Citrus Sinensis ID: 037499

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEcHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mnkakptspfRLASLLRLQKDPKLAlqlfknpnpnpnnteaqplkpfrynllHYDLIITKLGRAKMFDEVQQILHQLKhdtrvvpeeIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEkyvspdacsynilmHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA
Flexible Loop (DISEMBL)
mnkakptspfrlASLLRLQKDPKLALQlfknpnpnpnnteaqplKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQlkhdtrvvpEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELslalgfkeemvrnkiemda
Low Complexity Region (SEG)
MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA
Disordered region (IsUnstruct)
********************************************KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE***********
Disordered Region (DISOPRED)
*****PT***RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD*
Disordered Region (DISEMBL)
MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA
Disordered Region (DISPRO)
****KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9MAG8	471	Putative pentatricopeptid	yes	no	0.984	0.547	0.549	3e-79
Q9LQQ1	459	Pentatricopeptide repeat-	no	no	0.877	0.501	0.337	5e-29
Q9FFE3	535	Pentatricopeptide repeat-	no	no	0.923	0.452	0.291	2e-23
Q9LK57	394	Pentatricopeptide repeat-	no	no	0.923	0.614	0.278	3e-23
Q9LUD6	405	Pentatricopeptide repeat-	no	no	0.759	0.491	0.331	9e-23
Q9ZUU3	757	Pentatricopeptide repeat-	no	no	0.812	0.281	0.312	5e-21
Q8LDU5	466	Pentatricopeptide repeat-	no	no	0.885	0.497	0.299	2e-20
P0C7Q9	718	Pentatricopeptide repeat-	no	no	0.774	0.282	0.290	1e-19
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.790	0.277	0.276	3e-19
Q9LG23	398	Pentatricopeptide repeat-	no	no	0.916	0.603	0.276	3e-19

>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1

 Score =  295 bits (754), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/262 (54%), Positives = 195/262 (74%), Gaps = 4/262 (1%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           M+  K  S FRLASLLR + DP  A++LF+NP+P   N    P +PFRY+LL YD+IITK
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LG +KMFDE+ Q+L  LK DTR+VP EIIFCNVI+F+GR +L   AL +FDEM  +  QR
Sbjct: 57  LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS N+LL+A+L CG++++M +    ++++  PDAC+YNIL+HGC  S   +DA K+FD
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFD 176

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EM+K++++PT VTFGTLI+GLC + RV EALK+K DM++VY V+P   ++ASLIK LC +
Sbjct: 177 EMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQI 236

Query: 241 GELSLALGFKEEMVRNKIEMDA 262
           GELS A   K+E    KI++DA
Sbjct: 237 GELSFAFKLKDEAYEGKIKVDA 258

Involved during embryo development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 138/243 (56%), Gaps = 13/243 (5%)

Query: 5   KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
           KP       + L+  +DP+ AL LF          + Q +  FR++   Y  +I KL ++
Sbjct: 45  KPWEEVPFLTDLKEIEDPEEALSLFH---------QYQEMG-FRHDYPSYSSLIYKLAKS 94

Query: 65  KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
           + FD V QIL  +++   V   E +F  +I  YG+A  ++ A+ VF +++SF+  RT++S
Sbjct: 95  RNFDAVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQS 153

Query: 125 FNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
            NTL+N ++  G++++    F    +  + P++ S+NIL+ G +     E A KVFDEML
Sbjct: 154 LNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEML 213

Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
           +  +QP++VT+ +LI  LC    + +A  L EDM++   ++P+A  F  L+KGLC  GE 
Sbjct: 214 EMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIK-KRIRPNAVTFGLLMKGLCCKGEY 272

Query: 244 SLA 246
           + A
Sbjct: 273 NEA 275

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 12/254 (4%)

Query: 9   PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
           P RL S++  Q++  LALQ+F          ++ P   F +N   Y  I+ KL RA+ FD
Sbjct: 49  PKRLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFD 100

Query: 69  EVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
            V+ ++  L++    +   E +F +++  YG A   E ++++F  +  F V+R+V+S NT
Sbjct: 101 PVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNT 160

Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
           LLN ++   + D +  +F+  ++   ++P+  + N+L+        +E A+KV DE+   
Sbjct: 161 LLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM 220

Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
            L P LVT+ T++ G      ++ A ++ E+M+      PDA  +  L+ G C +G  S 
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSE 279

Query: 246 ALGFKEEMVRNKIE 259
           A    ++M +N+IE
Sbjct: 280 AATVMDDMEKNEIE 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 136/291 (46%), Gaps = 49/291 (16%)

Query: 4   AKPTSPF-RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
           A P+ P   L +L+  ++DPK   + FK         +A   + FR N+  Y+  + +L 
Sbjct: 32  ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82

Query: 63  RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
            AK F+ V++IL +      +  E  +   +I+ YGR  + E+A +VFDEM   N +RT 
Sbjct: 83  AAKKFEWVEEILEEQNKYPNMSKEGFV-ARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141

Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFD 180
            SFN LLNA +   K D +  +F+ +   +S  PD  SYN L+ G        +A  + D
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALID 201

Query: 181 EMLKRRLQPTLVTFGTLIY-----------------------------------GLCLEL 205
           E+  + L+P  +TF  L++                                   GL +E 
Sbjct: 202 EIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMEN 261

Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
           + +E + L  D ++   +KPD   F ++IKG  + G+L  A+ + +E+ +N
Sbjct: 262 KSEEMVSLF-DKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKN 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1

 Score =  107 bits (267), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 3/202 (1%)

Query: 54  YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
           Y L+I K G+AKM+DE+++++  +K + R    E  F N++  YG  A  +  A+++   
Sbjct: 98  YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157

Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
           M  F    + KSFN +LN +++    D +  +F    K  V  DAC  NIL+ G   S  
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGN 217

Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
           LE A ++ DE  +++ +P ++TF  LI G C + + +EA KL E M +   ++PD   F 
Sbjct: 218 LEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK-ERIEPDTITFN 276

Query: 232 SLIKGLCAVGELSLALGFKEEM 253
            LI GL   G +   +   E M
Sbjct: 277 ILISGLRKKGRVEEGIDLLERM 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1

 Score =  101 bits (252), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 8/221 (3%)

Query: 48  RYNLLHYDLIITKLGRAKMFDEVQQILHQ----LKHDTRVVP-EEIIFCNVISFYGRARL 102
           R  L+ +D   T +   KM  EV ++ H     L    + VP +E +F  +I  YG+A +
Sbjct: 142 RSGLIRHDRD-THMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGI 200

Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
           ++ ++++F +M    V+RT+KS+N+L   +L  G+       F +++ + V P   +YN+
Sbjct: 201 VQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNL 260

Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
           ++ G  +S RLE A + F++M  R + P   TF T+I G C   ++DEA KL  + M+  
Sbjct: 261 MLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVE-MKGN 319

Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
            + P    + ++IKG  AV  +   L   EEM  + IE +A
Sbjct: 320 KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNA 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 15/247 (6%)

Query: 3   KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
           K+   SP R+  L+  Q DP LA ++F   +  PN         FR++   + ++I KLG
Sbjct: 45  KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95

Query: 63  RAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
           R + F+ +  +L   KH +   P    IF  +I  Y  A+L E  L  F +M  FN    
Sbjct: 96  RGRYFNLIDDVL--AKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQ 153

Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
            K  N +L+ +++  G + +  +LF+    + V P+  SYN+LM    ++  L  A+++F
Sbjct: 154 PKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF 213

Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
            +ML+R + P + ++  LI G C + +V+ A++L +DM+    V PD   + +L+  LC 
Sbjct: 214 GKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDRLSYTTLLNSLCR 272

Query: 240 VGELSLA 246
             +L  A
Sbjct: 273 KTQLREA 279

Arabidopsis thaliana (taxid: 3702)

>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 7/210 (3%)

Query: 54  YDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
           Y+++I    +    +E ++    ++     V P    F  +I  Y +  L + A  V DE
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYS--FNPLIEGYCKQGLFDDAWGVTDE 333

Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
           M +  +  T  ++N  + A+   G+ID   D  +++    +PD  SYN LMHG +   + 
Sbjct: 334 MLNAGIYPTTSTYNIYICALCDFGRID---DARELLSSMAAPDVVSYNTLMHGYIKMGKF 390

Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
            +A  +FD++    + P++VT+ TLI GLC    ++ A +LKE+M     + PD   + +
Sbjct: 391 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL-IFPDVITYTT 449

Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
           L+KG    G LS+A    +EM+R  I+ D 
Sbjct: 450 LVKGFVKNGNLSMATEVYDEMLRKGIKPDG 479

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 3/210 (1%)

Query: 50  NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
           +++ Y  +I  + +A   +   + L Q++    + P E  +  ++  + +   +  A +V
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
             EM+      +V ++N L+N     GK+ D +  L  + EK +SPD  SY+ ++ G   
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462

Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
           S  +++A +V  EM+++ ++P  +T+ +LI G C + R  EA  L E+M+RV  + PD  
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV-GLPPDEF 521

Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
            + +LI   C  G+L  AL    EMV   +
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGV 551

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 46/286 (16%)

Query: 12  LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
           L SL+  +++PK  ++ FK         +A   + FR N+  YD  + +L  AK    V+
Sbjct: 44  LTSLVNGERNPKRIVEKFK---------KACESERFRTNIAVYDRTVRRLVAAKRLHYVE 94

Query: 72  QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
           +IL + K   R + +E     +IS YG+A + E+A +VF+EM + + +R+V SFN LL+A
Sbjct: 95  EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153

Query: 132 MLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
                K D + +LF  +   +S  PD  SYN L+        L +A  + DE+  + L+P
Sbjct: 154 YRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKP 213

Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDM--------MRVYN------------------- 222
            +VTF TL+    L+ + +   ++   M        +R YN                   
Sbjct: 214 DIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLF 273

Query: 223 -------VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
                  +KPD   F ++I+G    G++  A  + +E+V++    D
Sbjct: 274 GELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPD 319

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224117008	461	predicted protein [Populus trichocarpa]	0.973	0.553	0.613	3e-87
449456681	527	PREDICTED: putative pentatricopeptide re	0.977	0.485	0.573	2e-83
225461712	464	PREDICTED: putative pentatricopeptide re	0.969	0.547	0.591	3e-82
147840993	418	hypothetical protein VITISV_037241 [Viti	0.969	0.607	0.591	1e-81
224161575	230	predicted protein [Populus trichocarpa]	0.877	1.0	0.610	8e-78
15219274	471	pentatricopeptide repeat-containing prot	0.984	0.547	0.549	2e-77
297847728	472	pentatricopeptide repeat-containing prot	0.984	0.546	0.545	2e-77
255576901	610	pentatricopeptide repeat-containing prot	0.969	0.416	0.565	2e-77
357516331	303	hypothetical protein MTR_8g058400, parti	0.958	0.828	0.454	2e-59
449532274	394	PREDICTED: putative pentatricopeptide re	0.709	0.472	0.518	1e-53

>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa] gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 160/261 (61%), Positives = 200/261 (76%), Gaps = 6/261 (2%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           MN ++P +PFRLASLLRLQKDPKLALQLFKNPNP        P KPFRY+LL YDLIITK
Sbjct: 1   MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPK------TPSKPFRYSLLSYDLIITK 54

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LGRAKMF+E+Q+IL QLK +T   P+E +FC++I+FYGRARL E+AL++  E+ SF VQR
Sbjct: 55  LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS+N+LL+  L C   D+M +LF  +EK    DAC+YN+L+ G   S RL+DA KVFD
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFD 174

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EM  R + P ++TFG LIYG CL LR+ EA KLK DM++VY V P+A ++ASLIKG+C  
Sbjct: 175 EMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKN 234

Query: 241 GELSLALGFKEEMVRNKIEMD 261
           GELSLA   K+EM+RNKIE+D
Sbjct: 235 GELSLAFRLKKEMIRNKIELD 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like [Cucumis sativus]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/260 (57%), Positives = 196/260 (75%), Gaps = 4/260 (1%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           M   KP SPFRL+SLLRLQKDP LALQLF NPNP    + ++P KPFRY+LL YDLII+K
Sbjct: 69  MKTQKPISPFRLSSLLRLQKDPTLALQLFLNPNP----SSSEPPKPFRYSLLSYDLIISK 124

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LGRAKMFDE+++IL QLK +TR  P E+IFCNVI+FYGRA L + A QVF+ + SF  +R
Sbjct: 125 LGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKR 184

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS N+LL A+L   ++++MT +F  +  Y SPDAC++NIL+H   +   L+  W VFD
Sbjct: 185 TVKSVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFD 244

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EM KR ++P +VTFGTLIYGL L  ++ EAL+LKEDM++VY +KP+A ++ +LIKG C V
Sbjct: 245 EMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGV 304

Query: 241 GELSLALGFKEEMVRNKIEM 260
           GEL+ A   KEEMV + +++
Sbjct: 305 GELNFAFKLKEEMVTSNVKL 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like [Vitis vinifera]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/262 (59%), Positives = 200/262 (76%), Gaps = 8/262 (3%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           MN  KP SPFRL+SLLRLQ DPKLALQLF+NPNP+P        KPFRY  L YDLIITK
Sbjct: 1   MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LGR++MF E++QIL QL+ +TR  P+EIIFCNVISFYGRARL + A+Q F+ +  F  QR
Sbjct: 53  LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS N+LLNA+L C + ++   +   ++K+ +PD C+YN+L++ C  S  L DAW VFD
Sbjct: 113 TVKSLNSLLNALLKCKEFEKFDGILSGIDKFATPDVCTYNVLINACCSSGSLGDAWNVFD 172

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EML++ + P +VTFGTLI GLC + R+DEA +LKEDM++V+NVKP+A V+ASL+KGLC V
Sbjct: 173 EMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRV 232

Query: 241 GELSLALGFKEEMVRNKIEMDA 262
            ELSLA   K+EMV NK+ +D+
Sbjct: 233 NELSLAFELKKEMVANKLRLDS 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/262 (59%), Positives = 201/262 (76%), Gaps = 8/262 (3%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           MN  KP SPFRL+SLLRLQ  PKLALQLF+NPNP+P        KPFRY  L YDLIITK
Sbjct: 1   MNPPKPISPFRLSSLLRLQNGPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LGR++MF E++QIL QL+ +TR  P+EIIFCNVISFYGRARL + A+Q F+ +  F  QR
Sbjct: 53  LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS N+LLNA+L C + ++   +   ++K+ +P+ C+YNIL++ C +S RL DAW VFD
Sbjct: 113 TVKSLNSLLNALLNCKEFEKFDGILSGIDKFATPNVCTYNILINACCLSGRLGDAWNVFD 172

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EML++ + P +VTFGTLI GLC + R+DEA +LKEDM++V+NVKP+A V+ASL+KGLC V
Sbjct: 173 EMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRV 232

Query: 241 GELSLALGFKEEMVRNKIEMDA 262
            ELSLA   K+EMV NK+ +D+
Sbjct: 233 NELSLAFELKKEMVANKLRLDS 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224161575|ref|XP_002338346.1| predicted protein [Populus trichocarpa] gi|222871947|gb|EEF09078.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 144/236 (61%), Positives = 180/236 (76%), Gaps = 6/236 (2%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           MN ++P +PFRLASLLRLQKDPKLALQLFKNPNP        P KPFRY+LL YDLIITK
Sbjct: 1   MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPK------TPSKPFRYSLLSYDLIITK 54

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LGRAKMF+E+Q+IL QLK +T   P+E +FC++I+FYGRARL E+AL++  E+ SF VQR
Sbjct: 55  LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS+N+LL+  L C   D+M +LF  +EK    DAC+YN+L+ G   S RL+DA KVFD
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFD 174

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
           EM  R + P ++TFG LIYG CL LR+ EA KLK DM++VY V P+A ++ASLIKG
Sbjct: 175 EMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKG 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g53330 gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana] gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/262 (54%), Positives = 195/262 (74%), Gaps = 4/262 (1%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           M+  K  S FRLASLLR + DP  A++LF+NP+P   N    P +PFRY+LL YD+IITK
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LG +KMFDE+ Q+L  LK DTR+VP EIIFCNVI+F+GR +L   AL +FDEM  +  QR
Sbjct: 57  LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS N+LL+A+L CG++++M +    ++++  PDAC+YNIL+HGC  S   +DA K+FD
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFD 176

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EM+K++++PT VTFGTLI+GLC + RV EALK+K DM++VY V+P   ++ASLIK LC +
Sbjct: 177 EMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQI 236

Query: 241 GELSLALGFKEEMVRNKIEMDA 262
           GELS A   K+E    KI++DA
Sbjct: 237 GELSFAFKLKDEAYEGKIKVDA 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/262 (54%), Positives = 194/262 (74%), Gaps = 4/262 (1%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           M+  K  S FRLASLLR + DP  A++LF+NP+P   N    P +PFRY+LL YD+IITK
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAIKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LG +KMFDE+ Q+L QLK DTR+VP EI+FCNVI+F+GR RL   AL +FDEM  +  QR
Sbjct: 57  LGGSKMFDELDQVLLQLKTDTRIVPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQR 116

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           TVKS N+LLN +L CG+ ++M +    ++++  PDAC+YNIL+HGC      +DA K+FD
Sbjct: 117 TVKSLNSLLNTLLKCGEFEKMKERLSSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFD 176

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EM+K++++PT VTFGTLI+GLC  LRV EALK+K+DM++VY V+P   ++ASL+K LC +
Sbjct: 177 EMVKKKVKPTGVTFGTLIHGLCKNLRVKEALKMKQDMLKVYGVRPTVHIYASLVKALCQI 236

Query: 241 GELSLALGFKEEMVRNKIEMDA 262
           GELS A   K+E    KI++D+
Sbjct: 237 GELSFAFKLKDEAYEGKIKVDS 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/260 (56%), Positives = 194/260 (74%), Gaps = 6/260 (2%)

Query: 3   KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
           K K  S FRLASLLRLQ+DPKLAL LF++PN NPN       KPFRY+LL YDL+ITKLG
Sbjct: 5   KPKRISSFRLASLLRLQEDPKLALHLFQHPNSNPNP------KPFRYSLLCYDLMITKLG 58

Query: 63  RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
           RAKMF E++QIL Q K  TR+V +E +FCN+I+FYGRA L ++AL++FDEM  +  QRT+
Sbjct: 59  RAKMFHEMEQILLQFKTQTRLVAKEPLFCNIITFYGRAGLPQNALKMFDEMPLYRCQRTI 118

Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
           KS+NTLLN ++ C + D M + F  ++++V PD C++NI++ G     R++DA KV DEM
Sbjct: 119 KSYNTLLNVLMICKEFDVMREHFVNIKRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEM 178

Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
             R L P  VTFGTLIYGLCL L++ EA KLK+ M+ V+ + P+  V+A+LIKGLCAVGE
Sbjct: 179 KNRDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGLCAVGE 238

Query: 243 LSLALGFKEEMVRNKIEMDA 262
           LS AL  KEEM R+ +++D+
Sbjct: 239 LSFALRLKEEMERDGVKVDS 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516331|ref|XP_003628454.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula] gi|355522476|gb|AET02930.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/262 (45%), Positives = 168/262 (64%), Gaps = 11/262 (4%)

Query: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
           M  +KP SPFRL+SLLR QKDP LA Q+F NP  +           +RY++L YDLIITK
Sbjct: 1   MGSSKPISPFRLSSLLRSQKDPSLAFQIFLNPQNH-----------YRYSILSYDLIITK 49

Query: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
           LGRAKM  +++ IL QL +DTR    E + C+VISFY RARL   A+Q F  + SF    
Sbjct: 50  LGRAKMIPQMELILQQLHNDTRHRVPEPLLCHVISFYARARLPSRAVQTFLSIPSFRCTP 109

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           T+KSFN+LLNA+LTC +   +T     + ++  P+ C+YNIL+  C    R + A ++FD
Sbjct: 110 TLKSFNSLLNALLTCRRFQTITHFASRLSEFGPPNTCTYNILIRSCFFQGRTDRALELFD 169

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
           EM +  + P  VTFGTLI+GLC + R+ +A  +K+ M++ + +KP   V+ +L+KG+C +
Sbjct: 170 EMRRTNVCPDQVTFGTLIHGLCKDSRMHQAFGMKKLMIQEFKLKPCVSVYTNLMKGVCEI 229

Query: 241 GELSLALGFKEEMVRNKIEMDA 262
           GEL  A   K+EM RN + +D 
Sbjct: 230 GELHRAFEIKDEMERNGLRLDV 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like [Cucumis sativus]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 140/191 (73%)

Query: 70  VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
           +++IL QLK +TR  P E+IFCNVI+FYGRA L + A QVF+ + SF  +RTVKS N+LL
Sbjct: 1   MEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKSVNSLL 60

Query: 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
            A+L   ++++MT +F  +  Y SPDAC++NIL+H   +   L+  W VFDEM KR ++P
Sbjct: 61  AALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVKP 120

Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
            +VTFGTLIYGL L  ++ EAL+LKEDM++VY +KP+A ++ +LIKG C VGEL+ A   
Sbjct: 121 NVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFAFKL 180

Query: 250 KEEMVRNKIEM 260
           KEEMV + +++
Sbjct: 181 KEEMVTSNVKL 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2009620	471	AT1G53330 [Arabidopsis thalian	0.984	0.547	0.549	6.3e-76
TAIR|locus:2026560	459	AT1G07740 "AT1G07740" [Arabido	0.854	0.488	0.347	3.4e-29
TAIR|locus:2089581	405	AT3G14580 "AT3G14580" [Arabido	0.908	0.587	0.317	1.6e-24
TAIR|locus:2171352	535	AT5G16420 "AT5G16420" [Arabido	0.923	0.452	0.295	9.4e-24
TAIR|locus:2090034	394	AT3G13160 [Arabidopsis thalian	0.942	0.626	0.279	1.3e-21
TAIR|locus:2049756	757	AT2G37230 [Arabidopsis thalian	0.812	0.281	0.312	3.2e-21
TAIR|locus:2017754	718	AT1G22960 [Arabidopsis thalian	0.770	0.281	0.291	4.3e-21
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.790	0.343	0.292	4.6e-21
TAIR|locus:2125152	1110	AT4G01400 "AT4G01400" [Arabido	0.904	0.213	0.307	6e-21
TAIR|locus:2090014	551	AT3G13150 "AT3G13150" [Arabido	0.778	0.370	0.306	2.5e-20

TAIR|locus:2009620 AT1G53330 [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 144/262 (54%), Positives = 195/262 (74%)

Query:     1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
             M+  K  S FRLASLLR + DP  A++LF+NP+P   N    P +PFRY+LL YD+IITK
Sbjct:     1 MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query:    61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
             LG +KMFDE+ Q+L  LK DTR+VP EIIFCNVI+F+GR +L   AL +FDEM  +  QR
Sbjct:    57 LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116

Query:   121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
             TVKS N+LL+A+L CG++++M +    ++++  PDAC+YNIL+HGC  S   +DA K+FD
Sbjct:   117 TVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFD 176

Query:   181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
             EM+K++++PT VTFGTLI+GLC + RV EALK+K DM++VY V+P   ++ASLIK LC +
Sbjct:   177 EMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQI 236

Query:   241 GELSLALGFKEEMVRNKIEMDA 262
             GELS A   K+E    KI++DA
Sbjct:   237 GELSFAFKLKDEAYEGKIKVDA 258

GO:0005739 "mitochondrion" evidence=ISM

GO:0009790 "embryo development" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2026560 AT1G07740 "AT1G07740" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 83/239 (34%), Positives = 138/239 (57%)

Query:     9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
             PF L  L  ++ DP+ AL LF          + Q +  FR++   Y  +I KL +++ FD
Sbjct:    51 PF-LTDLKEIE-DPEEALSLFH---------QYQEMG-FRHDYPSYSSLIYKLAKSRNFD 98

Query:    69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
              V QIL  +++   V   E +F  +I  YG+A  ++ A+ VF +++SF+  RT++S NTL
Sbjct:    99 AVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTL 157

Query:   129 LNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
             +N ++  G++++    F    +  + P++ S+NIL+ G +     E A KVFDEML+  +
Sbjct:   158 INVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEV 217

Query:   188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
             QP++VT+ +LI  LC    + +A  L EDM++   ++P+A  F  L+KGLC  GE + A
Sbjct:   218 QPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKK-RIRPNAVTFGLLMKGLCCKGEYNEA 275

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089581 AT3G14580 "AT3G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 79/249 (31%), Positives = 126/249 (50%)

Query:    15 LLRLQ-KD---PKLALQLFKN-PNPN---PNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
             L RL+ KD   P   L++F N  +P+   P        K ++     Y L+I K G+AKM
Sbjct:    51 LARLRHKDWLAPNEVLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKM 110

Query:    67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDEMSSFNVQRTVKSF 125
             +DE+++++  +K + R    E  F N++  YG  A  +  A+++   M  F    + KSF
Sbjct:   111 YDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSF 170

Query:   126 NTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
             N +LN +++    D +  +F    K  V  DAC  NIL+ G   S  LE A ++ DE  +
Sbjct:   171 NFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQ 230

Query:   185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
             ++ +P ++TF  LI G C + + +EA KL E M +   ++PD   F  LI GL   G + 
Sbjct:   231 QKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKE-RIEPDTITFNILISGLRKKGRVE 289

Query:   245 LALGFKEEM 253
               +   E M
Sbjct:   290 EGIDLLERM 298

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 9.4e-24, P = 9.4e-24
 Identities = 75/254 (29%), Positives = 135/254 (53%)

Query:     9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
             P RL S++  Q++  LALQ+F          ++ P   F +N   Y  I+ KL RA+ FD
Sbjct:    49 PKRLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFD 100

Query:    69 EVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
              V+ ++  L++    +   E +F +++  YG A   E ++++F  +  F V+R+V+S NT
Sbjct:   101 PVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNT 160

Query:   128 LLNAMLTCGKIDRMTDLFQ-IMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
             LLN ++   + D +  +F+   E + ++P+  + N+L+        +E A+KV DE+   
Sbjct:   161 LLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM 220

Query:   186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
              L P LVT+ T++ G      ++ A ++ E+M+      PDA  +  L+ G C +G  S 
Sbjct:   221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSE 279

Query:   246 ALGFKEEMVRNKIE 259
             A    ++M +N+IE
Sbjct:   280 AATVMDDMEKNEIE 293

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090034 AT3G13160 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 73/261 (27%), Positives = 130/261 (49%)

Query:     4 AKPTSPF-RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
             A P+ P   L +L+  ++DPK   + FK         +A   + FR N+  Y+  + +L 
Sbjct:    32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82

Query:    63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
              AK F+ V++IL +      +  E  +   +I+ YGR  + E+A +VFDEM   N +RT 
Sbjct:    83 AAKKFEWVEEILEEQNKYPNMSKEGFV-ARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141

Query:   123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFD 180
              SFN LLNA +   K D +  +F+ +   +S  PD  SYN L+ G        +A  + D
Sbjct:   142 LSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALID 201

Query:   181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
             E+  + L+P  +TF  L++    + + +E  ++   M+   NVK D + + + + GL   
Sbjct:   202 EIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEK-NVKRDIRSYNARLLGLAME 260

Query:   241 GELSLALGFKEEMVRNKIEMD 261
              +    +   +++  N+++ D
Sbjct:   261 NKSEEMVSLFDKLKGNELKPD 281

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2049756 AT2G37230 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 69/221 (31%), Positives = 118/221 (53%)

Query:    48 RYNLLHYDLIITKLGRAKMFDEVQQILHQ----LKHDTRVVP-EEIIFCNVISFYGRARL 102
             R  L+ +D   T +   KM  EV ++ H     L    + VP +E +F  +I  YG+A +
Sbjct:   142 RSGLIRHDRD-THMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGI 200

Query:   103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
             ++ ++++F +M    V+RT+KS+N+L   +L  G+       F +++ + V P   +YN+
Sbjct:   201 VQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNL 260

Query:   162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
             ++ G  +S RLE A + F++M  R + P   TF T+I G C   ++DEA KL  +M +  
Sbjct:   261 MLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEM-KGN 319

Query:   222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
              + P    + ++IKG  AV  +   L   EEM  + IE +A
Sbjct:   320 KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNA 360

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2017754 AT1G22960 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
 Identities = 61/209 (29%), Positives = 106/209 (50%)

Query:    54 YDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
             Y+++I    +    +E ++    ++     V P    F  +I  Y +  L + A  V DE
Sbjct:   276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYS--FNPLIEGYCKQGLFDDAWGVTDE 333

Query:   113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
             M +  +  T  ++N  + A+   G+ID   D  +++    +PD  SYN LMHG +   + 
Sbjct:   334 MLNAGIYPTTSTYNIYICALCDFGRID---DARELLSSMAAPDVVSYNTLMHGYIKMGKF 390

Query:   173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
              +A  +FD++    + P++VT+ TLI GLC    ++ A +LKE+M     + PD   + +
Sbjct:   391 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL-IFPDVITYTT 449

Query:   233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
             L+KG    G LS+A    +EM+R  I+ D
Sbjct:   450 LVKGFVKNGNLSMATEVYDEMLRKGIKPD 478

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 4.6e-21, Sum P(2) = 4.6e-21
 Identities = 62/212 (29%), Positives = 111/212 (52%)

Query:    45 KPFRYNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
             K F  + + Y+++I  L  R K+ D   ++L+QL  D    P  I +  +I        +
Sbjct:   187 KDFSPDTVTYNIMIGSLCSRGKL-DLALKVLNQLLSDN-CQPTVITYTILIEATMLEGGV 244

Query:   104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
             + AL++ DEM S  ++  + ++NT++  M   G +DR  ++ + +E K   PD  SYNIL
Sbjct:   245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNIL 304

Query:   163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
             +   +   + E+  K+  +M   +  P +VT+  LI  LC + +++EA+ L + +M+   
Sbjct:   305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKG 363

Query:   223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
             + PDA  +  LI   C  G L +A+ F E M+
Sbjct:   364 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2125152 AT4G01400 "AT4G01400" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 6.0e-21, P = 6.0e-21
 Identities = 79/257 (30%), Positives = 130/257 (50%)

Query:     2 NKAKPT-SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
             N   P  SP R+  L+  Q DP LA ++F   +  PN         FR++   + ++I K
Sbjct:    43 NPKSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILK 93

Query:    61 LGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
             LGR + F+ +  +L   KH +   P    IF  +I  Y  A+L E  L  F +M  FN  
Sbjct:    94 LGRGRYFNLIDDVL--AKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFT 151

Query:   120 RTVKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWK 177
                K  N +L+ +++  G + +  +LF+    + V P+  SYN+LM    ++  L  A++
Sbjct:   152 PQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQ 211

Query:   178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
             +F +ML+R + P + ++  LI G C + +V+ A++L +DM+    V PD     +LI GL
Sbjct:   212 LFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDR----TLIGGL 266

Query:   238 CAVGELSLALGFKEEMV 254
             C  G       + EEM+
Sbjct:   267 CDQGMFDEGKKYLEEMI 283

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 65/212 (30%), Positives = 112/212 (52%)

Query:    54 YDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
             Y   I +L  AK F  + ++L +Q K D  +  E+ +   ++  YG + + EHA ++FDE
Sbjct:    90 YSAFIRRLREAKKFSTIDEVLQYQKKFDD-IKSEDFVI-RIMLLYGYSGMAEHAHKLFDE 147

Query:   113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSR 170
             M   N +RTVKSFN LL+A +   K+D     F ++ EK  ++PD  +YN ++       
Sbjct:   148 MPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKG 207

Query:   171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDMMRVYNVKPDAQV 229
              ++D   +F+E+ K   +P L++F TL+      EL V E  ++  D+M+  N+ P+ + 
Sbjct:   208 SMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFV-EGDRIW-DLMKSKNLSPNIRS 265

Query:   230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
             + S ++GL    + + AL   + M    I  D
Sbjct:   266 YNSRVRGLTRNKKFTDALNLIDVMKTEGISPD 297

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-06
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-05
pfam01535	31	pfam01535, PPR, PPR repeat	6e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	4e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.003

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 68.2 bits (168), Expect = 2e-15
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
           PD  +YN L+ G     ++E+A K+F+EM KR ++P + T+  LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.4 bits (127), Expect = 1e-09
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
           P +VT+ TLI G C + +V+EALKL  +M +   +KP+   ++ LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
           N LL+  + CG+++   + F   EK    D  S+NIL+ G V   +   A ++F+ M++ 
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEK----DVVSWNILLTGYVAHGKGSMAVELFNRMVES 583

Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
            + P  VTF +L+        V + L+    M   Y++ P+ + +A ++  L   G+L+ 
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643

Query: 246 ALGFKEEM 253
           A  F  +M
Sbjct: 644 AYNFINKM 651

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 47/215 (21%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 51  LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
           L  ++++++    ++  D   ++L +L  +  +  +  ++  +IS   ++  ++   +VF
Sbjct: 437 LSTFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495

Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVS 169
            EM +  V+  V +F  L++     G++ +    + IM  K V PD   +N L+  C  S
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555

Query: 170 RRLEDAWKVFDEMLKRRLQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
             ++ A+ V  EM K    P     +T G L+       +VD A ++ + M+  YN+K  
Sbjct: 556 GAVDRAFDVLAEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGT 613

Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
            +V+   +      G+   AL   ++M +  ++ D
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 55.3 bits (133), Expect = 9e-09
 Identities = 40/184 (21%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 40  EAQPLKPFRYNLLHYDLIITKLGRAKMFD---EVQQILHQLKHDTRVVPEEIIFCNVISF 96
           E  P+ P   + +    ++     A   D   EV Q++H  +++ +  PE  ++   ++ 
Sbjct: 571 ETHPIDP---DHITVGALMKACANAGQVDRAKEVYQMIH--EYNIKGTPE--VYTIAVNS 623

Query: 97  YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
             +    + AL ++D+M    V+     F+ L++     G +D+  ++ Q   K  +   
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683

Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
             SY+ LM  C  ++  + A ++++++   +L+PT+ T   LI  LC   ++ +AL++  
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743

Query: 216 DMMR 219
           +M R
Sbjct: 744 EMKR 747

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.2 bits (116), Expect = 4e-08
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
           V ++NTL++     GK++    LF  M+K  + P+  +Y+IL+ G 
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
            +YN L+ G   + R+E+A ++F EM +R ++P 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 31/168 (18%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 62  GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
           G A   D+  +IL   +    +    + + +++     A+  + AL++++++ S  ++ T
Sbjct: 660 GHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718

Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFD 180
           V + N L+ A+    ++ +  ++   M++  + P+  +Y+IL+         +    +  
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778

Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
           +  +  ++P LV    +  GLCL  R ++A  L E ++   + +P  +
Sbjct: 779 QAKEDGIKPNLVMCRCIT-GLCLR-RFEKACALGEPVVSFDSGRPQIE 824

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
           + L+P +VT+ TLI GLC   RVDEA++L ++M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 10/185 (5%)

Query: 68  DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS--- 124
           +E   + ++++ D+ V  ++  F  +I  + R  LLEHA Q    +    ++        
Sbjct: 307 EEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL----IRTGFPLDIV 361

Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
            NT L   L   K  RM D   + ++    +  S+N L+ G     R   A ++F+ M+ 
Sbjct: 362 ANTAL-VDLYS-KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419

Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
             + P  VTF  ++         ++  ++ + M   + +KP A  +A +I+ L   G L 
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479

Query: 245 LALGF 249
            A   
Sbjct: 480 EAYAM 484

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
           T+ +FN L++   +   ID    + +++++  +  D   Y  L+  C  S +++  ++VF
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495

Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
            EM+   ++  + TFG LI G     +V +A      +MR  NVKPD  VF +LI     
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFG-AYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 240 VGELSLALGFKEEM 253
            G +  A     EM
Sbjct: 555 SGAVDRAFDVLAEM 568

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
           +YN L+ G   + +LE+A ++F EM ++ +
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.3 bits (93), Expect = 7e-05
 Identities = 11/48 (22%), Positives = 28/48 (58%)

Query: 85  PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
           P+ + +  +I  Y +   +E AL++F+EM    ++  V +++ L++ +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.7 bits (89), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
           + PD  +YN L+ G   + R+++A ++ DEM
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
           +YN L+     +   + A  V +EM    L+P
Sbjct: 3   TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
           PD   + +LI G C  G++  AL    EM +  I+ + 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 93  VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-- 150
           +IS Y +  L + AL+ +  M   NV     +  ++L+A    G +D    L ++ E+  
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419

Query: 151 ---YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
              YV       N L+      + ++ A +VF  + ++     ++++ ++I GL L  R 
Sbjct: 420 LISYV----VVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRC 471

Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
            EAL     M  +  +KP++    + +     +G L 
Sbjct: 472 FEALIFFRQM--LLTLKPNSVTLIAALSACARIGALM 506

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
           VT+ TLI GLC   RV+EAL+L ++M     ++PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKE-RGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 46/211 (21%)

Query: 70  VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
             Q LH     T VV +  + C +I  Y +   +E A  VFD M     ++T  ++N++L
Sbjct: 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSML 297

Query: 130 NAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM---------------HGCVVSR--- 170
                 G  +    L+  M +  VS D  +++I++               H  ++     
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357

Query: 171 -----------------RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
                            R+EDA  VFD M ++     L+++  LI G     R  +A+++
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEM 413

Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
            E M+    V P+   F +++   C    LS
Sbjct: 414 FERMI-AEGVAPNHVTFLAVLSA-CRYSGLS 442

Length = 697

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.75
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.7
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.7
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.68
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.68
PRK12370	553	invasion protein regulator; Provisional	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.67
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.66
PRK12370	553	invasion protein regulator; Provisional	99.66
KOG1126	638	consensus DNA-binding cell division cycle control	99.66
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.6
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.6
KOG1129	478	consensus TPR repeat-containing protein [General f	99.59
KOG1126	638	consensus DNA-binding cell division cycle control	99.58
PRK14574	822	hmsH outer membrane protein; Provisional	99.57
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.56
PF13041	50	PPR_2: PPR repeat family	99.54
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.52
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.52
PF13041	50	PPR_2: PPR repeat family	99.5
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.5
PRK11189	296	lipoprotein NlpI; Provisional	99.49
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.48
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.48
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.47
KOG2003	840	consensus TPR repeat-containing protein [General f	99.47
PRK11189	296	lipoprotein NlpI; Provisional	99.46
PRK14574	822	hmsH outer membrane protein; Provisional	99.43
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.41
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.39
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.39
KOG1129	478	consensus TPR repeat-containing protein [General f	99.36
KOG2076	895	consensus RNA polymerase III transcription factor	99.35
KOG2076	895	consensus RNA polymerase III transcription factor	99.35
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.35
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.35
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.32
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.28
KOG1125	579	consensus TPR repeat-containing protein [General f	99.27
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.27
KOG2003	840	consensus TPR repeat-containing protein [General f	99.26
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.23
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.22
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.22
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.21
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.2
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.19
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.19
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.19
PLN02789	320	farnesyltranstransferase	99.18
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.17
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.15
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.14
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.12
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.12
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.08
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.07
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.07
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.06
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.04
PF12854	34	PPR_1: PPR repeat	99.02
PRK15359	144	type III secretion system chaperone protein SscB;	99.01
PF12854	34	PPR_1: PPR repeat	99.01
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.0
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.99
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.99
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.98
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.98
PRK15359	144	type III secretion system chaperone protein SscB;	98.95
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.94
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.92
PLN02789	320	farnesyltranstransferase	98.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.91
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.89
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.88
KOG1125	579	consensus TPR repeat-containing protein [General f	98.87
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.85
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.84
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.81
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.75
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.73
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.71
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.71
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.69
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.68
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.68
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.67
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.63
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.63
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.61
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.6
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.6
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.58
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.58
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.57
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.57
PRK04841	903	transcriptional regulator MalT; Provisional	98.57
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.56
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.55
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.53
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.52
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.49
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.47
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.46
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.45
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.43
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.43
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.42
PRK04841	903	transcriptional regulator MalT; Provisional	98.42
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.42
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.42
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.42
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.37
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.36
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.35
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.35
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.34
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.31
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.3
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.29
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.28
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.25
PF12688	120	TPR_5: Tetratrico peptide repeat	98.25
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.21
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.2
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.19
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.19
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.18
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.18
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.15
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.14
KOG0553	304	consensus TPR repeat-containing protein [General f	98.13
KOG0553	304	consensus TPR repeat-containing protein [General f	98.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.06
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.05
PF12688	120	TPR_5: Tetratrico peptide repeat	98.04
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.02
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.0
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.0
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.98
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.97
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.96
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.95
PRK10803	263	tol-pal system protein YbgF; Provisional	97.87
PRK10803	263	tol-pal system protein YbgF; Provisional	97.84
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.84
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.82
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.78
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.78
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.76
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.76
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.75
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.73
PF13371	73	TPR_9: Tetratricopeptide repeat	97.71
PF13371	73	TPR_9: Tetratricopeptide repeat	97.69
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	97.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.66
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.61
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.58
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.57
PRK15331	165	chaperone protein SicA; Provisional	97.54
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.54
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.49
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.45
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.44
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.41
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.41
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.32
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.29
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.28
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.26
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.24
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.2
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.19
PRK15331	165	chaperone protein SicA; Provisional	97.17
PF13512	142	TPR_18: Tetratricopeptide repeat	97.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.08
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.08
PRK11906	458	transcriptional regulator; Provisional	97.06
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.05
smart00299	140	CLH Clathrin heavy chain repeat homology.	97.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.04
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.96
KOG4555	175	consensus TPR repeat-containing protein [Function	96.9
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.88
KOG3941	406	consensus Intermediate in Toll signal transduction	96.87
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.85
PF13428	44	TPR_14: Tetratricopeptide repeat	96.77
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.74
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.72
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.72
PRK11906	458	transcriptional regulator; Provisional	96.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.63
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.59
KOG3941	406	consensus Intermediate in Toll signal transduction	96.57
PF13428	44	TPR_14: Tetratricopeptide repeat	96.56
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.54
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.53
KOG4555	175	consensus TPR repeat-containing protein [Function	96.44
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.38
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.34
COG1747	711	Uncharacterized N-terminal domain of the transcrip	96.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.29
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	96.25
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.22
PF13512	142	TPR_18: Tetratricopeptide repeat	96.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.13
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.94
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.91
PF13431	34	TPR_17: Tetratricopeptide repeat	95.86
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.81
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.71
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.69
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.57
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.57
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	95.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.55
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.54
PF13929	292	mRNA_stabil: mRNA stabilisation	95.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.38
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.38
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.3
KOG4570	418	consensus Uncharacterized conserved protein [Funct	95.27
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.24
KOG1258	577	consensus mRNA processing protein [RNA processing	95.19
KOG1258	577	consensus mRNA processing protein [RNA processing	95.14
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.03
PF13431	34	TPR_17: Tetratricopeptide repeat	95.0
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.9
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.79
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.76
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.71
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.59
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.5
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.4
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	94.35
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.21
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.12
KOG1585	308	consensus Protein required for fusion of vesicles	94.03
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.9
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.89
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.83
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.82
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.81
KOG4648	536	consensus Uncharacterized conserved protein, conta	93.53
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.51
KOG4234	271	consensus TPR repeat-containing protein [General f	93.46
KOG4234	271	consensus TPR repeat-containing protein [General f	93.32
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.3
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.25
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.2
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.18
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.15
COG3947	361	Response regulator containing CheY-like receiver a	93.11
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.84
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.8
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.8
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.58
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.45
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.42
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.32
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.24
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	92.24
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.98
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.73
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.68
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	91.4
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.33
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.32
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.29
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	91.28
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.14
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.07
PF13934	226	ELYS: Nuclear pore complex assembly	91.02
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	90.88
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	90.57
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.51
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.33
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.27
KOG1586	288	consensus Protein required for fusion of vesicles	90.23
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.18
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.83
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.71
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	89.69
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.54
KOG1586	288	consensus Protein required for fusion of vesicles	89.25
PF13877	94	RPAP3_C: Potential Monad-binding region of RPAP3	89.13
PRK10941	269	hypothetical protein; Provisional	88.97
PRK09687	280	putative lyase; Provisional	88.73
PRK09687	280	putative lyase; Provisional	88.63
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.45
KOG4507	886	consensus Uncharacterized conserved protein, conta	88.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.79
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	87.78
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	87.51
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.46
PF13762	145	MNE1: Mitochondrial splicing apparatus component	87.18
KOG1585	308	consensus Protein required for fusion of vesicles	87.12
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.86
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	86.68
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	86.57
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.51
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.43
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	86.11
PRK10941	269	hypothetical protein; Provisional	85.88
KOG2471	696	consensus TPR repeat-containing protein [General f	85.71
COG3947	361	Response regulator containing CheY-like receiver a	85.71
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.43
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	85.18
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	84.32
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	83.76
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	83.55
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	83.0
COG5108	1117	RPO41 Mitochondrial DNA-directed RNA polymerase [T	82.42
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.27
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	81.37
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.32
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	81.05
KOG2908	380	consensus 26S proteasome regulatory complex, subun	80.89
PRK10564	303	maltose regulon periplasmic protein; Provisional	80.86
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	80.7
KOG2062	929	consensus 26S proteasome regulatory complex, subun	80.6
KOG1550	552	consensus Extracellular protein SEL-1 and related	80.39
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	80.17
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	80.03
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	80.02

