_cols=236 Identities=10% Similarity=0.025 Sum_probs=168.9
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.|+.++|+..|+.+.+.. +-+..+|..+..+|...|++++|...|++..+.. +-+...|..+...|...|++++|.+
T Consensus 32 ~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~ 108 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACE 108 (323)
T ss_dssp TTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccccccc
Confidence 689999999999986542 3368899999999999999999999999988764 4468889999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
.++..... .|+............ ...+.......+..+...+.+.+|.+.|....+.
T Consensus 109 ~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 109 ILRDWLRY--TPAYAHLVTPAEEGA---------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHT--STTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHh--ccchHHHHHhhhhhh---------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99988764 232211000000000 0000000111222334445667777777776654
Q ss_pred C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 403 G-FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 403 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
. -..+...+..+...+...|++++|...|++....... +...|..+...|...|++++|.+.+++.++.. +-+...+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHH
Confidence 2 1335667777888888889999999998888765433 57788888888888999999999988888764 3356778
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
..+..+|.+.|++++|+..|++..+
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888999999888887765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.2e-07 Score=89.84 Aligned_cols=217 Identities=8% Similarity=0.108 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR-MMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
...|+.+-..+.+.+..++|+++++++.+.. +-+...|+....++...| ++++|+..++...+. .|
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p---------- 109 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QP---------- 109 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CT----------
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HH----------
Confidence 4567777778888999999999999999874 446778888888888876 589999999887653 11
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
-+..+|..+...+.+.|++++|++.++.+.+.. +.+...|..+...+.+.|++
T Consensus 110 --------------------------~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~ 162 (315)
T d2h6fa1 110 --------------------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLW 162 (315)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred --------------------------hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhh
Confidence 233456667778888899999999999998875 45688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANE------VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
++|+..++++.+.... +...|+.+...+.+.+. +++|.+.+.+.++.. +-+...|+-+...+.. ...+++.
T Consensus 163 ~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~ 239 (315)
T d2h6fa1 163 DNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYP 239 (315)
T ss_dssp TTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCH
T ss_pred HHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHH
Confidence 9999999999987644 67788877766666554 678888888888875 4467777766555544 4467778
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037477 499 KLLVEMIEKVRLRPWQATFKTLIEKLL 525 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~~~li~~~~ 525 (639)
..++...+......+...+..+...|.
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 240 NLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 888777665222234445555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=2e-07 Score=88.21 Aligned_cols=167 Identities=8% Similarity=0.039 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG- 452 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~- 452 (639)
..|...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|++++|.++|+++.+.+.. +...|......
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e 178 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3444555556666777777777776665432222345666666666667777777777766655432 22333222222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRL 530 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~ 530 (639)
+...|+.+.|..+|+.+++.. +.+...|...++.+.+.|+++.|..+|++..+..+..|. ...|...+..-...|+.
T Consensus 179 ~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 233466666666766666652 334566666666666667777777777666655334443 34566666555566666
Q ss_pred HHHHHHHHHHHh
Q 037477 531 EEAMNLLRLMKK 542 (639)
Q Consensus 531 ~~A~~~~~~m~~ 542 (639)
+.+.++++++.+
T Consensus 258 ~~~~~~~~r~~~ 269 (308)
T d2onda1 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.5e-07 Score=89.17 Aligned_cols=224 Identities=12% Similarity=0.057 Sum_probs=171.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
..++.+-..+.+.+..++|+++++.+.+.. +-+...|+....++...| ++++|+..++...+.... +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 356667777888999999999999999875 446678888888888876 599999999999887644 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC--
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARR-- 529 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~-- 529 (639)
+.+.|++++|++.++++++.. +-+...|..+...+.+.|++++|+..|+.+.+. .| +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccc
Confidence 999999999999999999975 447899999999999999999999999999886 33 45677766555555554
Q ss_pred ----HHHHHHHHHHHHhCCCCCChH-hH--HHHHhhcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhc--C----
Q 037477 530 ----LEEAMNLLRLMKKQNYPPFPE-PF--VQYISKFGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNE--G---- 594 (639)
Q Consensus 530 ----~~~A~~~~~~m~~~~~~p~~~-~~--~~ll~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~--g---- 594 (639)
+++|++.+.+..+. .|+.. .+ ...+......+++...++...+. ...+...+..++..|... +
T Consensus 198 ~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 67899999888773 35433 22 23333444567888888877655 445677777888887543 2
Q ss_pred ---CHHHHHHHHhh
Q 037477 595 ---RHYEAKDLLYK 605 (639)
Q Consensus 595 ---~~~~A~~~~~~ 605 (639)
.+++|.+++..
T Consensus 276 ~~~~~~ka~~l~~~ 289 (315)
T d2h6fa1 276 KEDILNKALELCEI 289 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 24455555554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=7.2e-07 Score=85.85 Aligned_cols=236 Identities=11% Similarity=-0.045 Sum_probs=109.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMD----IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
....+...|++++|.+++++..+..-..+ ...+..+...|...|++++|+..|++..+.. .
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~---------------~ 82 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA---------------R 82 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 34445667777777777777665421111 2345556666677777777777766654310 0
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCC---HHhHHHHHHHHH
Q 037477 348 SINNPDLGLVFRVANKYESLGNSL-SKSVYDGIHRALTKLGRFDEAEKMMKAMKNA----GFEPD---NITYSQVIFGLC 419 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~---~~~~~~li~~~~ 419 (639)
..+..+ ....+..+...+...|++..+...+...... +.... ...+..+...+.
T Consensus 83 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 144 (366)
T d1hz4a_ 83 ------------------QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 144 (366)
T ss_dssp ------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH
Confidence 000000 1123444555566666666666666554321 11111 122333444555
Q ss_pred hcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHH
Q 037477 420 KAGRFEDACNVLDEMEENG----CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK--NYDAD----ADLLDVLINGFL 489 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~----~~~~~~li~~~~ 489 (639)
..|+++.+...+....... ......++..+...+...++...+...+.+.... ..... ...+..+...+.
T Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T d1hz4a_ 145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 224 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 5666666666555554321 1112334444444555555555555555544431 11111 112233334445
Q ss_pred cCCChhHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 490 SQKRVNGAYKLLVEMIEKVRLRP--WQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
..|++++|...+....+.....+ ....+..+...+...|++++|.+.++..
T Consensus 225 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 277 (366)
T d1hz4a_ 225 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 277 (366)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555554332211100 1223334444555555555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=4.8e-07 Score=82.95 Aligned_cols=194 Identities=11% Similarity=-0.117 Sum_probs=118.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
.+|..+...|.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|...|++.++.. +-+..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 35556667778888888888888887775433 56778888888888888888888888888764 23456677777778
Q ss_pred HcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhc----CCHHH
Q 037477 489 LSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKF----GTVED 564 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----g~~~~ 564 (639)
...|++++|...|+...+.. ..+......+..++.+.+..+.+..+..........+........+... +..+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888877652 1233333333344455555555555555555432222211122222111 11222
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 565 ASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 565 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+...+.......+....+|..+...|...|++++|.+.|++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222221111112334556777888888899999999988884
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.4e-06 Score=83.73 Aligned_cols=272 Identities=13% Similarity=0.000 Sum_probs=187.6
Q ss_pred HhccChHHHHHHHHHHhccCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHH
Q 037477 241 ELRIYPVKALGFFRWVGEHSGYKHN---TITYNGILRVLARHESVRDFWNVVEEMKKEG----YE-MDIDTYIKISRQFQ 312 (639)
Q Consensus 241 ~~~~~~~~A~~~f~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~ 312 (639)
...|++++|+++|+...+...-.++ ..+++.+...|...|++++|.+.|++..+.. .. .....+..+...+.
T Consensus 23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3468999999999988643211111 3567788899999999999999999876531 11 12345667778888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 037477 313 KFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEA 392 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 392 (639)
..|++..+...+...... ...... .........+..+...+...|+++.+
T Consensus 103 ~~~~~~~a~~~~~~al~~---------------~~~~~~---------------~~~~~~~~~~~~la~~~~~~~~~~~a 152 (366)
T d1hz4a_ 103 AQGFLQTAWETQEKAFQL---------------INEQHL---------------EQLPMHEFLVRIRAQLLWAWARLDEA 152 (366)
T ss_dssp HTTCHHHHHHHHHHHHHH---------------HHHTTC---------------TTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------hHhccc---------------chhhHHHHHHHHHHHHHHHhcchhhh
Confidence 999999999988876431 000000 00000112344566778889999999
Q ss_pred HHHHHHHHHCCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHHcCCHHHH
Q 037477 393 EKMMKAMKNAGF----EPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN--GCIPD----IKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 393 ~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~t~~~li~~~~~~g~~~~a 462 (639)
...+........ ......+......+...++..++...+.+.... ..... ...+..+...+...|+.+.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 153 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH
Confidence 999988876422 223445566677788899999999888776542 11111 23456667778899999999
Q ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 037477 463 LLCFAKMMEKNYDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRPW-QATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 463 ~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 535 (639)
...+.+..+..... ....+..+...+...|++++|...++..... .+..|+ ...+..+...|.+.|++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 233 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99998876643222 2445666788899999999999999987642 233333 4467778889999999999999
Q ss_pred HHHHHHh
Q 037477 536 LLRLMKK 542 (639)
Q Consensus 536 ~~~~m~~ 542 (639)
.+++..+
T Consensus 313 ~l~~Al~ 319 (366)
T d1hz4a_ 313 VLLDALK 319 (366)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=2.8e-07 Score=87.16 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=138.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCF 466 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 466 (639)
+..++|..+|++..+...+.+...|...+..+.+.|++++|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765556677788888889999999999999999987654434567899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 037477 467 AKMMEKNYDADADLLDVLIN-GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN- 544 (639)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 544 (639)
+++++.+.. +...|..... -+...|+.+.|..+|+.+.+.++ .+...|...++.+.+.|+.++|..+|++..+..