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.6e-46  Score=320.16  Aligned_cols=247  Identities=18%  Similarity=0.273  Sum_probs=162.7

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TR   82 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~   82 (262)
                      |+..+|+.+|.+|++.|++++|+++|+.|...          +..||..+|+.+|.+|++.|++++|.++|++|... .|
T Consensus       505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~----------Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g  574 (1060)
T PLN03218        505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSK----------NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP  574 (1060)
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence            55666666666666666666666666666443          55666666666666666666666666666666542 24


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNI  161 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~  161 (262)
                      +.||..+|+.+|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|...+. ||..+|+.
T Consensus       575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns  654 (1060)
T PLN03218        575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA  654 (1060)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            56666666666666666666666666666666666666666666666666666666666666666666665 66666666


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG  241 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  241 (262)
                      ++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. ++.||..+|+.||.+|++.|
T Consensus       655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G  733 (1060)
T PLN03218        655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGN  733 (1060)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCC
Confidence            66666666666666666666666666666666666666666666666666666666554 66666666666666666666


Q ss_pred             ChhHHHHHHHHHHHcCCCCC
Q 037499          242 ELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       242 ~~~~a~~~~~~m~~~g~~pd  261 (262)
                      ++++|.++|++|.+.|+.||
T Consensus       734 ~~eeAlelf~eM~~~Gi~Pd  753 (1060)
T PLN03218        734 QLPKALEVLSEMKRLGLCPN  753 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCC
Confidence            66666666666666666665

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.9e-45  Score=317.40  Aligned_cols=250  Identities=16%  Similarity=0.271  Sum_probs=241.5

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      +|+..+|+.|+.+|++.|++++|.++|+.|....        .+..||..+|++++.+|++.|++++|.++|++|.+. |
T Consensus       539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~--------~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-g  609 (1060)
T PLN03218        539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-N  609 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc--------CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C
Confidence            5788999999999999999999999999996532        378899999999999999999999999999999996 8


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNI  161 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~  161 (262)
                      ++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.+. ||..+|++
T Consensus       610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns  689 (1060)
T PLN03218        610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS  689 (1060)
T ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988 99999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG  241 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  241 (262)
                      +|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|
T Consensus       690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G  768 (1060)
T PLN03218        690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKD  768 (1060)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999877 99999999999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCCCCC
Q 037499          242 ELSLALGFKEEMVRNKIEMDA  262 (262)
Q Consensus       242 ~~~~a~~~~~~m~~~g~~pd~  262 (262)
                      ++++|.+++++|.+.|+.||.
T Consensus       769 ~le~A~~l~~~M~k~Gi~pd~  789 (1060)
T PLN03218        769 DADVGLDLLSQAKEDGIKPNL  789 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCH
Confidence            999999999999999999983

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.2e-42  Score=296.06  Aligned_cols=238  Identities=17%  Similarity=0.229  Sum_probs=226.0

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      .++..+++.|+.+|++.|++++|.++|+.|..              +|..+|++++.+|++.|++++|+++|++|.+. |
T Consensus       256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g  320 (697)
T PLN03081        256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-G  320 (697)
T ss_pred             CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence            36778899999999999999999999999932              48999999999999999999999999999886 8


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      +.||..||+.++.+|++.|++++|.+++..|.+.|++|+..+|++|+.+|++.|++++|.++|++|.+   +|..+||++
T Consensus       321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~l  397 (697)
T PLN03081        321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNAL  397 (697)
T ss_pred             CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999975   899999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      |.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|+.++.+|++.|+
T Consensus       398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~  477 (697)
T PLN03081        398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL  477 (697)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999998877999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCC
Q 037499          243 LSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       243 ~~~a~~~~~~m~~~g~~pd  261 (262)
                      +++|.+++++|   ++.||
T Consensus       478 ~~eA~~~~~~~---~~~p~  493 (697)
T PLN03081        478 LDEAYAMIRRA---PFKPT  493 (697)
T ss_pred             HHHHHHHHHHC---CCCCC
Confidence            99999998765   56666

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.2e-41  Score=288.23  Aligned_cols=252  Identities=16%  Similarity=0.169  Sum_probs=196.9

Q ss_pred             CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCC-------------------------CCCCCCCCCHHHHH
Q 037499            1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEA-------------------------QPLKPFRYNLLHYD   55 (262)
Q Consensus         1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~   55 (262)
                      |..|+..+|+.++.+|++.|++++|+++|++|...+.....                         ....+..+|..+|+
T Consensus       184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n  263 (697)
T PLN03081        184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC  263 (697)
T ss_pred             CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence            34567777888888888888888888888877544211000                         00123455666677


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC  135 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  135 (262)
                      +++.+|++.|++++|.++|++|.+     +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~  338 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL  338 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            777777777777777777777753     467788888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499          136 GKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK  214 (262)
Q Consensus       136 g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  214 (262)
                      |++++|.+++..|.+.+. +|..+|++++.+|++.|++++|.++|++|.+    ||..+|+.+|.+|++.|+.++|.++|
T Consensus       339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf  414 (697)
T PLN03081        339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMF  414 (697)
T ss_pred             cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888888888776 8888888888888888888888888888754    67888888888888888888899999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCC
Q 037499          215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR-NKIEMDA  262 (262)
Q Consensus       215 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~pd~  262 (262)
                      ++|.+. |+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.||.
T Consensus       415 ~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~  462 (697)
T PLN03081        415 ERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA  462 (697)
T ss_pred             HHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence            888776 8889999999999999999999999999999876 5888873

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.4e-40  Score=285.19  Aligned_cols=241  Identities=17%  Similarity=0.138  Sum_probs=140.7

Q ss_pred             CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499            1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      |.+|+..+|+.++.+|++.|++++|+++|+.|...          +..||..+|+.++.+|++.+++..+.+++..+.+.
T Consensus       147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~----------g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~  216 (857)
T PLN03077        147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA----------GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF  216 (857)
T ss_pred             CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc----------CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence            34566677777777777777777777777776543          44555555544444444444444444444444442


Q ss_pred             CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHH
Q 037499           81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSY  159 (262)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~  159 (262)
                       |+.|+..+++.|+.+|++.|+++.|.++|++|.    .||..+||+++.+|++.|+.++|+++|++|...+. ||..||
T Consensus       217 -g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty  291 (857)
T PLN03077        217 -GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI  291 (857)
T ss_pred             -CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence             444444455555555555555555555555554    34555566666666666666666666666655555 566666


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA  239 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  239 (262)
                      +.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.     .||..+|+.++.+|++
T Consensus       292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~  366 (857)
T PLN03077        292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEK  366 (857)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHh
Confidence            66666666666665566666555555555666666666666666666666666665553     2455556666666666


Q ss_pred             cCChhHHHHHHHHHHHcCCCCC
Q 037499          240 VGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       240 ~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      .|++++|.++|++|.+.|+.||
T Consensus       367 ~g~~~~A~~lf~~M~~~g~~Pd  388 (857)
T PLN03077        367 NGLPDKALETYALMEQDNVSPD  388 (857)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCC
Confidence            6666666666666666666665

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.5e-39  Score=281.46  Aligned_cols=235  Identities=16%  Similarity=0.146  Sum_probs=201.5

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      +|+..+++.|+..|++.|+++.|.++|+.|.              .+|..+|+++|.+|++.|++++|+++|.+|.+. |
T Consensus       219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g  283 (857)
T PLN03077        219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP--------------RRDCISWNAMISGYFENGECLEGLELFFTMREL-S  283 (857)
T ss_pred             CcccchHhHHHHHHhcCCCHHHHHHHHhcCC--------------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence            4677788889999999999999999999983              247888999999999999999999999999886 7


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      +.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|..   +|..+|+++
T Consensus       284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~l  360 (857)
T PLN03077        284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAM  360 (857)
T ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHH
Confidence            88999999999999999999999999999999888889999999999999999999999999888864   788888888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      |.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+|+.|+.+|++.|+
T Consensus       361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~  439 (857)
T PLN03077        361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKC  439 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCC
Confidence            8888888888888888888888888888888888888888888888888888888776 888888888888888888888


Q ss_pred             hhHHHHHHHHHHHc
Q 037499          243 LSLALGFKEEMVRN  256 (262)
Q Consensus       243 ~~~a~~~~~~m~~~  256 (262)
                      +++|.++|++|.+.
T Consensus       440 ~~~A~~vf~~m~~~  453 (857)
T PLN03077        440 IDKALEVFHNIPEK  453 (857)
T ss_pred             HHHHHHHHHhCCCC
Confidence            87777777776543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=7.6e-22  Score=158.49  Aligned_cols=235  Identities=13%  Similarity=0.057  Sum_probs=123.7

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---   86 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---   86 (262)
                      ..++..+.+.|++++|..+|+.+..           ..+.+..++..++..+.+.|++++|++.++.+.+.....+.   
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  179 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVD-----------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI  179 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHc-----------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH
Confidence            3444444444555555555444422           12234445555555555555555555555555443111111   


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHG  165 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~  165 (262)
                      ...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+.+.|++++|.++|+++....+ ....+++.++.+
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~  258 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC  258 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence            1123344445555555555555555555443 33344555555556666666666666666554433 223445556666


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCC
Q 037499          166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA---VGE  242 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~  242 (262)
                      |.+.|++++|...++++.+.  .|+...+..++..+.+.|++++|..+++++.+.   .|+...+..++..+..   .|+
T Consensus       259 ~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~  333 (389)
T PRK11788        259 YQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGR  333 (389)
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCcc
Confidence            66666666666666666554  234444455666666666666666666666543   4666666655555443   345


Q ss_pred             hhHHHHHHHHHHHcCCCCC
Q 037499          243 LSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       243 ~~~a~~~~~~m~~~g~~pd  261 (262)
                      .+++..++++|.+.++.||
T Consensus       334 ~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        334 AKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             chhHHHHHHHHHHHHHhCC
Confidence            6666666666666666655

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=1.1e-21  Score=157.52  Aligned_cols=243  Identities=14%  Similarity=0.128  Sum_probs=199.5

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.+..++..++..+.+.|++++|..+++.+...+.       .........+..++..+.+.|+++.|+.+|+++.+. 
T Consensus        65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-  136 (389)
T PRK11788         65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-------LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-  136 (389)
T ss_pred             CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-
Confidence            455666788999999999999999999998855321       000112357888999999999999999999999874 


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC  157 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  157 (262)
                       -+.+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|...|+++.+..+.+..
T Consensus       137 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  215 (389)
T PRK11788        137 -GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR  215 (389)
T ss_pred             -CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH
Confidence             356678899999999999999999999999987652221    124566777888999999999999999887766777


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL  237 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  237 (262)
                      .+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.   .|+...+..+...+
T Consensus       216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~  292 (389)
T PRK11788        216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLL  292 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHH
Confidence            888899999999999999999999998643333567888999999999999999999999864   57777778889999


Q ss_pred             HhcCChhHHHHHHHHHHHc
Q 037499          238 CAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       238 ~~~g~~~~a~~~~~~m~~~  256 (262)
                      .+.|++++|..+++++.+.
T Consensus       293 ~~~g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        293 EEQEGPEAAQALLREQLRR  311 (389)
T ss_pred             HHhCCHHHHHHHHHHHHHh
Confidence            9999999999999998774

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.87  E-value=2.9e-19  Score=157.57  Aligned_cols=236  Identities=13%  Similarity=0.093  Sum_probs=177.4

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |.+...+..++..+.+.|++++|.++++.+..           ..+.+...|..++.++...|++++|+..|+++.+.. 
T Consensus       564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  631 (899)
T TIGR02917       564 PQEIEPALALAQYYLGKGQLKKALAILNEAAD-----------AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-  631 (899)
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            44455566677777777777777777777632           344567778888888888888888888888877642 


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                       +.+...+..+..++.+.|++++|.++|+++.+.. +.+..++..+...+...|++++|..+++.+....+.+...+..+
T Consensus       632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  709 (899)
T TIGR02917       632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE  709 (899)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence             4556667777788888888888888888877664 55667777888888888888888888888877777777778888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      ...+.+.|++++|...|+.+...+  |+..++..+..++.+.|++++|.+.++++.+.  .+.+...+..+...|...|+
T Consensus       710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~  785 (899)
T TIGR02917       710 GDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKD  785 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence            888888888888888888887754  44466667777788888888888888887763  34567777778888888888


Q ss_pred             hhHHHHHHHHHHHc
Q 037499          243 LSLALGFKEEMVRN  256 (262)
Q Consensus       243 ~~~a~~~~~~m~~~  256 (262)
                      +++|.++|+++.+.
T Consensus       786 ~~~A~~~~~~~~~~  799 (899)
T TIGR02917       786 YDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.86  E-value=3.6e-19  Score=156.91  Aligned_cols=235  Identities=17%  Similarity=0.100  Sum_probs=127.0

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |.++..+..++..+.+.|++++|...|+.+..           ..+.+..++..++..+...|++++|.++++.+.+.  
T Consensus       632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--  698 (899)
T TIGR02917       632 PDSALALLLLADAYAVMKNYAKAITSLKRALE-----------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--  698 (899)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence            44555666667777777777777777766632           22334555555666666666666666666655553  


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      .+.+...+..+...+...|++++|.+.|+++...+  |+..++..+..++.+.|++++|.+.++.+....+.+...+..+
T Consensus       699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l  776 (899)
T TIGR02917       699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL  776 (899)
T ss_pred             CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            23444455555555555555555555555555432  2234444444555555555555555555544444444455555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCC--------------------------------CCchHHHHHHHHHHHhhCCHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRL--------------------------------QPTLVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~--------------------------------~~~~~~~~~li~~~~~~g~~~~a  210 (262)
                      ...|.+.|++++|...|+++.+...                                +.+..++..+...+...|++++|
T Consensus       777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  856 (899)
T TIGR02917       777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA  856 (899)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            5555555555555555555444321                                11233444455555556666666


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      .++++++.+. + +.+..++..+..++.+.|+.++|.+++++|+
T Consensus       857 ~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       857 LPLLRKAVNI-A-PEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHhh-C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            6666666553 1 2255566666666666666666666666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=5.9e-17  Score=137.16  Aligned_cols=236  Identities=14%  Similarity=0.043  Sum_probs=117.5

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++..+..++..+.+.|++++|++.|+....           ..+.+...+..+...+...|++++|...++.+....
T Consensus       106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~-----------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~  174 (656)
T PRK15174        106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWL-----------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV  174 (656)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence            456666667777777777777777777777633           223355666666777777777777777666665432


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                        +.+...+..+ ..+...|++++|...++.+.+..-.++...+..+..++.+.|++++|+..+++.....+.+...+..
T Consensus       175 --P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~  251 (656)
T PRK15174        175 --PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS  251 (656)
T ss_pred             --CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence              2222222222 2244555555555555555443211222223333444445555555555555554444444444444


Q ss_pred             HHHHHHhcCChhH----HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499          162 LMHGCVVSRRLED----AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL  237 (262)
Q Consensus       162 l~~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  237 (262)
                      +...+...|++++    |...|++..+... .+...+..+...+.+.|++++|...+++..+.  .+.+...+..+..+|
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l  328 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            5555555555443    4444554444321 13334444444444455555555555444432  111233333444444


Q ss_pred             HhcCChhHHHHHHHHHH
Q 037499          238 CAVGELSLALGFKEEMV  254 (262)
Q Consensus       238 ~~~g~~~~a~~~~~~m~  254 (262)
                      .+.|++++|.+.++++.
T Consensus       329 ~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        329 RQVGQYTAASDEFVQLA  345 (656)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            44444444444444444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=4.5e-17  Score=137.86  Aligned_cols=236  Identities=12%  Similarity=0.002  Sum_probs=194.3

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      ....+..++..+...|++++|+..|+....           ..+.+...|..+...+...|++++|+..|++..+..  +
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p  396 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIE-----------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--S  396 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence            344577888889999999999999999844           333467788999999999999999999999998753  5


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      .+..++..+..++...|++++|++.|++..+.. +.+...+..+..++.+.|++++|+..|++.....+.+...++.+..
T Consensus       397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~  475 (615)
T TIGR00990       397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE  475 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            567889999999999999999999999999875 5667888889999999999999999999999887788899999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCchH------HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQPTLV------TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC  238 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  238 (262)
                      .+...|++++|...|++........+..      .++..+..+...|++++|.+++++..+.  .+.+...+..+...+.
T Consensus       476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~  553 (615)
T TIGR00990       476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLL  553 (615)
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence            9999999999999999988763321111      1222223344569999999999998763  2334557889999999


Q ss_pred             hcCChhHHHHHHHHHHHc
Q 037499          239 AVGELSLALGFKEEMVRN  256 (262)
Q Consensus       239 ~~g~~~~a~~~~~~m~~~  256 (262)
                      +.|++++|+..|++..+.
T Consensus       554 ~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       554 QQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HccCHHHHHHHHHHHHHH
Confidence            999999999999998653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.80  E-value=1.3e-16  Score=135.06  Aligned_cols=237  Identities=10%  Similarity=-0.040  Sum_probs=194.3

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++..+..++.++...|++++|...++.+...           .+.+...+..+. .+...|++++|+..++.+.+..
T Consensus       140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----------~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~  207 (656)
T PRK15174        140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----------VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF  207 (656)
T ss_pred             CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----------CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC
Confidence            5677778899999999999999999999877332           222444444443 4788999999999999987752


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCChh
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR----MTDLFQIMEKYVSPDAC  157 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~  157 (262)
                       -.++......+..++.+.|++++|+..|++..+.. +.+...+..+...+...|++++    |+..|++.....+.+..
T Consensus       208 -~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~  285 (656)
T PRK15174        208 -ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR  285 (656)
T ss_pred             -CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence             12334455566788899999999999999999875 6677888899999999999986    89999999998888889


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ-VFASLIKG  236 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~  236 (262)
                      .+..+...+.+.|++++|...+++..+... .+...+..+..++.+.|++++|...++++...   .|+.. .+..+..+
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~a  361 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence            999999999999999999999999998743 34567777889999999999999999999864   45543 34445678


Q ss_pred             HHhcCChhHHHHHHHHHHHc
Q 037499          237 LCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       237 ~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +...|+.++|...|++..+.
T Consensus       362 l~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        362 LLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHh
Confidence            89999999999999998774

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=2e-17  Score=131.67  Aligned_cols=239  Identities=13%  Similarity=0.093  Sum_probs=165.2

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.-+..|..|+..|...+.+++|+..|.+...           --+.....|..+...|..+|.++.|+..+++..+..
T Consensus       248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-----------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~  316 (966)
T KOG4626|consen  248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-----------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ  316 (966)
T ss_pred             CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-----------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence            344445555566666666666666665555422           112244555555556666666666666666666532


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                        +--+..|+.|..++-..|++.+|...|.+..... +....+.+.|...|.+.|.+++|..+|....+..+.-...++.
T Consensus       317 --P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN  393 (966)
T KOG4626|consen  317 --PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN  393 (966)
T ss_pred             --CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence              2235667777777777777777777777777654 4445667777777777888888888877777766656667788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCA  239 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  239 (262)
                      +...|-+.|++++|...|++...  +.|+ ...|+.+...|-..|+.+.|++.+.+...   +.|. ...++.|...|..
T Consensus       394 La~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kD  468 (966)
T KOG4626|consen  394 LASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKD  468 (966)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhc
Confidence            88888888888888888887776  4454 35777787888888888888888887773   4554 4567888888889


Q ss_pred             cCChhHHHHHHHHHHHcCCCCC
Q 037499          240 VGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       240 ~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      .|++.+|++-+++.++  ++||
T Consensus       469 sGni~~AI~sY~~aLk--lkPD  488 (966)
T KOG4626|consen  469 SGNIPEAIQSYRTALK--LKPD  488 (966)
T ss_pred             cCCcHHHHHHHHHHHc--cCCC
Confidence            9999999999988877  6776

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=1.8e-17  Score=127.10  Aligned_cols=234  Identities=14%  Similarity=0.121  Sum_probs=91.4

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |.++.-|..++......++++.|++.++.+...           .+.++..+..++.. ...+++++|.+++....++  
T Consensus        41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-----------~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--  106 (280)
T PF13429_consen   41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-----------DKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--  106 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc-----------cccccccccccccc-ccccccccccccccccccc--
Confidence            334444555555666666666666666666432           12244445555555 5667777777776665543  


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                       .+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++++++..+..|.|......
T Consensus       107 -~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~  185 (280)
T PF13429_consen  107 -DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA  185 (280)
T ss_dssp             ------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             -ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence             2445556666677777777777777777765422 23455666777777777777777777777777776666777777


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG  241 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  241 (262)
                      ++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+|++..+.  .+.|......+..++...|
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccc
Confidence            7777777777777777777766653 345556667777777777777777777777653  2336666667777777777


Q ss_pred             ChhHHHHHHHHHH
Q 037499          242 ELSLALGFKEEMV  254 (262)
Q Consensus       242 ~~~~a~~~~~~m~  254 (262)
                      +.++|.++..+..
T Consensus       263 ~~~~A~~~~~~~~  275 (280)
T PF13429_consen  263 RKDEALRLRRQAL  275 (280)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            7777777766654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.75  E-value=4.9e-15  Score=125.54  Aligned_cols=163  Identities=12%  Similarity=0.034  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      .+..+..++...|++++|+..|++..+.. +.....|..+..++...|++++|+..|+......+.+..+|..+...+..
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34445555556667777777777666543 33345666666677777777777777777766666666777777777777


Q ss_pred             cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499          169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  248 (262)
                      .|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.  .+.+...|..+..++...|++++|++
T Consensus       412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~  488 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIE  488 (615)
T ss_pred             cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHH
Confidence            777777777777777653 224555666666777777777777777777653  23345667777777777888888887


Q ss_pred             HHHHHHH
Q 037499          249 FKEEMVR  255 (262)
Q Consensus       249 ~~~~m~~  255 (262)
                      .|++..+
T Consensus       489 ~~~~Al~  495 (615)
T TIGR00990       489 KFDTAIE  495 (615)
T ss_pred             HHHHHHh
Confidence            7777665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.74  E-value=7.4e-16  Score=122.85  Aligned_cols=233  Identities=15%  Similarity=0.171  Sum_probs=200.7

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      --.+.|..|+..+-.+|+...|+..|++...           -.+.=...|..|...|...+.+++|+..+.......  
T Consensus       216 ~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-----------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--  282 (966)
T KOG4626|consen  216 CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--  282 (966)
T ss_pred             ceeeeehhcchHHhhcchHHHHHHHHHHhhc-----------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--
Confidence            3456789999999999999999999999844           333345688899999999999999999999988643  


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.....+..+...|...|+.+.|+..|++..+.. +.-..+|+.|..++-..|+..+|...|.+.....+.-....+.+.
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg  361 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG  361 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            4456788889999999999999999999998864 445688999999999999999999999999988887788899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA-QVFASLIKGLCAVG  241 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g  241 (262)
                      .+|...|.++.|.++|....+-  .|. ...++.|...|-++|++++|+..+++..   .+.|+. ..|+.+...|...|
T Consensus       362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhh
Confidence            9999999999999999998874  343 4578889999999999999999999988   568864 57889999999999


Q ss_pred             ChhHHHHHHHHHHH
Q 037499          242 ELSLALGFKEEMVR  255 (262)
Q Consensus       242 ~~~~a~~~~~~m~~  255 (262)
                      +.+.|.+.+.+.+.
T Consensus       437 ~v~~A~q~y~rAI~  450 (966)
T KOG4626|consen  437 DVSAAIQCYTRAIQ  450 (966)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999988876

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=2.3e-14  Score=124.91  Aligned_cols=234  Identities=9%  Similarity=-0.034  Sum_probs=182.6

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      ++..+..++.++.. +++++|+..|......            .|+......+...+...|++++|+..|+++...   +
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~------------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~  539 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR------------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---D  539 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---C
Confidence            55667888888876 8888999977776332            234444444555667899999999999988653   4


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      |+...+..+..++.+.|++++|...+++..+.. +.+...+..+.......|++++|+..+++..+..+ +...+..+..
T Consensus       540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~~~a~~~LA~  617 (987)
T PRK09782        540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-SANAYVARAT  617 (987)
T ss_pred             CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence            555556777888899999999999999998765 44444444444455566999999999999987655 5888999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS  244 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  244 (262)
                      ++.+.|++++|...+++..... +.+...+..+..++...|++++|+..+++..+.  .+-+...+..+..++...|+++
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999874 235667788888899999999999999999864  2346678888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCC
Q 037499          245 LALGFKEEMVRNKIEMD  261 (262)
Q Consensus       245 ~a~~~~~~m~~~g~~pd  261 (262)
                      +|+..+++..+  +.|+
T Consensus       695 eA~~~l~~Al~--l~P~  709 (987)
T PRK09782        695 ATQHYARLVID--DIDN  709 (987)
T ss_pred             HHHHHHHHHHh--cCCC
Confidence            99999999887  3454

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.70  E-value=1.2e-13  Score=102.92  Aligned_cols=201  Identities=12%  Similarity=0.047  Sum_probs=171.3

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      .....+..+...+...|++++|.+.+++..+.  .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~  105 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY  105 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            34678888999999999999999999999874  25567788889999999999999999999998875 5567788889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR  206 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  206 (262)
                      ...+...|++++|.+.+++......  .....+..+...+...|++++|...+++...... .+...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence            9999999999999999999987543  3456778889999999999999999999988642 346678888899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       207 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +++|...+++..+.  .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus       185 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       185 YKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999999875  344667777888889999999999999888765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.70  E-value=4.7e-14  Score=127.12  Aligned_cols=239  Identities=12%  Similarity=0.005  Sum_probs=179.9

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      +..++..+...|++++|++.|++...           ..+.+...+..+...+.+.|++++|+..++++.+..  +.+..
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~-----------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~  530 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLA-----------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPE  530 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHH
Confidence            34566778889999999999999844           344577788899999999999999999999998743  33444


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhc---------------------------------------CCCCChhhHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSF---------------------------------------NVQRTVKSFNTLL  129 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll  129 (262)
                      .+..+...+...++.++|+..++.+...                                       ..+.+...+..+.
T Consensus       531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La  610 (1157)
T PRK11447        531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA  610 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence            4443333444455555555544432110                                       1245556777888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      ..+.+.|++++|++.|++.....+.+...+..++..+...|++++|...++...+.. +.+..++..+..++...|++++
T Consensus       611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~e  689 (1157)
T PRK11447        611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAA  689 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHH
Confidence            899999999999999999999888889999999999999999999999999887652 2345566777888889999999


Q ss_pred             HHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCC
Q 037499          210 ALKLKEDMMRVYNVKP----DAQVFASLIKGLCAVGELSLALGFKEEMVR-NKIEMD  261 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~pd  261 (262)
                      |.++++++.....-.|    +...+..+...+...|+.++|++.|++... .|+.|+
T Consensus       690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~  746 (1157)
T PRK11447        690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT  746 (1157)
T ss_pred             HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence            9999999986422222    234666678889999999999999998753 456553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.68  E-value=7.3e-14  Score=104.02  Aligned_cols=198  Identities=13%  Similarity=0.039  Sum_probs=168.4

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      .+..++..+...|++++|.+.|+....           ..+.+...+..+...+...|++++|.+.+++..+..  +.+.
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~   99 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALE-----------HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNG   99 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH
Confidence            467788999999999999999998843           334467888999999999999999999999998753  5567


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ..+..+...+...|++++|.+.+++..+... +.....+..+..++...|++++|...+.+.....+.+...+..+...+
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            7888899999999999999999999986432 223456777888999999999999999999888777788899999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       180 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       180 YLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999999999887 344667777788888899999999999888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.68  E-value=7.6e-14  Score=125.78  Aligned_cols=238  Identities=8%  Similarity=-0.032  Sum_probs=169.2

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHH-------------------------
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDL-------------------------   56 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------   56 (262)
                      +|.++..+..++.++...|++++|++.|+.+...           .+.+...+..                         
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~  449 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR  449 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence            4566667788999999999999999999998542           1223333322                         


Q ss_pred             -----------------HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 037499           57 -----------------IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ  119 (262)
Q Consensus        57 -----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  119 (262)
                                       +...+...|++++|++.|++..+..  +-+...+..+...|.+.|++++|...++++.+.. +
T Consensus       450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P  526 (1157)
T PRK11447        450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P  526 (1157)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence                             3344556788889999998888743  4567778888888999999999999999887653 3


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------------------------cCCCChhHH
Q 037499          120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK----------------------------------------YVSPDACSY  159 (262)
Q Consensus       120 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------------------------------~~~~~~~~~  159 (262)
                      .+...+..+...+...++.++|+..++.+..                                        ..+.+...+
T Consensus       527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~  606 (1157)
T PRK11447        527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID  606 (1157)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH
Confidence            3444433333333444444444444333210                                        123555667


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA  239 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  239 (262)
                      ..+...+.+.|++++|+..|++..+.. +.+...+..++..+...|++++|.+.++.+.+.  -+.+..++..+..++..
T Consensus       607 ~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~  683 (1157)
T PRK11447        607 LTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAA  683 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHh
Confidence            778888889999999999999988864 336778888888999999999999999987642  22345566777788889


Q ss_pred             cCChhHHHHHHHHHHHc
Q 037499          240 VGELSLALGFKEEMVRN  256 (262)
Q Consensus       240 ~g~~~~a~~~~~~m~~~  256 (262)
                      .|++++|.++++++.+.
T Consensus       684 ~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        684 LGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             CCCHHHHHHHHHHHhhh
Confidence            99999999999988764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.68  E-value=1.4e-15  Score=116.71  Aligned_cols=202  Identities=19%  Similarity=0.209  Sum_probs=119.3

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      +.++..+..++.. ...+++++|.++++...+.            .++...+..++..+.+.++++++.++++.+.....
T Consensus        75 ~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~  141 (280)
T PF13429_consen   75 KANPQDYERLIQL-LQDGDPEEALKLAEKAYER------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA  141 (280)
T ss_dssp             --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred             ccccccccccccc-ccccccccccccccccccc------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence            4456667777777 7999999999999877433            24667788899999999999999999999887555


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      .+.+...|..+...+.+.|+.++|++.+++..+.. |.+......++..+...|+.+++.+++.......+.|+..+..+
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  220 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL  220 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            56788899999999999999999999999999875 55688899999999999999999999999988777788889999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ..+|...|+.++|...|++..+.. +.|+.+...+..++...|+.++|.++..++.+
T Consensus       221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred             HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            999999999999999999999863 34788889999999999999999999887754

>PRK12370 invasion protein regulator; Provisional

Probab=99.68  E-value=9.6e-14  Score=115.91  Aligned_cols=217  Identities=11%  Similarity=0.018  Sum_probs=167.4

Q ss_pred             CChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR---------AKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        20 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      +++++|++.|++..+           ..+.+...|..+..++..         .+++++|...+++..+..  +.+...+
T Consensus       275 ~~~~~A~~~~~~Al~-----------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~  341 (553)
T PRK12370        275 YSLQQALKLLTQCVN-----------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQAL  341 (553)
T ss_pred             HHHHHHHHHHHHHHh-----------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHH
Confidence            456899999999844           333456677766665542         245889999999999853  5677888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|+..+++..+..+.+...+..++..+...|
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            889999999999999999999999886 6667888999999999999999999999999988755555555555677789


Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA-QVFASLIKGLCAVGELSLALGF  249 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~  249 (262)
                      ++++|...++++.....+-+...+..+..++...|+.++|...+.++...   .|+. ...+.+...|...|  ++|...
T Consensus       421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~  495 (553)
T PRK12370        421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPT  495 (553)
T ss_pred             CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHH
Confidence            99999999999887632224555777778888999999999999998653   4543 34455555677777  477777


Q ss_pred             HHHHHH
Q 037499          250 KEEMVR  255 (262)
Q Consensus       250 ~~~m~~  255 (262)
                      ++.+.+
T Consensus       496 l~~ll~  501 (553)
T PRK12370        496 IREFLE  501 (553)
T ss_pred             HHHHHH
Confidence            777654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=6.2e-14  Score=103.67  Aligned_cols=231  Identities=15%  Similarity=0.124  Sum_probs=186.2

Q ss_pred             HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH--HHHHHH
Q 037499           16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE--IIFCNV   93 (262)
Q Consensus        16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l   93 (262)
                      +.-+.+.++|+++|-.|.           ...+.+..+.-+|.+.|.+.|.+++|+++.+.+.++++.+.+.  .....|
T Consensus        45 fLLs~Q~dKAvdlF~e~l-----------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL  113 (389)
T COG2956          45 FLLSNQPDKAVDLFLEML-----------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL  113 (389)
T ss_pred             HHhhcCcchHHHHHHHHH-----------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            334788999999999994           3555677888899999999999999999999999875544443  345668


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----hhHHHHHHHHHHh
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD----ACSYNILMHGCVV  168 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~  168 (262)
                      ..-|...|-+|.|+.+|..+.+.+ .--..+..-|+..|-...+|++|+++-+++.+.+. +.    ...|.-+...+..
T Consensus       114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence            888999999999999999999866 45567888899999999999999999998887766 22    3456777788888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499          169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  248 (262)
                      ..+.++|...+.+..+.+.+ .+..=-.+.+.....|+++.|++.++.+.++ ....-..+...|..+|...|+.++...
T Consensus       193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            89999999999999886432 2333334567788999999999999999876 333345678889999999999999999


Q ss_pred             HHHHHHHcCCCC
Q 037499          249 FKEEMVRNKIEM  260 (262)
Q Consensus       249 ~~~~m~~~g~~p  260 (262)
                      ++.++.+..-.+
T Consensus       271 fL~~~~~~~~g~  282 (389)
T COG2956         271 FLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHccCCc
Confidence            999988764433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=7.6e-14  Score=107.03  Aligned_cols=241  Identities=15%  Similarity=0.195  Sum_probs=196.2

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      .|..+.++..+|..+++-...++|.++++.....          ..+.+..+||.+|.+-+-...    .+++.+|... 
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~----------k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-  267 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAA----------KGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-  267 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh----------hheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-
Confidence            5788899999999999999999999999988654          557799999999976654433    7888899887 


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhc-----
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEH----ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKY-----  151 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~-----  151 (262)
                      .+.||..|+|+++++..+.|+++.    |.+++.+|++.|+.|+..+|..+|..+.+.++..+ |..++..+...     
T Consensus       268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~  347 (625)
T KOG4422|consen  268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT  347 (625)
T ss_pred             hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence            599999999999999999998765    56778899999999999999999999998877644 44444444332     


Q ss_pred             ----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCch---HHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          152 ----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       152 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                          .+.|...|...+..|.+..+.+-|.++..-+....    +.|+.   .-|..+....|+....+...+.|+.|...
T Consensus       348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~  427 (625)
T KOG4422|consen  348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS  427 (625)
T ss_pred             ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                12456677888888999999999999887766431    33332   33566777888999999999999999876


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499          221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI  258 (262)
Q Consensus       221 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  258 (262)
                       -+-|+..+...++++....|.++-.-+++.+++..|-
T Consensus       428 -~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh  464 (625)
T KOG4422|consen  428 -AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH  464 (625)
T ss_pred             -eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence             6778999999999999999999999999999888773

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.66  E-value=2.1e-13  Score=119.09  Aligned_cols=225  Identities=7%  Similarity=-0.103  Sum_probs=183.7

Q ss_pred             HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      .++..+...|++++|...|+.+...            +|+...+..+...+.+.|++++|.+.+++..+..  +.+...+
T Consensus       514 ~lA~al~~~Gr~eeAi~~~rka~~~------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~  579 (987)
T PRK09782        514 AVAYQAYQVEDYATALAAWQKISLH------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALY  579 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcc------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHH
Confidence            3345556899999999999987332            3344556778889999999999999999998752  4444444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ..+.....+.|++++|+..|++..+..  |+...|..+..++.+.|++++|+..+++.....+.+...++.+..++...|
T Consensus       580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G  657 (987)
T PRK09782        580 WWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG  657 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            444555556799999999999999864  678899999999999999999999999999999989999999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA-QVFASLIKGLCAVGELSLALGF  249 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~  249 (262)
                      ++++|+..+++..+... -+...+..+..++...|++++|+..+++..+.   .|+. .+.........+..+++.+.+-
T Consensus       658 ~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~  733 (987)
T PRK09782        658 DIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEE  733 (987)
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999998743 36678888999999999999999999999853   5654 4555556667777778888887


Q ss_pred             HHHHHH
Q 037499          250 KEEMVR  255 (262)
Q Consensus       250 ~~~m~~  255 (262)
                      +.+...
T Consensus       734 ~~r~~~  739 (987)
T PRK09782        734 VGRRWT  739 (987)
T ss_pred             HHHHhh
Confidence            776655

>PRK12370 invasion protein regulator; Provisional

Probab=99.66  E-value=9.3e-14  Score=116.01  Aligned_cols=236  Identities=14%  Similarity=-0.006  Sum_probs=174.1

Q ss_pred             CCCCCCCHHHHHHHHh---------hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499            2 NKAKPTSPFRLASLLR---------LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ   72 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   72 (262)
                      +|.++..+..++.++.         ..+++++|...+++...           -.+.+...|..+...+...|++++|+.
T Consensus       291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-----------ldP~~~~a~~~lg~~~~~~g~~~~A~~  359 (553)
T PRK12370        291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-----------LDHNNPQALGLLGLINTIHSEYIVGSL  359 (553)
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence            4555566666665544         33558999999999844           445588899999999999999999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499           73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV  152 (262)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  152 (262)
                      .|++..+..  +.+...+..+..++...|++++|+..+++..+.. +.+...+..++..+...|++++|+..+++.....
T Consensus       360 ~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        360 LFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence            999999853  5567788889999999999999999999999875 3334444445556777899999999999987765


Q ss_pred             C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 037499          153 S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA  231 (262)
Q Consensus       153 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~  231 (262)
                      + .++..+..+..++...|++++|...++++.... +.+....+.+...|...|  +.|...++.+.+.....|....+.
T Consensus       437 ~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~  513 (553)
T PRK12370        437 LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLL  513 (553)
T ss_pred             cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHH
Confidence            4 456667888899999999999999999976652 223344555555667767  478887877776544444444444


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          232 SLIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       232 ~l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      .++  |.-.|+-+.+..+ +++.+.|
T Consensus       514 ~~~--~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        514 PLV--LVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHH--HHHHhhhHHHHHH-HHhhccc
Confidence            444  5666676666665 7776654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=9.5e-15  Score=117.16  Aligned_cols=243  Identities=14%  Similarity=-0.005  Sum_probs=168.1

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCC----------------------CCC-CCCCCCCCHHHHHHHHHHHHh
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNT----------------------EAQ-PLKPFRYNLLHYDLIITKLGR   63 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------~~~-~~~~~~~~~~~~~~l~~~~~~   63 (262)
                      .....++.+|...+++++|.++|+.+++.....                      ..+ -+.-.+-.+.+|-++.++|+-
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            345678999999999999999999886542111                      000 011123456677777777777


Q ss_pred             cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD  143 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  143 (262)
                      +++.+.|++.|++..+-+  +-...+|+.+..-+.....+|.|...|+..+... +.+..+|-.+...|.+.++++.|+-
T Consensus       434 Qkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~  510 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEF  510 (638)
T ss_pred             hhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHH
Confidence            777888888777777632  2256777777777777777777777777776543 3344455556677778888888888


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 037499          144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV  223 (262)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  223 (262)
                      -|++..+..+.+.+....+...+.+.|+.++|++++++......+ |+..--.-+..+...+++++|+..++++.+  -+
T Consensus       511 ~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~v  587 (638)
T KOG1126|consen  511 HFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LV  587 (638)
T ss_pred             HHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hC
Confidence            888888777777777777777888888888888888887776544 333323344556667888888888888864  23


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       224 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +-+...|..+...|.+.|+.+.|+.-|--+.+
T Consensus       588 P~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  588 PQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            33455677777788888888888776666554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=4.8e-13  Score=99.05  Aligned_cols=210  Identities=16%  Similarity=0.185  Sum_probs=168.8

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|....+...|++.|.+.|..++|+.+-+.+..+++      . .+.--......|..-|...|-+|+|..+|..+.+..
T Consensus        65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd------l-T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~  137 (389)
T COG2956          65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD------L-TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG  137 (389)
T ss_pred             CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC------C-chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence            345556678999999999999999999999977643      1 222233456678889999999999999999998853


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC  157 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  157 (262)
                        ..-......|+..|-..++|++|+++-+++.+.+-.+..    ..|--+...+....+.+.|..++.+..+..+....
T Consensus       138 --efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR  215 (389)
T COG2956         138 --EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR  215 (389)
T ss_pred             --hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence              344566888999999999999999999999887644432    23555666666778899999999999888777777


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .--.+.+.+...|++++|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+.
T Consensus       216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            777888899999999999999999998866555677888889999999999999888887653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.64  E-value=1.1e-12  Score=105.28  Aligned_cols=221  Identities=15%  Similarity=0.056  Sum_probs=158.1

Q ss_pred             HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499           14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHY--DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC   91 (262)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   91 (262)
                      .+..+.|+++.|.+.|..+.+.            .|+....  ......+...|+++.|.+.++.+.+..  |-++....
T Consensus       126 ~aA~~~g~~~~A~~~l~~A~~~------------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~  191 (398)
T PRK10747        126 EAAQQRGDEARANQHLERAAEL------------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLR  191 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhc------------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence            3336777888888877777332            2232222  233567777777778877777777642  55566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCC-----------------------------------------CCChhhHHHHHH
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFNV-----------------------------------------QRTVKSFNTLLN  130 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------~~~~~~~~~ll~  130 (262)
                      .+...|.+.|++++|.+++..+.+.+.                                         +.+......+..
T Consensus       192 ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~  271 (398)
T PRK10747        192 LAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE  271 (398)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence            777777777777777777777665432                                         223344555667


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  210 (262)
                      .+...|+.++|.+++++..+ ..++...  .++.+....++.+++.+..+...+.. +-|...+..+.+.|.+.+++++|
T Consensus       272 ~l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A  347 (398)
T PRK10747        272 HLIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEA  347 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            77788888888888888876 3344422  23344445688888888888888763 33566778888999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      .+.|+...+   ..|+...|..+...+.+.|+.++|.+++++-..
T Consensus       348 ~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        348 SLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999985   479999999999999999999999999998754

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=3.2e-12  Score=103.16  Aligned_cols=230  Identities=13%  Similarity=0.028  Sum_probs=137.4

Q ss_pred             HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      ..+.+..+.|+++.|.+.++...+.          ...+...........+...|+++.|.+.++.+.+..  |-+..++
T Consensus       123 laA~aa~~~g~~~~A~~~l~~a~~~----------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l  190 (409)
T TIGR00540       123 KAAEAAQQRGDEARANQHLEEAAEL----------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVL  190 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh----------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence            3345555566666666666665221          000111223334555566666666666666666542  4445556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----------------------------------------CChhhHHHHH
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQ-----------------------------------------RTVKSFNTLL  129 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------------------~~~~~~~~ll  129 (262)
                      ..+...+.+.|++++|.+.+..+.+.+..                                         .+...+..+.
T Consensus       191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a  270 (409)
T TIGR00540       191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALA  270 (409)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence            66666666666666666666655544311                                         1444455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch--HHHHHHHHHHHhhC
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACS--YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL--VTFGTLIYGLCLEL  205 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g  205 (262)
                      ..+...|+.++|.+++++..+..+.+...  ...........++.+.+.+.++...+.. +-|.  ....++...+.+.|
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~  349 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHG  349 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcc
Confidence            66666777777777777776655533321  1111222233466667777776666542 2233  45567778888889


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       206 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      ++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus       350 ~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       350 EFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             cHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999988853322 447888888888888888999888988888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.60  E-value=2.4e-12  Score=103.32  Aligned_cols=221  Identities=12%  Similarity=0.030  Sum_probs=169.5

Q ss_pred             hhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH--HH
Q 037499           17 RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLH-YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC--NV   93 (262)
Q Consensus        17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l   93 (262)
                      .-.|++++|.+.+......            .+++.. |........+.|+++.|.+.+.++.+.   .|+.....  ..
T Consensus        95 ~~eGd~~~A~k~l~~~~~~------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~  159 (398)
T PRK10747         95 LAEGDYQQVEKLMTRNADH------------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITR  159 (398)
T ss_pred             HhCCCHHHHHHHHHHHHhc------------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHH
Confidence            3479999999999876332            112333 444455558999999999999999874   45554332  34


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------------------
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--------------------  153 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------------------  153 (262)
                      ...+...|++++|.+.++++.+.. |-+......+...|.+.|++++|.+++..+.+...                    
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~  238 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ  238 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999886 66788999999999999999999988888875433                    


Q ss_pred             ----------------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHH
Q 037499          154 ----------------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL  211 (262)
Q Consensus       154 ----------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  211 (262)
                                            .++.....+...+...|+.++|.+++++..+.  +|+....  ++.+....++.+++.
T Consensus       239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al  314 (398)
T PRK10747        239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLE  314 (398)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHH
Confidence                                  13334456677788999999999999998884  4454322  233444669999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       212 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      +..+...+.  .+-|...+..+...|.+.|++++|.+.|+...+.  .|+
T Consensus       315 ~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~  360 (398)
T PRK10747        315 KVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD  360 (398)
T ss_pred             HHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence            999999874  3446667888999999999999999999999874  454

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.60  E-value=1.4e-12  Score=112.94  Aligned_cols=233  Identities=15%  Similarity=0.077  Sum_probs=161.3

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      .+..++.++...|++++|.++|+....           ..+.+...+..++..+...|++++|+..++++.+.  .+.+.
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~-----------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~  117 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALS-----------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKA  117 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence            467888889999999999999998733           33446777778888889999999999999998875  35556


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH----------------------
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----------------------  145 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----------------------  145 (262)
                      . +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..++|++.+                      
T Consensus       118 ~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~  195 (765)
T PRK10049        118 N-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELV  195 (765)
T ss_pred             H-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            6 8888888889999999999999988865 445556666666666666655444333                      


Q ss_pred             ------------------------HHHHhcCC--CChh-HHH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CchHH
Q 037499          146 ------------------------QIMEKYVS--PDAC-SYN----ILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PTLVT  193 (262)
Q Consensus       146 ------------------------~~~~~~~~--~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~  193 (262)
                                              +.+.+..+  |+.. .+.    ..+.++...|++++|...|+.+.+.+.. |+. .
T Consensus       196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a  274 (765)
T PRK10049        196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-A  274 (765)
T ss_pred             HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-H
Confidence                                    33333211  2211 111    1123445678889999999998877532 332 2


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKP--DAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ...+..+|...|++++|+..|+++.+.....+  ....+..+..++...|++++|.++++++.+.
T Consensus       275 ~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~  339 (765)
T PRK10049        275 QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN  339 (765)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence            22246678889999999999998875311111  1345666677788899999999999888764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=9.1e-13  Score=101.96  Aligned_cols=228  Identities=13%  Similarity=0.120  Sum_probs=183.2

Q ss_pred             HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHH
Q 037499           14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCN   92 (262)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~   92 (262)
                      .++....+.+++++-.+.....          |++.+...-+....+.-...+++.|+.+|+++.+.+.... |..+|+.
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~----------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN  304 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSV----------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN  304 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc----------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence            4444555666776666666433          4555555555555666667788888888888877543332 2334443


Q ss_pred             -------------------------------HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037499           93 -------------------------------VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM  141 (262)
Q Consensus        93 -------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a  141 (262)
                                                     +.+-|+-.++.++|..+|++..+.+ +....+|+.+.+-|....+...|
T Consensus       305 ~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA  383 (559)
T KOG1155|consen  305 VLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA  383 (559)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence                                           3445566778999999999999987 66778999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 037499          142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY  221 (262)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  221 (262)
                      ++.++...+..+.|-..|--+..+|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|.+...- 
T Consensus       384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-  461 (559)
T KOG1155|consen  384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-  461 (559)
T ss_pred             HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-
Confidence            999999999999999999999999999999999999999999863 447889999999999999999999999999874 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       222 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                       -..+...+..|.+.|-+.++.++|...|++.++
T Consensus       462 -~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  462 -GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             -cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             234667899999999999999999999988765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=3.8e-13  Score=99.89  Aligned_cols=233  Identities=9%  Similarity=0.024  Sum_probs=199.3

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII   89 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   89 (262)
                      ..++..|.+.|-+.+|.+-|+.....            .|.+.||..|-+.|.+-.+...|+.++.+-.+.  ++-++..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~  292 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY  292 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh
Confidence            57889999999999999999987543            457889999999999999999999999999874  4556655


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      ..-..+.+...++.+.|.++|+...+.. +.++....++...|.-.++.+-|+..|+++...|..++..|+.+.-+|.-.
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya  371 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA  371 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence            6678888999999999999999998876 678888888888999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL  247 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  247 (262)
                      ++++-++.-|++....-..|+  ...|-.+-......|++..|.+.|+-...  .-.-+...++.|.-.-.+.|++++|.
T Consensus       372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGAR  449 (478)
T ss_pred             cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHH
Confidence            999999999999887644444  34666677778889999999999998875  33446778998888889999999999


Q ss_pred             HHHHHHHHcCCCCC
Q 037499          248 GFKEEMVRNKIEMD  261 (262)
Q Consensus       248 ~~~~~m~~~g~~pd  261 (262)
                      .++.....  +.||
T Consensus       450 sll~~A~s--~~P~  461 (478)
T KOG1129|consen  450 SLLNAAKS--VMPD  461 (478)
T ss_pred             HHHHHhhh--hCcc
Confidence            99998765  4443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.2e-13  Score=110.88  Aligned_cols=205  Identities=15%  Similarity=0.044  Sum_probs=177.3

Q ss_pred             CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499            1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      .+|.+|.+|-.+++.|..+++.+.|++.|++...           -.+....+|..+..-+.....+|.|...|+.....
T Consensus       416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            3688999999999999999999999999999843           34447889999999999999999999999988753


Q ss_pred             CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q 037499           81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN  160 (262)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  160 (262)
                      .  +-+-..|.-+...|.+.++++.|+-.|++..+.+ |.+.+....+...+.+.|+.|+|+.++++.....+.|+-.--
T Consensus       485 ~--~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  485 D--PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             C--chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence            2  2223355667888999999999999999999987 677788888889999999999999999999998888888877


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ..+..+...+++++|+..++++++. ++.+...|-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            8888888999999999999999996 3345667888889999999999999999988753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.57  E-value=1.2e-11  Score=106.32  Aligned_cols=230  Identities=9%  Similarity=-0.009  Sum_probs=125.0

Q ss_pred             HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      .++..+...|+.++|+..+++...           +.+........+...+...|++++|+++|+++.+..  +.++..+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~-----------p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l  139 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQS-----------SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLI  139 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhcc-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Confidence            555556666666666666666521           222233333333456666666666666666666642  4445555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-----
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG-----  165 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-----  165 (262)
                      ..++..+...++.++|++.++++.+.  .|+...+..++..+...++..+|++.++++.+..+.+...+..+..+     
T Consensus       140 ~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        140 SGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            55666666666666666666666654  34444443333333334444446666666655544333333333333     


Q ss_pred             --------------------------------------------------------------------------------
Q 037499          166 --------------------------------------------------------------------------------  165 (262)
Q Consensus       166 --------------------------------------------------------------------------------  165 (262)
                                                                                                      
T Consensus       218 ~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D  297 (822)
T PRK14574        218 IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID  297 (822)
T ss_pred             CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHH
Q 037499          166 ----CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN----VKPDAQVFASLIKGL  237 (262)
Q Consensus       166 ----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~  237 (262)
                          +...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+....+    ..++......|..+|
T Consensus       298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~  377 (822)
T PRK14574        298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL  377 (822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence                334455555555555555554433344555556666666666666666666654321    122333345666666


Q ss_pred             HhcCChhHHHHHHHHHHH
Q 037499          238 CAVGELSLALGFKEEMVR  255 (262)
Q Consensus       238 ~~~g~~~~a~~~~~~m~~  255 (262)
                      ...+++++|..+++++.+
T Consensus       378 ld~e~~~~A~~~l~~~~~  395 (822)
T PRK14574        378 NESEQLDKAYQFAVNYSE  395 (822)
T ss_pred             HhcccHHHHHHHHHHHHh
Confidence            677777777777776665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.56  E-value=8.4e-12  Score=108.17  Aligned_cols=232  Identities=8%  Similarity=-0.018  Sum_probs=175.8

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      ..-.+.+....|+.++|++++.....           ..+.+...+..+...+...|++++|.++|++..+..  +.+..
T Consensus        18 ~~d~~~ia~~~g~~~~A~~~~~~~~~-----------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~   84 (765)
T PRK10049         18 IADWLQIALWAGQDAEVITVYNRYRV-----------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDD   84 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH
Confidence            34556778889999999999999833           234466679999999999999999999999998753  56677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      .+..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+.+...+..+..++..
T Consensus        85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049         85 YQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            78889999999999999999999998874 55666 88899999999999999999999999888788777777777777


Q ss_pred             cCChhHHHHHHH----------------------------------------------HHHHC-CCCCchH-HHHH----
Q 037499          169 SRRLEDAWKVFD----------------------------------------------EMLKR-RLQPTLV-TFGT----  196 (262)
Q Consensus       169 ~g~~~~a~~~~~----------------------------------------------~m~~~-~~~~~~~-~~~~----  196 (262)
                      .+..++|++.++                                              .+.+. ...|+.. .+..    
T Consensus       163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d  242 (765)
T PRK10049        163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID  242 (765)
T ss_pred             CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence            777665554444                                              33322 1112211 1111    


Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       197 li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .+.++...|++++|+..|+++.+.....|+. ....+..+|...|++++|+.+|+++.+.
T Consensus       243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~  301 (765)
T PRK10049        243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH  301 (765)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence            1234567799999999999998752112432 2222567899999999999999998764

>PF13041 PPR_2: PPR repeat family

Probab=99.54  E-value=2.4e-14  Score=79.24  Aligned_cols=49  Identities=43%  Similarity=0.805  Sum_probs=28.3

Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499          154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC  202 (262)
Q Consensus       154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  202 (262)
                      ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.9e-11  Score=94.88  Aligned_cols=235  Identities=13%  Similarity=0.039  Sum_probs=187.3

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC-CCHHHHHHHH--------------------------
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR-YNLLHYDLII--------------------------   58 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--------------------------   58 (262)
                      +.-.+..+.+.-...|+++|+.+|+.+.++         .+.+ .|..+|..++                          
T Consensus       262 ~~i~~~~A~~~y~~rDfD~a~s~Feei~kn---------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ET  332 (559)
T KOG1155|consen  262 MYIKTQIAAASYNQRDFDQAESVFEEIRKN---------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPET  332 (559)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhc---------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccc
Confidence            333455667777899999999999999775         1333 2444544433                          


Q ss_pred             -----HHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499           59 -----TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML  133 (262)
Q Consensus        59 -----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  133 (262)
                           +-|+-.++.+.|...|+...+-.  +-....|+.+..-|...++...|.+-|+...+.+ |.|-..|-.|.++|.
T Consensus       333 CCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  333 CCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE  409 (559)
T ss_pred             eeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence                 33344477889999999998753  4556788999999999999999999999999987 889999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499          134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL  213 (262)
Q Consensus       134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  213 (262)
                      -.+...-|+-.|++.....|.|...|.++..+|.+.++.++|.+.|.+....|-. +...+..+...|-+.++.++|...
T Consensus       410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~  488 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQY  488 (559)
T ss_pred             HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987633 568899999999999999999999


Q ss_pred             HHHHHHhc---C-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          214 KEDMMRVY---N-VKP-DAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       214 ~~~~~~~~---~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      |++..+..   | +.| .......|...+.+.+++++|.......
T Consensus       489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            98876631   2 233 2223334556677778877777654444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.52  E-value=1.2e-10  Score=88.85  Aligned_cols=227  Identities=15%  Similarity=0.107  Sum_probs=183.6

Q ss_pred             cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 037499           19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG   98 (262)
Q Consensus        19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (262)
                      .|+|.+|.++...-.+.+           +.....|..-+.+..+.|+.+.+-+++.+..+.. -.++....-+......
T Consensus        97 eG~~~qAEkl~~rnae~~-----------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll  164 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG-----------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLL  164 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC-----------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHH
Confidence            799999999999875442           2345667777788888999999999999998752 2456666777788888


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------------
Q 037499           99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-------------------------  153 (262)
Q Consensus        99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------------  153 (262)
                      ..|+.+.|..-.+++.+.+ +.+.........+|.+.|++.....++..+.+.+.                         
T Consensus       165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999998887 77788889999999999999999999988877653                         


Q ss_pred             -----------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------------------
Q 037499          154 -----------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP---------------------------  189 (262)
Q Consensus       154 -----------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---------------------------  189 (262)
                                       .++..-.+++.-+.++|+.++|.++.++..+.+..|                           
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~  323 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ  323 (400)
T ss_pred             cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence                             233334566677778999999999988877654332                           


Q ss_pred             ---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          190 ---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       190 ---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                         ++..+.+|...|.+.+.|.+|...|+...   ...|+..+|..+..++.+.|+..+|.+..++..-.-.+|+
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence               45567788889999999999999999877   4589999999999999999999999999998775544443

>TIGR00540 hemY_coli hemY protein

Probab=99.52  E-value=7.6e-11  Score=95.21  Aligned_cols=228  Identities=14%  Similarity=0.046  Sum_probs=166.4

Q ss_pred             HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH--HHHHH
Q 037499           16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE--IIFCN   92 (262)
Q Consensus        16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~   92 (262)
                      ....|+++.|.+.+....+.            .|+ ...+-.....+.+.|+++.|.+.+.+..+..   |+.  .....
T Consensus        94 a~~~g~~~~A~~~l~~~~~~------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~  158 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADH------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDNILVEIA  158 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhc------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCchHHHHH
Confidence            34689999999999887332            233 3445556788888999999999999987642   443  34444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-------------------  153 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------  153 (262)
                      ....+...|+++.|.+.++.+.+.. |.+..++..+...+.+.|++++|.+.+..+.+.+.                   
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~  237 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD  237 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            5788889999999999999999886 66778899999999999999999998887775432                   


Q ss_pred             ------------------C-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH--H-HHHHHHHHhhCCH
Q 037499          154 ------------------P-----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT--F-GTLIYGLCLELRV  207 (262)
Q Consensus       154 ------------------~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~-~~li~~~~~~g~~  207 (262)
                                        |     +...+..++..+...|+.++|.+++++..+..  ||...  + ..........++.
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~  315 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN  315 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence                              1     44455566677778888999999999888863  33321  1 1111222345778


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       208 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      +.+.+.++...+...-.|+.....++...|.+.|++++|.+.|+........||
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~  369 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD  369 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence            888888888876522222225667888999999999999999995444334555

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13041 PPR_2: PPR repeat family

Probab=99.50  E-value=8.7e-14  Score=76.98  Aligned_cols=49  Identities=29%  Similarity=0.522  Sum_probs=27.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML  133 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  133 (262)
                      ||..+|+++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.50  E-value=5.1e-11  Score=84.51  Aligned_cols=196  Identities=9%  Similarity=-0.018  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA  131 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  131 (262)
                      .+...+.-.|.+.|+...|..-+++..+.+  +.+..+|..+...|.+.|..+.|.+.|++..+.. +-+-.+.|....-
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F  112 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence            345556667777777777777777777653  4455667777777777777777777777776654 4455667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      +|..|++++|...|+.......  .-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++-.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence            7777777777777777766544  33556777777777777777777777777765322 34455556666677777777


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      |..+++.....  ..++.......|+.-...|+.+.+-++=..+
T Consensus       192 Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         192 ARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            77777777553  3366666666666666777766665544433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.49  E-value=1.4e-10  Score=89.49  Aligned_cols=224  Identities=9%  Similarity=-0.027  Sum_probs=161.1

Q ss_pred             hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499           18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY   97 (262)
Q Consensus        18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (262)
                      ..+..+.++.-+.++.....       ....-....|..+...+.+.|++++|+..|++..+..  +.+...|+.+...+
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~-------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~  108 (296)
T PRK11189         38 PTLQQEVILARLNQILASRD-------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYL  108 (296)
T ss_pred             CchHHHHHHHHHHHHHcccc-------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            34566677777766643210       0111235668888899999999999999999999853  56788999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK  177 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  177 (262)
                      ...|++++|.+.|++..+.. +-+..+|..+..++...|++++|++.|+......+.+.. .......+...+++++|..
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~  186 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKE  186 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHH
Confidence            99999999999999999875 556788899999999999999999999999887664442 2222233456788999999


Q ss_pred             HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-----DAQVFASLIKGLCAVGELSLALGFKEE  252 (262)
Q Consensus       178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (262)
                      .|.+..... .|+...+ .+  .....|+...+ +.+..+.+.....+     ....|..+...+.+.|+.++|+..|++
T Consensus       187 ~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~  261 (296)
T PRK11189        187 NLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL  261 (296)
T ss_pred             HHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            997765432 3332222 22  23345666554 35555543211111     235788999999999999999999999


Q ss_pred             HHHcC
Q 037499          253 MVRNK  257 (262)
Q Consensus       253 m~~~g  257 (262)
                      ..+.+
T Consensus       262 Al~~~  266 (296)
T PRK11189        262 ALANN  266 (296)
T ss_pred             HHHhC
Confidence            98754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.48  E-value=3.1e-10  Score=80.64  Aligned_cols=169  Identities=11%  Similarity=-0.015  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ..+...|.-.|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++.....+.+..+.|.....+
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            3446667788889999999999999988876 556678888888999999999999999998888888888888888888


Q ss_pred             HhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499          167 VVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL  245 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  245 (262)
                      |..|.+++|...|++.... ...--..+|..+.-+..+.|+.+.|...|++..+.  .+-...+...+.....+.|+...
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence            9999999999999888875 22223457777877788889999999999888763  23345567777888888888888


Q ss_pred             HHHHHHHHHHcCC
Q 037499          246 ALGFKEEMVRNKI  258 (262)
Q Consensus       246 a~~~~~~m~~~g~  258 (262)
                      |..++++....|.
T Consensus       192 Ar~~~~~~~~~~~  204 (250)
T COG3063         192 ARLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHHhccc
Confidence            8888888766543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.48  E-value=1.4e-11  Score=99.46  Aligned_cols=243  Identities=13%  Similarity=0.085  Sum_probs=177.9

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP-FRYNLL-HYDLIITKLGRAKMFDEVQQILHQLKHDT---   81 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---   81 (262)
                      .+...|...|..+|+++.|..++++..+.-..     ..| ..|.+. ..+.+...|...+++++|..+|+++....   
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k-----~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEK-----TSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----ccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            44567899999999999999999987543100     011 123333 33447778899999999999999887531   


Q ss_pred             -C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----C-CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           82 -R--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-----N-VQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        82 -~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                       |  .+--..+++.|..+|.+.|++++|..++++..+.     | ..|.+ ..++.+...+...+++++|..+++...+.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence             1  1223557888899999999999999888876431     1 12222 34667778889999999999999866432


Q ss_pred             -----CCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC--CC-chHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499          152 -----VSP---DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RL--QP-TLVTFGTLIYGLCLELRVDEALKLKED  216 (262)
Q Consensus       152 -----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  216 (262)
                           +..   -..+++.+...|.+.|++++|.++++...+.    +-  .+ ....++.+...|.+.+++++|.++|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence                 222   2468999999999999999999999998753    11  12 245677888899999999999999887


Q ss_pred             HH---HhcCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          217 MM---RVYNV-KPD-AQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       217 ~~---~~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      ..   +..|. .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            43   22232 233 4579999999999999999999988875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.7e-11  Score=96.04  Aligned_cols=220  Identities=14%  Similarity=0.037  Sum_probs=174.6

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      .|.++.+|..++.-|.-.|.+.+|.+.|......           .+.=...|-.....|+-.+..+.|+..+....+- 
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-----------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-  375 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-----------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-  375 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc-----------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-
Confidence            5888999999999999999999999999887332           2223457888999999999999999999887763 


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------C
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-------P  154 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~  154 (262)
                       ++-...-+--+..-|.+.++.+.|.+.|.+..... |-|+...+-+.-.....+.+.+|..+|+.......       .
T Consensus       376 -~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~  453 (611)
T KOG1173|consen  376 -MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF  453 (611)
T ss_pred             -ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence             22222223334556888999999999999988765 66778888888888888999999999987763221       2


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499          155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI  234 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  234 (262)
                      -..+++.+..+|.+.+.+++|+..+++..... +-|..++.++.-.|...|+++.|++.|.+..   .+.|+-.+...++
T Consensus       454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELL  529 (611)
T ss_pred             hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHH
Confidence            34568899999999999999999999998873 4588899999999999999999999999887   6789887777777


Q ss_pred             HHHHh
Q 037499          235 KGLCA  239 (262)
Q Consensus       235 ~~~~~  239 (262)
                      ..+..
T Consensus       530 ~~aie  534 (611)
T KOG1173|consen  530 KLAIE  534 (611)
T ss_pred             HHHHH
Confidence            65543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=2.1e-11  Score=94.76  Aligned_cols=210  Identities=13%  Similarity=0.096  Sum_probs=172.9

Q ss_pred             HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499           15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI   94 (262)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   94 (262)
                      .....|++++|.+.|+....+           ...-+.....+.-.+-..|++++|+..|-.+..-  +..+..+...+.
T Consensus       499 ~~f~ngd~dka~~~ykeal~n-----------dasc~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qia  565 (840)
T KOG2003|consen  499 IAFANGDLDKAAEFYKEALNN-----------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIA  565 (840)
T ss_pred             eeeecCcHHHHHHHHHHHHcC-----------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHH
Confidence            344579999999999998543           2222333334455678889999999999988763  456788888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED  174 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  174 (262)
                      +.|....+..+|++++.+.... ++.|+.+.+.|...|-+.|+-..|...+-.--.-.+-+..+..-+...|....-+++
T Consensus       566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek  644 (840)
T KOG2003|consen  566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK  644 (840)
T ss_pred             HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999888765 467788999999999999999999998776665566788888889999999999999


Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHHH-HhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          175 AWKVFDEMLKRRLQPTLVTFGTLIYGL-CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      +...|++..-  +.|+..-|..++..| .+.|++..|..+++...+  .++-|......|++.+...|.
T Consensus       645 ai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  645 AINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence            9999998766  689999999888665 467999999999999976  677789999999999888775

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.46  E-value=7e-11  Score=91.15  Aligned_cols=205  Identities=9%  Similarity=-0.097  Sum_probs=148.9

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE   86 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   86 (262)
                      ..|..++..+.+.|+.++|...|++...           ..+.+...|+.+...+...|+++.|+..|++..+..  +-+
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~-----------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~  131 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALA-----------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTY  131 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence            3478888999999999999999999844           445578999999999999999999999999999743  445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ..++..+..++...|++++|++.|++..+..  |+..........+...++.++|...|.+......++...+   ....
T Consensus       132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~  206 (296)
T PRK11189        132 NYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVE  206 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHH
Confidence            7788889999999999999999999998864  4332222223334567889999999976554333332222   2333


Q ss_pred             HhcCChhHHHHHHHHHHHC---CC--C-CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEMLKR---RL--Q-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS  232 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~---~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~  232 (262)
                      ...|+...+ ..+..+.+.   .+  . .....|..+...+.+.|++++|+..|++..+.  .+||..-+..
T Consensus       207 ~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~--~~~~~~e~~~  275 (296)
T PRK11189        207 FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN--NVYNFVEHRY  275 (296)
T ss_pred             HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCchHHHHHH
Confidence            345666554 355555432   11  1 12357888899999999999999999999863  3456554444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.43  E-value=5.6e-10  Score=96.16  Aligned_cols=168  Identities=10%  Similarity=0.033  Sum_probs=128.7

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-LHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      |..+.+...-+....+.|+++.|++.|++..+.           .+.+. ..+ .++..+...|+.++|+..+++.... 
T Consensus        31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~-----------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-   97 (822)
T PRK14574         31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKA-----------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-   97 (822)
T ss_pred             ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-
Confidence            455556667777888999999999999999543           22232 233 7888889999999999999999832 


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                       -+........+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++....+ +...+..
T Consensus        98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~  174 (822)
T PRK14574         98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMT  174 (822)
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHH
Confidence             24445555556778999999999999999999876 56677888888999999999999999999987644 3444444


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCC
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~  186 (262)
                      ++..+...++..+|++.++++.+..
T Consensus       175 layL~~~~~~~~~AL~~~ekll~~~  199 (822)
T PRK14574        175 LSYLNRATDRNYDALQASSEAVRLA  199 (822)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhC
Confidence            4445545666666999999888763

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=2.2e-10  Score=88.39  Aligned_cols=208  Identities=13%  Similarity=0.195  Sum_probs=162.6

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      -+..+|..+|.++++-...++|.+++++..+. ..+.+..+||.+|.+-.-    ....+++.+|......||..|+|++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence            36789999999999999999999999999987 468889999999876432    2337889999999999999999999


Q ss_pred             HHHHHhcCCHHH----HHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhH-HHHHHHHHHHC--C--CC---C-chHHH
Q 037499          129 LNAMLTCGKIDR----MTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLED-AWKVFDEMLKR--R--LQ---P-TLVTF  194 (262)
Q Consensus       129 l~~~~~~g~~~~----a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~--~--~~---~-~~~~~  194 (262)
                      +.+..+.|+++.    |++++.+|++.|. |...+|..+|..+++.++..+ +..++.++...  |  .+   | |...|
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            999999998765    4667788999999 999999999999999998865 44445554432  2  22   2 44567


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          195 GTLIYGLCLELRVDEALKLKEDMMRVYN---VKPD---AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       195 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      ...+..|.+..+.+.|.++-.-+....+   +.|+   ..-|..+....++....+....+|+.|+-+-+-|+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~  432 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH  432 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence            7788889999999999988766643211   2233   23466777788888889999999999877655554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.7e-10  Score=89.81  Aligned_cols=242  Identities=10%  Similarity=0.004  Sum_probs=163.5

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|+++..+-.=|..+...|+..+-..+=.++           ....+..+.+|.++.--|.-.|+..+|.+.|.+...-+
T Consensus       274 dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~L-----------V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD  342 (611)
T KOG1173|consen  274 DPFHLPCLPLHIACLYELGKSNKLFLLSHKL-----------VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD  342 (611)
T ss_pred             CCCCcchHHHHHHHHHHhcccchHHHHHHHH-----------HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence            3444444444444555566655555555555           22445566666666666666666677776666665432


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                        +.-...|-.....|+-.+..++|...|...-+.= +-..--+.-+.--|.+.+.++.|.+.|.+.....|.|+...+-
T Consensus       343 --~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E  419 (611)
T KOG1173|consen  343 --PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE  419 (611)
T ss_pred             --ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence              1223456666666666666666666665554320 0000111222335667778888888888888887888888888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC--CC---C-CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKR--RL---Q-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~--~~---~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      +.-.....+.+.+|...|+.....  .+   . .-..+++.|..+|.+.+.+++|+..+++....  .+-+..++.++.-
T Consensus       420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~  497 (611)
T KOG1173|consen  420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGY  497 (611)
T ss_pred             hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHH
Confidence            888888899999999999887732  01   1 12456888999999999999999999999863  4558889999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          236 GLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       236 ~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      .|...|+++.|.+.|.+.+-  +.||
T Consensus       498 iy~llgnld~Aid~fhKaL~--l~p~  521 (611)
T KOG1173|consen  498 IYHLLGNLDKAIDHFHKALA--LKPD  521 (611)
T ss_pred             HHHHhcChHHHHHHHHHHHh--cCCc
Confidence            99999999999999998765  5554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.3e-10  Score=90.82  Aligned_cols=222  Identities=13%  Similarity=0.089  Sum_probs=176.2

Q ss_pred             HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499           15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI   94 (262)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   94 (262)
                      .+.-.|+.-.|..-|+....           -.+.+...|--+...|....+.++....|.....-+  +-++.+|..-.
T Consensus       335 F~fL~g~~~~a~~d~~~~I~-----------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRg  401 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIK-----------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRG  401 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHh-----------cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHH
Confidence            34457788888888887743           233344447788889999999999999999998754  55666788778


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED  174 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  174 (262)
                      ..+.-.+++++|..-|++..... +-+...|--+..+..+.+++++++..|++.++..|.-+.+|+.....+...+++++
T Consensus       402 Qm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~  480 (606)
T KOG0547|consen  402 QMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK  480 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH
Confidence            88888899999999999999876 55677777777788889999999999999999988888999999999999999999


Q ss_pred             HHHHHHHHHHCCCC-------CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHH
Q 037499          175 AWKVFDEMLKRRLQ-------PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLA  246 (262)
Q Consensus       175 a~~~~~~m~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a  246 (262)
                      |.+.|+..++....       +.+.+-..++..-. .+++..|++++.+..+   +.| ....|..|...-.+.|+.++|
T Consensus       481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eA  556 (606)
T KOG0547|consen  481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEA  556 (606)
T ss_pred             HHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHH
Confidence            99999998875322       11222223332222 3899999999999984   355 456899999999999999999


Q ss_pred             HHHHHHHH
Q 037499          247 LGFKEEMV  254 (262)
Q Consensus       247 ~~~~~~m~  254 (262)
                      +++|++..
T Consensus       557 ielFEksa  564 (606)
T KOG0547|consen  557 IELFEKSA  564 (606)
T ss_pred             HHHHHHHH
Confidence            99999864

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=7.3e-11  Score=88.02  Aligned_cols=201  Identities=15%  Similarity=0.095  Sum_probs=171.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      |..--+.+.++|.+.|.+.+|.+.|+.-.+.   .|-+.||..|-++|.+.++++.|+.+|.+-.+.- +-++....-+.
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~A  297 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQA  297 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhH
Confidence            4445577899999999999999999999875   5788899999999999999999999999988763 45555556677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      +.+-..++.++|.++|+...+..+.+......+...|.-.++++-|++.++++.+.|+. ++..|..+.-+|...+++|-
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence            88889999999999999999988888888889999999999999999999999999976 78888888888999999999


Q ss_pred             HHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          210 ALKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ++.-|++.... .-.|+  ..+|..+-...+..|++..|.+.|+-....
T Consensus       377 ~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~  424 (478)
T KOG1129|consen  377 VLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS  424 (478)
T ss_pred             hHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence            99999998775 44454  456878887888889998888888766543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.35  E-value=2e-09  Score=90.01  Aligned_cols=61  Identities=23%  Similarity=0.226  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      |.-+..+|...|++.+|+.+|..+... ...-+...|..+..+|...|..++|.+.|+..+.
T Consensus       417 ~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  417 YLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            344455555666666666666666543 2222345566666666666666666666666554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.35  E-value=1.1e-09  Score=91.39  Aligned_cols=239  Identities=14%  Similarity=0.056  Sum_probs=163.8

Q ss_pred             CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499            1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      |+|.+..-|..+.....+.|.+++|.-.|.+..           ...+++...+.--+..|-+.|+...|+..|.++.+.
T Consensus       202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI-----------~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~  270 (895)
T KOG2076|consen  202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAI-----------QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL  270 (895)
T ss_pred             cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH-----------hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence            456666666666666667777777777776662           234445555555666666777777777777777664


Q ss_pred             CCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 037499           81 TRVVPE-----EIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---  151 (262)
Q Consensus        81 ~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---  151 (262)
                      .  +|.     .......++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+...   
T Consensus       271 ~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e  348 (895)
T KOG2076|consen  271 D--PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE  348 (895)
T ss_pred             C--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence            2  222     112223445555666667777776665542 11334456677777777777777777666555440   


Q ss_pred             ----------------------------------------------------------C--C-CChhHHHHHHHHHHhcC
Q 037499          152 ----------------------------------------------------------V--S-PDACSYNILMHGCVVSR  170 (262)
Q Consensus       152 ----------------------------------------------------------~--~-~~~~~~~~l~~~~~~~g  170 (262)
                                                                                .  + .+...|.-+..++...|
T Consensus       349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~  428 (895)
T KOG2076|consen  349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG  428 (895)
T ss_pred             CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence                                                                      0  1 23445567788888999


Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK  250 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  250 (262)
                      ++..|..+|..+.....--+...|..+.++|...|.+++|.+.|+.+...  .+-+...--+|...+.+.|+.++|.+.+
T Consensus       429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL  506 (895)
T KOG2076|consen  429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETL  506 (895)
T ss_pred             cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence            99999999999998755556789999999999999999999999999863  2334556667778899999999999999


Q ss_pred             HHHH
Q 037499          251 EEMV  254 (262)
Q Consensus       251 ~~m~  254 (262)
                      ..+.
T Consensus       507 ~~~~  510 (895)
T KOG2076|consen  507 EQII  510 (895)
T ss_pred             hccc
Confidence            8865

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.35  E-value=1.5e-10  Score=97.16  Aligned_cols=173  Identities=13%  Similarity=0.084  Sum_probs=91.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 037499           46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR------------ARLLEHALQVFDEM  113 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~  113 (262)
                      ....++..+..+...+.+...+..|.+-|..+.+.....+|..+...|.+.|.+            .+..++|++.|.+.
T Consensus       559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv  638 (1018)
T KOG2002|consen  559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV  638 (1018)
T ss_pred             cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555444444432223444444444444432            12345555555555


Q ss_pred             hhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchH
Q 037499          114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLV  192 (262)
Q Consensus       114 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~  192 (262)
                      ++.. |-|..+-|-+.-+++..|++.+|..+|.++.+.......+|..+.++|...|++..|+++|+...+. ....+..
T Consensus       639 L~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~  717 (1018)
T KOG2002|consen  639 LRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE  717 (1018)
T ss_pred             HhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence            5544 4455555555555666666666666666665554445555666666666666666666666554443 3333455


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          193 TFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       193 ~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      +...|.+++.+.|++.+|.+.+.....
T Consensus       718 vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  718 VLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            555555666666666666655555543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.35  E-value=6.8e-10  Score=89.93  Aligned_cols=235  Identities=9%  Similarity=-0.018  Sum_probs=156.0

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |++...|..-+.......++++|..+|.+...            ..++...|..-+....-.++.++|++++++..+.  
T Consensus       615 pnseeiwlaavKle~en~e~eraR~llakar~------------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--  680 (913)
T KOG0495|consen  615 PNSEEIWLAAVKLEFENDELERARDLLAKARS------------ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--  680 (913)
T ss_pred             CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc------------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--
Confidence            45555566666667777777777777777633            2346666666666666677777777777777763  


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      ++.-...|..+.+.+.+.++++.|.+.|..-.+. ++..+..|-.+...--+.|..-+|..+++..+...+.+...|...
T Consensus       681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~  759 (913)
T KOG0495|consen  681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES  759 (913)
T ss_pred             CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence            3445566777777777777777777777665544 355666777777777777777888888887777777777888888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCC-----------------------------CCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRR-----------------------------LQPTLVTFGTLIYGLCLELRVDEALKL  213 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~  213 (262)
                      |.+-.+.|+.+.|..++.+..+.-                             +.-|+...-.+...|....+++.|.+.
T Consensus       760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W  839 (913)
T KOG0495|consen  760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW  839 (913)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887777776665431                             112344444555556666677777777


Q ss_pred             HHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          214 KEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       214 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      |.+..+.   .| +-.+|..+...+.+.|.-+.-.+++.....
T Consensus       840 f~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  840 FERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            7776642   33 334666666666777766666666665544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.32  E-value=3.2e-10  Score=86.51  Aligned_cols=223  Identities=15%  Similarity=0.109  Sum_probs=148.2

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII   89 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   89 (262)
                      .-+.+++...|+++.++.-...-             . .|.......+...+...++-+.++.-+++.........+...
T Consensus        39 ~~~~Rs~iAlg~~~~vl~ei~~~-------------~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~  104 (290)
T PF04733_consen   39 FYQYRSYIALGQYDSVLSEIKKS-------------S-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIV  104 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHS-TT-------------S-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH
T ss_pred             HHHHHHHHHcCChhHHHHHhccC-------------C-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHH
Confidence            35667777888888766555443             2 455556555555554445556666666555443212234444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh--HHHHHHHHHH
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC--SYNILMHGCV  167 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~  167 (262)
                      .......+...|++++|+++++..      .+.......+.+|.+.++++.|.+.++.|.+....++.  ...+++..+.
T Consensus       105 ~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~  178 (290)
T PF04733_consen  105 QLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT  178 (290)
T ss_dssp             HHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            444456677789999999888643      35566777889999999999999999999876432222  2233333333


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh-hHH
Q 037499          168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL-SLA  246 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a  246 (262)
                      -.+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....  -+-+..+...++-+....|+. +.+
T Consensus       179 g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  179 GGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             TTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             CchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHH
Confidence            345799999999998765 5678889999999999999999999999987653  233566777788777888887 567


Q ss_pred             HHHHHHHHH
Q 037499          247 LGFKEEMVR  255 (262)
Q Consensus       247 ~~~~~~m~~  255 (262)
                      .+++.++..
T Consensus       256 ~~~l~qL~~  264 (290)
T PF04733_consen  256 ERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHCHH
T ss_pred             HHHHHHHHH
Confidence            778887765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.31  E-value=3.4e-10  Score=95.11  Aligned_cols=232  Identities=13%  Similarity=0.063  Sum_probs=187.2