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p--~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999887533 3344433333 34456889999999999987633 346688888998899999999999999987643
Q ss_pred CCCCh--HhHH---HHHhhcCCHHHHHHHHHHhhcC
Q 037477 545 YPPFP--EPFV---QYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 545 ~~p~~--~~~~---~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
..|.. ..|. .+-..+|+.+.+..+.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34431 1233 3335778888888888877655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=1.1e-07 Score=87.33 Aligned_cols=203 Identities=11% Similarity=-0.004 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
.+|..+..+|.+.|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+.... +..++..+...|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence 356667889999999999999999998875 456889999999999999999999999999986543 567888899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR---- 529 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---- 529 (639)
...|++++|...|++.++.. +.+......+..++.+.+..+.+..+....... ...+. .++ ++..+.....
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQW--GWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCST--HHH-HHHHHTTSSCHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-chhhh--hhh-HHHHHHHHHHHHHH
Confidence 99999999999999999875 334554444445556666655555555555443 22222 222 2222222222
Q ss_pred HHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 037477 530 LEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQ 585 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 585 (639)
.+.+...+..... ..|+.. .+...+...|++++|...|++.....|.+...|..
T Consensus 191 ~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 248 (259)
T d1xnfa_ 191 MERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248 (259)
T ss_dssp HHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred HHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 2222222111111 112111 12344567899999999999999887777655543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=2.7e-07 Score=88.45 Aligned_cols=213 Identities=7% Similarity=-0.068 Sum_probs=129.4
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR--FEDACNVLDEMEENGCIPDIKTWT-ILIQGHCAANEVDR 461 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~t~~-~li~~~~~~g~~~~ 461 (639)
..|++++|+..++...+.. +.+...|..+..++...++ +++|...+.++.+.... +...+. .....+...|..+.
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 3455666777777766553 3455566666666665543 67777777777665322 444443 33355566777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
|+..++.+++.+ +-+...|+.+...+.+.|++++|...+....+. .|. .......+...+..+++...+....
T Consensus 163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 887777777765 336677777777777777777665555443332 111 1122233444555566666666665
Q ss_pred hCCCC-CC-hHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 542 KQNYP-PF-PEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 542 ~~~~~-p~-~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
..... +. .......+...|+.++|...+.+.....|.+...|..+..+|...|++++|.+.+++.
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a 302 (334)
T d1dcea1 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 302 (334)
T ss_dssp HSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred HhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 53211 11 1122334445577777777777777777777777777888888888888888887775
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.44 E-value=7.7e-07 Score=85.13 Aligned_cols=272 Identities=7% Similarity=-0.014 Sum_probs=162.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHH---HHH-------HhcCCHHHHHHHHHHhhcCCCCCCHHH
Q 037477 270 NGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKIS---RQF-------QKFRMMEDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li---~~~-------~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (639)
..++....+.+..++|+++++...+. .|+ ...|+..- ..+ ...|.+++|+.+++...+. .|
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~p---- 104 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NP---- 104 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CT----
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CC----
Confidence 33444444444457888888888765 344 33444322 222 2233456666666655432 11
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHhHHH-HH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG--RFDEAEKMMKAMKNAGFEPDNITYSQ-VI 415 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~-li 415 (639)
.+...|..+..++...+ ++++|...+..+.+.. +++...+.. ..
T Consensus 105 --------------------------------k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~ 151 (334)
T d1dcea1 105 --------------------------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRF 151 (334)
T ss_dssp --------------------------------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred --------------------------------CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHH
Confidence 12233444444444443 4678888888877653 334555443 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN 495 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (639)
..+...|.+++|+..++...+.... +...|+.+...+.+.|++++|...+....+.. |+ ...+...+...+..+
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~ 225 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPND 225 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSC
T ss_pred HHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchh
Confidence 5666678888888888888776644 67788888888888888777665554433321 11 112233345556667
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH----HHHHhhcCCHHHHHHHHHH
Q 037477 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF----VQYISKFGTVEDASEFLKA 571 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~g~~~~a~~~~~~ 571 (639)
++...+........ ++...+..+...+...|+.++|.+.+.+..+. .|+.... ...+...|+.++|.+++++
T Consensus 226 ~a~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 226 QSAWFYHRWLLGRA--EPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp SHHHHHHHHHHSCC--CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777665422 22334555666677778888888888777642 2332221 2233577888888888888
Q ss_pred hhcCCCCCHHHHHHHHHHHHh
Q 037477 572 LSVKEYPSSAAYLQVFESFFN 592 (639)
Q Consensus 572 ~~~~~~~~~~~~~~l~~~~~~ 592 (639)
..+..|.+...|..|...+.-
T Consensus 302 ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 302 LKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHCcccHHHHHHHHHHHhH
Confidence 888877777888877766653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=2.3e-05 Score=72.73 Aligned_cols=204 Identities=8% Similarity=-0.099 Sum_probs=135.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK----NY-DADADLLDV 483 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~ 483 (639)
....|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.+++..+. |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 456678888999999988887642 1111 2357888888999999999999998877652 11 111344555
Q ss_pred HHHHHH-cCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-------h
Q 037477 484 LINGFL-SQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-------P 551 (639)
Q Consensus 484 li~~~~-~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~ 551 (639)
+...|. ..|++++|...+++..+......+ ..+|..+...+...|++++|.+.+++........... .
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 469999999999877543111111 3467788899999999999999999987743221111 1
Q ss_pred HHHHH--hhcCCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHh--cCCHHHHHHHHhhCCccccCChhHHHhh
Q 037477 552 FVQYI--SKFGTVEDASEFLKALSVKEYPS-----SAAYLQVFESFFN--EGRHYEAKDLLYKCPHHIRQDSKISLLF 620 (639)
Q Consensus 552 ~~~ll--~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 620 (639)
+...+ ...|+.+.|...+++..+..|.. ......++.++.. .+.+++|+..|+++.. .++|...++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~---lD~~~~~~L 277 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR---LDKWKITIL 277 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC---CCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cCHHHHHHH
Confidence 12222 35699999999999998874432 2344567777765 3568999999987643 345555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.4e-05 Score=66.35 Aligned_cols=121 Identities=11% Similarity=0.047 Sum_probs=56.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
...|++++|++.|.++. .|+..+|..+...|...|++++|.+.|++.++.+ +-+...|..+-.+|.+.|++++|.
T Consensus 16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 34444444444444321 2344444444444444444444444444444433 223444444444444445555554
Q ss_pred HHHHHHHHhC-----------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 499 KLLVEMIEKV-----------RL--RPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 499 ~~~~~m~~~~-----------~~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
..|+...... +. .++ ..++..+..++.+.|++++|.+.+....+..
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4444443210 00 000 2344445556667777777777777666533
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.4e-05 Score=64.16 Aligned_cols=91 Identities=10% Similarity=-0.046 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
...|.+.|++++|...|++..+.... +...|..+..+|...|++++|...|++.++.. +-+...|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 44566777777777777777765533 56677777777777777777777777777664 33556677777777777777
Q ss_pred hHHHHHHHHHHHh
Q 037477 495 NGAYKLLVEMIEK 507 (639)
Q Consensus 495 ~~A~~~~~~m~~~ 507 (639)
++|...|++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 7777777777664
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=2.9e-05 Score=71.99 Aligned_cols=201 Identities=11% Similarity=-0.029 Sum_probs=136.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNA----GFEP-DNITYSQVIFGLCKAGRFEDACNVLDEMEEN----GC-IPDIK 444 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~ 444 (639)
.|......|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|...+++..+. |- .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 3666778899999999999999988653 2112 2357888999999999999999999986542 11 01134
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-----
Q 037477 445 TWTILIQGHCA-ANEVDRALLCFAKMMEK----NYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----- 513 (639)
Q Consensus 445 t~~~li~~~~~-~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----- 513 (639)
++..+...|.. .|++++|.+.+++..+. +..+ -..++..+...|...|++++|...|++........+.
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 56666667754 69999999999988652 2111 1345777888999999999999999998775322221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---hHhHHHHHh--h---cCCHHHHHHHHHHhhcC
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PF---PEPFVQYIS--K---FGTVEDASEFLKALSVK 575 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~~~~~ll~--~---~g~~~~a~~~~~~~~~~ 575 (639)
...+..++..+...|+++.|.+.+++..+.... ++ ...+..++. . .+.+++|+..|+++.+.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 123344555677889999999999998764311 11 122333332 1 24578888888766655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.9e-05 Score=65.98 Aligned_cols=123 Identities=7% Similarity=-0.065 Sum_probs=101.7
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV 459 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 459 (639)
...+...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++..+.... +...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 345678899999999998753 678889999999999999999999999999987644 678999999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 460 DRALLCFAKMMEKNY--------------DAD-ADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~--------------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
++|...|++.+.... .++ ..++..+..++.+.|++++|.+.|....+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999876311 111 245566777899999999999999987654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=6.5e-05 Score=58.50 Aligned_cols=89 Identities=10% Similarity=-0.031 Sum_probs=48.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN 495 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (639)
..+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+.+.++.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 3445555555555555555544322 44555555555555566655655555555543 334555555555555555666
Q ss_pred HHHHHHHHHHH
Q 037477 496 GAYKLLVEMIE 506 (639)
Q Consensus 496 ~A~~~~~~m~~ 506 (639)
+|+..|+...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=9.4e-05 Score=57.54 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=83.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
-...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..+.+..+.+.. +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 4566788999999999999998875 557888999999999999999999999999987654 78899999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 037477 459 VDRALLCFAKMMEKN 473 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g 473 (639)
+++|+..|++.++..