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII   89 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   89 (262)
                      ..++..+-..++++.|.+.|..+..           -.+--+..|--++......+...+|...++....-.  ..++..
T Consensus       500 YNlarl~E~l~~~~~A~e~Yk~Ilk-----------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~a  566 (1018)
T KOG2002|consen  500 YNLARLLEELHDTEVAEEMYKSILK-----------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNA  566 (1018)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHH-----------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHH
Confidence            4567777788999999999999843           334455566666655556688999999999998854  555666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCh
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLT------------CGKIDRMTDLFQIMEKYVSPDA  156 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~  156 (262)
                      ++.+...+.+...+..|.+-|....+.- ..+|..+.-.|.+.|.+            .+..++|+.+|.++....+.|.
T Consensus       567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~  646 (1018)
T KOG2002|consen  567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM  646 (1018)
T ss_pred             HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            7777878888899999999887776532 13455555566665543            3467899999999999988898


Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499          157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG  236 (262)
Q Consensus       157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  236 (262)
                      ..-|-+.-.++..|++..|..+|.+.++... ....+|..+..+|...|++..|+++|+...+.+.-.-+..+...|.++
T Consensus       647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara  725 (1018)
T KOG2002|consen  647 YAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA  725 (1018)
T ss_pred             hhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            8889999999999999999999999998743 355688889999999999999999999999987767788899999999


Q ss_pred             HHhcCChhHHHHHHHHHHH
Q 037499          237 LCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       237 ~~~~g~~~~a~~~~~~m~~  255 (262)
                      +.+.|.+.+|.+.+...+.
T Consensus       726 ~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  726 WYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHhhhHHHHHHHHHHHHH
Confidence            9999999999998877665

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.28  E-value=4e-10  Score=93.95  Aligned_cols=228  Identities=13%  Similarity=0.061  Sum_probs=108.1

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      |+..|+.++|.-|+..|+.+.|- +|..|+..          ..+.+...++.++....+.++.+.+.            
T Consensus        23 PnRvtyqsLiarYc~~gdieaat-if~fm~~k----------sLpv~e~vf~~lv~sh~~And~Enpk------------   79 (1088)
T KOG4318|consen   23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK----------SLPVREGVFRGLVASHKEANDAENPK------------   79 (1088)
T ss_pred             CchhhHHHHHHHHcccCCCcccc-chhhhhcc----------cccccchhHHHHHhcccccccccCCC------------
Confidence            55588888888899888888887 77777543          33334455555555555555443332            


Q ss_pred             CccHHHHHHHHHHHHhcCCHHH---HHHHHHHHh----hcCCCC--------------ChhhHHHHHHHHHhcCCHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEH---ALQVFDEMS----SFNVQR--------------TVKSFNTLLNAMLTCGKIDRMT  142 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~--------------~~~~~~~ll~~~~~~g~~~~a~  142 (262)
                      .|.+.+|.+|..+|...||...   +.+.+..+.    ..|+-.              ....-.+.+....-.|.++.++
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            3555566666666666665432   222111111    111100              0000111222222233344444


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 037499          143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN  222 (262)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  222 (262)
                      +++..+.......+...  +++-+..  ......++....+...-.|++.+|..++.+-...|+.+.|..++.+|.+. |
T Consensus       160 kll~~~Pvsa~~~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-g  234 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNAPFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-G  234 (1088)
T ss_pred             HHHhhCCcccccchHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-C
Confidence            44333322111111111  1221111  11222333332222211356666666666666666666666666666554 6


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC
Q 037499          223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA  262 (262)
Q Consensus       223 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd~  262 (262)
                      ++.+..-|..|+-+   .++...+..+++-|.+.||.|++
T Consensus       235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~s  271 (1088)
T KOG4318|consen  235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGS  271 (1088)
T ss_pred             CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCc
Confidence            65555555555532   55555566666666666666653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=5.8e-09  Score=83.36  Aligned_cols=229  Identities=15%  Similarity=0.084  Sum_probs=168.1

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      .+..+.-+..+.+.|++.+|.-.|+...           +..+-+...|..|.......++-..|+..+++..+-+  +-
T Consensus       285 ~pdPf~eG~~lm~nG~L~~A~LafEAAV-----------kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~  351 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKNGDLSEAALAFEAAV-----------KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PT  351 (579)
T ss_pred             CCChHHHHHHHHhcCCchHHHHHHHHHH-----------hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--Cc
Confidence            3445677888899999999999999983           3556689999999999999999999999999999853  55


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------------------------------------cCCCCChh
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSS------------------------------------------FNVQRTVK  123 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------------------~~~~~~~~  123 (262)
                      +....-.|.-.|...|.-..|++.++.-+.                                          .+..+|..
T Consensus       352 NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd  431 (579)
T KOG1125|consen  352 NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD  431 (579)
T ss_pred             cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence            677777888778777776677766655432                                          12224556


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      +...|.-.|.-.|++++|...|+......|.|...||.+...++...+.++|+..|++.++....--..-||.-| .|..
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI-S~mN  510 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI-SCMN  510 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh-hhhh
Confidence            667777777778888888888888888888888888888888888888888888888888853222233455444 6788


Q ss_pred             hCCHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499          204 ELRVDEALKLKEDMMRVY--------NVKPDAQVFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       204 ~g~~~~a~~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~a~~  248 (262)
                      .|.+++|.+.|-......        ...++...|.+|=.++.-.++.|.+.+
T Consensus       511 lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  511 LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            888888888776654321        111234567766666666666664443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.27  E-value=2.3e-08  Score=81.95  Aligned_cols=227  Identities=16%  Similarity=0.120  Sum_probs=134.6

Q ss_pred             HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499           12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC   91 (262)
Q Consensus        12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   91 (262)
                      ...++...|++++|++.++.-..           .+.............+.+.|+.++|..+|..+.++.  |.+..-|.
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~-----------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~   76 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEK-----------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYR   76 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhh-----------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence            34667889999999999987632           334456667778889999999999999999999863  33444444


Q ss_pred             HHHHHHHhc-----CCHHHHHHHHHHHhh----------------------------------cCCCCChhhHHHHHHHH
Q 037499           92 NVISFYGRA-----RLLEHALQVFDEMSS----------------------------------FNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        92 ~l~~~~~~~-----~~~~~a~~~~~~~~~----------------------------------~~~~~~~~~~~~ll~~~  132 (262)
                      .+..+.+-.     .+.+...++|+++..                                  .|+|   .+|+.+-..|
T Consensus        77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly  153 (517)
T PF12569_consen   77 GLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLY  153 (517)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence            444444222     234555555555533                                  2211   1333333334


Q ss_pred             HhcCCHHHHHHHHHHHHhc---------------CCCChhHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHH
Q 037499          133 LTCGKIDRMTDLFQIMEKY---------------VSPDACSY--NILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTF  194 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~  194 (262)
                      ....+.+-...++......               .+|+...|  .-+...|-..|++++|+.++++.++.  +|+ +..|
T Consensus       154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely  231 (517)
T PF12569_consen  154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELY  231 (517)
T ss_pred             cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence            3333333333444333211               01333333  44456666777777777777777775  343 4566


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499          195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI  258 (262)
Q Consensus       195 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  258 (262)
                      ..-.+.+-+.|++.+|.+.++..+..  -.-|...=+-.+..+.++|++++|.+++....+.+.
T Consensus       232 ~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  232 MTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            66667777777777777777777542  122444444555566677777777776666555543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=2.4e-09  Score=83.50  Aligned_cols=185  Identities=11%  Similarity=0.083  Sum_probs=145.3

Q ss_pred             cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD  143 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  143 (262)
                      .|+++.|.+.+++....+  .........+.-.+...|++++|++.|-++-..- ..+..+.-.+.+.|....+...|++
T Consensus       503 ngd~dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             cCcHHHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            377888888888877642  2222333334445677889999999887765432 3456677777888888889999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 037499          144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV  223 (262)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  223 (262)
                      ++.+.....+.|+.....+...|-+.|+-..|++.+-+--.. .+-+..+...|...|....-+++++.+|++..   -+
T Consensus       580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---li  655 (840)
T KOG2003|consen  580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LI  655 (840)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hc
Confidence            998888777788899999999999999999998887665554 55678888888888888888999999999885   57


Q ss_pred             CCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHH
Q 037499          224 KPDAQVFASLIKGL-CAVGELSLALGFKEEMVR  255 (262)
Q Consensus       224 ~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~  255 (262)
                      .|+..-|..++..| .+.|++.+|+++++....
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            89999999888655 578999999999998765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.26  E-value=3.9e-09  Score=92.02  Aligned_cols=209  Identities=11%  Similarity=0.081  Sum_probs=173.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS  124 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  124 (262)
                      +-+...|-..|....+.++.+.|.+++++....-++.-.   .-+|.++++.-...|.-+...++|+++.+..  -....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence            347788999999999999999999999999874322222   2357777777777788899999999999863  23567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CchHHHHHHHHHHHh
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PTLVTFGTLIYGLCL  203 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~  203 (262)
                      |..|...|.+.+.+++|.++++.|.+........|...+..+.+..+-++|.+++.+..+.=.+ -........+..-.+
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            8999999999999999999999998876678889999999999999999999999999875211 134455556666778


Q ss_pred             hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499          204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM  260 (262)
Q Consensus       204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p  260 (262)
                      .|+.+.+..+|+.....  .+-....|+..++.-.+.|+.+.++.+|++.+..++.|
T Consensus      1613 ~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             cCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            99999999999999874  33356689999999999999999999999999988875

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.23  E-value=9.1e-09  Score=76.99  Aligned_cols=188  Identities=9%  Similarity=-0.017  Sum_probs=131.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE---IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK-  123 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-  123 (262)
                      ......+..++..+...|+++.|...|+++....  +.+.   ..+..+..++.+.|++++|...++++.+.. +.+.. 
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~  106 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA  106 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence            4567788888889999999999999999988743  3332   466778888999999999999999988754 22222 


Q ss_pred             --hHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH
Q 037499          124 --SFNTLLNAMLTC--------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT  193 (262)
Q Consensus       124 --~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  193 (262)
                        ++..+..++...        |+.++|.+.|+.+....+.+...+..+......    .      ....        ..
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~------~~~~--------~~  168 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----R------NRLA--------GK  168 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----H------HHHH--------HH
Confidence              455555666554        678888888888887666444444332221110    0      0000        01


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ...+...+.+.|++++|...+++..+.+.-.| ....+..+..++.+.|+.++|..+++.+...
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            12455668889999999999999887633233 3568888999999999999999998888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.22  E-value=2.1e-09  Score=77.93  Aligned_cols=164  Identities=14%  Similarity=0.054  Sum_probs=138.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      |... ..+-..+...|+-+....+..+....  .+.+.......+....+.|++..|+..|.+..... ++|..+|+.+.
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg  141 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG  141 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence            5555 66777888889999999998887653  45666777778999999999999999999998776 88999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      -+|.+.|++++|..-|.+..+..+.++...+.+...+.-.|+++.|..++......+.. |..+-..+.......|++++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence            99999999999999999999988888888999999999999999999999999887543 55566667778889999999


Q ss_pred             HHHHHHHHH
Q 037499          210 ALKLKEDMM  218 (262)
Q Consensus       210 a~~~~~~~~  218 (262)
                      |.++...-.
T Consensus       221 A~~i~~~e~  229 (257)
T COG5010         221 AEDIAVQEL  229 (257)
T ss_pred             HHhhccccc
Confidence            999876554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.22  E-value=1.3e-08  Score=76.21  Aligned_cols=151  Identities=8%  Similarity=-0.074  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCCCh
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE-EIIFCNVISFYGRA--------RLLEHALQVFDEMSSFNVQRTV  122 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~  122 (262)
                      .++..+..++.+.|++++|+..++++.+...-.+. ..++..+..++.+.        |++++|.+.|+.+.+.. +-+.
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~  149 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSE  149 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCCh
Confidence            46788889999999999999999999875421122 12456666666654        78999999999998764 3333


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCchHHHHHHHHH
Q 037499          123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLIYG  200 (262)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~  200 (262)
                      ..+..+.....    ....      .       ......+...|.+.|++++|...++...+...  +.....+..+..+
T Consensus       150 ~~~~a~~~~~~----~~~~------~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~  212 (235)
T TIGR03302       150 YAPDAKKRMDY----LRNR------L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA  212 (235)
T ss_pred             hHHHHHHHHHH----HHHH------H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence            33332221111    0000      0       01123566778899999999999999887632  2235678888899


Q ss_pred             HHhhCCHHHHHHHHHHHHHh
Q 037499          201 LCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       201 ~~~~g~~~~a~~~~~~~~~~  220 (262)
                      +...|++++|..+++.+...
T Consensus       213 ~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       213 YLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.21  E-value=1.2e-08  Score=82.87  Aligned_cols=237  Identities=11%  Similarity=0.001  Sum_probs=191.9

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      ..+.-|...+......||+..|..++....+           ..+.+...|...+....+...+++|..+|.+....   
T Consensus       582 kae~lwlM~ake~w~agdv~~ar~il~~af~-----------~~pnseeiwlaavKle~en~e~eraR~llakar~~---  647 (913)
T KOG0495|consen  582 KAEILWLMYAKEKWKAGDVPAARVILDQAFE-----------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSI---  647 (913)
T ss_pred             cchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---
Confidence            3444566667777788999999999988743           44558889999999999999999999999998864   


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      .|+..+|.--++.---.++.++|++++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-.+..+..+..|..+.
T Consensus       648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence            5788888877777777899999999999888762 444567888889999999999999999888877777888999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----------------------
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY----------------------  221 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------------------  221 (262)
                      ..--+.|++-+|..++++.+..+.. +...|-..|++-.+.|+.+.|..+..+..+.+                      
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk  805 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK  805 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence            9999999999999999999887643 77889999999999999999998887776541                      


Q ss_pred             ------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          222 ------NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       222 ------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                            ...-|..+...+...+-...++++|.+.|.+.++.
T Consensus       806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~  846 (913)
T KOG0495|consen  806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK  846 (913)
T ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                  12224555566667777788899999999988773

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.20  E-value=2e-08  Score=79.94  Aligned_cols=205  Identities=12%  Similarity=-0.003  Sum_probs=132.6

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-LLHYDLIITKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      +|..+..+..++..+...|+.+.+.+.+.......         ....+ ..........+...|++++|.+.+++..+.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~   72 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL---------AARATERERAHVEALSAWIAGDLPKALALLEQLLDD   72 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh---------ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            56667777788888888888888766666653321         11112 223333445667778888888888888774


Q ss_pred             CCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499           81 TRVVPEEIIFCNVISFYG----RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA  156 (262)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  156 (262)
                        .|.+...+.. ...+.    ..+....+.+.+..... ..+........+...+...|++++|...+++..+..+.+.
T Consensus        73 --~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~  148 (355)
T cd05804          73 --YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA  148 (355)
T ss_pred             --CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence              2444444442 22222    23445555555544211 1122233444556677888888888888888888777777


Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCch--HHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPTL--VTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ..+..+...+...|++++|...+++...... .|+.  ..|..+...+...|++++|..++++...
T Consensus       149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            7888888888888888888888888776532 1222  2455677778888888888888888753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=3.5e-09  Score=83.11  Aligned_cols=195  Identities=10%  Similarity=0.059  Sum_probs=158.7

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      +-.+..+|....+.++-.+.|....+           -.+-++.+|..-.+...-.+++++|..=|++...-.  +-+..
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~-----------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~  429 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAED-----------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAY  429 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHh-----------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhH
Confidence            88899999999999999999999844           344477788888888888899999999999998743  44566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHH--H
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP------DACSY--N  160 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~--~  160 (262)
                      .|..+.-+..+.++++++...|++.++. +|..+..|+.....+...+++++|.+.|+......+.      ++.++  -
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K  508 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK  508 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence            7777888888999999999999999876 4777899999999999999999999999988765442      22221  1


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      .++. +.-.+++..|..++++..+.+.+ ....|..|.+.-.+.|+.++|+++|++...
T Consensus       509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  509 ALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2222 22448999999999999987543 567899999999999999999999998654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.19  E-value=1.3e-08  Score=78.04  Aligned_cols=206  Identities=10%  Similarity=0.028  Sum_probs=166.4

Q ss_pred             CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499            1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP---FRYNLLHYDLIITKLGRAKMFDEVQQILHQL   77 (262)
Q Consensus         1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   77 (262)
                      +.|.++........+|.+.|++.....+...+.+.+-      +..   ...-..+|..+++-....+..+.-...|++.
T Consensus       182 ~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~------l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         182 MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL------LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC------CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            3567777788889999999999999999999976532      000   0112346777787777777777777788888


Q ss_pred             HhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499           78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC  157 (262)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  157 (262)
                      ...  .+-++..-..++.-+.++|+.++|.++..+..+.+..|+    -...-.+.+-++.+.-++..++-.+..+.++.
T Consensus       256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence            764  466777788889999999999999999999988876665    22233456778888888888888777777789


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .+.++...|.+.+.|.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.+..++....
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999999999999999987774  789999999999999999999999999887643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.19  E-value=2.8e-08  Score=86.92  Aligned_cols=237  Identities=9%  Similarity=0.009  Sum_probs=189.2

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.+...|-.-+......++.++|.++++++...-+      .+.-.--...|-++++.-..-|.-+...++|+++.+. 
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN------~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTIN------FREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY- 1526 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC------cchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-
Confidence            467778899999999999999999999999865421      1122223457888888888889999999999999984 


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSY  159 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~  159 (262)
                        -..-.+|..|...|.+...+++|.++|+.|.+.- ......|...+..+.+..+-+.|.+++.+..+.-+  ......
T Consensus      1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred             --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence              2334568899999999999999999999998763 35678999999999999999999999998887655  345566


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA--QVFASLIKGL  237 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~  237 (262)
                      .-.+..-.+.|+.+.+..+|+....... --...|+.+|..-.++|+.+.+..+|+++... ++.|..  ..|..-+..=
T Consensus      1604 skfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHH
Confidence            6677777899999999999999998743 35679999999999999999999999999876 766642  3566666555


Q ss_pred             HhcCChhHHHHHH
Q 037499          238 CAVGELSLALGFK  250 (262)
Q Consensus       238 ~~~g~~~~a~~~~  250 (262)
                      -+.|+-..+..+=
T Consensus      1682 k~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVK 1694 (1710)
T ss_pred             HhcCchhhHHHHH
Confidence            5667755444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.19  E-value=2.8e-09  Score=87.31  Aligned_cols=221  Identities=14%  Similarity=0.101  Sum_probs=148.3

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      ||-......+...+.+.|-...|+.+|+++                   ..|...+.+|...|+-..|..+..+..++  
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~~kaeei~~q~lek--  453 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQHGKAEEINRQELEK--  453 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--
Confidence            455556678899999999999999999987                   35778899999999999999999888874  


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                       +|++..|..+.+......-+++|.++++.....       +-..+.....++++++++.+.|+.-.+..+....+|-..
T Consensus       454 -~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~  525 (777)
T KOG1128|consen  454 -DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGL  525 (777)
T ss_pred             -CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhc
Confidence             688989998888777766777777777654322       111111122235666666666666666555566666666


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      ..+..+.++++.|.+.|....... +.+...||.+-.+|.+.|+-.+|...+.+..+- . .-+-..|...+-.-.+.|.
T Consensus       526 G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge  602 (777)
T KOG1128|consen  526 GCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGE  602 (777)
T ss_pred             cHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhccc
Confidence            666666666666666666666542 223456666666666666666666666666553 2 3333445555555566666


Q ss_pred             hhHHHHHHHHHHH
Q 037499          243 LSLALGFKEEMVR  255 (262)
Q Consensus       243 ~~~a~~~~~~m~~  255 (262)
                      ++.|.+.+.++.+
T Consensus       603 ~eda~~A~~rll~  615 (777)
T KOG1128|consen  603 FEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666544

>PLN02789 farnesyltranstransferase

Probab=99.18  E-value=6.3e-08  Score=75.03  Aligned_cols=228  Identities=11%  Similarity=0.020  Sum_probs=172.0

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCccHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      ..+-.++...++.++|+.+...+..           -.+-+..+|+.-..++...| ++++++..++++.+..  +-+..
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~-----------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyq  107 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIR-----------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQ  107 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHH-----------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchH
Confidence            3455666778899999999999843           34446778887777788887 6899999999998853  55666


Q ss_pred             HHHHHHHHHHhcCCH--HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           89 IFCNVISFYGRARLL--EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      +|+....++.+.++.  ++++.+++++.+.. +-+..+|+....++...|+++++++.+.++.+.++.|...|+.....+
T Consensus       108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        108 IWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            777666556666653  67899999999876 778899999999999999999999999999999998888898887776


Q ss_pred             Hhc---CCh----hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh----CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          167 VVS---RRL----EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE----LRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       167 ~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      .+.   |..    ++.......++... +-|...|+-+...+...    ++..+|..++.+..+.  -..+......|+.
T Consensus       187 ~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d  263 (320)
T PLN02789        187 TRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLD  263 (320)
T ss_pred             HhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHH
Confidence            655   333    46777777777663 33677888777777663    4456788888887652  2446778888899


Q ss_pred             HHHhcC------------------ChhHHHHHHHHHH
Q 037499          236 GLCAVG------------------ELSLALGFKEEMV  254 (262)
Q Consensus       236 ~~~~~g------------------~~~~a~~~~~~m~  254 (262)
                      .|+...                  ..++|..++..+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        264 LLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            888632                  2367888888873

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.6e-08  Score=78.03  Aligned_cols=235  Identities=15%  Similarity=0.091  Sum_probs=141.0

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      .|..-...++..+...|+.++|+..|+..+-           ..+.++.......-.+.+.|++++...+...+......
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-----------~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~  298 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-----------ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY  298 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-----------CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc
Confidence            3444456788889999999999999998743           22223333334444455666666655555554432101


Q ss_pred             --------------------------------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499           84 --------------------------------VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA  131 (262)
Q Consensus        84 --------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  131 (262)
                                                      +.+...+..-...+...+++++|.-.|+...... |.+...|..|+.+
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS  377 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence                                            1122222222334445555555555555554432 3445556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH-HHHH-hcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILM-HGCV-VSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVD  208 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~  208 (262)
                      |...|++.+|..+-+...+.-+.+..+.+.+. ..+. ...--++|.++++.-.+.  .|+ ....+.+...+...|..+
T Consensus       378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~  455 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTK  455 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccc
Confidence            66666666655555544444334444433331 1111 112234555555555443  343 335666777788999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +++.++++....   .||....+.|.+.+...+.+++|++.|.....
T Consensus       456 D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  456 DIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             hHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999998854   78999999999999999999999998887665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.15  E-value=3e-08  Score=72.04  Aligned_cols=162  Identities=12%  Similarity=0.084  Sum_probs=128.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      |..+ ..+-+.+...|+-+....+........ +.+.......+....+.|++.+|+..|++.....++|..+|+.+.-+
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa  143 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA  143 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence            4445 667778888888888888887765432 44555666688888899999999999999998888999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499          166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL  245 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  245 (262)
                      |.+.|+++.|..-|.+..+... -+...++.+.-.+.-.|+.+.|..++......  -.-|..+-..+.-+....|++++
T Consensus       144 ldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         144 LDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHH
Confidence            9999999999999999888632 25567777877888899999999999888653  23367777778888889999999


Q ss_pred             HHHHHHH
Q 037499          246 ALGFKEE  252 (262)
Q Consensus       246 a~~~~~~  252 (262)
                      |..+...
T Consensus       221 A~~i~~~  227 (257)
T COG5010         221 AEDIAVQ  227 (257)
T ss_pred             HHhhccc
Confidence            8877543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.14  E-value=1.3e-07  Score=75.29  Aligned_cols=204  Identities=11%  Similarity=-0.021  Sum_probs=142.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH-
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE-IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT-  127 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  127 (262)
                      ....|..+...+...|+.+.+.+.+....+.....++. .........+...|++++|.+.+++..+.. |.+...+.. 
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~   83 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH   83 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence            45667777778888888888877777766543222232 223333455678899999999999988764 445545542 


Q ss_pred             --HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          128 --LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       128 --ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                        ........+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence              22222234556666666655222222344555677788899999999999999999974 335667788888999999


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          206 RVDEALKLKEDMMRVYNVKPDA--QVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       206 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++++|..++++..+.....|+.  ..|..+...+...|++++|.+++++...
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            9999999999987642222333  3466788889999999999999999854

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.12  E-value=5.2e-08  Score=70.47  Aligned_cols=156  Identities=12%  Similarity=0.112  Sum_probs=123.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499           58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK  137 (262)
Q Consensus        58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  137 (262)
                      +..|...|+++.+....+.+..     |.        ..+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence            3578888998887555432221     11        12223677788888888888776 7888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHH-HHhcCC--hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499          138 IDRMTDLFQIMEKYVSPDACSYNILMHG-CVVSRR--LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK  214 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  214 (262)
                      +++|...|++.....+.+...+..+..+ +...|+  .++|.+++++..+.+.. +...+..+...+.+.|++++|+..|
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999988899999999887 467777  59999999999997543 6778888888999999999999999


Q ss_pred             HHHHHhcCCCCCHHHH
Q 037499          215 EDMMRVYNVKPDAQVF  230 (262)
Q Consensus       215 ~~~~~~~~~~p~~~~~  230 (262)
                      +++.+  ..+|+..-+
T Consensus       168 ~~aL~--l~~~~~~r~  181 (198)
T PRK10370        168 QKVLD--LNSPRVNRT  181 (198)
T ss_pred             HHHHh--hCCCCccHH
Confidence            99987  445555444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.12  E-value=7.9e-08  Score=78.17  Aligned_cols=206  Identities=12%  Similarity=0.069  Sum_probs=152.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhc-----C-
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHD----TR-VVPEEII-FCNVISFYGRARLLEHALQVFDEMSSF-----N-  117 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-  117 (262)
                      -..+...+...|...|+++.|..++++..+.    .| ..|...+ .+.+...|...+++.+|..+|+++...     | 
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3455666999999999999999999888764    12 1344443 344778899999999999999988642     2 


Q ss_pred             -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 037499          118 -VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--PD-ACSYNILMHGCVVSRRLEDAWKVFDEMLKR---  185 (262)
Q Consensus       118 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---  185 (262)
                       .+.-..+++.|..+|.+.|++++|...++...+.     +.  +. ...++.++..+...++++.|..+++...+.   
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence             1122356788888999999999988887765432     11  22 234677888899999999999999876642   


Q ss_pred             CCCCc----hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          186 RLQPT----LVTFGTLIYGLCLELRVDEALKLKEDMMRVY----N-VKPD-AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       186 ~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      -+.++    ..+++.|...|...|++++|.++++++....    + ..+. -..++.|...|.+.++..+|.++|.+...
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            12222    3578999999999999999999999876642    1 1222 34678888999999999999999988643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.08  E-value=1e-07  Score=81.11  Aligned_cols=148  Identities=11%  Similarity=0.011  Sum_probs=123.1

Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      ++.+...+..|.....+.|++++|+.+++...+.. |.+......+...+.+.+++++|+..+++.....+.+......+
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            45668888888999999999999999999998874 55667788888999999999999999999999888888899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI  234 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  234 (262)
                      ..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.  ..|...-|+..+
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~  229 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHH
Confidence            999999999999999999999843 234778888888889999999999999998874  445555555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.07  E-value=1.4e-08  Score=77.68  Aligned_cols=190  Identities=16%  Similarity=0.092  Sum_probs=133.3

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR-YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      ..+...+...++-+.++.-++.....          ... .+..........+...|++++|++++...       .+..
T Consensus        70 ~~la~y~~~~~~~e~~l~~l~~~~~~----------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE  132 (290)
T PF04733_consen   70 RLLAEYLSSPSDKESALEELKELLAD----------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLE  132 (290)
T ss_dssp             HHHHHHHCTSTTHHCHHHHHHHCCCT----------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHh----------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------Cccc
Confidence            33444444435666677666554332          222 23334444445677789999999998643       3466


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML----TCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      .....+.+|.+.++++.|.+.++.|.+.+  .| .+...+..++.    ..+.+.+|..+|+++.....+++.+.+.+..
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            67778899999999999999999998753  33 33333444433    3457999999999998876688999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH-HHHHHHHHHHHHh
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDMMRV  220 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~  220 (262)
                      ++...|++++|.+++.+....+. -+..+...++.+....|+. +.+.+++.++...
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            99999999999999999887653 3677888888888888888 6788899888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.07  E-value=2.9e-08  Score=71.77  Aligned_cols=157  Identities=8%  Similarity=0.122  Sum_probs=126.3

Q ss_pred             HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHH
Q 037499           13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN   92 (262)
Q Consensus        13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   92 (262)
                      +..|.+.|+++.+....+.+...           .  .         .+...++.++++..++...+..  +.+...|..
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~-----------~--~---------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~   78 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADP-----------L--H---------QFASQQTPEAQLQALQDKIRAN--PQNSEQWAL   78 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCc-----------c--c---------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence            35677899998876665443111           0  0         1223677788888888888753  788999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM-LTCGK--IDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      +...|...|++++|...|++..+.. +.+...+..+..++ ...|+  .++|.+++++..+..+.+..++..+...+.+.
T Consensus        79 Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~  157 (198)
T PRK10370         79 LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ  157 (198)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence            9999999999999999999999886 66788888888864 67777  59999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTFG  195 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (262)
                      |++++|...|+++.+.. +|+..-+.
T Consensus       158 g~~~~Ai~~~~~aL~l~-~~~~~r~~  182 (198)
T PRK10370        158 ADYAQAIELWQKVLDLN-SPRVNRTQ  182 (198)
T ss_pred             CCHHHHHHHHHHHHhhC-CCCccHHH
Confidence            99999999999999874 44554443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.06  E-value=2.7e-08  Score=84.51  Aligned_cols=149  Identities=11%  Similarity=0.030  Sum_probs=129.0

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499           46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF  125 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  125 (262)
                      .+..++..+..|.....+.|.+++|..+++...+.  .|.+......++..+.+.+++++|+..+++..... +-+....
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~  157 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI  157 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence            45667999999999999999999999999999985  35567788899999999999999999999999876 6667788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHH
Q 037499          126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI  198 (262)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  198 (262)
                      ..+..++.+.|++++|.++|+++...++.+..++..+..++...|+.++|...|+...+. ..|....|+.++
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~  229 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence            888899999999999999999999866677899999999999999999999999999876 233445555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.2e-07  Score=73.27  Aligned_cols=225  Identities=12%  Similarity=0.014  Sum_probs=121.9

Q ss_pred             HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH-HHHH
Q 037499           14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI-IFCN   92 (262)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~   92 (262)
                      .+.+..++...|..++-.+..         ...++-|+.....+..++...|+.++|+..|++..-.   .|... ....
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~---------~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~  271 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHD---------NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDL  271 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHh---------hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHH
Confidence            344445666666655554433         2356678999999999999999999999999998753   33322 2222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL  172 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  172 (262)
                      ....+.+.|+.+....+...+.... ..+...|-.-+..+....+++.|+.+-++.....+.+...+-.-...+...++.
T Consensus       272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~  350 (564)
T KOG1174|consen  272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH  350 (564)
T ss_pred             HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence            2233345556555555555544322 122223333333333444444444444444444333334443334444444444


Q ss_pred             hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH------------------------------------HHHHHHHH
Q 037499          173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD------------------------------------EALKLKED  216 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~------------------------------------~a~~~~~~  216 (262)
                      ++|.-.|+...... +-+..+|.-|+..|...|++.                                    +|.++++.
T Consensus       351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence            44444444444321 113344444444444444444                                    44455444


Q ss_pred             HHHhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          217 MMRVYNVKPDA-QVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       217 ~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      -.   .+.|+. ...+.+...|...|..+.++.++++...
T Consensus       430 ~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~  466 (564)
T KOG1174|consen  430 SL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI  466 (564)
T ss_pred             hh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence            43   335543 3456666778888888889988888765

>PF12854 PPR_1: PPR repeat

Probab=99.02  E-value=5.1e-10  Score=55.87  Aligned_cols=32  Identities=31%  Similarity=0.672  Sum_probs=19.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       222 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      |+.||..||++||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55566666666666666666666666666655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.01  E-value=5.4e-08  Score=66.73  Aligned_cols=95  Identities=6%  Similarity=-0.103  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      +..+...+...|++++|...|+...... +.+..+|..+..++...|++++|...|+......+.+...+..+..++...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            3345556666667777777776666654 455666666666666677777777777766666666666666666666677


Q ss_pred             CChhHHHHHHHHHHHC
Q 037499          170 RRLEDAWKVFDEMLKR  185 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~  185 (262)
                      |++++|...|+...+.
T Consensus       106 g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        106 GEPGLAREAFQTAIKM  121 (144)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            7777777777666664

>PF12854 PPR_1: PPR repeat

Probab=99.01  E-value=5.9e-10  Score=55.63  Aligned_cols=32  Identities=28%  Similarity=0.573  Sum_probs=15.3

Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499          117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus       117 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                      |+.||..+|++||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=2.2e-08  Score=82.23  Aligned_cols=211  Identities=11%  Similarity=0.052  Sum_probs=171.2

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      +..|..++..|...|+.++|..+..+..+            .+||+..|..+++......-++.|.++.+....+     
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~le------------k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-----  486 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELE------------KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-----  486 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhc------------CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-----
Confidence            34577889999999999999999988733            4678999999999988888899999998877653     


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                         .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+.|.......+.+...||++-.+
T Consensus       487 ---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  487 ---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             ---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence               12222333345799999999999888765 66788999999999999999999999999998888889999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499          166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC  238 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  238 (262)
                      |.+.++..+|+..+.+..+.+ .-+...|...+....+.|.+++|++.+.++.......-|..+...++....
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            999999999999999999987 446677777888889999999999999998765333335555544444433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.99  E-value=2.6e-08  Score=83.53  Aligned_cols=197  Identities=13%  Similarity=0.126  Sum_probs=131.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499           45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS  124 (262)
Q Consensus        45 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  124 (262)
                      .|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-+ ..+.+...++.++.+...+++.+.+.           .|...|
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt   85 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADT   85 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence            478899999999999999999999999 99988886 58888999999999988888887765           678889


Q ss_pred             HHHHHHHHHhcCCHHH---HHHHHHHHH----hcCCCChhHHHH---------------HHHHHHhcCChhHHHHHHHHH
Q 037499          125 FNTLLNAMLTCGKIDR---MTDLFQIME----KYVSPDACSYNI---------------LMHGCVVSRRLEDAWKVFDEM  182 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~---a~~~~~~~~----~~~~~~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~m  182 (262)
                      |+.|+.+|...|+...   ..+.+....    ..|......|-.               .+.-..-.|-++.+.+++..+
T Consensus        86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~  165 (1088)
T KOG4318|consen   86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV  165 (1088)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999998654   222222221    122222222211               122222333344444444333


Q ss_pred             HHCC-CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          183 LKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       183 ~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      -... ..|..+    +++-+....  ....++........+ .|+..+|..++.+-...|+.+.|..++.+|+++|++.+
T Consensus       166 Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir  238 (1088)
T KOG4318|consen  166 PVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR  238 (1088)
T ss_pred             CcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence            2221 111111    233333222  223344433333223 69999999999999999999999999999999999865

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=9.9e-07  Score=69.63  Aligned_cols=230  Identities=10%  Similarity=0.037  Sum_probs=154.1

Q ss_pred             HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHH
Q 037499           14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV   93 (262)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   93 (262)
                      .--..++++.+|..+|++..           .....+...|...+.+-.+...+..|..+++.....  +|--...|.-.
T Consensus        81 qwEesq~e~~RARSv~ERAL-----------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY  147 (677)
T KOG1915|consen   81 QWEESQKEIQRARSVFERAL-----------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY  147 (677)
T ss_pred             HHHHhHHHHHHHHHHHHHHH-----------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence            33345788888899998883           355667778888888888888888888888888763  34444556666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE  173 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  173 (262)
                      +.+=...|++..|.++|++-.+-  .|+...|++.++.-.+...++.|..+++...-.. |+..+|-.....-.++|+..
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~  224 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVA  224 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHH
Confidence            66666778888888888877663  7888888888888888888888888888776432 77777877777777888888


Q ss_pred             HHHHHHHHHHHC-CC-CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH-------------------h------------
Q 037499          174 DAWKVFDEMLKR-RL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMR-------------------V------------  220 (262)
Q Consensus       174 ~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------------------~------------  220 (262)
                      .+..+|+...+. |- ..+...+.++...=.++..++.|.-+|+-..+                   +            
T Consensus       225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv  304 (677)
T KOG1915|consen  225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV  304 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence            888887777654 20 01112222222222233333333333332211                   0            


Q ss_pred             -----------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499          221 -----------YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM  260 (262)
Q Consensus       221 -----------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p  260 (262)
                                 ...+.|..+|--.+..-...|+.+...++|++.+.. ++|
T Consensus       305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp  354 (677)
T KOG1915|consen  305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP  354 (677)
T ss_pred             hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence                       123346667777777778889999999999998763 555

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.98  E-value=5.2e-07  Score=71.29  Aligned_cols=153  Identities=14%  Similarity=0.066  Sum_probs=93.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499           55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT  134 (262)
Q Consensus        55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  134 (262)
                      .-....+...|+++.|+..+..+...  .|-|++.+......+.+.++..+|.+.++++.... +......-++..+|.+
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~  386 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence            33334555566677777777766653  35555555666666667777777777777666653 2224555556666677


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499          135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK  214 (262)
Q Consensus       135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  214 (262)
                      .|++.+|+.+++......+.|+..|..+..+|...|+..++....-                  ..+...|+++.|+..+
T Consensus       387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l  448 (484)
T COG4783         387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFL  448 (484)
T ss_pred             cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHH
Confidence            7777777777776666666666777777777776666655544332                  2344567777777777


Q ss_pred             HHHHHhcCCCCCHHHH
Q 037499          215 EDMMRVYNVKPDAQVF  230 (262)
Q Consensus       215 ~~~~~~~~~~p~~~~~  230 (262)
                      ....+  .++++..+|
T Consensus       449 ~~A~~--~~~~~~~~~  462 (484)
T COG4783         449 MRASQ--QVKLGFPDW  462 (484)
T ss_pred             HHHHH--hccCCcHHH
Confidence            77665  334444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.98  E-value=2.1e-06  Score=70.71  Aligned_cols=196  Identities=12%  Similarity=0.125  Sum_probs=136.8

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC  135 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  135 (262)
                      -....+...|++++|++.++.-...  +.............+.+.|+.++|..+|..+.+.+ |.+..-|..+..+..-.
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence            3455778899999999999887653  55667777888999999999999999999999987 55555556666655222


Q ss_pred             -----CCHHHHHHHHHHHHhcCC------------CC--------------------hhHHHHHHHHHHhcCChhHHHHH
Q 037499          136 -----GKIDRMTDLFQIMEKYVS------------PD--------------------ACSYNILMHGCVVSRRLEDAWKV  178 (262)
Q Consensus       136 -----g~~~~a~~~~~~~~~~~~------------~~--------------------~~~~~~l~~~~~~~g~~~~a~~~  178 (262)
                           ...+...++++++....+            .+                    +.+|+.+-..|......+-...+
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l  165 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL  165 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence                 246677777777654321            01                    12233343444433334444455


Q ss_pred             HHHHHHC----C----------CCCchH--HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 037499          179 FDEMLKR----R----------LQPTLV--TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVG  241 (262)
Q Consensus       179 ~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  241 (262)
                      +......    +          -.|+..  ++..+.+.|...|++++|++++++..+.   .|+ +..|..-...+-+.|
T Consensus       166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCC
Confidence            5444322    1          124443  4455677888999999999999999864   554 668888889999999


Q ss_pred             ChhHHHHHHHHHHHcC
Q 037499          242 ELSLALGFKEEMVRNK  257 (262)
Q Consensus       242 ~~~~a~~~~~~m~~~g  257 (262)
                      ++.+|.+.++..++..
T Consensus       243 ~~~~Aa~~~~~Ar~LD  258 (517)
T PF12569_consen  243 DLKEAAEAMDEARELD  258 (517)
T ss_pred             CHHHHHHHHHHHHhCC
Confidence            9999999999887643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.95  E-value=1e-07  Score=65.33  Aligned_cols=94  Identities=10%  Similarity=-0.109  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE  204 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  204 (262)
                      +..+...+...|++++|...|+......+.+...|..+..++.+.|++++|...|++..... +.+...+..+..++...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence            33455566666677777777766666666666666666666667777777777776666653 23555666666666666


Q ss_pred             CCHHHHHHHHHHHHH
Q 037499          205 LRVDEALKLKEDMMR  219 (262)
Q Consensus       205 g~~~~a~~~~~~~~~  219 (262)
                      |++++|+..|+...+
T Consensus       106 g~~~eAi~~~~~Al~  120 (144)
T PRK15359        106 GEPGLAREAFQTAIK  120 (144)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777777776666654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.94  E-value=1.4e-07  Score=64.15  Aligned_cols=97  Identities=11%  Similarity=0.111  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      .....+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++.....+.+..++..+...+.
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            334445555556666666666666655544 4455555556666666666666666666655555555555555566666


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 037499          168 VSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~  185 (262)
                      ..|++++|...|+...+.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        97 ALGEPESALKALDLAIEI  114 (135)
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666666666666655553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.92  E-value=2.7e-06  Score=67.30  Aligned_cols=235  Identities=14%  Similarity=0.085  Sum_probs=178.6

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH--HHHHHHH-----HHH---HhcCChhHHH
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL--LHYDLII-----TKL---GRAKMFDEVQ   71 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-----~~~---~~~~~~~~a~   71 (262)
                      +|.|-.+|...++.-...|+.++..++|+....+           ++|-.  ..|.-.|     -++   ....+++.+.
T Consensus       318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-----------vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr  386 (677)
T KOG1915|consen  318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-----------VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR  386 (677)
T ss_pred             CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5677788999999999999999999999999554           34321  1222222     122   2358999999