T Consensus 87 ~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=0.0001 Score=61.12 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=88.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
.....|.+.|++++|...|.+..+.. +-+...|..+..+|...|++++|...|++..+.... +...|..+..+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 34567889999999999999999886 557888999999999999999999999999987643 6789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
++++|...+++..... +-+...+..+
T Consensus 93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l 118 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK-PHDKDAKMKY 118 (159)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 9999999999999875 2344444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=0.0057 Score=56.49 Aligned_cols=295 Identities=9% Similarity=0.012 Sum_probs=151.8
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
.||..--..+.+.|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++... -+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 34555555666777777888888777765542 456667777777777777776654 244566666
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG 422 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 422 (639)
..+|....... ...+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~-------la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFR-------LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHH-------HHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHH-------HHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 66655433211 1122223333455555667888888888888888888765432 556677788888888764
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
.++..+.+..... .-| ...++..|.+.+.++++.-++.++... + +++...+.+..+..++..+.+
T Consensus 148 -~~kl~e~l~~~s~---~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~----~----~A~~~~i~~~~~~~~~~~f~e 212 (336)
T d1b89a_ 148 -PQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEY----D----NAIITMMNHPTDAWKEGQFKD 212 (336)
T ss_dssp -HHHHHHHHHHHST---TSC---HHHHHHHHHTTTCHHHHHHHHHHTTCH----H----HHHHHHHHSTTTTCCHHHHHH
T ss_pred -hHHHHHHHHhccc---cCC---HHHHHHHHHHcCChHHHHHHHHhcCCH----H----HHHHHHHHcchhhhhHHHHHH
Confidence 3333333332211 112 233455556666665555555444221 0 111112222222222222222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 503 EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 503 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
-..+. . |...|-..+..|... +.+-...++..+. -.-|..-....+.+.+++.....+++...... +..+
T Consensus 213 ~~~k~--~--N~e~~~~~i~~yL~~-~p~~i~~lL~~v~---~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n--~~~v 282 (336)
T d1b89a_ 213 IITKV--A--NVELYYRAIQFYLEF-KPLLLNDLLMVLS---PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN--NKSV 282 (336)
T ss_dssp HHHHC--S--STHHHHHHHHHHHHH-CGGGHHHHHHHHG---GGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--CHHH
T ss_pred HHHcc--C--ChHHHHHHHHHHHHc-CHHHHHHHHHHhc---cCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--hHHH
Confidence 22221 1 222344444444432 1222222222222 12344445556667778888888888876543 5678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh
Q 037477 583 YLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 583 ~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
.+++...|...++++.-.+.++.
T Consensus 283 n~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHHHH
Confidence 99999999999998776665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.92 E-value=8.6e-05 Score=64.26 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=52.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
|+...+......|.+.|++++|+..|.+..+.... +...|..+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 33444444455555556666666666555544322 44555555555666666666666665555432 12344555555
Q ss_pred HHHHcCCChhHHHHHHHHHH
Q 037477 486 NGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~ 505 (639)
.+|.+.|++++|+..|+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55666666666666655544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=8.9e-05 Score=64.17 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=85.5
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 371 LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 371 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
|+...+......|.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 344445556788999999999999999988775 567888999999999999999999999999876432 578899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~ 471 (639)
.+|...|++++|...|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998876
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0085 Score=55.30 Aligned_cols=240 Identities=13% Similarity=0.066 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHH
Q 037477 299 MDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDG 378 (639)
Q Consensus 299 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (639)
||..--..+..-|.+.|.++.|..+|..+.. |..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------------------------------------------~~r 45 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------------------------------------------FGR 45 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC----------------------------------------------HHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------HHH
Confidence 4555555677778888999999888887743 556
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
++..+.+.++++.|.+++... -+..+|..+...+.+.....-| .+.......+......++..|-..|.
T Consensus 46 l~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~ 114 (336)
T d1b89a_ 46 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGY 114 (336)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCC
Confidence 778888889999888887654 2667888888888887766543 22333344566777788999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
+++...+++..... -..+...++-++..|++.+. ++-.+.+... +...+ ...+++.|.+.+.++++.-++.
T Consensus 115 ~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~----s~~y~---~~k~~~~c~~~~l~~elv~Ly~ 185 (336)
T d1b89a_ 115 FEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELF----WSRVN---IPKVLRAAEQAHLWAELVFLYD 185 (336)
T ss_dssp HHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHH----STTSC---HHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhc----cccCC---HHHHHHHHHHcCChHHHHHHHH
Confidence 99999999887654 25677888889988888643 3333333332 11122 1233445555555555555444
Q ss_pred HH----------HhC-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 539 LM----------KKQ-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 539 ~m----------~~~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
++ .++ ....+...|...+.+.++.+...++.....+. ++...+.++......-+..++.+.+++-.
T Consensus 186 ~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p~~i~~lL~~v~~~~d~~r~V~~~~k~~ 262 (336)
T d1b89a_ 186 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLLLNDLLMVLSPRLDHTRAVNYFSKVK 262 (336)
T ss_dssp HTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CHHHHHHHHHHhccCCCHHHHHHHHHhcC
Confidence 43 221 12234566777778888888777777666553 34556777777777778888888887743
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.80 E-value=0.011 Score=52.93 Aligned_cols=62 Identities=6% Similarity=0.018 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcC
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK----FRMMEDAVKLFEFMMDG 330 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~ 330 (639)
...+..|-..+-+.|++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 3345555556666777777777777777766 55555555555554 44666666666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=0.00011 Score=56.48 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=52.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV 459 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 459 (639)
...+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|+..|++..+.... +...|..+...|...|+.
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 344555666666666666665553 224556666666666666666666666666554322 455666666666666666
Q ss_pred HHHHHHHHHH
Q 037477 460 DRALLCFAKM 469 (639)
Q Consensus 460 ~~a~~~~~~m 469 (639)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.76 E-value=0.00016 Score=55.68 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++.++.. +-+...+..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 34455566666666666665554322 45555566666666666666666666655543 23455555555556666666
Q ss_pred hHHHHHHHH
Q 037477 495 NGAYKLLVE 503 (639)
Q Consensus 495 ~~A~~~~~~ 503 (639)
++|.+.|++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.71 E-value=0.012 Score=52.68 Aligned_cols=217 Identities=11% Similarity=0.021 Sum_probs=147.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
.+..+-..+-+.|++++|.+.|++..+.| +...+..|-..|.. ..+...|...+......+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 44455666777899999999999998876 55566667677765 668899999998888765 344444444
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 451 QGHCA----ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 451 ~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
..+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~ 150 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGS 150 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhh
Confidence 44443 4678889999999888763 2233333333332 34466677777665543 35566777777
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHh----hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--
Q 037477 523 KLLG----ARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS----KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN-- 592 (639)
Q Consensus 523 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 592 (639)
.|.. ..+...+...++...+.|......-+..++. ...+.+.|+.+|++..+.. ++..+..|...|.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTS
T ss_pred hhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCC
Confidence 7765 5667888888888887664332223333332 2468999999999887763 67777888888875
Q ss_pred --cCCHHHHHHHHhhC
Q 037477 593 --EGRHYEAKDLLYKC 606 (639)
Q Consensus 593 --~g~~~~A~~~~~~m 606 (639)
..+.++|.+.|++-
T Consensus 229 g~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKG 244 (265)
T ss_dssp SSSCCSTTHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH
Confidence 34788999999884
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00014 Score=56.78 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=51.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR---FEDACNVLDEMEENGCIPD-IKTWTILIQGHC 454 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~ 454 (639)
+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4555555566666666666666554 3455555555555554333 3346666666555432222 124555556666
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 037477 455 AANEVDRALLCFAKMMEK 472 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~ 472 (639)
+.|++++|.+.|+++++.
T Consensus 84 ~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 666666666666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00025 Score=55.33 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE---VDRALLCFAKMMEKNYDAD-ADLLDVLING 487 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~-~~~~~~li~~ 487 (639)
..+++.+...+++++|.+.|++....+.. +..++..+..++.+.++ +++|..+++++...+..|+ ..++..|..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34566666677777777777777665432 55666666666665443 3456777776665443332 2345556666
Q ss_pred HHcCCChhHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~ 507 (639)
|.+.|++++|.+.|+.+.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777776654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.0022 Score=53.24 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+|+.+..+|.+.|++++|+..++..++.. +-+...+..+..+|...|++++|...|+...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555666666666666666666553 235555555666666666666666666665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0031 Score=52.34 Aligned_cols=110 Identities=15% Similarity=0.017 Sum_probs=84.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCC-C-------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFE-P-------------DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
+......+.+.|++++|...|.+..+.--. + -..+|+.+..+|.+.|++++|+..++...+....
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 344566788899999999999887754111 1 1234666788899999999999999999987533
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
+...|..+..+|...|++++|...|++.++.. +-|......+-..
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 139 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 78899999999999999999999999999874 2255554444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.0018 Score=50.76 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY--DAD----ADLLDVLIN 486 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~~li~ 486 (639)
.+...|.+.|++++|+..|.+..+.+.. +...|..+..+|.+.|++++|.+.++++++... ... ..+|..+-.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666554432 455566666666666666666666666554210 000 123444555
Q ss_pred HHHcCCChhHHHHHHHHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~ 506 (639)
.+...+++++|...|+....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 55555666666666655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.0019 Score=50.73 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-----HHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-----QATFKTL 520 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~l 520 (639)
+..+...|.+.|++++|...|.+.++.+ +.+...+..+..+|.+.|++++|...++.+.+...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456678889999999999999999875 457888888889999999999999999887653211122 2466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 037477 521 IEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~ 542 (639)
-..+...+++++|++.|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 7788888899999998887765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=0.0025 Score=53.26 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH----hCCCCCCHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE----KVRLRPWQA 515 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~ 515 (639)
..+..+...+...|++++|...++++++.. +-+...|..++.+|.+.|+.++|++.|+++.+ ..|+.|...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 445556666666677777777776666654 44666666667777777777777666666532 236666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.21 E-value=0.0081 Score=48.61 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+|+.+..+|.+.|++++|++.+++.++.+ +.+..+|..+..+|...|++++|...|+...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444455555555555555544443 23444444455555555555555555554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.12 E-value=0.0047 Score=51.55 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=79.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHC--CCC-----C--------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNA--GFE-----P--------------DNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~--g~~-----~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
.......|++++|.+.|...... |.. . ....+..+...+.+.|++++|+..++++.+..