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHH----HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037499           72 QILHQLKHDTRVVPEEIIFCNVISF----YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI  147 (262)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  147 (262)
                      ++++...+-  +|-...|+.-+--.    -.++.++..|.+++.....  .-|-..+|...|..-.+.+++|....++++
T Consensus       387 ~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk  462 (677)
T KOG1915|consen  387 QVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK  462 (677)
T ss_pred             HHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999873  55556666554433    4577899999999987764  468888999999999999999999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      ..+.+|.+..+|......-...|+.+.|..+|.-..+.. .......|.+.|..=...|.++.|..+++++.+.   .+.
T Consensus       463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r---t~h  539 (677)
T KOG1915|consen  463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR---TQH  539 (677)
T ss_pred             HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh---ccc
Confidence            999999999999999999999999999999999998762 2233556777777778899999999999999876   334


Q ss_pred             HHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHH
Q 037499          227 AQVFASLIKGLC-----AVG-----------ELSLALGFKEEMV  254 (262)
Q Consensus       227 ~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~  254 (262)
                      ..+|-.+..--.     +.|           .+..|..+|++..
T Consensus       540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            445555443222     233           4556777777653

>PLN02789 farnesyltranstransferase

Probab=98.91  E-value=2.8e-06  Score=65.99  Aligned_cols=198  Identities=8%  Similarity=-0.014  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEMSSFNVQRTVKSFNTLLNA  131 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  131 (262)
                      ++..+-..+...++.++|+.+..++.+..  +-+..+|+.-..++...+ ++++++..++++.+.. +-+..+|+.....
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            45555566677889999999999999853  444556666666667777 6899999999999876 5666778877666


Q ss_pred             HHhcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh---CC
Q 037499          132 MLTCGKI--DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE---LR  206 (262)
Q Consensus       132 ~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~  206 (262)
                      +.+.|+.  ++++.+++++.+..+-|..+|+...-++.+.|+++++++.++++++.++. |...|+.....+.+.   |+
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence            6666763  77899999999988899999999999999999999999999999998654 556666665555444   22


Q ss_pred             H----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHc
Q 037499          207 V----DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV----GELSLALGFKEEMVRN  256 (262)
Q Consensus       207 ~----~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~  256 (262)
                      .    ++.+.+..++...  .+-|...|+.+...+...    ++..+|.+.+.+..+.
T Consensus       195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~  250 (320)
T PLN02789        195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK  250 (320)
T ss_pred             ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence            2    4567777666653  234667787777777763    3445677777776553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.91  E-value=3.2e-07  Score=79.15  Aligned_cols=204  Identities=6%  Similarity=0.015  Sum_probs=132.4

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.+...+..|+..+...+++++|.++.+....           ..+-....|..+...+.+.++.+.+..+  .+... 
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~-----------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-   92 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLK-----------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-   92 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-
Confidence            466677788899999899999999999886533           2333445555555577777776666665  33321 


Q ss_pred             CCCccH-------------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499           82 RVVPEE-------------------IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT  142 (262)
Q Consensus        82 ~~~~~~-------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  142 (262)
                       ++.+.                   ..+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... +.++|+
T Consensus        93 -~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~  169 (906)
T PRK14720         93 -FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI  169 (906)
T ss_pred             -cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence             22222                   456667777777888888888888888776 66777888888888877 888888


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------------------CCCCchHHHHHHHHHHHh
Q 037499          143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-------------------RLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------------------~~~~~~~~~~~li~~~~~  203 (262)
                      +++.+....              +...+++.++..++.++...                   |..--..++..+-..|..
T Consensus       170 ~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~  235 (906)
T PRK14720        170 TYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA  235 (906)
T ss_pred             HHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence            887776543              22333344444444433332                   222223344445566777


Q ss_pred             hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499          204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC  238 (262)
Q Consensus       204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  238 (262)
                      ..+|++++.+++.+.+.  -+-|.....-++.+|.
T Consensus       236 ~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        236 LEDWDEVIYILKKILEH--DNKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence            77888888888888763  2336667777777776

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=5.8e-06  Score=65.56  Aligned_cols=168  Identities=9%  Similarity=-0.046  Sum_probs=121.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499           46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF  125 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  125 (262)
                      ...|+...+...+........-..+-.++....+.    -......-....+...|+++.|+..++.+.+.- |-|+..+
T Consensus       269 ~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~  343 (484)
T COG4783         269 LDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR----GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYL  343 (484)
T ss_pred             CCCccHHHHHHHHHHHhccccccchHHHHHHHhCc----cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHH
Confidence            44556666666666555544444343333333321    112222233334557899999999999988763 5566667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                      ......+.+.++..+|.+.++.+....+.....+-.+..++.+.|++.+|..+++...... +-|+..|..|.++|...|
T Consensus       344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g  422 (484)
T COG4783         344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG  422 (484)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence            7778899999999999999999998877668888889999999999999999999888773 558889999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 037499          206 RVDEALKLKEDMMR  219 (262)
Q Consensus       206 ~~~~a~~~~~~~~~  219 (262)
                      +..++.....+...
T Consensus       423 ~~~~a~~A~AE~~~  436 (484)
T COG4783         423 NRAEALLARAEGYA  436 (484)
T ss_pred             chHHHHHHHHHHHH
Confidence            99888776655543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.88  E-value=2.9e-07  Score=62.52  Aligned_cols=118  Identities=13%  Similarity=0.168  Sum_probs=94.5

Q ss_pred             HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037499          109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ  188 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  188 (262)
                      .|++..... +.+......+...+...|++++|.+.|+.....++.+...+..+...+.+.|++++|...++...+.+ +
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p   82 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P   82 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence            455555543 33456677788888999999999999999988888888999999999999999999999999988764 3


Q ss_pred             CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 037499          189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA  231 (262)
Q Consensus       189 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~  231 (262)
                      .+...+..+...+...|++++|...|+...+.   .|+...+.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~  122 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEI---CGENPEYS  122 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccchHH
Confidence            35667777888899999999999999998864   45544433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=6.4e-07  Score=72.04  Aligned_cols=191  Identities=12%  Similarity=0.054  Sum_probs=134.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG  136 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  136 (262)
                      ...-+.+.|++.+|.-.|+...++.  |-+...|..|...-...++-..|+..+++..+.. +.+..+.-.|.-.|...|
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG  367 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence            3446678899999999999998864  6678899999999999999999999999999876 667788888888888888


Q ss_pred             CHHHHHHHHHHHHhcC-----------------------------------------C--CChhHHHHHHHHHHhcCChh
Q 037499          137 KIDRMTDLFQIMEKYV-----------------------------------------S--PDACSYNILMHGCVVSRRLE  173 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~-----------------------------------------~--~~~~~~~~l~~~~~~~g~~~  173 (262)
                      .-..|++.++.-....                                         +  .|+.+...|.-.|--.|+++
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            8888888776653321                                         1  34455555555555666677


Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 037499          174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ-VFASLIKGLCAVGELSLALGFKEE  252 (262)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~  252 (262)
                      +|.+.|+...... +-|...||.|...++...+.++|+..|.+..+   +.|+.+ +...|.-+|...|.+++|...|-+
T Consensus       448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            7777777666643 22455666666666666666777777776663   355532 344455566666666666666655


Q ss_pred             HH
Q 037499          253 MV  254 (262)
Q Consensus       253 m~  254 (262)
                      .+
T Consensus       524 AL  525 (579)
T KOG1125|consen  524 AL  525 (579)
T ss_pred             HH
Confidence            43

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.85  E-value=3.7e-06  Score=69.98  Aligned_cols=241  Identities=16%  Similarity=0.053  Sum_probs=177.2

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.||.+.+.+.--|+..++.+.|.+..+...+-          +...++..|..+.-.+...+++.+|+.+.+......
T Consensus       474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l----------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~  543 (799)
T KOG4162|consen  474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL----------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF  543 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh----------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence            6788889999999999999999999999988554          234589999999999999999999999998887754


Q ss_pred             CCC------------------ccHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHh------
Q 037499           82 RVV------------------PEEIIFCNVISFYGRA-----------------------RLLEHALQVFDEMS------  114 (262)
Q Consensus        82 ~~~------------------~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~------  114 (262)
                      |..                  -...|+..++..+-..                       .+..++.+....+.      
T Consensus       544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~  623 (799)
T KOG4162|consen  544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ  623 (799)
T ss_pred             hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence            220                  0122233333322210                       01111111111110      


Q ss_pred             --hcC---------CCC--C------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499          115 --SFN---------VQR--T------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA  175 (262)
Q Consensus       115 --~~~---------~~~--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  175 (262)
                        ..|         ..|  +      ...|......+.+.+..++|...+.+.....+.....|......+...|.+++|
T Consensus       624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA  703 (799)
T KOG4162|consen  624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEA  703 (799)
T ss_pred             hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHH
Confidence              001         001  1      123455666778888999999898888887778888888888999999999999


Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK--LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      ...|......+. .++.+.+++..++.+.|+...|.+  ++..+.+.  -+.+...|..+...+.+.|+.++|.+.|...
T Consensus       704 ~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  704 KEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            999999888632 245688889999999999888888  88888863  3457889999999999999999999999887


Q ss_pred             HH
Q 037499          254 VR  255 (262)
Q Consensus       254 ~~  255 (262)
                      .+
T Consensus       781 ~q  782 (799)
T KOG4162|consen  781 LQ  782 (799)
T ss_pred             Hh
Confidence            65

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.84  E-value=3.5e-06  Score=68.85  Aligned_cols=233  Identities=15%  Similarity=0.073  Sum_probs=161.8

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |..+.|....+-.+...|+-++|.+..+...           +...-+.++|+.+.-.+....++++|++.|....... 
T Consensus        38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~gl-----------r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-  105 (700)
T KOG1156|consen   38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGL-----------RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-  105 (700)
T ss_pred             CccchhHHhccchhhcccchHHHHHHHHHHh-----------ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-
Confidence            3445555666667778888999988888873           3455678899999988888899999999999998753 


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYN  160 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~  160 (262)
                       +.|..++.-+.-.-.+.++++.......++.+.. +.....|..+..++.-.|++..|..+++..++...  |+...+.
T Consensus       106 -~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e  183 (700)
T KOG1156|consen  106 -KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE  183 (700)
T ss_pred             -CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence             6778888888888888899998888888888764 44566788888888899999999999988887763  6666654


Q ss_pred             HHH------HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHH-H
Q 037499          161 ILM------HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS-L  233 (262)
Q Consensus       161 ~l~------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l  233 (262)
                      ...      ......|.++.|.+.+..-... +......-.+-...+.+.+++++|..++..+...   .||..-|.. +
T Consensus       184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l  259 (700)
T KOG1156|consen  184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGL  259 (700)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHH
Confidence            332      2334667777777766654432 1111222233445677889999999999988864   565554444 4


Q ss_pred             HHHHHhcCChhHHH-HHHHHH
Q 037499          234 IKGLCAVGELSLAL-GFKEEM  253 (262)
Q Consensus       234 ~~~~~~~g~~~~a~-~~~~~m  253 (262)
                      ..++.+.-+.-++. .+|...
T Consensus       260 ~~~lgk~~d~~~~lk~ly~~l  280 (700)
T KOG1156|consen  260 EKALGKIKDMLEALKALYAIL  280 (700)
T ss_pred             HHHHHHHhhhHHHHHHHHHHH
Confidence            44443333323333 444444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=7.4e-06  Score=60.06  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV-  167 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-  167 (262)
                      ....-...|...+++++|++......      +......=+..+.+..+++-|...+++|...  .+..|.+.+..++. 
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~  181 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVK  181 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHH
Confidence            33344456777888888887776522      2223333345566777788888888888764  44445554544444 


Q ss_pred             ---hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499          168 ---VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS  244 (262)
Q Consensus       168 ---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  244 (262)
                         -.+.+..|.-+|++|-++ ..|+..+.+-...++...|++++|..+++....+  -.-++.+...++-+-...|...
T Consensus       182 la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~  258 (299)
T KOG3081|consen  182 LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDA  258 (299)
T ss_pred             HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCCh
Confidence               345677888888888765 5677778888877888888888888888887764  2334555555554444555543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=1.1e-05  Score=58.82  Aligned_cols=192  Identities=12%  Similarity=0.042  Sum_probs=147.4

Q ss_pred             cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499           19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY   97 (262)
Q Consensus        19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (262)
                      ..+.++.++++..+.....      .....++. ..|..++-+....|+.+.|..+++++..+  ++-+..+-..-...+
T Consensus        25 ~rnseevv~l~~~~~~~~k------~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~l   96 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSK------SGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLL   96 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhh------hcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHH
Confidence            5677888888877754321      11133444 45666777888899999999999999986  444444444444456


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK  177 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  177 (262)
                      -..|++++|+++|+.+.+.+ |.|..++---+...-..|+.-+|++-+....+..+.|...|.-+...|...|++++|.-
T Consensus        97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f  175 (289)
T KOG3060|consen   97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF  175 (289)
T ss_pred             HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence            67899999999999999887 77778888778888888998899999999999888999999999999999999999999


Q ss_pred             HHHHHHHCCCCCchHHHHHHHHHHHhhC---CHHHHHHHHHHHHHh
Q 037499          178 VFDEMLKRRLQPTLVTFGTLIYGLCLEL---RVDEALKLKEDMMRV  220 (262)
Q Consensus       178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~  220 (262)
                      .++++.-.. +.++..+..+...+.-.|   +.+-+.++|.+..+.
T Consensus       176 ClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  176 CLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            999999863 234555566665555444   566678888888754

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.75  E-value=2.3e-08  Score=50.55  Aligned_cols=34  Identities=38%  Similarity=0.663  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC
Q 037499          229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA  262 (262)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd~  262 (262)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6888888888888888888888888888888874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=6.2e-06  Score=60.47  Aligned_cols=160  Identities=16%  Similarity=0.096  Sum_probs=112.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      +......-...|.+.+++++|++......       +......=...+.+..+++.|.+.+++|.+.   .+..|.+-|.
T Consensus       107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA  176 (299)
T KOG3081|consen  107 NLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLA  176 (299)
T ss_pred             hHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHH
Confidence            33344444567888889999988887622       2222333345566778888899999888874   3455666666


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          130 NAMLT----CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       130 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                      .++.+    .+...+|.-+|++|.+..+|++.+.+-...++...|++++|..+++....+... ++.+...+|.+-...|
T Consensus       177 ~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  177 QAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG  255 (299)
T ss_pred             HHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence            66554    456888899999998877788888888888888999999999999988887543 5667777776666666


Q ss_pred             CHHH-HHHHHHHHHHh
Q 037499          206 RVDE-ALKLKEDMMRV  220 (262)
Q Consensus       206 ~~~~-a~~~~~~~~~~  220 (262)
                      ...+ ..+.+.++...
T Consensus       256 kd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  256 KDAEVTERNLSQLKLS  271 (299)
T ss_pred             CChHHHHHHHHHHHhc
Confidence            6544 45566666543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.72  E-value=4e-06  Score=68.53  Aligned_cols=237  Identities=12%  Similarity=0.073  Sum_probs=181.8

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      |.....+.=+.-+...+++...+++.+.+           +..++-...+.....-.+...|+-++|......-...  -
T Consensus         5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~i-----------L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d   71 (700)
T KOG1156|consen    5 PKENALFRRALKCYETKQYKKGLKLIKQI-----------LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--D   71 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--C
Confidence            33334444444555688888888888888           3455556667777777788889999999998887763  3


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      .-+...|+.+.-.+-..+++++|++.|......+ +.|...+.-+.-.=++.|+++..........+..+.....|..++
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A  150 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA  150 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence            5667788988888888899999999999999877 777888888877778889999999998888887777888999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCC-CCCchHHHHHHH------HHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLI------YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG  236 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  236 (262)
                      .++.-.|++..|..+++...+.. ..|+...|....      ....+.|..++|.+.+..-...  +.-....-.+-...
T Consensus       151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l  228 (700)
T KOG1156|consen  151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL  228 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence            99999999999999999998874 356666665443      2345678888888887766542  22233333445566


Q ss_pred             HHhcCChhHHHHHHHHHHHc
Q 037499          237 LCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       237 ~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +.+.++.++|..++..++..
T Consensus       229 ~~kl~~lEeA~~~y~~Ll~r  248 (700)
T KOG1156|consen  229 LMKLGQLEEAVKVYRRLLER  248 (700)
T ss_pred             HHHHhhHHhHHHHHHHHHhh
Confidence            88999999999999999874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.71  E-value=2.8e-06  Score=58.40  Aligned_cols=115  Identities=17%  Similarity=0.067  Sum_probs=57.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch--HHHHHHHHHHHhhCCHHH
Q 037499          135 CGKIDRMTDLFQIMEKYVSPD---ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL--VTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       135 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~  209 (262)
                      .++...+...++.+....+.+   ....-.+...+...|++++|...|+........|+.  .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            455555555555555544422   222233445555556666666666665554322211  122334455555666666


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE  252 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (262)
                      |+..++...   +-......+......|.+.|+.++|...|+.
T Consensus       104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666664432   1122333444555566666666666666554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.71  E-value=1.2e-06  Score=69.41  Aligned_cols=127  Identities=14%  Similarity=0.155  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...-.+++..+...++++.|+.+|+++.+..   |+.  ...+++.+...++-.+|.+++++..+.. +.+......-..
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~  242 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE  242 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3444556677777888999999999888753   553  4457777778888888888888888654 556666666677


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML  183 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  183 (262)
                      .+.+.++++.|+.+.+++....|.+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus       243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            78888889999999988888877778888899999999999999988887764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.69  E-value=2.8e-05  Score=63.94  Aligned_cols=203  Identities=13%  Similarity=0.072  Sum_probs=136.5

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT------   81 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------   81 (262)
                      .|-.++..|...|+.+.|..+|++...-+       -+.+..-..+|......=.+..+++.|+++++....-+      
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~-------y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~  461 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVP-------YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE  461 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCC-------ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence            36788899999999999999999985541       12222335678888888888899999999988775421      


Q ss_pred             ----CCCc------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           82 ----RVVP------EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        82 ----~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                          +.++      +..+|...+..-...|-++....+|+++.+..+ .++...-.....+-.+..++++.++|++-...
T Consensus       462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence                1111      133455566666677889999999999988764 33433333444455677788999999887776


Q ss_pred             CC-CCh-hHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCchHHHHHH--HHHHHhhCCHHHHHHHHHHHHH
Q 037499          152 VS-PDA-CSYNILMHGCVV---SRRLEDAWKVFDEMLKRRLQPTLVTFGTL--IYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       152 ~~-~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      .+ |+. ..|+..+.-+.+   .-.++.|..+|++..+ |++|...-+--|  ...=-+.|-...|+.++++...
T Consensus       541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            66 554 356666555543   3457899999999998 565543322222  1222245777788888887644

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=3.1e-06  Score=63.14  Aligned_cols=198  Identities=9%  Similarity=0.080  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH-HHHH
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL-LNAM  132 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~  132 (262)
                      +.+.+..+.+..++++|++++..-.++.  +.+....+.|..+|....++..|-..|+++...  .|...-|... ...+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            4456666778899999999999888863  447888999999999999999999999999875  4655555543 4667


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHH
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK  212 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  212 (262)
                      .+.+.+.+|+++...|......-..+...-....-..+++-.+..++++....|   +..+.+.......+.|+++.|.+
T Consensus        89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq  165 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence            788999999999998875421111111111222336788888888888776443   44455555556678999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499          213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM  260 (262)
Q Consensus       213 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p  260 (262)
                      -|+...+-.|..|- ..|+..+ +..+.|+.+.|+.+..+++++|++-
T Consensus       166 kFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~  211 (459)
T KOG4340|consen  166 KFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQ  211 (459)
T ss_pred             HHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence            99999887676654 4566554 4556788999999999999999863

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.69  E-value=2.2e-06  Score=68.05  Aligned_cols=124  Identities=11%  Similarity=0.090  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      .....|+..+...++++.|+++|+++.+..  |+  ....++..+...++..+|.+++.+.....+.+......-...+.
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344567777778889999999999998764  44  44557888888889999999999998877778888888888899


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          168 VSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      +.++++.|..+.+++.+.  .|+ ..+|..|..+|.+.|+++.|+..++.+
T Consensus       246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            999999999999999986  344 559999999999999999999888765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=4.3e-06  Score=62.41  Aligned_cols=224  Identities=16%  Similarity=0.037  Sum_probs=159.7

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      +...+..+.+..+++.|++++....+           ..+.+......+..+|....++..|-..++++...   .|...
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~E-----------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~   78 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELE-----------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELE   78 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHh-----------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHH
Confidence            56777778899999999999988743           33347788889999999999999999999999874   45554


Q ss_pred             HHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           89 IFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA--MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        89 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      -|.. -...+.+++.+..|+.+...|.+.   ++...-..-+.+  ....+++..+..++++....  .+..+.+...-.
T Consensus        79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCl  153 (459)
T KOG4340|consen   79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCL  153 (459)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchhe
Confidence            4432 345677889999999999888752   333222222222  34567888888888876532  344455555556


Q ss_pred             HHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-------------CH----
Q 037499          166 CVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-------------DA----  227 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~----  227 (262)
                      ..+.|+++.|.+-|+...+- |.. ....|+..+ +..+.|+++.|+++..++.++ |++-             |+    
T Consensus       154 lykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvg  230 (459)
T KOG4340|consen  154 LYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVG  230 (459)
T ss_pred             eeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhccc
Confidence            67999999999999998886 554 467888776 456689999999999998876 4432             11    


Q ss_pred             -----------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          228 -----------QVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       228 -----------~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                                 ..++.-...+.+.|+++.|.+-+-+|.
T Consensus       231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP  268 (459)
T KOG4340|consen  231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP  268 (459)
T ss_pred             chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence                       112222333557888888888777664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.68  E-value=3e-05  Score=63.74  Aligned_cols=28  Identities=11%  Similarity=-0.087  Sum_probs=24.2

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCC
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPN   35 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~   35 (262)
                      .|.+|+.-|.+.|.+++|.++|+.....
T Consensus       250 Lw~SLAdYYIr~g~~ekarDvyeeai~~  277 (835)
T KOG2047|consen  250 LWCSLADYYIRSGLFEKARDVYEEAIQT  277 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            4788999999999999999999886443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.67  E-value=6e-08  Score=48.64  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499          228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEM  260 (262)
Q Consensus       228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p  260 (262)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            478888888888888888888888888888877

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.65  E-value=8.1e-05  Score=56.89  Aligned_cols=230  Identities=13%  Similarity=0.041  Sum_probs=170.1

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      ...|+..+...|++..|+..|....+           +.+.+..++.--...|...|+-..|+.=+....+.   +||-.
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve-----------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~  106 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVE-----------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFM  106 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHc-----------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHH
Confidence            45678888899999999999999833           54555556666667889999999999999988874   57643


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--Chhh------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           89 -IFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKS------------FNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        89 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                       .-..-...+.+.|.+++|..-|+..++..-..  ...+            ....+..+..+|+...|++....+.+..+
T Consensus       107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~  186 (504)
T KOG0624|consen  107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP  186 (504)
T ss_pred             HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence             23334567789999999999999998764111  1111            12234455678999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHH----
Q 037499          154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV----  229 (262)
Q Consensus       154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----  229 (262)
                      .|...+..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...++..   .+.||...    
T Consensus       187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~  262 (504)
T KOG0624|consen  187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPF  262 (504)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHH
Confidence            999999999999999999999998888877763 3456666667788889999999999988887   45776542    


Q ss_pred             HHHH---------HHHHHhcCChhHHHHHHHHHHHc
Q 037499          230 FASL---------IKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       230 ~~~l---------~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      |..|         +......++|.++++-.+...+.
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~  298 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN  298 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            2111         12234556677777776666553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=6.8e-05  Score=54.80  Aligned_cols=186  Identities=13%  Similarity=0.098  Sum_probs=142.6

Q ss_pred             CChhHHHHHHHHHHhcC--C-CCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 037499           65 KMFDEVQQILHQLKHDT--R-VVPEEI-IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR  140 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  140 (262)
                      .+.++.++++.++....  | ..++.+ .|-.++-+....++.+.|...++.+.+.- +-+..+-..-.-.+-..|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            56788888888876543  3 445654 45667778888999999999999988763 3333333333334556899999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       141 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      |+++++.+.+.++.|..++-.-+......|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.++++.- 
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-  182 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL-  182 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence            999999999999999999988888888888888888888888876 566999999999999999999999999999984 


Q ss_pred             cCCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHH
Q 037499          221 YNVKP-DAQVFASLIKGLCAVG---ELSLALGFKEEMVR  255 (262)
Q Consensus       221 ~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~  255 (262)
                        +.| ++..+..+.+.+.-.|   +...+..+|.+.++
T Consensus       183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence              344 5556666666554433   56677778877765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.63  E-value=7.1e-06  Score=56.41  Aligned_cols=114  Identities=11%  Similarity=0.039  Sum_probs=47.7

Q ss_pred             cCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKI  138 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~  138 (262)
                      .++...+...++.+.+..  +.+   ....-.+...+...|++++|...|+........++  ......+...+...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            444555555555554432  222   12222233444455555555555555544331111  11222334444445555


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 037499          139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD  180 (262)
Q Consensus       139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  180 (262)
                      ++|+..++.... .......+......|.+.|++++|...|+
T Consensus       102 d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen  102 DEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            555555433211 11333344444455555555555555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.61  E-value=2e-05  Score=60.11  Aligned_cols=186  Identities=12%  Similarity=0.123  Sum_probs=80.2

Q ss_pred             cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD  143 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  143 (262)
                      .|+...|+..+..+.+-  .+-+...+..-..+|...|.+..|+.-+....+.. ..+..++-.+-..+...|+.+.++.
T Consensus       168 ~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~  244 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLK  244 (504)
T ss_pred             CCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHH
Confidence            34444444444444442  23344444444444444444444444444443332 2233333334444444444444444


Q ss_pred             HHHHHHhcCCCChhHHH---HH---------HHHHHhcCChhHHHHHHHHHHHCCCCCchHH---HHHHHHHHHhhCCHH
Q 037499          144 LFQIMEKYVSPDACSYN---IL---------MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT---FGTLIYGLCLELRVD  208 (262)
Q Consensus       144 ~~~~~~~~~~~~~~~~~---~l---------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~  208 (262)
                      ..++..+.++.....|.   .+         +......++|.++.+..+...+.........   +..+-.++...|++.
T Consensus       245 ~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~  324 (504)
T KOG0624|consen  245 EIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG  324 (504)
T ss_pred             HHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence            44444443321111110   00         0111223334444444444443322211111   222334444555666


Q ss_pred             HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          209 EALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       209 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +|++...++.+   +.|+ +.++.-=..+|.-...++.|++=|+...+
T Consensus       325 eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  325 EAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            66666666653   2443 55555555566666666666666665554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.4e-05  Score=64.92  Aligned_cols=219  Identities=12%  Similarity=0.084  Sum_probs=137.4

Q ss_pred             HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499           12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC   91 (262)
Q Consensus        12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   91 (262)
                      =++.+.+.|++++|++....+.           ...+.+...+..-+-++.+.++|++|+.+.+.-..   ...+...+.
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil-----------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~f   83 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKIL-----------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFF   83 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHH-----------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhH
Confidence            3455667899999999999984           35566777888888889999999999966554432   112222222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHhc
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA--CSYNILMHGCVVS  169 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~  169 (262)
                      .-..+..+.+..++|++.++-..    +.+..+...-...+.+.|++++|+.+|+.+.+.+.++.  ..-..++.+-.. 
T Consensus        84 EKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-  158 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-  158 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-
Confidence            33455668899999999988322    22334666667788899999999999999977665332  222233222111 


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHHHHH---HHHHHhhCCHHHHHHHHHHHHHh----c--CCCC------CH-HHHHHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTFGTL---IYGLCLELRVDEALKLKEDMMRV----Y--NVKP------DA-QVFASL  233 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~----~--~~~p------~~-~~~~~l  233 (262)
                            ... +.+......| ..+|..+   ...+...|++.+|+++++...+.    .  +-.-      .. ..-.-|
T Consensus       159 ------l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl  230 (652)
T KOG2376|consen  159 ------LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL  230 (652)
T ss_pred             ------hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence                  111 1122222233 2344433   34566789999999999988321    0  0000      11 122334


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcC
Q 037499          234 IKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      .-++-..|+.++|.+++...++..
T Consensus       231 ayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  231 AYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHhc
Confidence            456678999999999999988763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.60  E-value=1.9e-05  Score=68.63  Aligned_cols=201  Identities=10%  Similarity=0.057  Sum_probs=141.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----------
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN-----------  117 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------  117 (262)
                      .+...|..|+..+...+++++|.++.+...+..  +-....|..+...+.+.++...+..+  .+...-           
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            467889999999999999999999999877643  33334444444466666666555544  222211           


Q ss_pred             -------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---
Q 037499          118 -------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL---  187 (262)
Q Consensus       118 -------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---  187 (262)
                             ..-+..++..+..+|-+.|+.++|..+|+++.+..+.|+.+.|.+...|+.. ++++|.+++.+....-+   
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~k  183 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKK  183 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhh
Confidence                   1123357778888999999999999999999999999999999999999999 99999999998876411   


Q ss_pred             CCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          188 QPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       188 ~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +++  ...|..++  .+...+++.-.++.+.+....+..--+.++..+-..|...++++++..+++.+.+.
T Consensus       184 q~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        184 QYVGIEEIWSKLV--HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH  252 (906)
T ss_pred             cchHHHHHHHHHH--hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence            000  11122221  12234444555555555544344444566777778899999999999999999873

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.60  E-value=1.7e-05  Score=66.26  Aligned_cols=236  Identities=12%  Similarity=0.015  Sum_probs=154.1

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      ++..|..|.-++.+.|+++.+.+.|++..           +..--....|+.+...+...|.-..|+.+++.-.....-+
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~-----------~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p  390 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQAL-----------PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP  390 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence            34456777788888999999999998873           3444466788888888888998888888888776542223


Q ss_pred             ccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhc--C--CCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 037499           85 PEEIIFCNVISFYG-RARLLEHALQVFDEMSSF--N--VQRTVKSFNTLLNAMLTC-----------GKIDRMTDLFQIM  148 (262)
Q Consensus        85 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~  148 (262)
                      ++...+-..-..|. +.+.+++++.+-.+....  +  -......|..+.-+|...           ....+++..+++.
T Consensus       391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a  470 (799)
T KOG4162|consen  391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA  470 (799)
T ss_pred             CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence            34444444444444 456677777776666541  1  012334555555555432           2345777788888


Q ss_pred             HhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499          149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ  228 (262)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~  228 (262)
                      .+.++.|+.+...+.--|+-.++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....+|..  ..
T Consensus       471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~  548 (799)
T KOG4162|consen  471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HV  548 (799)
T ss_pred             HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hh
Confidence            7777755555555555667788899999999998888666788888888888888899999999988887764432  11


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          229 VFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      ....-+..=...++.++++.....+
T Consensus       549 l~~~~~~i~~~~~~~e~~l~t~~~~  573 (799)
T KOG4162|consen  549 LMDGKIHIELTFNDREEALDTCIHK  573 (799)
T ss_pred             hchhhhhhhhhcccHHHHHHHHHHH
Confidence            1111122222355555555554444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.58  E-value=2.2e-06  Score=53.80  Aligned_cols=17  Identities=12%  Similarity=0.139  Sum_probs=6.4

Q ss_pred             HHhcCChhHHHHHHHHH
Q 037499           61 LGRAKMFDEVQQILHQL   77 (262)
Q Consensus        61 ~~~~~~~~~a~~~~~~~   77 (262)
                      +...|++++|...+++.
T Consensus        10 ~~~~~~~~~A~~~~~~~   26 (100)
T cd00189          10 YYKLGDYDEALEYYEKA   26 (100)
T ss_pred             HHHHhcHHHHHHHHHHH
Confidence            33333333333333333

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.58  E-value=7.4e-05  Score=60.30  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499          156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI  234 (262)
Q Consensus       156 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  234 (262)
                      +.+|..+++.-.+...+..|..+|.+.++.+..+ ++.++.+++..+| +++..-|.++|+-=.+.+|-.|  .--...+
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~Yl  442 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYL  442 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHH
Confidence            4567778888888889999999999999987777 6778888887766 6888899999988777544333  3334556


Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          235 KGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      .-+...|+-..+..+|++....++.||
T Consensus       443 dfL~~lNdd~N~R~LFEr~l~s~l~~~  469 (656)
T KOG1914|consen  443 DFLSHLNDDNNARALFERVLTSVLSAD  469 (656)
T ss_pred             HHHHHhCcchhHHHHHHHHHhccCChh
Confidence            667778888888888888888866654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.57  E-value=0.00012  Score=62.37  Aligned_cols=227  Identities=13%  Similarity=0.044  Sum_probs=148.6

Q ss_pred             HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 037499           16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS   95 (262)
Q Consensus        16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   95 (262)
                      ....+++.+|+.....+.+.         .|..+-..++.+  -...+.|+.++|..+++......  ..|..|...+-.
T Consensus        19 ~ld~~qfkkal~~~~kllkk---------~Pn~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~   85 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK---------HPNALYAKVLKA--LSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQN   85 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH---------CCCcHHHHHHHH--HHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHH
Confidence            34578888888888887443         122222222222  24567899999998888887643  337888899999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC----
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR----  171 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  171 (262)
                      +|...++.++|..+|++..+.  .|+......+..+|.+.+.+.+-.++--++-+..+.++..+-++++...+.-.    
T Consensus        86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~  163 (932)
T KOG2053|consen   86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE  163 (932)
T ss_pred             HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence            999999999999999999876  46677777788888888887776666656655555555555566655543321    


Q ss_pred             ------hhHHHHHHHHHHHCC-CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499          172 ------LEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS  244 (262)
Q Consensus       172 ------~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  244 (262)
                            ..-|.+.++.+.+.+ .--+..-.-.....+...|++++|..++..-....-..-+...-+.-+..+...+++.
T Consensus       164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~  243 (932)
T KOG2053|consen  164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ  243 (932)
T ss_pred             cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence                  234666667776654 2223333333344556788999999998443332133334444455566677777777


Q ss_pred             HHHHHHHHHHHcC
Q 037499          245 LALGFKEEMVRNK  257 (262)
Q Consensus       245 ~a~~~~~~m~~~g  257 (262)
                      +..++..++...|
T Consensus       244 ~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  244 ELFELSSRLLEKG  256 (932)
T ss_pred             HHHHHHHHHHHhC
Confidence            7777777776654

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.57  E-value=1.2e-07  Score=47.79  Aligned_cols=33  Identities=39%  Similarity=0.776  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT  190 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  190 (262)
                      +|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455556666666666666666666655555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.57  E-value=6.6e-05  Score=67.44  Aligned_cols=242  Identities=13%  Similarity=0.069  Sum_probs=144.0

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCC--
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD---TRVV--   84 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~--   84 (262)
                      ..+...+...|++++|...++.......     ..........++..+...+...|+++.|...+++....   .+..  
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~-----~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMAR-----QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHh-----hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            4455666778888888888777643210     00011112234555666777888888888887766542   1111  


Q ss_pred             c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChh
Q 037499           85 P-EEIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQR--TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDAC  157 (262)
Q Consensus        85 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~  157 (262)
                      + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+...|++++|.+.++.......  ....
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~  649 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS  649 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence            1 22334455566667788888888887765421  111  223444456667778888888888877654311  1111


Q ss_pred             HH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCch---HHHHHHHHHHHhhCCHHHHHHHHHHHHHh---cCCCCC
Q 037499          158 SY-----NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRV---YNVKPD  226 (262)
Q Consensus       158 ~~-----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~p~  226 (262)
                      .+     ...+..+...|+.+.|...+............   ..+..+..++...|+.++|...+++....   .+..++
T Consensus       650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~  729 (903)
T PRK04841        650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD  729 (903)
T ss_pred             hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence            11     11224445578888888887665442111111   11345666788889999999999887653   122222


Q ss_pred             -HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          227 -AQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       227 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                       ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus       730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             235666677888999999999999888764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.56  E-value=8.8e-06  Score=62.38  Aligned_cols=131  Identities=11%  Similarity=0.116  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      .+|-.+++..-+.+..+.|..+|.+..+...+..+.  |...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence            356666777777767777777777776543222333  3333333 22245555677777766654 3555666666667


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSP---DACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      .+.+.++.+.|..+|++....-..   ....|...+..-.+.|+++.+..+.+++.+.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            667777777777777766655331   2346666676666777777777776666664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.55  E-value=3.1e-06  Score=67.57  Aligned_cols=121  Identities=12%  Similarity=0.138  Sum_probs=80.2

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH
Q 037499          119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG  195 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (262)
                      +.+......+++.+....+.+++..++.+.+....   .-..|..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            44555666666666666677777777776665532   223444577777777777777777777777777777777777


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499          196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV  240 (262)
Q Consensus       196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  240 (262)
                      .||..+.+.|++..|.++...|+.+ ....+..|+..-+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence            7777777777777777777776665 5555556655555555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.53  E-value=4e-06  Score=52.51  Aligned_cols=96  Identities=15%  Similarity=0.226  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      ++..+...+...|++++|.+++++..+.. +.+...+..+..++...|++++|.+.++......+.+..++..+...+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            35667788889999999999999998764 44557788889999999999999999999988777777889999999999


Q ss_pred             cCChhHHHHHHHHHHHC
Q 037499          169 SRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~  185 (262)
                      .|+++.|...+....+.
T Consensus        81 ~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          81 LGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHhHHHHHHHHHHHHcc
Confidence            99999999999988764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.52  E-value=1.1e-05  Score=53.33  Aligned_cols=104  Identities=10%  Similarity=-0.009  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCChhhHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQRTVKSFNTLL  129 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll  129 (262)
                      ++..++..+.+.|++++|.+.|..+.+...- +.....+..+..++.+.|+++.|.+.|+.+....  .+....++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3444555555566666666666555543100 1112344445555556666666666665555432  011123444455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDA  156 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~  156 (262)
                      .++.+.|+.++|...++.+....+.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            555555555555555555555444333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.52  E-value=2.4e-07  Score=46.39  Aligned_cols=32  Identities=31%  Similarity=0.678  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP  189 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  189 (262)
                      +|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.49  E-value=2e-05  Score=53.78  Aligned_cols=94  Identities=5%  Similarity=-0.026  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ..+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|.......+.|+..+-.+..++...|
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            334444445555555555555555443 3344445555555555555555555555555555555555555555555555


Q ss_pred             ChhHHHHHHHHHHHC
Q 037499          171 RLEDAWKVFDEMLKR  185 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~  185 (262)
                      +.+.|.+.|+..+..
T Consensus       118 ~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        118 NVCYAIKALKAVVRI  132 (157)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            555555555555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=6.6e-06  Score=62.87  Aligned_cols=205  Identities=13%  Similarity=0.147  Sum_probs=137.6

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----HHHHhcCChhHHHHHHHHHHhc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLII-----TKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      |..-..|+--|.+++++++|..+.+.+.            +..|.......+.     +-........-|.+.|+..-+.
T Consensus       285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~------------PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S  352 (557)
T KOG3785|consen  285 PEARLNLIIYYLNQNDVQEAISLCKDLD------------PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES  352 (557)
T ss_pred             hHhhhhheeeecccccHHHHHHHHhhcC------------CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence            3444567778889999999999999983            3334333322222     2222223455566666655443


Q ss_pred             CCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q 037499           81 TRVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY  159 (262)
Q Consensus        81 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  159 (262)
                       +..-| ..--..+.+++.-..+++.++-+++.+...-...|...+ .+.++++..|.+.+|+++|-.+......|..+|
T Consensus       353 -a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y  430 (557)
T KOG3785|consen  353 -ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILY  430 (557)
T ss_pred             -ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHH
Confidence             33322 222345566666677899999999988876544444444 478999999999999999988876555666666


Q ss_pred             H-HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHH-HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHH
Q 037499          160 N-ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF-GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF  230 (262)
Q Consensus       160 ~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  230 (262)
                      . .+.++|.+.+.++.|++++-.+...   .+..+. ..+.+-|.+.+.+--|.+.|+.+..   ..|++.-|
T Consensus       431 ~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnW  497 (557)
T KOG3785|consen  431 KSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENW  497 (557)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCcccc
Confidence            5 4578899999999999987665442   233433 3445678899999999999998864   45655443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.47  E-value=2e-05  Score=51.99  Aligned_cols=94  Identities=16%  Similarity=0.073  Sum_probs=39.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHH
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRT---VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP---DACSYNILMH  164 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~  164 (262)
                      ..++..+.+.|++++|.+.|..+.+.. +.+   ...+..+..++.+.|++++|...|+.+....+.   ....+..+..
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            334444444455555555554444321 111   123333444444444444444444444433221   1233444444


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 037499          165 GCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      ++.+.|++++|...++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.46  E-value=7e-06  Score=70.37  Aligned_cols=167  Identities=11%  Similarity=0.021  Sum_probs=106.5

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      .+.|..|+..|+...|..+|.+.|+...+           -...+...+......|++..+++.|..+.-...+......
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-----------LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~  560 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFE-----------LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA  560 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence            44566777777777777777777777633           2334667777777778888888777777333332211111


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      -..-|....-.|.+.++..+|...|+...+.. |-|...|..+..+|.++|++..|+++|.+.....|.+...---....
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~  639 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM  639 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence            12223334445667777777777777777665 55677777788888888888888888877766555444333333444


Q ss_pred             HHhcCChhHHHHHHHHHHH
Q 037499          166 CVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~  184 (262)
                      -+..|.+.++...+.....
T Consensus       640 ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  640 ECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHHhhhHHHHHHHHHHHHH
Confidence            4567777777777766554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.45  E-value=1.5e-05  Score=63.36  Aligned_cols=93  Identities=5%  Similarity=-0.038  Sum_probs=47.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499           58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK  137 (262)
Q Consensus        58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  137 (262)
                      ...+...|+++.|++.|.+..+..  +.+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            344444555555555555555432  3344445555555555555555555555555443 3344455555555555555