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 97 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 97 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence 34667788888888888887764 110 0 01345678888999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 037477 439 CIPDIKTWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADL 480 (639)
Q Consensus 439 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 480 (639)
.. +...|..++.+|...|+.++|++.|+++.+ .|+.|...+
T Consensus 98 P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 98 PY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 43 889999999999999999999999999754 699998765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.10 E-value=0.0041 Score=51.49 Aligned_cols=108 Identities=15% Similarity=0.051 Sum_probs=58.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP-DIKTWTILIQGHCAA 456 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~ 456 (639)
.....+.+.|++++|++.|.+..+.. ..........+.. .+.| ....|..+..+|.+.
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA---------KLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG---------GGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH---------HhChhhHHHHHHHHHHHHhh
Confidence 35556778888888888887764310 0000000000000 0001 233455555666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 457 NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 457 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
|++++|+..+++.++.. +.+...|..+..+|.+.|++++|...|+...+.
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666666666666553 335556666666666666666666666666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.08 E-value=0.015 Score=46.87 Aligned_cols=105 Identities=12% Similarity=-0.030 Sum_probs=81.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCC----CCC-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 377 DGIHRALTKLGRFDEAEKMMKAMKNAGF----EPD-----------NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
......+.+.|++.+|...|.+..+.-. .++ ..+|+.+..+|.+.|++++|+..+++..+....
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~- 99 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN- 99 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch-
Confidence 3345677889999999999998775311 111 235667888899999999999999999887533
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
+..+|..+..++...|++++|...|++..+.. +-|..+...
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~ 140 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNS 140 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 78899999999999999999999999999875 224444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.07 E-value=0.048 Score=44.58 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037477 303 TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRA 382 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 382 (639)
.+......+.+.|++++|+..|...... +-.......... .....+ ...+|..+..+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~---------------~~~~~~~~~~~~-~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW---------------LEMEYGLSEKES-KASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HTTCCSCCHHHH-HHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhccchhhh-hhcchh-------HHHHHHhHHHH
Confidence 4455566778889999999888775431 000000000000 000000 01235556666
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|...|.+..+..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 677777777777777766654 4456666666677777777777777777766643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.03 E-value=0.0047 Score=51.09 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=33.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
.|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|+..|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444555555556666665555555443 334455555555555555555555555555553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.84 E-value=0.0011 Score=59.47 Aligned_cols=53 Identities=25% Similarity=0.225 Sum_probs=34.7
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
.+.|++++|+..+++..+.. +.|...+..+...|+..|++++|...|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566777777777666654 445566666677777777777777777666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.84 E-value=0.011 Score=48.59 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNA---GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
+......+.+.|++++|...|...... ....+.. .......+ ....|+.+..+
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------------ESKASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------------HHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------------hhhhcchh-------HHHHHHhHHHH
Confidence 344566778889999999888775532 0011100 00000011 12344455566
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+...+
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666653 34556666666666666666666666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.76 E-value=0.0057 Score=49.01 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----------ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037477 460 DRALLCFAKMMEKNYDADADLLDVLINGFLSQK-----------RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 528 (639)
++|...|++.++.. +-+..+|..+..+|...| .+++|.+.|+...+. .|+...|...+..+
T Consensus 58 ~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 58 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH----
Confidence 44555555554443 223444444444443332 245666667666543 56655555444333
Q ss_pred CHHHHHHHHHHHHhCC
Q 037477 529 RLEEAMNLLRLMKKQN 544 (639)
Q Consensus 529 ~~~~A~~~~~~m~~~~ 544 (639)
.+|.+++.+..+.|
T Consensus 130 --~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQG 143 (145)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHHh
Confidence 34556666655554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00042 Score=69.34 Aligned_cols=115 Identities=4% Similarity=-0.156 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+.+.|+.++|...+....... | ..++..+...+...|++++|...|.+..+.... +...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 4456667777788888888887776655321 1 246677888899999999999999998886533 55789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
+...|+..+|...|.+.+... .|-..++..|...+.+..
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 999999999999999998875 567788888877776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.48 E-value=0.0019 Score=57.84 Aligned_cols=120 Identities=12% Similarity=0.000 Sum_probs=78.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
.+.|++++|+..+++..+.... |...+..+...|+..|++++|.+.++...+.. +-+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 4679999999999999987654 78899999999999999999999999998864 123344444433333222222221
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 499 KLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.-...- ..-..|+ ...+......+...|+.++|.+.+..+.+
T Consensus 85 ~~~~~~--~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 85 QGAATA--KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TSCCCE--ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhhh--hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 111000 0001222 23344445667788999999999988876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.46 E-value=0.01 Score=47.41 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=83.0
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA----------GRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
|-+.+.+++|.+.|+...+.. +.+...+..+..+|... +.+++|+..|++..+.... +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 345567899999999998875 55677777777777643 4567899999999886543 67788888888
Q ss_pred HHHcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 453 HCAANE-----------VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 453 ~~~~g~-----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
|...|. +++|.+.|++.++. .|+...|..-+..+ .+|..++.+..+.
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQ 142 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 876653 57888888888876 46666655554443 4666777776554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.00028 Score=70.66 Aligned_cols=163 Identities=12% Similarity=-0.001 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGH--CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (639)
+..+.+.++...+....++..-....+..+ ...+.++.++..+....+.. .++...+..+-..+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 345556666655443333332222222221 12334444444433333221 223445566666677777777777766
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-h---HHHHHhhcCCHHHHHHHHHHhhcCCC
Q 037477 502 VEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-P---FVQYISKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 502 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~~g~~~~a~~~~~~~~~~~~ 577 (639)
...... .| ...+..+-..+...|++++|...|++..+ +.|+.. . +..++...|+..+|...|.+.....+
T Consensus 144 ~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~ 217 (497)
T d1ya0a1 144 SSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp CHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 655432 11 23566667777777888888888887776 345443 2 23333567888888888887777777
Q ss_pred CCHHHHHHHHHHHHhc
Q 037477 578 PSSAAYLQVFESFFNE 593 (639)
Q Consensus 578 ~~~~~~~~l~~~~~~~ 593 (639)
|.+.++..|...|.+.
T Consensus 218 ~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 218 PFPAASTNLQKALSKA 233 (497)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7778887777776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.33 E-value=0.043 Score=44.20 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=46.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC---
Q 037477 417 GLCKAGRFEDACNVLDEMEENGC-IPD----------IKTWTILIQGHCAANEVDRALLCFAKMMEK-----NYDAD--- 477 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~-~p~----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~--- 477 (639)
.+...|++++|+..|++..+... .|+ ...|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34455666666666666554210 011 245666666666667776666666665541 11111
Q ss_pred --HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 478 --ADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 478 --~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
...++.+-.+|...|++++|+..|++..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1133444555666666666666665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.17 E-value=0.027 Score=45.50 Aligned_cols=99 Identities=18% Similarity=0.075 Sum_probs=70.3
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHcCCChhHHHHHHHHHHHhC--
Q 037477 444 KTWTIL--IQGHCAANEVDRALLCFAKMMEKNY-DAD----------ADLLDVLINGFLSQKRVNGAYKLLVEMIEKV-- 508 (639)
Q Consensus 444 ~t~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~-~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 508 (639)
.+|..+ ...+...|++++|+..|++.++... .|+ ...|+.+..+|.+.|++++|...+++..+..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 4556678999999999999887311 121 3567888889999999999998888876421
Q ss_pred --CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 509 --RLRPW-----QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 509 --~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...++ ...|..+-.+|...|++++|++.|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22456677888889999999998888664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.26 E-value=0.38 Score=35.75 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=28.7
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 037477 277 ARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (639)
.-.|.+++..+++.+..... +..-||-+|-.....-+-+...+.++..
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~I 60 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKI 60 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHH
Confidence 34566777777777766543 5556666666555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.089 Score=37.94 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 516 TFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
++..+..++.+.|++++|++.++++.+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444444444444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.19 Score=36.00 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
+++.+..+|.+.|++++|.+.++++++
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 334444444444444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.46 E-value=1.2 Score=34.00 Aligned_cols=16 Identities=6% Similarity=-0.024 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHHCC
Q 037477 388 RFDEAEKMMKAMKNAG 403 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g 403 (639)
|+++|.+.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4455555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.83 E-value=1.3 Score=32.81 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK 333 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (639)
+....+..++.+.+.|+-++-.++++.+.+.+ +|++...-.+..+|.+.|...++.+++.+..+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 55667778889999999999999999977754 788888999999999999999999999998887753
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.61 E-value=1.6 Score=33.20 Aligned_cols=110 Identities=12% Similarity=0.008 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGAY 498 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 498 (639)
++++|...|++..+.|.. ..+..|. .....+.++|.+.+++..+.| +......|-..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 567788888887776632 2222222 233456777777777777766 34444444444443 34567777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 037477 499 KLLVEMIEKVRLRPWQATFKTLIEKLLG----ARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 544 (639)
++|+...+. + +......|-..|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~-g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhcc-C---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 777777654 3 23333444444443 346667777777666655
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.24 E-value=4.4 Score=28.32 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVI 415 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 415 (639)
|.-.+.+.+..+......|++.+..+.+++|-+.+|+..|.++|+..+... .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 444555666666666777777777777777777777777777777766432 22333454443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.82 E-value=7.1 Score=28.83 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 263 KHNTITYNGILRVLARHES---VRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
.+...|--....++++..+ +++++.+|++..+.+ +.+ ...+-.+.-+|.+.|++++|.+.++.+.+. .|+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n 106 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 106 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence 4566677777777887654 678999999988753 333 356677888899999999999999999874 4544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.80 E-value=5.9 Score=27.66 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
+.-++.+-++.+....+.|......+.+.+|.+.+++.-|.++|+.++.+.+. +...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 44456666666666777778888888888888888888888888777766433 233555544
|