Q ss_pred             HHHHHHHHHHHHhcCC
Q 037499          138 IDRMTDLFQIMEKYVS  153 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~  153 (262)
                      +++|+..|+......+
T Consensus        86 ~~eA~~~~~~al~l~P  101 (356)
T PLN03088         86 YQTAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            5555555555554444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.45  E-value=8.2e-06  Score=62.54  Aligned_cols=143  Identities=12%  Similarity=0.114  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      .+|..+++..-+.+..+.|.++|.+..+.+ ..+..+|-.....-.. .++.+.|.++|+...+..+.+...|...+..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            468889999999999999999999998654 4455666666666444 56777799999999998889999999999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCch---HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      .+.++.+.|..+|++.... +.++.   ..|...+..=.+.|+.+.+.++.+++.+.   .|+......+++
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~  148 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSD  148 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHC
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHH
Confidence            9999999999999999876 33333   58999999999999999999999999875   444333444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.45  E-value=5.2e-06  Score=66.33  Aligned_cols=122  Identities=17%  Similarity=0.137  Sum_probs=73.5

Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSY  159 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~  159 (262)
                      .+.+......+++.+....+++.+..++.+....  ....-..|..++++.|.+.|..+++++++..=..-|. ||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3445555555666666666666666666666543  1112233455666667777777777766666666666 677777


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE  204 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  204 (262)
                      +.++..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777666666666655555555555555544443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.43  E-value=3.3e-05  Score=52.72  Aligned_cols=89  Identities=12%  Similarity=0.088  Sum_probs=42.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  210 (262)
                      .+...|++++|..+|+.+....+.+..-|..+..++-..|++++|+..|......++ .|+..+-.+..++...|+.+.|
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A  122 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA  122 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence            334445555555555555444444444455555555555555555555555444432 2344444444444555555555


Q ss_pred             HHHHHHHHHh
Q 037499          211 LKLKEDMMRV  220 (262)
Q Consensus       211 ~~~~~~~~~~  220 (262)
                      .+.|+.....
T Consensus       123 ~~aF~~Ai~~  132 (157)
T PRK15363        123 IKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHH
Confidence            5555544443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.43  E-value=5.4e-05  Score=53.68  Aligned_cols=92  Identities=7%  Similarity=-0.013  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      ...+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++.....+.+...+..+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            44677778888888999999999988876532221  3577888888888999999999988888776666777777788


Q ss_pred             HHHhcCChhHHHHH
Q 037499          165 GCVVSRRLEDAWKV  178 (262)
Q Consensus       165 ~~~~~g~~~~a~~~  178 (262)
                      .+...|+...+..-
T Consensus       115 ~~~~~g~~~~a~~~  128 (172)
T PRK02603        115 IYHKRGEKAEEAGD  128 (172)
T ss_pred             HHHHcCChHhHhhC
Confidence            88777775554433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.42  E-value=3.2e-05  Score=54.84  Aligned_cols=97  Identities=10%  Similarity=0.033  Sum_probs=75.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499           47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF  125 (262)
Q Consensus        47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  125 (262)
                      .......+..+...+...|++++|+..|++..+...-++ ....+..+..++.+.|++++|.+.+++..+.. +.+...+
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  109 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSAL  109 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence            334667788899999999999999999999986421122 24678899999999999999999999998864 4456777


Q ss_pred             HHHHHHHHhcCCHHHHHHH
Q 037499          126 NTLLNAMLTCGKIDRMTDL  144 (262)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~~  144 (262)
                      ..+..++...|+...+..-
T Consensus       110 ~~lg~~~~~~g~~~~a~~~  128 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGD  128 (172)
T ss_pred             HHHHHHHHHcCChHhHhhC
Confidence            7788888888875554433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.42  E-value=0.00048  Score=62.02  Aligned_cols=231  Identities=15%  Similarity=0.019  Sum_probs=145.8

Q ss_pred             HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----Cc--cH
Q 037499           15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-----VP--EE   87 (262)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~--~~   87 (262)
                      .+...|+++.+...++.+...          ....+..........+...|+++++...+........-     .+  ..
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~----------~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~  452 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWE----------VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA  452 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHH----------HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH
Confidence            344567777777776665211          01112223344555667789999999999887553110     11  12


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC--Chh
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SP--DAC  157 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~--~~~  157 (262)
                      .....+...+...|++++|...+++....--..+    ....+.+...+...|++++|...+++.....    .+  ...
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            2223344556688999999999998765311112    1244556667788999999999998876432    21  223


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-CCC--CH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQ--P-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP--DA  227 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~p--~~  227 (262)
                      +...+...+...|+++.|...+++....    +..  + ....+..+...+...|++++|...+.+...... ..+  ..
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  612 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL  612 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence            4566677888999999999998886652    211  1 123344555667778999999999988755311 112  23


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          228 QVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ..+..+...+...|+.++|.+.+.+...
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455566678889999999998888754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.42  E-value=2.3e-05  Score=62.24  Aligned_cols=105  Identities=10%  Similarity=0.034  Sum_probs=89.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL  172 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  172 (262)
                      ....+...|+++.|++.|++..+.. +.+...|..+..+|...|++++|+..+++.....+.+...|..+..+|...|++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            3556678899999999999999876 667788999999999999999999999999998888889999999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499          173 EDAWKVFDEMLKRRLQPTLVTFGTLIYG  200 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~  200 (262)
                      ++|...|++..+.+  |+.......+..
T Consensus        87 ~eA~~~~~~al~l~--P~~~~~~~~l~~  112 (356)
T PLN03088         87 QTAKAALEKGASLA--PGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            99999999999863  444444444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.42  E-value=1.5e-05  Score=56.26  Aligned_cols=82  Identities=10%  Similarity=-0.015  Sum_probs=53.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      ....+..+...+...|++++|+..|++.......+  ...++..+..++...|++++|+..++......+....++..+.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            35556667777777788888888887776543111  2246777777777777777777777777765555555555555


Q ss_pred             HHHH
Q 037499          164 HGCV  167 (262)
Q Consensus       164 ~~~~  167 (262)
                      ..+.
T Consensus       114 ~i~~  117 (168)
T CHL00033        114 VICH  117 (168)
T ss_pred             HHHH
Confidence            5555

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.42  E-value=1.5e-06  Score=53.73  Aligned_cols=82  Identities=12%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD  143 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  143 (262)
                      .|+++.|+.+++++.+.....++...+..+..+|.+.|++++|++++++ .+.+ +.+....-.+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            3556666666666665421111333444456666666666666666665 2221 1222333344556666666666666


Q ss_pred             HHHH
Q 037499          144 LFQI  147 (262)
Q Consensus       144 ~~~~  147 (262)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.37  E-value=4.5e-07  Score=44.27  Aligned_cols=30  Identities=37%  Similarity=0.630  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499          229 VFASLIKGLCAVGELSLALGFKEEMVRNKI  258 (262)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  258 (262)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            577777777777777777777777777664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.36  E-value=0.00048  Score=51.64  Aligned_cols=185  Identities=10%  Similarity=-0.019  Sum_probs=113.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF---CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN  126 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  126 (262)
                      +...+......+.+.|++++|++.|+.+....  +-+....   -.++.++.+.+++++|...+++..+..-.....-|.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            55555566677788899999999999998753  3333332   456778889999999999999888763111122333


Q ss_pred             HHHHHHHh--cC---------------C---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499          127 TLLNAMLT--CG---------------K---IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       127 ~ll~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  186 (262)
                      ..+.+.+.  .+               +   ..+|+..|+.+.+.-|              ...-..+|...+..+... 
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--------------~S~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--------------NSQYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--------------CChhHHHHHHHHHHHHHH-
Confidence            33333321  11               1   1234444444444322              222334444444444332 


Q ss_pred             CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       187 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                        .-..-+ .+.+.|.+.|.+..|+.-++.+.+.+.-.| .......++.+|...|..++|..+...+.
T Consensus       174 --la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 --LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             --HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence              111122 455678889999999999999887654333 44567778889999999999988776654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.0001  Score=63.83  Aligned_cols=209  Identities=12%  Similarity=0.053  Sum_probs=125.6

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      .|..|..++.+-.+.|.+.+|++-|-+.                .|+..|..++....+.|.|++-.+.+...++. .-.
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika----------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA----------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VRE 1165 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc----------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcC
Confidence            4566888888888888888888887666                16777888888888888888888888777664 334


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      |..  =+.||-+|++.++..+.++++       .-|+......+.+-|...|.++.|.-+|..+..        |..+..
T Consensus      1166 ~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~La~ 1228 (1666)
T KOG0985|consen 1166 PYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN--------FAKLAS 1228 (1666)
T ss_pred             ccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh--------HHHHHH
Confidence            444  356778888888876655443       135665666666666666666666666554432        455555


Q ss_pred             HHHhcCChhHHHHHHHHHH------------------------HCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          165 GCVVSRRLEDAWKVFDEML------------------------KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~------------------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .+...|+++.|...-++.-                        -.++.....-..-++..|-..|-+++.+.+++...  
T Consensus      1229 TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L-- 1306 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL-- 1306 (1666)
T ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--
Confidence            5555555555544433221                        11112223334455666666666666666665544  


Q ss_pred             cCCC-CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499          221 YNVK-PDAQVFASLIKGLCAVGELSLALGFKE  251 (262)
Q Consensus       221 ~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~  251 (262)
                       |+. .....|+-|.-.|.+- +.++..+.++
T Consensus      1307 -GLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1307 -GLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred             -chhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence             332 2334455555555544 3444444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.35  E-value=1.9e-06  Score=53.20  Aligned_cols=79  Identities=15%  Similarity=0.211  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037499          101 RLLEHALQVFDEMSSFNVQ-RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF  179 (262)
Q Consensus       101 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  179 (262)
                      |+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|..+++. .+.++.+......+..++.+.|++++|+++|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4444555555554443210 1222233344444455555555555444 2111122222223344444444444444444


Q ss_pred             H
Q 037499          180 D  180 (262)
Q Consensus       180 ~  180 (262)
                      +
T Consensus        82 ~   82 (84)
T PF12895_consen   82 E   82 (84)
T ss_dssp             H
T ss_pred             h
Confidence            3

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=6.6e-05  Score=57.61  Aligned_cols=199  Identities=12%  Similarity=0.068  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH-----HhcCCHHHHHHHHHHHhhcCCCCCh-hhHHH
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY-----GRARLLEHALQVFDEMSSFNVQRTV-KSFNT  127 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~  127 (262)
                      -..++--|.+.+++.+|..+.+++..   ..|-..+...+..+-     .......-|.+.|+-.-..+...|. .--.+
T Consensus       288 RlNL~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs  364 (557)
T KOG3785|consen  288 RLNLIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS  364 (557)
T ss_pred             hhhheeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence            33455577888999999988877642   345444433333221     1122345566666655555544443 34566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH-HHHHHHHhhCC
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG-TLIYGLCLELR  206 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~  206 (262)
                      +..++.-..++++++..+..++.-...|...-..+..+++..|++.+|+++|-++....++ |..+|. .|.++|.+.++
T Consensus       365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk  443 (557)
T KOG3785|consen  365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK  443 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence            7777778888999999998888766655555556888999999999999999877665555 455554 55678889999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499          207 VDEALKLKEDMMRVYNVKPDAQV-FASLIKGLCAVGELSLALGFKEEMVRNKIEM  260 (262)
Q Consensus       207 ~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p  260 (262)
                      ++.|+.++-.+.    .+.+..+ ...+..-|.+.+.+--|-..|+.+...+-.|
T Consensus       444 P~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  444 PQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             chHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            999988876552    2233333 3344567888888888888888887654433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.0004  Score=56.78  Aligned_cols=187  Identities=11%  Similarity=0.072  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA  131 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  131 (262)
                      ....+=++.+...+++++|.+...++..  ..+.+...+..-+-+..+.+.++.|+++.+.-...  ..+...+.--..+
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHH
Confidence            3444556778888999999999999997  34667778888888999999999999655433211  1111111122344


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH-HHhhCCHHHH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG-LCLELRVDEA  210 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a  210 (262)
                      ..+.++.++|+..++...   ..+..+...-...+-+.|++++|+.+|+.+.+.+..    .+..-+++ +...+-.-.+
T Consensus        89 ~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~  161 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV  161 (652)
T ss_pred             HHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH
Confidence            557899999999998332   244556666677888999999999999999887432    22222221 1111111111


Q ss_pred             HHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          211 LKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       211 ~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      . +.+..    ...|.  ...+......+...|++.+|+++++...
T Consensus       162 ~-~~q~v----~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~  202 (652)
T KOG2376|consen  162 Q-LLQSV----PEVPEDSYELLYNTACILIENGKYNQAIELLEKAL  202 (652)
T ss_pred             H-HHHhc----cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            1 22222    22332  2223333445678999999999999883

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.30  E-value=0.0004  Score=56.27  Aligned_cols=152  Identities=14%  Similarity=0.137  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 037499           67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLF  145 (262)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~  145 (262)
                      .+.....++++.....+.|+. +|...++.-.+..-+..|..+|.+..+.+..+ .+.++++++.-||. ++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            667777777777655455554 57788888889999999999999999887666 67788888877664 6778899999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      +--.+....++.--...+..+...++-..+..+|++....+..|+  ..+|..+|..=..-|+...+.++-+++...
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            887766556667777888999999999999999999998865554  468999999888999999999998887664

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.29  E-value=3e-05  Score=49.31  Aligned_cols=79  Identities=9%  Similarity=0.286  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCchHHHHHHHHHHHhhC--------CHHHHHHHHHHHHHhcCCCCCHHHH
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLEL--------RVDEALKLKEDMMRVYNVKPDAQVF  230 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~  230 (262)
                      ...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..        +.-+.+.+++.|... +++|+..+|
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY  107 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY  107 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence            3445555666788888888888888777 777888888777766542        344556777777766 788888888


Q ss_pred             HHHHHHHHh
Q 037499          231 ASLIKGLCA  239 (262)
Q Consensus       231 ~~l~~~~~~  239 (262)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            888877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=0.00032  Score=56.62  Aligned_cols=195  Identities=12%  Similarity=0.019  Sum_probs=128.9

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII   89 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   89 (262)
                      ..+++...+..++..|++.+......           . -+..-++....++...|.+.++...-....+.. - -...-
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el-----------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-r-e~rad  293 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALEL-----------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-R-ELRAD  293 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhH-----------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-H-HHHHH
Confidence            46788888999999999999887443           2 466667778888999988888777766655542 1 11122


Q ss_pred             HH-------HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH-------------------------HHHHHHHHhcCC
Q 037499           90 FC-------NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF-------------------------NTLLNAMLTCGK  137 (262)
Q Consensus        90 ~~-------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~g~  137 (262)
                      |+       .+..+|.+.++++.++++|.+.......|+...-                         ..-.+.+.+.|+
T Consensus       294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD  373 (539)
T ss_pred             HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence            22       2444667778899999999887654434432211                         112344556777


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      +..|++.|.++.+..|.|...|....-+|.+.|.+..|+.-.+...+.. ++....|..=..++....+++.|.+.|++.
T Consensus       374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888877777777777778888778888888877777777766652 122333443344445556777777777776


Q ss_pred             HH
Q 037499          218 MR  219 (262)
Q Consensus       218 ~~  219 (262)
                      .+
T Consensus       453 le  454 (539)
T KOG0548|consen  453 LE  454 (539)
T ss_pred             Hh
Confidence            64

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.25  E-value=1.6e-06  Score=42.22  Aligned_cols=28  Identities=43%  Similarity=0.703  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      +|++++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.25  E-value=0.00019  Score=47.24  Aligned_cols=87  Identities=13%  Similarity=0.068  Sum_probs=36.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhc
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP---DACSYNILMHGCVVS  169 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~  169 (262)
                      .++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|+.+++......+.   +......+..++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence            344444555555555555554443322  122333344444455555555555444433221   222222223344444


Q ss_pred             CChhHHHHHHHH
Q 037499          170 RRLEDAWKVFDE  181 (262)
Q Consensus       170 g~~~~a~~~~~~  181 (262)
                      |+.++|+..+-.
T Consensus        89 gr~~eAl~~~l~  100 (120)
T PF12688_consen   89 GRPKEALEWLLE  100 (120)
T ss_pred             CCHHHHHHHHHH
Confidence            555554444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.23  E-value=0.00034  Score=60.58  Aligned_cols=218  Identities=13%  Similarity=0.052  Sum_probs=149.1

Q ss_pred             ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 037499           21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA  100 (262)
Q Consensus        21 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  100 (262)
                      +...|+..|=+..+           -...=...|..|...|....+..+|.+.|+..-+-+  .-+......+...|++.
T Consensus       473 ~~~~al~ali~alr-----------ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~  539 (1238)
T KOG1127|consen  473 NSALALHALIRALR-----------LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEE  539 (1238)
T ss_pred             hHHHHHHHHHHHHh-----------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhcc
Confidence            35566666655422           223345678889999998889999999999888753  45566778888999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037499          101 RLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV  178 (262)
Q Consensus       101 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  178 (262)
                      .+++.|..+.-..-+.. +.-  ...|.-..-.|.+.++..+|..-|+......|.|...|..+..+|...|++..|.++
T Consensus       540 ~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv  618 (1238)
T KOG1127|consen  540 STWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV  618 (1238)
T ss_pred             ccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence            99999998843332221 111  122333444567788999999999999998889999999999999999999999999


Q ss_pred             HHHHHHCCCCCchHHHHHH--HHHHHhhCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499          179 FDEMLKRRLQPTLVTFGTL--IYGLCLELRVDEALKLKEDMMRVYN-----VKPDAQVFASLIKGLCAVGELSLALGFKE  251 (262)
Q Consensus       179 ~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  251 (262)
                      |.+....  .|+ .+|...  ...-+..|.+.+|...+..+...+.     ..--..++-.+...+...|-..+|.++++
T Consensus       619 F~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~e  695 (1238)
T KOG1127|consen  619 FTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFE  695 (1238)
T ss_pred             hhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            9988875  443 233322  2235678999999988887765421     11123344444455555555556666665


Q ss_pred             HHHH
Q 037499          252 EMVR  255 (262)
Q Consensus       252 ~m~~  255 (262)
                      +-++
T Consensus       696 ksie  699 (1238)
T KOG1127|consen  696 KSIE  699 (1238)
T ss_pred             HHHH
Confidence            5443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.21  E-value=0.0007  Score=47.40  Aligned_cols=133  Identities=11%  Similarity=0.016  Sum_probs=89.8

Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYN  160 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~  160 (262)
                      ..|+...-..|..+....|+..+|...|++...--+..|......+.++....+++..|...++.+-+..+  .++.+..
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            35666666677777888888888888888777655556666777777777778888888888877776655  5566667


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      .+.+.+...|.+..|+..|+.....-  |+...-......+.+.|+.+++..-+..+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            77777888888888888888877753  33333222333445666666554433333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.20  E-value=0.00014  Score=51.30  Aligned_cols=95  Identities=12%  Similarity=-0.028  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      ....|..+...+...|++++|+..|+.......-++ ...++..+..++...|++++|++.+++..... +....++..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            567788889999999999999999999976421111 24578899999999999999999999998764 4445566666


Q ss_pred             HHHHH-------hcCCHHHHHHHH
Q 037499          129 LNAML-------TCGKIDRMTDLF  145 (262)
Q Consensus       129 l~~~~-------~~g~~~~a~~~~  145 (262)
                      ...+.       ..|++++|+..+
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~  136 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWF  136 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHH
Confidence            66666       556655444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=0.00011  Score=62.47  Aligned_cols=216  Identities=11%  Similarity=0.092  Sum_probs=122.9

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      ...|..+++.+.+..+.+-|.-.+..|...++.. ........++ ..=....-...+.|.+++|..+|.+.++      
T Consensus       757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-AlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------  828 (1416)
T KOG3617|consen  757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-ALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------  828 (1416)
T ss_pred             hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH-HHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence            3568999999999999999998888885432200 0000000111 2222344455667889999999988876      


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----------hcCC--
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----------KYVS--  153 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~~--  153 (262)
                          |..|=+.|-..|.+++|.++-+.=-...+   ..||.....-+...++.+.|++.|++..          ...+  
T Consensus       829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~  901 (1416)
T KOG3617|consen  829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ  901 (1416)
T ss_pred             ----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence                23344556677888888887665443322   3456666666666777777777776531          1111  


Q ss_pred             --------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 037499          154 --------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP  225 (262)
Q Consensus       154 --------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p  225 (262)
                              .|...|.-........|+.+.|+.+|...++.         -.+++..|-.|+.++|-++-++-       -
T Consensus       902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~es-------g  965 (1416)
T KOG3617|consen  902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAEES-------G  965 (1416)
T ss_pred             HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhheeeEeeccCchHHHHHHHhc-------c
Confidence                    34455555566666778888888887765542         22333444444444444443221       1


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          226 DAQVFASLIKGLCAVGELSLALGFKEE  252 (262)
Q Consensus       226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (262)
                      |......|.+.|-..|++.+|..+|-+
T Consensus       966 d~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  966 DKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            223333444445555555555444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.19  E-value=8.4e-05  Score=62.38  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499           58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK  137 (262)
Q Consensus        58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  137 (262)
                      +.+......|..|+.+++.+..+.   ....-|..+...|...|+++.|.++|-+.-         .++-.|..|.+.|+
T Consensus       739 ieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence            334444445555555555444321   112223444444555555555554443221         12333444555555


Q ss_pred             HHHHHHHHH
Q 037499          138 IDRMTDLFQ  146 (262)
Q Consensus       138 ~~~a~~~~~  146 (262)
                      |+.|.++-+
T Consensus       807 w~da~kla~  815 (1636)
T KOG3616|consen  807 WEDAFKLAE  815 (1636)
T ss_pred             HHHHHHHHH
Confidence            555544433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.18  E-value=0.00036  Score=58.12  Aligned_cols=141  Identities=9%  Similarity=0.058  Sum_probs=91.1

Q ss_pred             CCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRAR-----LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC--------GKIDRMTDLFQIME  149 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~  149 (262)
                      .+.+...|...+++.....     +...|..+|++..+.. |-....|..+..++...        ++...+.+..+...
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            4556677777776644322     3668888888888764 33344555544433221        12334444444433


Q ss_pred             hc--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH
Q 037499          150 KY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA  227 (262)
Q Consensus       150 ~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~  227 (262)
                      ..  .+.+...|.++...+...|++++|...+++....+  |+...|..+...+...|+.++|...+++....   .|..
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L---~P~~  486 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL---RPGE  486 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCC
Confidence            32  33556777777777777888888888888888864  57778888888888888888888888888744   4544


Q ss_pred             HH
Q 037499          228 QV  229 (262)
Q Consensus       228 ~~  229 (262)
                      .+
T Consensus       487 pt  488 (517)
T PRK10153        487 NT  488 (517)
T ss_pred             ch
Confidence            44

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.18  E-value=0.00076  Score=51.96  Aligned_cols=200  Identities=12%  Similarity=0.066  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCCh
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDT---RVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSS----FNVQRTV  122 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~  122 (262)
                      ...|......|...+++++|.+.|.+...-.   +-+. -...|.....+|.+. ++++|.+.+++...    .| .++.
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~  112 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHH
Confidence            3456677888889999999999998775421   1111 233455666666554 99999999987653    45 3333


Q ss_pred             --hhHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----
Q 037499          123 --KSFNTLLNAMLTC-GKIDRMTDLFQIMEKY----VS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-----  188 (262)
Q Consensus       123 --~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----  188 (262)
                        ..+..+...|... |++++|++.|++..+.    +.  .-..++..+...+.+.|++++|.++|++....-..     
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence              4677788888888 9999999999887553    22  22456678889999999999999999998875322     


Q ss_pred             CchH-HHHHHHHHHHhhCCHHHHHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHhc--CChhHHHHHHHH
Q 037499          189 PTLV-TFGTLIYGLCLELRVDEALKLKEDMMRVY-NVKPD--AQVFASLIKGLCAV--GELSLALGFKEE  252 (262)
Q Consensus       189 ~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~--g~~~~a~~~~~~  252 (262)
                      .+.. .|...+-++...||...|.+.+++..... ++..+  ......|+.+|-..  ..++.++.-|+.
T Consensus       193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~  262 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS  262 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence            2222 22233335666899999999999986431 22223  34566777777543  345555554443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.15  E-value=0.00012  Score=46.61  Aligned_cols=80  Identities=15%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhcCCCCChhh
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRAR--------LLEHALQVFDEMSSFNVQRTVKS  124 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~  124 (262)
                      -...|..+...+++...-.+|+.+++. |+ .|+..+|+.++.+..+..        ++-..+.+|+.|...+++|+..+
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            334556666668888888888888775 67 778888888887766532        24456677778877778888888


Q ss_pred             HHHHHHHHHh
Q 037499          125 FNTLLNAMLT  134 (262)
Q Consensus       125 ~~~ll~~~~~  134 (262)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            8887776654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.15  E-value=0.00047  Score=57.45  Aligned_cols=137  Identities=12%  Similarity=0.051  Sum_probs=101.3

Q ss_pred             CCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--------hhHHHHHHHHHH
Q 037499          117 NVQRTVKSFNTLLNAMLTC-----GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR--------LEDAWKVFDEML  183 (262)
Q Consensus       117 ~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~m~  183 (262)
                      +.+.+...|...+.+....     +....|..+|++..+..+.+...|..+..++.....        +..+.+...+..
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            3466778999998875442     237799999999999888777777766555543322        233444444433


Q ss_pred             HC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          184 KR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       184 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .. ....+...|..+.-.....|++++|...+++....   .|+...|..+...|...|+.++|.+.+++....
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            32 12335567777766667789999999999999864   688889999999999999999999999998763

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.00061  Score=59.35  Aligned_cols=164  Identities=13%  Similarity=0.171  Sum_probs=92.1

Q ss_pred             HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      .++......+-+++|..+|+...-               +....+.++.   .-+..++|.+.-+...       .+.+|
T Consensus      1053 ~ia~iai~~~LyEEAF~ifkkf~~---------------n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vW 1107 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDM---------------NVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVW 1107 (1666)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHhcc---------------cHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHH
Confidence            445555566667777777766511               2333333332   1244555555444332       24457


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhc
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVS  169 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  169 (262)
                      +.+..+-.+.|.+.+|++-|-+.      .|+..|...++...+.|.|++-.+.+...++... |...  +.+|-+|++.
T Consensus      1108 sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred             HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence            77777777777777777665432      2455677777777788888877777776665444 4333  4566777777


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK  214 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  214 (262)
                      ++..+.++++.       .||......+..-|...|.++.|.-+|
T Consensus      1180 ~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1180 NRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred             chHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence            77665554432       234444444444444444444444333

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=7e-05  Score=56.06  Aligned_cols=101  Identities=11%  Similarity=0.124  Sum_probs=69.3

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA  175 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  175 (262)
                      -+.+.+++.+|+..|.+.++.. +.|.+-|..-..+|++.|.++.|++-.+.....++....+|..|..+|...|++++|
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            3456677777777777777764 455566666677777777777777777777776666677777777777777777777


Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHH
Q 037499          176 WKVFDEMLKRRLQPTLVTFGTLIY  199 (262)
Q Consensus       176 ~~~~~~m~~~~~~~~~~~~~~li~  199 (262)
                      .+.|++..+  +.|+-.+|..=+.
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHHHHH
Confidence            777777666  3455555554443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.12  E-value=0.00013  Score=54.68  Aligned_cols=131  Identities=16%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG  136 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  136 (262)
                      =..-+.+.++|.+|+..|.+..+-  .+-|+..|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccC
Confidence            345566779999999999999984  36678888899999999999999999999998876 556789999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCc
Q 037499          137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE---DAWKVFDEMLKRRLQPT  190 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~  190 (262)
                      ++++|++.|++..+..+.+...+..|=.+--+.+...   .+..-++.....|..|+
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd  220 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD  220 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence            9999999999999877766655555554444444444   33334443334444344

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.09  E-value=0.0012  Score=56.44  Aligned_cols=30  Identities=17%  Similarity=0.045  Sum_probs=20.2

Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          154 PDACSYNILMHGCVVSRRLEDAWKVFDEML  183 (262)
Q Consensus       154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  183 (262)
                      .|......+.+.|...|++.+|..+|.+..
T Consensus       965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  965 GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            345556667777777777777777776543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.0016  Score=48.25  Aligned_cols=131  Identities=11%  Similarity=0.040  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH-----
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL-----  128 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----  128 (262)
                      .+.++.++...+.+.-.+..+.+..+. .-+.++.....|++.-.+.|+.+.|..+|++..+..-..+..+.+.+     
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344555555556666666666666654 23445555566666666666666666666655443223333333222     


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      ...|.-+.++..|...+.+....++.|+...|.-.-+..-.|+..+|.+.++.|...
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            223334455555666665555555555555555444445556666666666666554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.07  E-value=3.8e-05  Score=45.32  Aligned_cols=59  Identities=10%  Similarity=0.049  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEM  113 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~  113 (262)
                      +|..+...+...|++++|+..|++..+..  +.+...+..+..++...| ++++|++.+++.
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            33344444444444444444444443321  223333333444444443 344444444333

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.07  E-value=3.7e-05  Score=44.75  Aligned_cols=53  Identities=11%  Similarity=0.071  Sum_probs=22.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      .+.+.|++++|++.|+++.+..  +-+...+..+..++.+.|++++|..+|+++.
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444444444444321  2233444444444444444444444444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.06  E-value=0.00027  Score=59.55  Aligned_cols=78  Identities=15%  Similarity=0.236  Sum_probs=39.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE  173 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  173 (262)
                      +.+...++.|.+|+.+++.+....  .-..-|..+.+-|...|+++.|.++|-+..        .++-.|.+|.+.|+|+
T Consensus       739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence            344445555666666655555432  122234445555555666666655554322        2344455555555555


Q ss_pred             HHHHHHHH
Q 037499          174 DAWKVFDE  181 (262)
Q Consensus       174 ~a~~~~~~  181 (262)
                      .|.++-.+
T Consensus       809 da~kla~e  816 (1636)
T KOG3616|consen  809 DAFKLAEE  816 (1636)
T ss_pred             HHHHHHHH
Confidence            55555433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.06  E-value=0.0024  Score=47.92  Aligned_cols=66  Identities=6%  Similarity=-0.075  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF---NTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      ...+-.....+.+.|++++|.+.|+++.... +-+..+.   -.+..++.+.+++++|...+++..+..|
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P  100 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP  100 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            3334445556677899999999999998753 3233332   4456788899999999999999988877

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.05  E-value=2.7e-05  Score=45.77  Aligned_cols=50  Identities=14%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      .|++++|+++|+++....+.+...+..+..+|.+.|++++|..+++.+..
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.04  E-value=0.0011  Score=43.70  Aligned_cols=108  Identities=8%  Similarity=-0.054  Sum_probs=78.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHH
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNT  127 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~  127 (262)
                      ...+..++-..|+.++|+.+|++.... |....  ...+..+.+.+...|++++|+.+|++.....  |+    ......
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f   80 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF   80 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH
Confidence            344667888899999999999999985 55544  4467778899999999999999999988652  33    223333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      +..++...|+.++|++.+-....   ++..-|..-|..|.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la---~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA---ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            44577889999999999876654   33335555555554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.02  E-value=3.4e-05  Score=45.38  Aligned_cols=53  Identities=9%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499           62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF  116 (262)
Q Consensus        62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  116 (262)
                      .+.|++++|+++|+++....  |-+..++..+..+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566666666666666542  445556666666666666666666666666654

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.00  E-value=0.0012  Score=50.90  Aligned_cols=167  Identities=13%  Similarity=0.083  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC--hh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSS----FNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIMEK----YVSPD--AC  157 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~--~~  157 (262)
                      .|......|-..+++++|.+.|.+..+    .+-+.. ...|.....+|.+. ++++|.+.+++...    .|.++  ..
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~  115 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK  115 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            345556666777777777777776532    221111 12344444555444 88888888776643    23322  34


Q ss_pred             HHHHHHHHHHhc-CChhHHHHHHHHHHHC----CC-CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC----CCCCH
Q 037499          158 SYNILMHGCVVS-RRLEDAWKVFDEMLKR----RL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN----VKPDA  227 (262)
Q Consensus       158 ~~~~l~~~~~~~-g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~  227 (262)
                      .+..+...|... |+++.|.+.|++..+.    |. ..-..++..+...+.+.|++++|.++|+++....-    ...+.
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            677788888888 9999999999988753    21 11134566778889999999999999999876421    11222


Q ss_pred             H-HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          228 Q-VFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       228 ~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      . .|...+-++...|+...|...+++....
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2 3334455777889999999999988653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.00093  Score=50.38  Aligned_cols=100  Identities=9%  Similarity=0.040  Sum_probs=72.1

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCchHHHH
Q 037499          119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR---RLEDAWKVFDEMLKRRLQPTLVTFG  195 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~  195 (262)
                      +-|...|-.|...|...|+.+.|...|.+..+..++++..+..+..++....   .-.++..+|+++...+. -|+.+..
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence            5567778888888888888888888888887777777777776666655443   24567778888777642 2556666


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          196 TLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       196 ~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      .|...+...|++.+|...|+.|.+
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHh
Confidence            666777788888888888888875

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.00  E-value=0.00016  Score=51.85  Aligned_cols=49  Identities=12%  Similarity=0.222  Sum_probs=27.5

Q ss_pred             CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHH
Q 037499          119 QRTVKSFNTLLNAMLT-----CGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCV  167 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~  167 (262)
                      ..+..+|..+++.|.+     .|..+=....+..|.+-|. .|..+|+.|++.+=
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP   98 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP   98 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence            3455566666666543     2445555555555555555 56666666666554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.98  E-value=5.5e-05  Score=44.03  Aligned_cols=47  Identities=15%  Similarity=0.174  Sum_probs=16.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE  181 (262)
Q Consensus       135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  181 (262)
                      .|++++|.+.|+.+.+..+.+...+..+..++...|++++|...|++
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.97  E-value=0.0057  Score=48.92  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      +|.+..+|..|+.-+..+|..++..++++++           ..+++.-..+|...++.-...+++..+..+|.+....
T Consensus        38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~-----------~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          38 NPTNILSYFQLIQYLETQESMDAEREMYEQL-----------SSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             CchhHHHHHHHHHHHhhhhhHHHHHHHHHHh-----------cCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            5778889999999999999999999999999           4577777788988888888888999999999888774

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.96  E-value=0.0095  Score=51.43  Aligned_cols=191  Identities=11%  Similarity=0.083  Sum_probs=130.7

Q ss_pred             HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499           15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI   94 (262)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   94 (262)
                      .+.+.|+.++|..+++.....           ...|..+...+-.+|.+.++.++|..+|+.....   .|+......+.
T Consensus        52 sl~r~gk~~ea~~~Le~~~~~-----------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lF  117 (932)
T KOG2053|consen   52 SLFRLGKGDEALKLLEALYGL-----------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLF  117 (932)
T ss_pred             HHHHhcCchhHHHHHhhhccC-----------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHH
Confidence            455899999999999988442           2238999999999999999999999999999975   47788888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC----------CHHHHHHHHHHHHhcC-C-CChhHHHHH
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG----------KIDRMTDLFQIMEKYV-S-PDACSYNIL  162 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~a~~~~~~~~~~~-~-~~~~~~~~l  162 (262)
                      .+|.+.+.+.+-.++--++-+. ++-+...+=++++.+.+.-          -..-|.+.++.+.+.+ . .+..-....
T Consensus       118 mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly  196 (932)
T KOG2053|consen  118 MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY  196 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence            9999998887655555555442 2333333333334433321          1234556666665544 3 333333344


Q ss_pred             HHHHHhcCChhHHHHHHHH-HHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          163 MHGCVVSRRLEDAWKVFDE-MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .......|.+++|++++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus       197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            4555678899999999943 333333334455556677788889999998888888875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.95  E-value=7.1e-05  Score=44.13  Aligned_cols=59  Identities=15%  Similarity=0.263  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIM  148 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~  148 (262)
                      +|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++.
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            34444444444444444444444444432 223334444444444444 344444444433

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.87  E-value=0.00085  Score=50.82  Aligned_cols=97  Identities=11%  Similarity=0.001  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCchHHHHHHH
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD---ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLI  198 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li  198 (262)
                      .|...+..+.+.|++++|...|+.+....+.+   ...+..+..+|...|++++|...|+.+.+.-.  ......+-.+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            45555555556677777777777777665522   35666777777777777777777777775411  11233444455


Q ss_pred             HHHHhhCCHHHHHHHHHHHHHh
Q 037499          199 YGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       199 ~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ..+...|+.++|.++|+++.+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            5666777777777777777764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.84  E-value=0.0012  Score=50.05  Aligned_cols=100  Identities=16%  Similarity=0.101  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 037499          157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASL  233 (262)
Q Consensus       157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l  233 (262)
                      ..|...+....+.|++++|...|+.+.+......  ...+-.+...|...|++++|...|+.+.+.+...| ....+..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            3455555555778999999999999998632211  35677788899999999999999999987633222 34456666


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHc
Q 037499          234 IKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ..++...|+.++|..+|+++++.
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            77888999999999999999874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.84  E-value=0.0056  Score=44.70  Aligned_cols=179  Identities=11%  Similarity=0.049  Sum_probs=105.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV-KSFNT  127 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~  127 (262)
                      +...+......+...|++.+|++.|+.+.....- +-.....-.++.++.+.|+++.|...++++.+.- |-+. .-+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHH
Confidence            4455666777888899999999999999875321 2234556678889999999999999999988753 2221 22222


Q ss_pred             HHHHHHhcC-------------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHH
Q 037499          128 LLNAMLTCG-------------KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF  194 (262)
Q Consensus       128 ll~~~~~~g-------------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (262)
                      .+.+.+...             ...+|...              +..++.-|=...-..+|...+..+...   .-..-+
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~--------------~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~  145 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEE--------------FEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL  145 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHH--------------HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHH--------------HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH
Confidence            222222111             11223333              344444444555555665555555442   111122


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 037499          195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLAL  247 (262)
Q Consensus       195 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~  247 (262)
                       .+...|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.+.
T Consensus       146 -~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  146 -YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             -HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             -HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence             2567788999999999999999887432222 245677888999999877543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0031  Score=47.64  Aligned_cols=102  Identities=9%  Similarity=0.011  Sum_probs=88.7

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCChhHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG---KIDRMTDLFQIMEKYVSPDACSYN  160 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~  160 (262)
                      +-|...|-.|...|...|+.+.|...|....+.. +++...+..+..++..+.   ...++..+|+++...++.|+.+..
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            5678889999999999999999999999998875 677777877777665443   467899999999999999999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~~~  186 (262)
                      -+...+...|++.+|...|+.|.+..
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            99999999999999999999999973

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.78  E-value=0.00075  Score=48.54  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCC
Q 037499          138 IDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRR  171 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~  171 (262)
                      .+-|++++++|+..|. ||..++..++..+.+.+.
T Consensus       119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            4455566666666555 666666666665554443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.78  E-value=0.00087  Score=44.54  Aligned_cols=54  Identities=19%  Similarity=0.183  Sum_probs=47.3

Q ss_pred             CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499          186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA  239 (262)
Q Consensus       186 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  239 (262)
                      ...|+..+..+++.+|+..|++..|.++++...+.++++.+..+|..|++-+..
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999988889999999875443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.76  E-value=0.002  Score=47.01  Aligned_cols=177  Identities=10%  Similarity=-0.010  Sum_probs=106.6

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH-
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE-   87 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-   87 (262)
                      ....+..+...|++++|.+.|+.+...-        +.-+.-......++.++.+.|+++.|...+++..+...-.|.. 
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRY--------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH---------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            4566778889999999999999996541        2223345667788999999999999999999998864222222 


Q ss_pred             HHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499           88 IIFCNVISFYGRA-----------RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA  156 (262)
Q Consensus        88 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  156 (262)
                      ..+-.+..++...           +...+|...               +..++.-|=.+....+|...+..+...   -.
T Consensus        80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~---la  141 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR---LA  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH---HH
T ss_pred             hHHHHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH---HH
Confidence            1222222222111           112233333               444455555556666666655555431   11


Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCchHHHHHHHHHHHhhCCHHHHH
Q 037499          157 CSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEAL  211 (262)
Q Consensus       157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~  211 (262)
                      ..--.+...|.+.|.+..|..-++.+.+.  +.+........++.+|.+.|..+.+.
T Consensus       142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            12234677788999999999999998886  22222345667778888888877543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.014  Score=47.58  Aligned_cols=180  Identities=8%  Similarity=-0.017  Sum_probs=128.8

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhcC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLI-------ITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      ++....++...|.+.+....-....+.+.           -...-|+.+       ..++.+.++++.++..|.+.....
T Consensus       260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-----------e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~  328 (539)
T KOG0548|consen  260 LNNIAAVYLERGKYAECIELCEKAVEVGR-----------ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH  328 (539)
T ss_pred             HHHHHHHHHhccHHHHhhcchHHHHHHhH-----------HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence            34556677777777776666655433211           122233333       335556788899999988876642


Q ss_pred             CCCccHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499           82 RVVPEEII-------------------------FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG  136 (262)
Q Consensus        82 ~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  136 (262)
                       ..|+...                         ...-.+.+.+.|++..|++.|.++++.. |-|...|.....+|.+.|
T Consensus       329 -Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~  406 (539)
T KOG0548|consen  329 -RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG  406 (539)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence             2333221                         1112456778899999999999999987 778899999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      .+..|++-.+...+..++....|..=..++....++++|.+.|++..+.+  |+..-+.--+.-|..
T Consensus       407 ~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  407 EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE  471 (539)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence            99999999988888878888888888888888899999999999999864  555544444444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.75  E-value=0.013  Score=46.44  Aligned_cols=186  Identities=13%  Similarity=0.110  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHh---cCCHHH
Q 037499           69 EVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN---VQRTVKSFNTLLNAMLT---CGKIDR  140 (262)
Q Consensus        69 ~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~  140 (262)
                      +..+.+..+..+-+  -..+..+...++-+|-...+++..+++.+.+...-   +.-+..+-....-++.+   .|+.++
T Consensus       121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~  200 (374)
T PF13281_consen  121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK  200 (374)
T ss_pred             HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence            33444445554321  11234445566667999999999999999998741   12223333344556667   899999


Q ss_pred             HHHHHHH-HHhcCCCChhHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH--
Q 037499          141 MTDLFQI-MEKYVSPDACSYNILMHGCVV---------SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD--  208 (262)
Q Consensus       141 a~~~~~~-~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--  208 (262)
                      |+.++.. +.....+++.++..+...|..         ....++|...|.+.-+.  .||...=-.++..+...|...  
T Consensus       201 Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~  278 (374)
T PF13281_consen  201 ALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFET  278 (374)
T ss_pred             HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccc
Confidence            9999999 555555999999998888753         22467788888877664  355433222333333333211  


Q ss_pred             --HHHHHH---HHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          209 --EALKLK---EDMMRVYN---VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       209 --~a~~~~---~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                        +..++-   ..+....|   -..+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus       279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              222222   22221213   2245667788899999999999999999999875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.73  E-value=0.0069  Score=42.62  Aligned_cols=148  Identities=16%  Similarity=0.055  Sum_probs=109.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhH
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLED  174 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~  174 (262)
                      +..+.=+++...+-..+-.+  ..|++..--.|..++.+.|+..+|...|++...... .|......+..+....+++..
T Consensus        65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~  142 (251)
T COG4700          65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA  142 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence            33344455444433322222  368888888899999999999999999999987666 888899999999999999999


Q ss_pred             HHHHHHHHHHCCC-CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499          175 AWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       175 a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  248 (262)
                      |...++++.+... .-++.+...+.+.+...|++.+|...|+.....   .|+...-......+.++|+.+++..
T Consensus       143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            9999999988632 112335566778899999999999999999864   5665544444455678887666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.73  E-value=0.00036  Score=47.98  Aligned_cols=57  Identities=23%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM  182 (262)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  182 (262)
                      ..++..+...|++++|..+.+.+....|.+...|..+|.+|...|+...|.++|+++
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            334444445555555555555555555555555555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.71  E-value=0.00043  Score=41.23  Aligned_cols=54  Identities=11%  Similarity=0.067  Sum_probs=25.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      .|.+.+++++|.++++.+....+.+...|.....++.+.|++++|.+.|+...+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.69  E-value=0.00053  Score=40.83  Aligned_cols=57  Identities=11%  Similarity=0.173  Sum_probs=29.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      .|.+.+++++|+++++.+...+ |.+...+.....++.+.|++++|.+.|+...+..+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            3445555555555555555543 34444555555555555555555555555554433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=97.68  E-value=0.0057  Score=40.34  Aligned_cols=140  Identities=9%  Similarity=0.133  Sum_probs=73.5

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK  177 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  177 (262)
                      .-.|.+++..++..+....   .+..-+|-++--....-+-+-..++++.+-+.  .|...          +|++.....
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki--FDis~----------C~NlKrVi~   77 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI--FDISK----------CGNLKRVIE   77 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG--S-GGG-----------S-THHHHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh--cCchh----------hcchHHHHH
Confidence            3457777777777777653   23444444444444444444444444444332  33332          233333333


Q ss_pred             HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      .+-.+-     .+...+...+.....+|+-+.-.+++..+.+  .-.+++.....+..+|.+.|+..++.+++.+..+.|
T Consensus        78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            222211     1344555666777788888888888877764  346677777778888888888888888888888877


Q ss_pred             CC
Q 037499          258 IE  259 (262)
Q Consensus       258 ~~  259 (262)
                      ++
T Consensus       151 ~k  152 (161)
T PF09205_consen  151 LK  152 (161)
T ss_dssp             -H
T ss_pred             hH
Confidence            63

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.66  E-value=0.0041  Score=50.81  Aligned_cols=134  Identities=16%  Similarity=0.108  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ....+.++..+.+.|..+.|+++-..-..+             .....+.|+++.|.++.++.      .+...|..|..
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~  355 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGD  355 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHH
Confidence            444666666777777777776664332221             33444667776666554332      24557777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  210 (262)
                      ...+.|+++-|.+.|.+...        |..++-.|.-.|+.++-.++.+.....|      -++....++...|+.++.
T Consensus       356 ~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c  421 (443)
T PF04053_consen  356 EALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC  421 (443)
T ss_dssp             HHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred             HHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence            77777777777777777654        5666666777777777666666666554      234444455556777776


Q ss_pred             HHHHHHH
Q 037499          211 LKLKEDM  217 (262)
Q Consensus       211 ~~~~~~~  217 (262)
                      .+++.+.
T Consensus       422 v~lL~~~  428 (443)
T PF04053_consen  422 VDLLIET  428 (443)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            6666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.61  E-value=0.02  Score=44.78  Aligned_cols=107  Identities=11%  Similarity=0.100  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      +.+.-+.-+...|+...|.++-.+.+   .|+...|...+.+++..++|++-..+...      +-++.-|..++.+|.+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~  249 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK  249 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence            34555666778888888888766653   49999999999999999999887776432      1246888999999999


Q ss_pred             hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 037499          204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK  250 (262)
Q Consensus       204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  250 (262)
                      .|+..+|.+++.++.           +..-+..|.+.|++.+|.+.-
T Consensus       250 ~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  250 YGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             CCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence            999999998887632           244456677888877776653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.006  Score=45.30  Aligned_cols=133  Identities=11%  Similarity=0.060  Sum_probs=103.7

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCc
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT----RVVP   85 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~   85 (262)
                      ..++..+...|.+.-.+++++.+...          ..+-++.....+++...+.|+.+.|...|+...+..    ++.-
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~----------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~  250 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKY----------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG  250 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHh----------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch
Confidence            45667777889999999999998653          335577888899999999999999999999776542    2333


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      ..-+..+....|.-++++..|...|.+....+ +.+....|.-.-+..-.|+..+|++.++.|....|
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            33344445556777889999999999998776 66777777777777788999999999999988655

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.58  E-value=0.0019  Score=44.42  Aligned_cols=58  Identities=12%  Similarity=0.195  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                      ...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+..+|+++|+.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            4445555566666666666666666554 555566666666666666666666666555

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.57  E-value=0.021  Score=43.93  Aligned_cols=229  Identities=15%  Similarity=0.116  Sum_probs=136.6

Q ss_pred             HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHHHhcC-ChhHHHHHHHHHHhc----C---C
Q 037499           16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-----LHYDLIITKLGRAK-MFDEVQQILHQLKHD----T---R   82 (262)
Q Consensus        16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~---~   82 (262)
                      ..++|+++.|..++.+.....        ....|+.     ..+..+.......+ +++.|...+++..+-    .   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~--------~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~   74 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLL--------NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK   74 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHH--------hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence            467899999999999985531        0222222     12333334444556 888888877766542    1   1


Q ss_pred             CCcc-----HHHHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037499           83 VVPE-----EIIFCNVISFYGRARLLE---HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP  154 (262)
Q Consensus        83 ~~~~-----~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  154 (262)
                      ..|+     ..++..++.+|...+..+   +|.++++.+.... +-...++..-+..+.+.++.+++.+++.+|......
T Consensus        75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~  153 (278)
T PF08631_consen   75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH  153 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc
Confidence            2233     346777888888877654   5666666675443 333556666678888899999999999999887654


Q ss_pred             ChhHHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCchH-HHHHH-HHH---HHhh------CCHHHHHHHHHHHHHh
Q 037499          155 DACSYNILMHGC---VVSRRLEDAWKVFDEMLKRRLQPTLV-TFGTL-IYG---LCLE------LRVDEALKLKEDMMRV  220 (262)
Q Consensus       155 ~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l-i~~---~~~~------g~~~~a~~~~~~~~~~  220 (262)
                      ....+..++..+   ... ....+...+..+....+.|... ....+ +..   ..+.      .+++....+++.+.+.
T Consensus       154 ~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~  232 (278)
T PF08631_consen  154 SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS  232 (278)
T ss_pred             ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH
Confidence            445555555555   333 3455666666666554555443 21111 111   1121      1255566666655554


Q ss_pred             cCCCCCHHHHH---HHH----HHHHhcCChhHHHHHHHHHH
Q 037499          221 YNVKPDAQVFA---SLI----KGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       221 ~~~~p~~~~~~---~l~----~~~~~~g~~~~a~~~~~~m~  254 (262)
                      .+.+.+..+-.   +++    ..+.+.++++.|.++|+-..
T Consensus       233 ~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  233 LGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44444544422   222    34567899999999998544

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=97.54  E-value=0.0091  Score=41.24  Aligned_cols=90  Identities=11%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE  173 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  173 (262)
                      ..-+...|++++|..+|.-+.-.+ +.+..-|..|..++-..+++++|+..|...-.....|+..+-....++...|+.+
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence            334456788888888888777655 4455556667777777788888888887776665666666667777788888888


Q ss_pred             HHHHHHHHHHH
Q 037499          174 DAWKVFDEMLK  184 (262)
Q Consensus       174 ~a~~~~~~m~~  184 (262)
                      .|+..|.....
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            88888877776

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0057  Score=48.11  Aligned_cols=96  Identities=11%  Similarity=0.010  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchH-HHHHHHHHH
Q 037499          123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV-TFGTLIYGL  201 (262)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~  201 (262)
                      .+++.+..++.+.+++.+|++.-.+.....+.|....-.-..++...|+++.|+..|+.+.+.  .|+-. +-+.++.+-
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK  335 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            356666677777777777777777777777777777777777777777777777777777764  33333 333343333


Q ss_pred             HhhCCHH-HHHHHHHHHHHh
Q 037499          202 CLELRVD-EALKLKEDMMRV  220 (262)
Q Consensus       202 ~~~g~~~-~a~~~~~~~~~~  220 (262)
                      .+..+.. ...++|..|...
T Consensus       336 ~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            3333333 335666666553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.49  E-value=0.0046  Score=52.06  Aligned_cols=30  Identities=17%  Similarity=0.001  Sum_probs=17.1

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNP   32 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~   32 (262)
                      .|.|..|..|+......-.++.|...|-+.
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc  718 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC  718 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence            355555666655555555555555555555

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.45  E-value=0.024  Score=47.01  Aligned_cols=161  Identities=17%  Similarity=0.128  Sum_probs=108.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChh------hHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVK------SFNTLLNAMLT----CGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      ++...+-.|+-+.+++.+.+..+.+--..+.      .|...+..++.    ....+.|.+++..+...-|.+....-.-
T Consensus       194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~  273 (468)
T PF10300_consen  194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE  273 (468)
T ss_pred             HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4455566789999999998876643222222      34444444433    4568899999999988654444444455


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCC---CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRR---LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK-GLC  238 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~-~~~  238 (262)
                      .+.+...|++++|.+.|++.....   .+.....+--+...+.-.++|++|.+.|.++.+.  -..+..+|..+.. ++.
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c~~  351 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAACLL  351 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            778889999999999999766421   1223344445566788899999999999999874  2345555555554 445


Q ss_pred             hcCCh-------hHHHHHHHHHHH
Q 037499          239 AVGEL-------SLALGFKEEMVR  255 (262)
Q Consensus       239 ~~g~~-------~~a~~~~~~m~~  255 (262)
                      ..|+.       ++|.++|.+...
T Consensus       352 ~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  352 MLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             hhccchhhhhhHHHHHHHHHHHHH
Confidence            67777       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.44  E-value=0.0039  Score=41.48  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHD--------------TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS-  114 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-  114 (262)
                      |..++..++.++++.|+.+....+++..-.-              ....|+..+..+++.+|+..+++..|+++.+... 
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            4567778888888888888888887655321              1233445555555555555555555555555443 


Q ss_pred             hcCCCCChhhHHHHHH
Q 037499          115 SFNVQRTVKSFNTLLN  130 (262)
Q Consensus       115 ~~~~~~~~~~~~~ll~  130 (262)
                      ..+++.+..+|..|+.
T Consensus        81 ~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLE   96 (126)
T ss_pred             HcCCCCCHHHHHHHHH
Confidence            2234444445555544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.44  E-value=0.0014  Score=39.58  Aligned_cols=64  Identities=22%  Similarity=0.269  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VK---PD-AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      .+|+.+...|...|++++|+..|++..+... ..   |+ ..++..+..+|...|++++|++++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3555666666666666666666666543211 11   11 34556666666677777777766666543

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.44  E-value=0.016  Score=48.64  Aligned_cols=192  Identities=15%  Similarity=0.104  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 037499           46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-----VISFYGRARLLEHALQVFDEMSSFNVQR  120 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~  120 (262)
                      +..|+...   +...++-.|++.+|-++|.+--...   .-...|+.     ..+-+...|..++-..+.++-.+  ...
T Consensus       630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr  701 (1081)
T KOG1538|consen  630 GETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WAR  701 (1081)
T ss_pred             CCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--Hhh
Confidence            44455543   4455666777777777776543210   01111111     22333344443333333222111  001


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHH----------HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499          121 TVKSFNTLLNAMLTCGKIDRMTDLFQ----------IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT  190 (262)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  190 (262)
                      +..-=......+...|+.++|..+.-          ...+....+..+...+...+.+...+.-|-++|..|-+.     
T Consensus       702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----  776 (1081)
T KOG1538|consen  702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----  776 (1081)
T ss_pred             hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence            11111223445556677666665431          112222255566666666667777888888888877543     


Q ss_pred             hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ-----------VFASLIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       191 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                          ..+++.....++|++|..+-++..   ...|++.           -|.-.-++|.+.|+..+|.++++++....
T Consensus       777 ----ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  777 ----KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             ----HHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence                246667778889999888887765   3345432           23445567888898889998888876543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.42  E-value=0.0013  Score=39.76  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEM  113 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~  113 (262)
                      +++.+..+|...|++++|+..|++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~a   31 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKA   31 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444444444444444443

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.42  E-value=0.017  Score=46.64  Aligned_cols=68  Identities=6%  Similarity=-0.170  Sum_probs=59.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499           46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSSF  116 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  116 (262)
                      ..+.+...|+.+..+|.+.|++++|+..|++..+.   .|+.    .+|.++..+|...|+.++|++.+++..+.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34557889999999999999999999999998874   3553    45899999999999999999999999875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.41  E-value=0.012  Score=47.50  Aligned_cols=103  Identities=13%  Similarity=-0.017  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-LHYDLIITKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      +|.++..+..++.+|.+.|++++|+..|+...+.         .+..+.. .+|+.+..+|...|++++|++.+++..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4667778999999999999999999999997442         1221111 46999999999999999999999999874


Q ss_pred             CCCCccHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhcCC
Q 037499           81 TRVVPEEIIFCNVIS--FYGRARLLEHALQVFDEMSSFNV  118 (262)
Q Consensus        81 ~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~  118 (262)
                      .  .+   .|..+..  .+...++.....++++.+.+.|.
T Consensus       142 s--n~---~f~~i~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        142 Y--NL---KFSTILNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             c--ch---hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            1  11   1221111  01122233456666666666663

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.41  E-value=0.037  Score=45.92  Aligned_cols=161  Identities=16%  Similarity=0.090  Sum_probs=109.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH-----HHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHH
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI-----IFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFN  126 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  126 (262)
                      .++....=.|+-+..++.+.+..+..++.-...     .|+..+..+..    ....+.|.++++.+.+.  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            334444456999999999998877554443322     34444443333    45678999999999986  57766665


Q ss_pred             HH-HHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHH-H
Q 037499          127 TL-LNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY-G  200 (262)
Q Consensus       127 ~l-l~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~  200 (262)
                      .. .+.+...|+.++|++.|+.......    .....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|.-+.. +
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence            54 4567788999999999997653221    334445566777888999999999999999863 334445544433 3


Q ss_pred             HHhhCCH-------HHHHHHHHHHHH
Q 037499          201 LCLELRV-------DEALKLKEDMMR  219 (262)
Q Consensus       201 ~~~~g~~-------~~a~~~~~~~~~  219 (262)
                      +...|+.       ++|.++|.++..
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHH
Confidence            4456777       888888887644

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.36  E-value=0.021  Score=44.70  Aligned_cols=110  Identities=10%  Similarity=0.013  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      +.+..|.-+...|+...|.++-.+..    .|+...|-..+.+++..++|++-..+...     .-++..|..++.+|.+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~  249 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLK  249 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHH
Confidence            45556677778899888888877765    68899999999999999999987775432     2456889999999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      .|+..+|..+..++          .+..-+..|.+.|++.+|.+.--+.
T Consensus       250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            99999999998872          1245667788999999998775444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.32  E-value=0.054  Score=42.81  Aligned_cols=223  Identities=13%  Similarity=0.045  Sum_probs=108.9

Q ss_pred             hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499           18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY   97 (262)
Q Consensus        18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (262)
                      -.|+++.|.+-|+.|...+           +.-..-...|.-...+.|..+.|.+.-+.....  -+--.+.+...+...
T Consensus       132 ~eG~~~~Ar~kfeAMl~dP-----------EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r  198 (531)
T COG3898         132 LEGDYEDARKKFEAMLDDP-----------ETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEAR  198 (531)
T ss_pred             hcCchHHHHHHHHHHhcCh-----------HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHH
Confidence            4677777777777774321           111122223333444556777777766666553  233455666677777


Q ss_pred             HhcCCHHHHHHHHHHHhhcC-CCCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 037499           98 GRARLLEHALQVFDEMSSFN-VQRTVK--SFNTLLNAMLT---CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR  171 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  171 (262)
                      +..|+++.|+++++.-+... +.+++.  .-..|+.+-..   .-+...|...-.+..+..+.-...-.....++.+.|+
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~  278 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN  278 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence            77777777777776544321 122211  11111111110   1122233333222222222111122333455666666


Q ss_pred             hhHHHHHHHHHHHCCCCCch-------------------------------HHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          172 LEDAWKVFDEMLKRRLQPTL-------------------------------VTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~-------------------------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ..++-.+++.+-+...+|+.                               .....+..+....|++..|..--+...  
T Consensus       279 ~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--  356 (531)
T COG3898         279 LRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--  356 (531)
T ss_pred             hhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--
Confidence            66666666666665444432                               222223333334444444444443333  


Q ss_pred             cCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHc
Q 037499          221 YNVKPDAQVFASLIKGLCA-VGELSLALGFKEEMVRN  256 (262)
Q Consensus       221 ~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~  256 (262)
                       ...|....|..|.+.-.. .|+-.++.+++.+.++.
T Consensus       357 -r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         357 -REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             -hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence             335666666666665443 47777777777766654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.0078  Score=44.96  Aligned_cols=98  Identities=12%  Similarity=0.069  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCChhhHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQRTVKSFNT  127 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~  127 (262)
                      .|+.-+ .+.+.|++..|...|....+.  .|-+   ...+..|..++...|+++.|..+|..+.+.-  .+--+.+.-.
T Consensus       144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHH-HHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            555555 455566688888888877764  2322   3345667778888888888888887776531  1112355666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      +..+..+.|+.++|..+|+++.+.-|
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            77777778888888888888777655

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.28  E-value=0.04  Score=44.32  Aligned_cols=145  Identities=15%  Similarity=0.213  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      .+|...++.-.+..-++.|..+|-++.+.| +.+++.++++++.-++ .|+..-|..+|+.-....+.++.--+..+..+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL  476 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL  476 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            345666777777778888888888888877 5677778888887665 46667788888765554444444446667777


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL  237 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  237 (262)
                      ...++-+.|..+|+..... +..+  ..+|..+|..-..-|+...+..+=+++...   .|...+......-|
T Consensus       477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry  545 (660)
T COG5107         477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRY  545 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHH
Confidence            7888888888888855543 2222  457888888777888888888777777643   45444444444333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.035  Score=44.05  Aligned_cols=156  Identities=10%  Similarity=0.027  Sum_probs=90.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhH----------HHHH
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACS----------YNIL  162 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~----------~~~l  162 (262)
                      .++...|++++|.+.--..++.. +.+....-.-..++-..++.+.|..-|++....++  .+..+          |..-
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence            34455677777776666555543 22332222222334456677777777777666554  12211          1222


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHC---CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKR---RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV---FASLIKG  236 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~  236 (262)
                      .+-..+.|++..|.+.|.+.+..   ++.|+...|.....+..+.|+.++|+.-.+...+     .|...   |..-..+
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-----iD~syikall~ra~c  330 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-----IDSSYIKALLRRANC  330 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-----cCHHHHHHHHHHHHH
Confidence            23345778888888888887764   3345555666666667777888888877776653     23322   2222345


Q ss_pred             HHhcCChhHHHHHHHHHHHc
Q 037499          237 LCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       237 ~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +...++|++|.+-++...+.
T Consensus       331 ~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            56677778887777776553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.24  E-value=0.0094  Score=44.55  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=38.5

Q ss_pred             hcCChhHHHHHHHHHHHCCC--CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChh
Q 037499          168 VSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELS  244 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  244 (262)
                      +.|++..|...|...++...  .-....+-.|..++...|++++|..+|..+.+.++-.|- +..+--|..+..+.|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            33445555555555444321  111223333444455555555555555554444333332 234444444444555555


Q ss_pred             HHHHHHHHHHH
Q 037499          245 LALGFKEEMVR  255 (262)
Q Consensus       245 ~a~~~~~~m~~  255 (262)
                      +|...|+++.+
T Consensus       233 ~A~atl~qv~k  243 (262)
T COG1729         233 EACATLQQVIK  243 (262)
T ss_pred             HHHHHHHHHHH
Confidence            55555554443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.023  Score=43.90  Aligned_cols=153  Identities=7%  Similarity=-0.079  Sum_probs=109.9

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCChhhHHHHHHHHHhcCCHH
Q 037499           63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF---NVQRTVKSFNTLLNAMLTCGKID  139 (262)
Q Consensus        63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~  139 (262)
                      ..|++.+|-..++++.++  .|.|...+...=.+|.-.|+.+.-...++++...   ++|........+.-++..+|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            356777777788888874  5778878887888888889998888888888754   22222333444455667889999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499          140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR---LQPTLVTFGTLIYGLCLELRVDEALKLKED  216 (262)
Q Consensus       140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  216 (262)
                      +|++.-++..+.++.|.-...+....+...|++.++.++..+-...-   .-.-...|-...-.+...+.++.|+.+|++
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            99999999888888888888888888888899999888876644321   111122333334455667899999998876


Q ss_pred             H
Q 037499          217 M  217 (262)
Q Consensus       217 ~  217 (262)
                      -
T Consensus       273 e  273 (491)
T KOG2610|consen  273 E  273 (491)
T ss_pred             H
Confidence            3

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.02  Score=45.16  Aligned_cols=62  Identities=10%  Similarity=-0.046  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      .+++.+..+|.+.+++..|++.-++....+ ++|....-.=..++...|+++.|...|+++.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            344555555555556655555555555543 23444444444555555666666666655553

>PRK15331 chaperone protein SicA; Provisional

Probab=97.17  E-value=0.038  Score=38.24  Aligned_cols=90  Identities=11%  Similarity=0.034  Sum_probs=75.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD  208 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  208 (262)
                      ..-+...|++++|..+|+-+.--++.+..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.+
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence            33456789999999999999888888888899999999999999999999998877643 24444555677899999999


Q ss_pred             HHHHHHHHHHH
Q 037499          209 EALKLKEDMMR  219 (262)
Q Consensus       209 ~a~~~~~~~~~  219 (262)
                      .|...|+....
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.13  E-value=0.038  Score=37.33  Aligned_cols=57  Identities=9%  Similarity=0.052  Sum_probs=29.4

Q ss_pred             HHhcCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           97 YGRARLLEHALQVFDEMSSFN--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        97 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      ..+.|++++|.+.|+.+...-  -+-...+-..++.+|.+.+++++|...+++..+..|
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            335566666666665555431  011233444455555556666666666555555544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.13  Score=44.12  Aligned_cols=222  Identities=14%  Similarity=0.093  Sum_probs=122.2

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---   81 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---   81 (262)
                      ...++..+++-....|+++.|..+++.-.....      .-+.-.+..-+...+.-+.+.|+.+....++-.+....   
T Consensus       506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~------qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s  579 (829)
T KOG2280|consen  506 PGISYAAIARRAYQEGRFELARKLLELEPRSGE------QVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS  579 (829)
T ss_pred             CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccc------hhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            446777888888899999999999987644321      11111244445667777888888888887776665531   


Q ss_pred             -------CCCccHHHHHHHHHH--------HHhcCCHHHHHHHH--HHHh----hcCCCCC-------------------
Q 037499           82 -------RVVPEEIIFCNVISF--------YGRARLLEHALQVF--DEMS----SFNVQRT-------------------  121 (262)
Q Consensus        82 -------~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~--~~~~----~~~~~~~-------------------  121 (262)
                             ..+.....|..+++-        +.+.++-.++...|  +...    ..|..|+                   
T Consensus       580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~k  659 (829)
T KOG2280|consen  580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAK  659 (829)
T ss_pred             HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHH
Confidence                   111222222222220        00111111111111  0000    0011111                   


Q ss_pred             ------------------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499          122 ------------------------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK  177 (262)
Q Consensus       122 ------------------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  177 (262)
                                              ..+.+--+.-+...|+..+|.++-.+.+   .||-..|-.-+.+++..++|++-++
T Consensus       660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLek  736 (829)
T KOG2280|consen  660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEK  736 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHH
Confidence                                    1122223333344455555555444332   2777777777788888888776665


Q ss_pred             HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499          178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE  251 (262)
Q Consensus       178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  251 (262)
                      +-+.++      ++.-|.-++.+|.+.|+.++|.+++-+...   ..       -...+|.+.|++.+|.++--
T Consensus       737 fAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  737 FAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHHH
Confidence            544332      255667788888888888888888766632   11       45667777888777766543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.08  E-value=0.072  Score=39.67  Aligned_cols=168  Identities=13%  Similarity=0.033  Sum_probs=98.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      .+..+..-+..-.+.|++++|.+.|+.+..+... +-...+.-.++.++.+.++++.|+..+++..+..-.....-|-..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            3445555666778889999999999999875422 223556667788888999999999999988765322222345555


Q ss_pred             HHHHHh-------cCCHHHHHHHHHHH---HhcCC-----CChhHH------------HHHHHHHHhcCChhHHHHHHHH
Q 037499          129 LNAMLT-------CGKIDRMTDLFQIM---EKYVS-----PDACSY------------NILMHGCVVSRRLEDAWKVFDE  181 (262)
Q Consensus       129 l~~~~~-------~g~~~~a~~~~~~~---~~~~~-----~~~~~~------------~~l~~~~~~~g~~~~a~~~~~~  181 (262)
                      |.+++.       ..+...+...|..+   ...-|     +|...-            ..+.+.|.+.|.+..|..-+++
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            555543       23444444444444   33322     121111            2344556666666666666666


Q ss_pred             HHHCCCCCc---hHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499          182 MLKRRLQPT---LVTFGTLIYGLCLELRVDEALKLKEDMM  218 (262)
Q Consensus       182 m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~  218 (262)
                      |.+. .+-+   ...+-.+..+|...|-.++|.+.-.-+.
T Consensus       193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            6665 2111   2334445556666666666666655553

>PRK11906 transcriptional regulator; Provisional

Probab=97.06  E-value=0.11  Score=42.25  Aligned_cols=164  Identities=14%  Similarity=0.101  Sum_probs=111.5

Q ss_pred             HHH--HHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHh
Q 037499           52 LHY--DLIITKLGRA-----KMFDEVQQILHQLKHDTRVVPE-EIIFCNVISFYGR---------ARLLEHALQVFDEMS  114 (262)
Q Consensus        52 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  114 (262)
                      ..|  ..++++....     ...+.|+.+|.+......+.|+ ...|..+..++..         .....+|.+.-++..
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5566655552     3466788899998843334454 3444444433322         234567778888888


Q ss_pred             hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCchHH
Q 037499          115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPTLVT  193 (262)
Q Consensus       115 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~  193 (262)
                      +.+ +.|..+...+..++.-.++++.|..+|++.....+....+|....-.+.-.|+.++|.+.+++..+..+ +.-...
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            877 778888888888888888899999999999998887777777777777889999999999999776522 112233


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      ....+..|+. ...++|++++-+-
T Consensus       411 ~~~~~~~~~~-~~~~~~~~~~~~~  433 (458)
T PRK11906        411 IKECVDMYVP-NPLKNNIKLYYKE  433 (458)
T ss_pred             HHHHHHHHcC-CchhhhHHHHhhc
Confidence            3344445654 4567777776443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.06  E-value=0.11  Score=41.24  Aligned_cols=202  Identities=14%  Similarity=0.084  Sum_probs=127.2

Q ss_pred             hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCccHH--HHHHH
Q 037499           18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIIT--KLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNV   93 (262)
Q Consensus        18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l   93 (262)
                      ..||-..|.++-.+...           -...|....-.++.  ...-.|+++.|.+-|+-|...    |...  -...|
T Consensus        96 gAGda~lARkmt~~~~~-----------llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgL  160 (531)
T COG3898          96 GAGDASLARKMTARASK-----------LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGL  160 (531)
T ss_pred             ccCchHHHHHHHHHHHh-----------hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHH
Confidence            46788888887776532           22234433333433  334469999999999999863    2222  23334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhH--HHHHHHHHH--
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACS--YNILMHGCV--  167 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~--~~~l~~~~~--  167 (262)
                      .-..-+.|+.+.|..+-+..-..- +.-...+...+...+..|+|+.|+++++.-+....  ++..-  -..++.+-.  
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s  239 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS  239 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence            444457789999998888876653 34457888999999999999999999987765543  33221  112222211  


Q ss_pred             -hcCChhHHHHHHHHHHHCCCCCchH-HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          168 -VSRRLEDAWKVFDEMLKRRLQPTLV-TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       168 -~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                       -..+...|...-.+..+  ..||.. .-.....++.+.|+..++-++++.+.+.   .|.+..+...+  +.+.|+
T Consensus       240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd  309 (531)
T COG3898         240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD  309 (531)
T ss_pred             HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC
Confidence             12345556666555555  345533 3334557789999999999999999975   56555543322  445555

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.05  E-value=0.041  Score=46.74  Aligned_cols=184  Identities=10%  Similarity=-0.007  Sum_probs=101.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH--------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII--------FCNVISFYGRARLLEHALQVFDEMSSFNVQ  119 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  119 (262)
                      .|.+..|..+.......-.++.|...|-+...-.|++.--..        -.+=+.+  --|++++|+++|-++-.+.+ 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL-  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL-  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence            468889999998888888888888888777654444322111        1111222  24889999999888765432 


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHH-------------HHH
Q 037499          120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDE-------------MLK  184 (262)
Q Consensus       120 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------------m~~  184 (262)
                              .+..+.+.|+|-.+.++++.-.....  .-...|+.+...+.....|+.|.+.|..             +..
T Consensus       766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~  837 (1189)
T KOG2041|consen  766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL  837 (1189)
T ss_pred             --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence                    23444555555555444433111100  1123344444444444444444433332             111


Q ss_pred             --------CCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          185 --------RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE  252 (262)
Q Consensus       185 --------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (262)
                              ...+-+....-.+..++...|.-++|.+.+-+..     .|     ...+..|...+++.+|.++-++
T Consensus       838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence                    1133355556667777777777777777664432     12     2234567777777777766544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=97.05  E-value=0.048  Score=37.10  Aligned_cols=128  Identities=13%  Similarity=0.182  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      ...++..+.+.+.+.....+++.+.+.+ ..+...++.++..|++.+. .+.++.+..  .   .+......+++.|.+.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~---~~~yd~~~~~~~c~~~   82 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--K---SNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c---cccCCHHHHHHHHHHc
Confidence            3457788888899999999999998887 4777889999999987643 444444442  1   3344456688888888


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA  239 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  239 (262)
                      +-++++..++.++..     .......++.   ..++++.|.+++.+.       .+...|..++..+..
T Consensus        83 ~l~~~~~~l~~k~~~-----~~~Al~~~l~---~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l~  137 (140)
T smart00299       83 KLYEEAVELYKKDGN-----FKDAIVTLIE---HLGNYEKAIEYFVKQ-------NNPELWAEVLKALLD  137 (140)
T ss_pred             CcHHHHHHHHHhhcC-----HHHHHHHHHH---cccCHHHHHHHHHhC-------CCHHHHHHHHHHHHc
Confidence            999999888887643     2233333332   227888888877652       256678888776654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.04  E-value=0.011  Score=46.85  Aligned_cols=133  Identities=17%  Similarity=0.135  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH----hcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCchH
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIME----KYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RL-QPTLV  192 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~  192 (262)
                      .|..|.+.|.-.|+++.|+..-+.-.    +-|.  .....+..+..++.-.|+++.|.+.|+.....    |- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34555555556688888877654322    2222  44567888999999999999999998875432    21 12334


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          193 TFGTLIYGLCLELRVDEALKLKEDMMRV----YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +..+|...|.-..+++.|+.++.+-..-    ....-....+.+|..+|...|..++|+.+.+.-++.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            5566788888888999999988765432    011224567889999999999999999877765543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.1  Score=40.51  Aligned_cols=155  Identities=9%  Similarity=-0.007  Sum_probs=115.1

Q ss_pred             HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHH
Q 037499           15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIF   90 (262)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~   90 (262)
                      .+...|.+.+|...++++           +..++-|...+.-.=.++.-.|+.......++++...  ..++.    .+.
T Consensus       112 i~~~~g~~h~a~~~wdkl-----------L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~  178 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKL-----------LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVH  178 (491)
T ss_pred             HhhccccccHHHHHHHHH-----------HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHH
Confidence            345577888888788887           5577789889888889999999999999999888753  23443    333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHH
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGC  166 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~  166 (262)
                      ....-++..+|-+++|++.-++..+.+ +.|..+-.+....+-..|+..++.+...+-...-.    .-..-|-...-.+
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~  257 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH  257 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence            344455668999999999999999887 67778888888999999999999998876554322    1112233334455


Q ss_pred             HhcCChhHHHHHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEML  183 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~  183 (262)
                      ...+.++.|+++|++=.
T Consensus       258 iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  258 IEGAEYEKALEIYDREI  274 (491)
T ss_pred             hcccchhHHHHHHHHHH
Confidence            66699999999997643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.11  Score=39.62  Aligned_cols=153  Identities=11%  Similarity=0.020  Sum_probs=98.3

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhH
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLED  174 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~  174 (262)
                      .....|++..|...|....... +-+...-..+..+|...|+.+.|..++..+..... ........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4556788888888888877654 44556677778888888888888888887765433 222222334555555555555


Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499          175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE  251 (262)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  251 (262)
                      ...+-++....  +-|...-..+...+...|+.+.|.+.+-.+.+...-.-|...-..|++.+.-.|.-+.+.--++
T Consensus       222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R  296 (304)
T COG3118         222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR  296 (304)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            55555555543  2255555566777888888888887766665543334466677788888887775554443333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.90  E-value=0.054  Score=35.87  Aligned_cols=89  Identities=12%  Similarity=0.074  Sum_probs=42.1

Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC---hhHHHHHHHHHHhcCCh
Q 037499           97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD---ACSYNILMHGCVVSRRL  172 (262)
Q Consensus        97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~  172 (262)
                      ....|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+..- .+   ...|..-...|...|+-
T Consensus        53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            344555555555555544432 33444555555555555555555555544433222 11   11222333445555555


Q ss_pred             hHHHHHHHHHHHCC
Q 037499          173 EDAWKVFDEMLKRR  186 (262)
Q Consensus       173 ~~a~~~~~~m~~~~  186 (262)
                      +.|..-|+...+.|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            55655555555544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.07  Score=46.16  Aligned_cols=181  Identities=14%  Similarity=0.046  Sum_probs=119.2

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      +...-+..+.+..-++-|+.+-+.-..           +...-..........+.+.|++++|...|-+...-  +.|..
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-----------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~  402 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHL-----------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE  402 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCC-----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH
Confidence            445567788888889999888877621           11112234455556667789999999988877652  44543


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                           +|.-|....+...-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.
T Consensus       403 -----Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~-~fd~e~al~Ilr  474 (933)
T KOG2114|consen  403 -----VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW-FFDVETALEILR  474 (933)
T ss_pred             -----HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce-eeeHHHHHHHHH
Confidence                 46667777777788888888888885 456666788999999999888777776654 2220 112345566666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      +.+-.+.|..+-.....     +......++   -..|++++|++++..+
T Consensus       475 ~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  475 KSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL  516 (933)
T ss_pred             HhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence            77777777666554433     333444443   3567788888877654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.88  E-value=0.045  Score=44.89  Aligned_cols=130  Identities=20%  Similarity=0.233  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      .+.++..+.+.|..+.|+.+-+.-                      ..-.....+.|+++.|.++.++.       .+..
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~----------------------~~rFeLAl~lg~L~~A~~~a~~~-------~~~~  348 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDP----------------------DHRFELALQLGNLDIALEIAKEL-------DDPE  348 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-H----------------------HHHHHHHHHCT-HHHHHHHCCCC-------STHH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCCh----------------------HHHhHHHHhcCCHHHHHHHHHhc-------CcHH
Confidence            467788888999999999887664                      13456778899999998875433       4677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      .|..|.....+.|+++.|++.|.+..+         |..|+-.|.-.|+.++-.++.+.....+.     ++....++.-
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~  414 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALL  414 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHH
Confidence            899999999999999999999988764         66788888999999888888877766543     4555666667


Q ss_pred             cCChhHHHHHHHH
Q 037499          169 SRRLEDAWKVFDE  181 (262)
Q Consensus       169 ~g~~~~a~~~~~~  181 (262)
                      .|+.++..+++.+
T Consensus       415 lgd~~~cv~lL~~  427 (443)
T PF04053_consen  415 LGDVEECVDLLIE  427 (443)
T ss_dssp             HT-HHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH
Confidence            7888887777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.87  E-value=0.031  Score=42.13  Aligned_cols=102  Identities=12%  Similarity=0.167  Sum_probs=80.1

Q ss_pred             CCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC----------------CHH
Q 037499           46 PFRYNLLHYDLIITKLGRA-----KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR----------------LLE  104 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~  104 (262)
                      +.+.|-.+|.+.+..+...     +.++-....++.|.+ .|+.-|..+|..|++.+-+-.                +-+
T Consensus        62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~  140 (406)
T KOG3941|consen   62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN  140 (406)
T ss_pred             cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence            4566888888888888765     678888888888988 489999999999998775532                235


Q ss_pred             HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 037499          105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIM  148 (262)
Q Consensus       105 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~  148 (262)
                      -+++++++|...|+.||..+-..+++++.+.+.. .+..++.-.|
T Consensus       141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence            6889999999999999999999999999988753 3334444344

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.85  E-value=0.17  Score=40.30  Aligned_cols=170  Identities=12%  Similarity=0.054  Sum_probs=108.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCChhh
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV--VPEEIIFCNVISFYGR---ARLLEHALQVFDEMSSFNVQRTVKS  124 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~  124 (262)
                      +..+...++-.|....+++..+++.+.+......  .-+..+-....-++.+   .|+.++|++++..+....-.++..+
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3333446666899999999999999999875322  2223333345556667   8999999999999655555788889


Q ss_pred             HHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC-hh---HHHHHH----HHHHHCC-
Q 037499          125 FNTLLNAMLT---------CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR-LE---DAWKVF----DEMLKRR-  186 (262)
Q Consensus       125 ~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~m~~~~-  186 (262)
                      |..+...|-.         ....++|+..|.+.-+.. ++...--.++..+...|. .+   +..++-    ..+.+.| 
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            9888887642         224788888888776544 222221122222222222 22   222222    1222333 


Q ss_pred             --CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          187 --LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       187 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                        -..|-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              2345566778888999999999999999999864

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.77  E-value=0.0076  Score=31.74  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=11.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDA  156 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  156 (262)
                      +...|.+.|++++|.++|++..+..+.|.
T Consensus         7 la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    7 LARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            33334444444444444444433333333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.74  E-value=0.13  Score=37.40  Aligned_cols=160  Identities=14%  Similarity=0.101  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMH  164 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~  164 (262)
                      +.+||-|.--+...|+++.|.+.|+...+.. +....+...-.-++.--|++.-|.+=|...-..++  |-...|.-++.
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E  177 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE  177 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            5567777777778888888888888887764 22222322222334456778888777777666655  33334443333


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHH
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-------AQVFASLIKGL  237 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~  237 (262)
                         ..-++.+|..-+.+--+.   .|..-|...|-.|. .|++.+ ..+++++..  +-.-+       ..||-.|.+-|
T Consensus       178 ---~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a--~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         178 ---QKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFY-LGKISE-ETLMERLKA--DATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             ---hhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHH-HhhccH-HHHHHHHHh--hccchHHHHHHHHHHHHHHHHHH
Confidence               333455554443332221   24344444443332 344332 344555543  22222       34677788888


Q ss_pred             HhcCChhHHHHHHHHHHHcC
Q 037499          238 CAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       238 ~~~g~~~~a~~~~~~m~~~g  257 (262)
                      ...|+.++|..+|+-.+...
T Consensus       248 l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         248 LSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             hccccHHHHHHHHHHHHHHh
Confidence            89999999999998766543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.72  E-value=0.19  Score=39.00  Aligned_cols=129  Identities=13%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCh
Q 037499          103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT--C----GKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRL  172 (262)
Q Consensus       103 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~  172 (262)
                      +.+.+.+++.|.+.|+..+..+|-+.......  .    ....+|..+|+.|++..+    ++-.++..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45666788999999999888777664444433  2    235689999999998876    344455555443  44443


Q ss_pred             ----hHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499          173 ----EDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQVFASLI  234 (262)
Q Consensus       173 ----~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~  234 (262)
                          +.++.+|+.+.+.|...+  ......++..+.....  ...+..+++.+.+. ++++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence                567888888888776543  3455555544333222  45788889999777 9988887776554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.72  E-value=0.036  Score=42.11  Aligned_cols=78  Identities=19%  Similarity=0.288  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCchHHHHHH
Q 037499          123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK-----RRLQPTLVTFGTL  197 (262)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~l  197 (262)
                      .++..++..+...|+.+.+.+.++.+....+.+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+....
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            35666777777888888888888888888888888888888888888888888888887765     4777777776666


Q ss_pred             HHH
Q 037499          198 IYG  200 (262)
Q Consensus       198 i~~  200 (262)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            554

>PRK11906 transcriptional regulator; Provisional

Probab=96.64  E-value=0.28  Score=39.94  Aligned_cols=145  Identities=11%  Similarity=0.110  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHhh-cCCCCC-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499          102 LLEHALQVFDEMSS-FNVQRT-VKSFNTLLNAMLT---------CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus       102 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ..+.|+.+|.+... ..+.|+ ...|..+..++..         .....+|.++-+...+.++.|+.....+..+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            35688889998882 122443 3455544444332         234667888888889988999999999999889999


Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD---AQVFASLIKGLCAVGELSLAL  247 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~  247 (262)
                      +++.|...|++....+.. ...+|......+.-.|+.++|.+.+++..+.   .|.   .......+..|+..+ ++.|+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL---sP~~~~~~~~~~~~~~~~~~~-~~~~~  427 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL---EPRRRKAVVIKECVDMYVPNP-LKNNI  427 (458)
T ss_pred             chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence            999999999999986422 3445555555667789999999999997743   553   333344444566554 46666


Q ss_pred             HHHH
Q 037499          248 GFKE  251 (262)
Q Consensus       248 ~~~~  251 (262)
                      .++-
T Consensus       428 ~~~~  431 (458)
T PRK11906        428 KLYY  431 (458)
T ss_pred             HHHh
Confidence            6654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.2  Score=38.16  Aligned_cols=120  Identities=13%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037499           62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM  141 (262)
Q Consensus        62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a  141 (262)
                      ...|++.+|..+|.......  +-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus       145 ~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            33455555555555555532  2333444455555666666666666665554321111111111122233333332222


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      ..+-+..-. .+.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus       223 ~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         223 QDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            222222221 223444444555555555555555555444433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.59  E-value=0.25  Score=40.06  Aligned_cols=138  Identities=11%  Similarity=0.172  Sum_probs=92.4

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH--
Q 037499           60 KLGRAKMFDEVQQILHQLKHDTRVVPEE------IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA--  131 (262)
Q Consensus        60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--  131 (262)
                      .+.+++++.+|.++|.++.++.  ..++      ...+.++++|.. ++.+.....+..+.+..  | ...|-.+..+  
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~   88 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV   88 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence            4556799999999999998753  3332      233456777754 66777777777776542  2 3345555443  


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC---------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCchH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVS---------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTLV  192 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~  192 (262)
                      +.+.+++++|++.+..-.+...               +|-..=+..+.++...|++.+++.+++++...    ....+..
T Consensus        89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d  168 (549)
T PF07079_consen   89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD  168 (549)
T ss_pred             HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence            3578899999998876654411               12222256778888999999999999998764    3347888


Q ss_pred             HHHHHHHHHHh
Q 037499          193 TFGTLIYGLCL  203 (262)
Q Consensus       193 ~~~~li~~~~~  203 (262)
                      +|+.++-.+.+
T Consensus       169 ~yd~~vlmlsr  179 (549)
T PF07079_consen  169 MYDRAVLMLSR  179 (549)
T ss_pred             HHHHHHHHHhH
Confidence            88876544443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.57  E-value=0.03  Score=42.19  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      -+++++++|... |+.||..+-..|+.++.+.+-
T Consensus       141 C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  141 CAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence            455666666443 666666666666666655543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.56  E-value=0.0092  Score=31.42  Aligned_cols=27  Identities=11%  Similarity=0.176  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSF  116 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  116 (262)
                      +..+...|.+.|++++|+++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444555555555555555555555554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.54  E-value=0.19  Score=36.69  Aligned_cols=202  Identities=16%  Similarity=0.086  Sum_probs=145.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      ....+......+...+.+..+...+...............+......+...+++..+.+.+.........+ ........
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  136 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA  136 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence            35677788888999999999999988887521134556667777888888889999999999888754222 22333333


Q ss_pred             H-HHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          130 N-AMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       130 ~-~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                      . .+...|+++.|...+.......+   .....+......+...++.+.+...+..............+..+...+...+
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            3 78899999999999998855322   2334444455557788999999999999988632213667777888888889


Q ss_pred             CHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          206 RVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       206 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +++.+...+......   .|+ ...+..+...+...+..+.+...+.+..+
T Consensus       217 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         217 KYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             cHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999998764   443 44455555555577778888888877665

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.3  Score=39.05  Aligned_cols=165  Identities=13%  Similarity=0.004  Sum_probs=110.9

Q ss_pred             CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh---
Q 037499           49 YNLLHYDLII-TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS---  124 (262)
Q Consensus        49 ~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---  124 (262)
                      |....|-.+- .++.-.+++++|.+.--.+.+..  ..+......-..++.-.++.+.|...|++.+..+  |+...   
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~  241 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKS  241 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHh
Confidence            3334444433 45566799999999888887753  2233222222334445678899999999888754  33221   


Q ss_pred             ----------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499          125 ----------FNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT  190 (262)
Q Consensus       125 ----------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  190 (262)
                                +..-.+-..+.|++.+|.+.|.+.....|    ++...|........+.|+..+|+.--+...+.+   +
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~  318 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---S  318 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---H
Confidence                      22223344678999999999999988776    666778888888899999999999988887742   2


Q ss_pred             hHH--HHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          191 LVT--FGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       191 ~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ..+  |..-..++...++|++|.+-++...+.
T Consensus       319 syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222  222234455678899999988887765

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.53  E-value=0.12  Score=40.57  Aligned_cols=237  Identities=12%  Similarity=0.048  Sum_probs=148.0

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-HH---HhcCCCC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH-QL---KHDTRVV   84 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~---~~~~~~~   84 (262)
                      ...-+.-+..+.+.++|+..+.....+.        .....-..+|..+..+.++.|.+++++..-- +|   .+...-.
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l--------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~   80 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKL--------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD   80 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHH--------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445667788888888877664441        1222344577788888899999888766431 11   1110001


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----C-C
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQR---TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-----S-P  154 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~  154 (262)
                      .-...|..+.+++.+.-++.+++.+-..-... |..|   .-....++..+....+.++++++.|+...+..     + .
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L  160 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML  160 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence            12345666777777777777777766554432 1111   12344556777888889999999998775432     1 4


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCch-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---C
Q 037499          155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTL-----VTFGTLIYGLCLELRVDEALKLKEDMMRVY---N  222 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~  222 (262)
                      ...++..+.+.|.+..++++|.-+..+..+.    ++..=.     .....+.-++...|+...|.+..++..+..   |
T Consensus       161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG  240 (518)
T ss_pred             eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence            4568899999999999999998877665542    222111     122334456777888888888888765531   2


Q ss_pred             CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          223 VKP-DAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       223 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      -.+ -......+.+.|...|+.+.|+.-|+..
T Consensus       241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  241 DRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            222 2334556677888999999888776653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.44  E-value=0.14  Score=34.04  Aligned_cols=91  Identities=13%  Similarity=0.010  Sum_probs=53.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH---HHHHHhcC
Q 037499           60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL---LNAMLTCG  136 (262)
Q Consensus        60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g  136 (262)
                      +++..|+.+.|++.|.+...-  .+-....||.-..++--.|+.++|++-+++..+..-..+...+.+.   ...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            555667777777777666652  3455666777777776677777777766666554323333333222   33455566


Q ss_pred             CHHHHHHHHHHHHhcC
Q 037499          137 KIDRMTDLFQIMEKYV  152 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~  152 (262)
                      +-+.|..=|+..-..|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            6666666666655444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.38  E-value=0.17  Score=34.39  Aligned_cols=127  Identities=8%  Similarity=0.125  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML  133 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  133 (262)
                      ...++..+.+.+.......+++.+... + ..+...++.++..|++.+ ..+..+.+..      ..+......++..|.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence            346788888889999999999999886 3 467778999999998764 4444555542      123344566888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      +.+.++++..++.++..        +...+..+... ++++.|.+++.+-      .+...|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            99999999999888753        23334444444 7888888887751      256677777766553

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.34  E-value=0.46  Score=39.05  Aligned_cols=140  Identities=11%  Similarity=0.087  Sum_probs=89.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcC---C-------------
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI-IFCNVISFYGRARLLEHALQVFDEMSSFN---V-------------  118 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-------------  118 (262)
                      .+|...-+..+...-++.-++..+.   .|+.. .|..|  +-..+....+|+++|++..+.|   +             
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei---~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEI---NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh---hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            4566666777777777777777653   34432 22222  2223556778888887765432   0             


Q ss_pred             ----CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-
Q 037499          119 ----QRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-  187 (262)
Q Consensus       119 ----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-  187 (262)
                          ..+    ..+-..+..++-+.|+.++|++.|++|.+..+  .+......++.++...+.+.++..++.+-.+... 
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence                001    12223455666678999999999999977655  3556788999999999999999999988754322 


Q ss_pred             CCchHHHHHHHHH
Q 037499          188 QPTLVTFGTLIYG  200 (262)
Q Consensus       188 ~~~~~~~~~li~~  200 (262)
                      +.-...|+..+--
T Consensus       328 kSAti~YTaALLk  340 (539)
T PF04184_consen  328 KSATICYTAALLK  340 (539)
T ss_pred             chHHHHHHHHHHH
Confidence            2234567765533

The molecular function of this protein is uncertain.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=96.33  E-value=0.48  Score=39.12  Aligned_cols=166  Identities=10%  Similarity=0.115  Sum_probs=113.9

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.|.....+++..++....+.-++.+-.+|...|  -+...|..++.+|..+ .-++-..+|+++.+....|.+.-..+.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa  139 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA  139 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence            4566667778888888888888888888888765  5677888888888888 556677888877776666666666677


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCC--Cc---hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQ--PT---LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC  238 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  238 (262)
                      ..|.+ ++.+++..+|.+....=++  .+   ...|..+...  -..+.+....+...+....|..--...+.-+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            66666 7777777777777654211  01   1244444421  145666777777777666565556666677777777


Q ss_pred             hcCChhHHHHHHHHHHH
Q 037499          239 AVGELSLALGFKEEMVR  255 (262)
Q Consensus       239 ~~g~~~~a~~~~~~m~~  255 (262)
                      ...++++|++++..+.+
T Consensus       217 ~~eN~~eai~Ilk~il~  233 (711)
T COG1747         217 ENENWTEAIRILKHILE  233 (711)
T ss_pred             cccCHHHHHHHHHHHhh
Confidence            78888888888775544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.29  E-value=0.36  Score=37.22  Aligned_cols=164  Identities=10%  Similarity=0.113  Sum_probs=103.2

Q ss_pred             HHhcCChhHHHHHHHHHHhcC-CCCccHH-----HHHHHHHHHHhcC-CHHHHHHHHHHHhhc--------CCCCC----
Q 037499           61 LGRAKMFDEVQQILHQLKHDT-RVVPEEI-----IFCNVISFYGRAR-LLEHALQVFDEMSSF--------NVQRT----  121 (262)
Q Consensus        61 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----  121 (262)
                      ..+.|+++.|..++.+..... ...|+..     ++..+.....+.+ +++.|..++++..+.        ...++    
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457899999999999998753 2344421     2223334444566 888888888765433        11222    


Q ss_pred             -hhhHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHH
Q 037499          122 -VKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL  197 (262)
Q Consensus       122 -~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  197 (262)
                       ..+...++.+|...+..+   +|..+++.+....+..+.++..-+..+.+.++.+.+.+.+.+|... +......+...
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~  161 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI  161 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence             235677788888877654   5666666675554444667767788888899999999999999987 22233455555


Q ss_pred             HHHH---HhhCCHHHHHHHHHHHHHhcCCCCCH
Q 037499          198 IYGL---CLELRVDEALKLKEDMMRVYNVKPDA  227 (262)
Q Consensus       198 i~~~---~~~g~~~~a~~~~~~~~~~~~~~p~~  227 (262)
                      +..+   .... ...|...++.+... .+.|..
T Consensus       162 l~~i~~l~~~~-~~~a~~~ld~~l~~-r~~~~~  192 (278)
T PF08631_consen  162 LHHIKQLAEKS-PELAAFCLDYLLLN-RFKSSE  192 (278)
T ss_pred             HHHHHHHHhhC-cHHHHHHHHHHHHH-HhCCCh
Confidence            5444   4333 34555655555544 444443

It is also involved in sporulation [].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.15  Score=42.67  Aligned_cols=152  Identities=15%  Similarity=0.100  Sum_probs=105.6

Q ss_pred             HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 037499           16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS   95 (262)
Q Consensus        16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   95 (262)
                      +.-.|+++.|..++..+.                 ....+.++..+.+.|-.++|+++-.        .|+..     ..
T Consensus       596 ~vmrrd~~~a~~vLp~I~-----------------k~~rt~va~Fle~~g~~e~AL~~s~--------D~d~r-----Fe  645 (794)
T KOG0276|consen  596 LVLRRDLEVADGVLPTIP-----------------KEIRTKVAHFLESQGMKEQALELST--------DPDQR-----FE  645 (794)
T ss_pred             HhhhccccccccccccCc-----------------hhhhhhHHhHhhhccchHhhhhcCC--------Chhhh-----hh
Confidence            334677777777665551                 3344567778888888888876521        22221     23


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA  175 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  175 (262)
                      ...+.|+++.|.++..+..      +..-|..|.++..+.|++..|.+.|.....        |..|+-.+...|+.+..
T Consensus       646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l  711 (794)
T KOG0276|consen  646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGL  711 (794)
T ss_pred             hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHH
Confidence            3457788888887765543      456689999999999999999999988765        67777788888888777


Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      ..+-....+.|..      |...-+|...|+++++.+++.+-
T Consensus       712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence            7777777766532      33444667789999988887654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.24  E-value=0.65  Score=39.71  Aligned_cols=183  Identities=13%  Similarity=0.056  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHhcCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhh-------cCCCCChhhHHHHHHHHHhcC--
Q 037499           67 FDEVQQILHQLKHDTRVVPEEIIFCNVISF-YGRARLLEHALQVFDEMSS-------FNVQRTVKSFNTLLNAMLTCG--  136 (262)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g--  136 (262)
                      ...+...++...+...+.+-...=.....+ +....+.+.|+.+|+...+       .|   .......+..+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            457888888888763221111111122222 4467799999999998876       55   2335666777777643  


Q ss_pred             ---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH----hhCCHH
Q 037499          137 ---KIDRMTDLFQIMEKYVSPDACSYNILMHGCVV-SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC----LELRVD  208 (262)
Q Consensus       137 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~  208 (262)
                         +.+.|+.++...-..+.|+.......+..... ..+...|.++|....+.|..+   .+-.+..+|.    -..+..
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCHH
Confidence               67889999999988888877766555544444 356789999999999988532   2222222222    224788


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499          209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI  258 (262)
Q Consensus       209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  258 (262)
                      .|..++.+..+. + .|...--...+..+.. +..+.+.-.+..+.+.|.
T Consensus       382 ~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  382 LAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            999999998775 5 3332222233333444 677777766666666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.22  E-value=0.15  Score=36.32  Aligned_cols=61  Identities=11%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIME  149 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~  149 (262)
                      .+..+...|.+.|+.+.|++.|.++.+....+.  ...+-.++......+++..+...+.+..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            344455555555555555555555544332222  1223444444444455555444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.17  E-value=0.22  Score=33.71  Aligned_cols=86  Identities=9%  Similarity=0.054  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      +...+..-.....+.|++++|.+.|+.+..+....+ ....--.|+.+|.+.+++++|...+++.++.+-.....-|-..
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            344455566678889999999999999998642222 2455667899999999999999999999987522223445555


Q ss_pred             HHHHHhc
Q 037499          129 LNAMLTC  135 (262)
Q Consensus       129 l~~~~~~  135 (262)
                      +.+++.-
T Consensus        89 ~~gL~~~   95 (142)
T PF13512_consen   89 MRGLSYY   95 (142)
T ss_pred             HHHHHHH
Confidence            5655443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.13  E-value=0.078  Score=40.38  Aligned_cols=79  Identities=9%  Similarity=0.115  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hcCCCCCHHHHHH
Q 037499          157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----VYNVKPDAQVFAS  232 (262)
Q Consensus       157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~  232 (262)
                      .++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+    ..|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345566666777777777777777777663 34666777777777777777777777776644    2366666666655


Q ss_pred             HHHH
Q 037499          233 LIKG  236 (262)
Q Consensus       233 l~~~  236 (262)
                      ..+.
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.94  E-value=0.27  Score=32.74  Aligned_cols=134  Identities=9%  Similarity=-0.005  Sum_probs=65.1

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH---HHHHHHHHhcCCH
Q 037499           62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF---NTLLNAMLTCGKI  138 (262)
Q Consensus        62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~  138 (262)
                      .-.|.+++..+++.+.....    +..-++-+|--....-+-+-..++++.+-+   --|...+   ..++.+|...|  
T Consensus        13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n--   83 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRN--   83 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred             HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhc--
Confidence            34588999999999888754    233333333333333444555555555443   2222221   22233333333  


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499          139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM  218 (262)
Q Consensus       139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  218 (262)
                                     .+.......+......|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+..
T Consensus        84 ---------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC  147 (161)
T PF09205_consen   84 ---------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC  147 (161)
T ss_dssp             ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ---------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence                           22333444555566666666666666666542 24455566666666666666666666666665


Q ss_pred             Hh
Q 037499          219 RV  220 (262)
Q Consensus       219 ~~  220 (262)
                      +.
T Consensus       148 ek  149 (161)
T PF09205_consen  148 EK  149 (161)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=0.58  Score=40.89  Aligned_cols=180  Identities=12%  Similarity=0.103  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      .....-+..+.+...++.|+.+.+.-..    .++  ......-.+.+.+.|++++|...|-+-...- .|+     .++
T Consensus       335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi  404 (933)
T KOG2114|consen  335 KDLETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVI  404 (933)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHH
Confidence            3445677788888889999888765432    222  2334445556668899999999887766432 332     245


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      .-|....+..+-..+++.+.+.+..+...-+.|+.+|.+.++.++-.++.+.-. .|..  ..-....+..+.+.+-.++
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence            566677778888888999999999888889999999999999999888877655 3321  1124456666777777777


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      |..+-.+...      +......   .+-..+++++|++++..+
T Consensus       482 a~~LA~k~~~------he~vl~i---lle~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  482 AELLATKFKK------HEWVLDI---LLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHhcc------CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence            7766555422      2222222   234556677777666543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.91  E-value=0.2  Score=35.68  Aligned_cols=60  Identities=15%  Similarity=0.014  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      .+..+...|.+.|+.+.|.+.|.++.+....+.  ...+-.+|+.....+++..+...+.+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            344444455555555555555555444422222  223334444444455555555444444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.86  E-value=0.0041  Score=30.72  Aligned_cols=27  Identities=26%  Similarity=0.182  Sum_probs=24.7

Q ss_pred             CCCCCCCCHHHHHHHHhhcCChHHHHH
Q 037499            1 MNKAKPTSPFRLASLLRLQKDPKLALQ   27 (262)
Q Consensus         1 l~~~~~~~~~~l~~~~~~~g~~~~A~~   27 (262)
                      ++|.++.+|+.++.++...|++++|++
T Consensus         8 ~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    8 LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            478999999999999999999999864

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.81  E-value=0.4  Score=33.63  Aligned_cols=137  Identities=9%  Similarity=-0.012  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChh-HHHH--
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDAC-SYNI--  161 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~--  161 (262)
                      ...|...++ +.+.+..++|+.-|..+.+.|...-+ -...-+.....+.|+...|...|.++-...+ |-.. -...  
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            444555554 35667788888888888876633211 1222233455677888888888888876655 4433 1222  


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP  225 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p  225 (262)
                      -.-.+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+... ...|
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~ap  200 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAP  200 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCc
Confidence            23334577888888777777766554434444556666667888888888888888765 3344

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.71  E-value=0.52  Score=34.25  Aligned_cols=191  Identities=15%  Similarity=0.087  Sum_probs=140.7

Q ss_pred             cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMT  142 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~  142 (262)
                      .+....+...+...............+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            46677777777777664211113567788888899999999999999888752 22555667777888888899999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          143 DLFQIMEKYVSPDACSYNILMH-GCVVSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      +.+.........+......... .+...|+++.+...+.+......  ......+......+...++.+.+...+.....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999998766643333444444 78999999999999999866321  12334444444556788999999999999986


Q ss_pred             hcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          220 VYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       220 ~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .  ... ....+..+...+...++++.+...+......
T Consensus       196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  231 (291)
T COG0457         196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL  231 (291)
T ss_pred             h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence            4  233 4677888888899999999999998887763

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.69  E-value=0.83  Score=37.66  Aligned_cols=138  Identities=19%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------CC
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---------------------PD  155 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------------------~~  155 (262)
                      =+..+...-++.-.+..+.  .|+- ..|..|  +--......+|.+++++..+.+.                     .+
T Consensus       179 WRERnp~aRIkaA~eALei--~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd  254 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEI--NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD  254 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence            3455565555555555553  2332 223222  22245567888888888755321                     01


Q ss_pred             ----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC--HH
Q 037499          156 ----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD--AQ  228 (262)
Q Consensus       156 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~  228 (262)
                          ...-..+..++.+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+..+. . -|.  ..
T Consensus       255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~-lpkSAti  332 (539)
T PF04184_consen  255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-S-LPKSATI  332 (539)
T ss_pred             cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-c-CCchHHH
Confidence                111134566667888888888888888765322 23446677888888888888888888876432 1 233  33


Q ss_pred             HHHHHHHHHHhcC
Q 037499          229 VFASLIKGLCAVG  241 (262)
Q Consensus       229 ~~~~l~~~~~~~g  241 (262)
                      .|+..+-.+...+
T Consensus       333 ~YTaALLkaRav~  345 (539)
T PF04184_consen  333 CYTAALLKARAVG  345 (539)
T ss_pred             HHHHHHHHHHhhc
Confidence            5655443333333

The molecular function of this protein is uncertain.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.57  E-value=0.58  Score=34.23  Aligned_cols=161  Identities=11%  Similarity=-0.062  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      -+.+||-+.--+...|+++.|.+.|+...+-+  +....+...-.-++.=.|++..|.+-|...-+.. +.|+  |.++-
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~LW  172 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRSLW  172 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHHHH
Confidence            45678888888899999999999999988753  2223333332333345688888888777766543 2232  22222


Q ss_pred             H-HHHhcCCHHHHHHHH-HHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------CchHHHHHHHHHH
Q 037499          130 N-AMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ------PTLVTFGTLIYGL  201 (262)
Q Consensus       130 ~-~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~~li~~~  201 (262)
                      - .--+.-+..+|..-+ ++...   .|..-|...|-.|.- |++. ...+++++....-.      .=..||--+...+
T Consensus       173 LYl~E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         173 LYLNEQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            1 112233455555433 34333   444445443333321 1111 12233333321110      1145777888888


Q ss_pred             HhhCCHHHHHHHHHHHHHh
Q 037499          202 CLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       202 ~~~g~~~~a~~~~~~~~~~  220 (262)
                      ...|+.++|..+|+-....
T Consensus       248 l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         248 LSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hccccHHHHHHHHHHHHHH
Confidence            8999999999999887763

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.57  E-value=0.83  Score=35.55  Aligned_cols=154  Identities=16%  Similarity=0.232  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhcCCC---CChhhHHHHHHHHHhcCC
Q 037499           67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR--AR----LLEHALQVFDEMSSFNVQ---RTVKSFNTLLNAMLTCGK  137 (262)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~  137 (262)
                      +++.+.+++.+.+. |+.-+..+|-+.......  ..    ...+|.++|+.|++...-   ++...+..++..  ..++
T Consensus        78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            56677888888886 788887776654433333  22    356889999999986422   233345555443  3333


Q ss_pred             ----HHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcC-C--hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--
Q 037499          138 ----IDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSR-R--LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--  206 (262)
Q Consensus       138 ----~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g-~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--  206 (262)
                          .+.+..+|+.+.+.+.  .|..-+.+-+-++.... .  ...+.++++.+.+.|+++....|..+.- ++-.++  
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl-Lall~~~~  233 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL-LALLEDPE  233 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH-HHhcCCch
Confidence                4677888888888666  34333333333333222 2  3478889999999999888777775543 332222  


Q ss_pred             ---HHHHHHHHHHHHHhcCCC
Q 037499          207 ---VDEALKLKEDMMRVYNVK  224 (262)
Q Consensus       207 ---~~~a~~~~~~~~~~~~~~  224 (262)
                         .+...++.+.+.+..++.
T Consensus       234 ~~~~~~i~ev~~~L~~~k~~~  254 (297)
T PF13170_consen  234 EKIVEEIKEVIDELKEQKGFG  254 (297)
T ss_pred             HHHHHHHHHHHHHHhhCcccC
Confidence               334445555555544443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=95.55  E-value=0.18  Score=31.44  Aligned_cols=61  Identities=7%  Similarity=0.113  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      -++.+-++.+......|++.+..+.+++|.+.+++..|+++|+.+..+.+  .+...|..+++
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq   84 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence            34566666666667788888888888888888888888888887765322  24446666554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.55  E-value=0.36  Score=38.07  Aligned_cols=168  Identities=10%  Similarity=0.042  Sum_probs=107.1

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR----VV   84 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~   84 (262)
                      +..+.+.+.+..++.+++.+-.+-...++      ..+-+.--....++..+....+.++++++.|+...+-..    --
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpg------t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~  159 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPG------TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM  159 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCC------CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence            45566677777777777777766655432      111111223445577778888889999999988765321    12


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCChh-hHHH-----HHHHHHhcCCHHHHHHHHHHHHhc---
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSS----FNVQRTVK-SFNT-----LLNAMLTCGKIDRMTDLFQIMEKY---  151 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~---  151 (262)
                      ....++..|...|.+..++++|.-+..+..+    .++ -|.. -|..     |.-++...|....|.+.-++..+.   
T Consensus       160 LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  160 LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            2356788899999999999999877665543    221 1221 1222     334556678877777777665433   


Q ss_pred             -CC--CChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          152 -VS--PDACSYNILMHGCVVSRRLEDAWKVFDEML  183 (262)
Q Consensus       152 -~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  183 (262)
                       |.  .-......+.+.|...|+.+.|+.-|+...
T Consensus       239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence             22  334455677888999999999988887654

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.54  E-value=0.23  Score=31.29  Aligned_cols=60  Identities=8%  Similarity=0.139  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      +..+-++.+......|++.+..+.+++|.+.+++..|+++|+.+....+..  ...|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence            455556666666777888888888888888888888888888776653322  226665553

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=95.49  E-value=0.81  Score=34.98  Aligned_cols=146  Identities=12%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHh-cC-CHHHHHHHHHHHHhc--CCCChhHHHHHHH
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFNTLLNAMLT-CG-KIDRMTDLFQIMEKY--VSPDACSYNILMH  164 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~--~~~~~~~~~~l~~  164 (262)
                      |..|+.   +...+.+|+++|+.... ..+-.|..+...+++.... .+ ....--++.+-+...  +.++..+...++.
T Consensus       134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~  210 (292)
T PF13929_consen  134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE  210 (292)
T ss_pred             HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence            555553   34456677777774332 2334566666666666655 22 222223333333333  3377777778888


Q ss_pred             HHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHH----HHHhcCCCCCHHHHHHHHHHHH
Q 037499          165 GCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKED----MMRVYNVKPDAQVFASLIKGLC  238 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~~p~~~~~~~l~~~~~  238 (262)
                      .++..+++.+-+++++..... +..-|..-|..+|......|+..-..++.++    ..++.++..+...-..+-+.+.
T Consensus       211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            888888888888887776655 5556777788888888888887777777654    1233466666665555544443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.40  E-value=1.7  Score=39.70  Aligned_cols=147  Identities=10%  Similarity=0.066  Sum_probs=72.9

Q ss_pred             HHHhcCChhHHHHHHHHHHhcC----CCCcc--HHHHHHHHHHHHhcC--CHHHHHHHHHH------HhhcCCCCChhhH
Q 037499           60 KLGRAKMFDEVQQILHQLKHDT----RVVPE--EIIFCNVISFYGRAR--LLEHALQVFDE------MSSFNVQRTVKSF  125 (262)
Q Consensus        60 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~--~~~~a~~~~~~------~~~~~~~~~~~~~  125 (262)
                      +-..+.+..+-+-+++++++..    .+..|  ..-|...+..+..+|  -++++..+.++      .... ..|+...+
T Consensus       860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l-y~~~~e~~  938 (1265)
T KOG1920|consen  860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL-YKPDSEKQ  938 (1265)
T ss_pred             HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe-eccCHHHH
Confidence            3344567777777777776421    01111  112333444444444  34444443322      1111 23454444


Q ss_pred             HHHHH----HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH--HHHHHH
Q 037499          126 NTLLN----AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT--FGTLIY  199 (262)
Q Consensus       126 ~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~  199 (262)
                      .....    -+.+...+++|.-.|+..-+        ..-.+.+|..+|+|.+|+.+..++....   +...  -..|+.
T Consensus       939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s 1007 (1265)
T KOG1920|consen  939 KVIYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVS 1007 (1265)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHH
Confidence            44433    33445666666666665543        2345566677777777777766654321   2111  134555


Q ss_pred             HHHhhCCHHHHHHHHHHHH
Q 037499          200 GLCLELRVDEALKLKEDMM  218 (262)
Q Consensus       200 ~~~~~g~~~~a~~~~~~~~  218 (262)
                      -+...++.-+|-++..+..
T Consensus      1008 ~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHcccchhHHHHHHHHh
Confidence            5666666666666665554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.38  E-value=0.81  Score=34.29  Aligned_cols=170  Identities=15%  Similarity=0.148  Sum_probs=109.8

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNI  161 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~  161 (262)
                      |-...|+.-+. -.+.|++++|.+.|+.+....  -+-...+--.++.++.+.+++++|+..+++.....+ .....|..
T Consensus        33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            33444555444 458899999999999998653  122344556667788899999999999999988777 22333444


Q ss_pred             HHHHHHhc-------CChhHH---HHHHHHHHHC----CCCCchHHH------------HHHHHHHHhhCCHHHHHHHHH
Q 037499          162 LMHGCVVS-------RRLEDA---WKVFDEMLKR----RLQPTLVTF------------GTLIYGLCLELRVDEALKLKE  215 (262)
Q Consensus       162 l~~~~~~~-------g~~~~a---~~~~~~m~~~----~~~~~~~~~------------~~li~~~~~~g~~~~a~~~~~  215 (262)
                      .|.+.+..       .+...+   ..-|+++++.    ...||...-            ..+.+.|.+.|.+-.|..-++
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~  191 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE  191 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            44444322       233334   4444444443    122332221            123467889999999999999


Q ss_pred             HHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          216 DMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       216 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +|.+.+.-.+ ....+-.+..+|...|-.++|...-.-+..
T Consensus       192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         192 EVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            9998633222 234566778899999999998876555443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.38  E-value=1.5  Score=37.54  Aligned_cols=176  Identities=15%  Similarity=0.134  Sum_probs=106.9

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH------------HH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH------------QL   77 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------~~   77 (262)
                      ..++..++-.|++.+|.++|.+-             |...      -.+..|.....++.|.+++.            +-
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~-------------G~en------RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR  696 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRS-------------GHEN------RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR  696 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHc-------------Cchh------hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            34567788899999999999887             3321      23344444455555555442            11


Q ss_pred             Hhc--CCCCccHHHHHHHHHHHHhcCCHHHHHHHHH------HHhhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499           78 KHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFD------EMSSFNVQR---TVKSFNTLLNAMLTCGKIDRMTDLFQ  146 (262)
Q Consensus        78 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~  146 (262)
                      .+.  +--+|.     +....+..+|+.++|..+.-      -+.+.+.+.   +..+...+..-+.+...+.-|-++|.
T Consensus       697 A~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~  771 (1081)
T KOG1538|consen  697 ADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL  771 (1081)
T ss_pred             HHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence            110  001222     23455566788777776532      122222222   23344445555566677888889998


Q ss_pred             HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchH-----------HHHHHHHHHHhhCCHHHHHHHHH
Q 037499          147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV-----------TFGTLIYGLCLELRVDEALKLKE  215 (262)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~  215 (262)
                      +|-.        ...++..+...++|.+|..+-+...+.  .||+.           -|.-.-.+|.+.|+-.+|.++++
T Consensus       772 k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe  841 (1081)
T KOG1538|consen  772 KMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE  841 (1081)
T ss_pred             Hhcc--------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence            8865        356777888999999999998876653  33322           12333467888888888988888


Q ss_pred             HHHH
Q 037499          216 DMMR  219 (262)
Q Consensus       216 ~~~~  219 (262)
                      ++..
T Consensus       842 QLtn  845 (1081)
T KOG1538|consen  842 QLTN  845 (1081)
T ss_pred             Hhhh
Confidence            8754

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.30  E-value=0.059  Score=26.84  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          229 VFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35666777777777777777777744

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.27  E-value=0.45  Score=36.73  Aligned_cols=99  Identities=10%  Similarity=0.093  Sum_probs=47.0

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHH
Q 037499          119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF  194 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (262)
                      +.+..+...++..-....+.+.++..+-+++....    ++.. -.++++.+. .-++++++.++..=++.|+-||.+++
T Consensus        61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~  138 (418)
T KOG4570|consen   61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF  138 (418)
T ss_pred             CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence            34444444444444445555555555555544322    1111 111122211 22444555555555555566666666


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          195 GTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       195 ~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ..+|..+.+.+++.+|..+...|+.
T Consensus       139 c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  139 CLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHH
Confidence            6666666666666555555544443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.24  E-value=0.061  Score=26.79  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=10.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 037499           90 FCNVISFYGRARLLEHALQVFDE  112 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~  112 (262)
                      |..|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444455555555555555544

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.19  E-value=1.6  Score=36.70  Aligned_cols=188  Identities=11%  Similarity=-0.011  Sum_probs=129.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT  127 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  127 (262)
                      +++..+|...+..-.+.|+++.+.-+|+...--  +..=...|-..+.-....|+.+.|..++....+..++-...+.-.
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~  371 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL  371 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence            347789999999999999999999999998752  333345566666666666999999998888777654433333222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH---HHHHHHHHCCCCCchHHHHHHHHH----
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW---KVFDEMLKRRLQPTLVTFGTLIYG----  200 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~~~~~li~~----  200 (262)
                      -....-..|+++.|..+++.+...-+.....-..-+....+.|+.+.+.   .++........  +..+...+..-    
T Consensus       372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~  449 (577)
T KOG1258|consen  372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARL  449 (577)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHH
Confidence            2233345689999999999998877433444455567777889988888   44443333222  22233333222    


Q ss_pred             -HHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499          201 -LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG  241 (262)
Q Consensus       201 -~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  241 (262)
                       +.-.++.+.|..++.++.+  .++++...|..++..+...+
T Consensus       450 ~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  450 RYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence             2345889999999999986  66778888888887766654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.14  E-value=1.7  Score=36.60  Aligned_cols=186  Identities=12%  Similarity=0.004  Sum_probs=123.7

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      +....|..-+..-...|+++.+.-+|+..           +-+...-...|--.+.-....|+.+.|..++....+- -+
T Consensus       295 aql~nw~~yLdf~i~~g~~~~~~~l~erc-----------li~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~  362 (577)
T KOG1258|consen  295 AQLKNWRYYLDFEITLGDFSRVFILFERC-----------LIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HV  362 (577)
T ss_pred             HHHHHHHHHhhhhhhcccHHHHHHHHHHH-----------HhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cC
Confidence            34455677777788899999999999998           3344456677888888888889999999888877764 23


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCChhHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMT---DLFQIMEKYVSPDACSY  159 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~  159 (262)
                      +-.+.+.-.-....-..|+++.|..+++.+...-  |+. ..-..-+....+.|..+.+.   +++...... ..+....
T Consensus       363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~~~i~  439 (577)
T KOG1258|consen  363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KENNGIL  439 (577)
T ss_pred             CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccCcchh
Confidence            3333332222333445689999999999998763  443 33333455666788888877   444333332 2222233


Q ss_pred             HHHHHH-----HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          160 NILMHG-----CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       160 ~~l~~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                      ..+.--     +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus       440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  440 EKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            322222     23467889999999999886 5667778888887766555

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.03  E-value=0.092  Score=25.55  Aligned_cols=27  Identities=15%  Similarity=0.303  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          229 VFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +|..+..+|...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344444445555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.00  E-value=0.034  Score=27.36  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=8.3

Q ss_pred             hhhHHHHHHHHHhcCCHHHH
Q 037499          122 VKSFNTLLNAMLTCGKIDRM  141 (262)
Q Consensus       122 ~~~~~~ll~~~~~~g~~~~a  141 (262)
                      ..+|+.+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            33444444444444444433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.90  E-value=0.88  Score=32.04  Aligned_cols=24  Identities=13%  Similarity=0.039  Sum_probs=11.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHH
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      .|.-+-.+.|++.+|...|..+..
T Consensus       172 ALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         172 ALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHhHHHHhccchHHHHHHHHHHHc
Confidence            344444445555555555554444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.79  E-value=1.9  Score=35.30  Aligned_cols=144  Identities=11%  Similarity=0.072  Sum_probs=86.9

Q ss_pred             HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHH
Q 037499           15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV   93 (262)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   93 (262)
                      .+-+++++++|.++|.++.....      ..++... ...-+.++++|.. ++.+.....+..+.+..|-.+-...+.. 
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~------~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~-   86 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKE------SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKA-   86 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhh------cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHH-
Confidence            34578999999999998855421      1112222 2223445555554 5677777777777775432222222222 


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhc--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C
Q 037499           94 ISFYGRARLLEHALQVFDEMSSF--NVQR------------TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-----P  154 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~  154 (262)
                       -.+.+.+.+.+|++.+..-...  +..+            +...=+..+.++...|++.++..+++++...-.     .
T Consensus        87 -L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w  165 (549)
T PF07079_consen   87 -LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW  165 (549)
T ss_pred             -HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence             2345778888888887765543  2122            112224557788899999999999988865432     5


Q ss_pred             ChhHHHHHHHHHH
Q 037499          155 DACSYNILMHGCV  167 (262)
Q Consensus       155 ~~~~~~~l~~~~~  167 (262)
                      +..+|+.++-.+.
T Consensus       166 ~~d~yd~~vlmls  178 (549)
T PF07079_consen  166 NSDMYDRAVLMLS  178 (549)
T ss_pred             cHHHHHHHHHHHh
Confidence            7777776544443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.76  E-value=0.48  Score=34.17  Aligned_cols=78  Identities=12%  Similarity=0.025  Sum_probs=42.2

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhH
Q 037499          168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN--VKPDAQVFASLIKGLCAVGELSL  245 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~  245 (262)
                      +.|+ +.|.+.|-.+...+.--++.....|. .|....+.++++.++.+..+...  -.+|+..+..|+..|.+.|+.+.
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            3344 45555555555554433444444443 33335666666666666554321  24566666777777777666666


Q ss_pred             HH
Q 037499          246 AL  247 (262)
Q Consensus       246 a~  247 (262)
                      |-
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            53

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.71  E-value=0.77  Score=41.76  Aligned_cols=183  Identities=17%  Similarity=0.200  Sum_probs=90.6

Q ss_pred             HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHhcC--ChhHHHHHHHHHHhcC----CCC
Q 037499           13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL--LHYDLIITKLGRAK--MFDEVQQILHQLKHDT----RVV   84 (262)
Q Consensus        13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~----~~~   84 (262)
                      +-+-..+.|+.+=+-+++.++....     ..+.++.|.  .-|...+..+.+.|  -+++++.+.++-.--.    -+.
T Consensus       858 ~VAq~SqkDPkEyLP~L~el~~m~~-----~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~  932 (1265)
T KOG1920|consen  858 LVAQKSQKDPKEYLPFLNELKKMET-----LLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYK  932 (1265)
T ss_pred             HHHHHhccChHHHHHHHHHHhhchh-----hhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheec
Confidence            3344456677776666666643211     011222222  22344444444444  3444444433221100    123


Q ss_pred             ccHHHHHH----HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q 037499           85 PEEIIFCN----VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN  160 (262)
Q Consensus        85 ~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  160 (262)
                      |+...+..    ....+.....+++|.-.|+..-+         ....+.+|-.+|+|.+|+.+..++......-..+-.
T Consensus       933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~ 1003 (1265)
T KOG1920|consen  933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAE 1003 (1265)
T ss_pred             cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHH
Confidence            44443333    33344445566666655554432         123456777777777777777766542111122235


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      .|+.-+...++.-+|-++..+....   |     .-.+..+++...|++|.++....
T Consensus      1004 ~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence            6677777777777777777665542   1     12334455666677766665443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.59  E-value=0.6  Score=40.26  Aligned_cols=126  Identities=11%  Similarity=0.066  Sum_probs=94.1

Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499           73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV  152 (262)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  152 (262)
                      +.+.+..+.|.....-+.+.-+.-+...|+-.+|.++-.+.+    -|+...|-.-+.+++..++|++-+++-++.+   
T Consensus       670 lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---  742 (829)
T KOG2280|consen  670 LQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---  742 (829)
T ss_pred             HHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---
Confidence            334444444444444456666777788899999999888877    6888899989999999999998777665553   


Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499          153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED  216 (262)
Q Consensus       153 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  216 (262)
                        ++.-|.-...+|.+.|+.++|.+++-+....     .    -...+|.+.|++.+|.++--+
T Consensus       743 --sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  743 --SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             --CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence              2667888889999999999999998764322     1    466788889999888876543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.50  E-value=0.15  Score=24.65  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=12.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          230 FASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       230 ~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      |..+..+|...|++++|++.+++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34444455555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.48  Score=36.58  Aligned_cols=108  Identities=10%  Similarity=0.112  Sum_probs=78.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh
Q 037499           46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK  123 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  123 (262)
                      |.+....+-..++..-....+++.++..+-.+.....  ..|+. +-.++++.+ -.-++++++.++..=++.|+-||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence            4445556666667666777889999999888875321  11222 223344444 3457889999999999999999999


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD  155 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  155 (262)
                      +++.+++.+.+.+++.+|..+.-.|......+
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~  168 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQEAFE  168 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999887776554433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.35  E-value=2.5  Score=35.89  Aligned_cols=133  Identities=15%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE   86 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   86 (262)
                      ...+.++..+.++|-.++|+++-..-.                      .-.....+.|+++.|.++..+..       +
T Consensus       615 ~~rt~va~Fle~~g~~e~AL~~s~D~d----------------------~rFelal~lgrl~iA~~la~e~~-------s  665 (794)
T KOG0276|consen  615 EIRTKVAHFLESQGMKEQALELSTDPD----------------------QRFELALKLGRLDIAFDLAVEAN-------S  665 (794)
T ss_pred             hhhhhHHhHhhhccchHhhhhcCCChh----------------------hhhhhhhhcCcHHHHHHHHHhhc-------c
Confidence            345778888889999999887654431                      12335567899999988876553       4


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ..-|..|..+..+.+++..|.+.|.+...         |..|+-.+...|+.+....+-...++.+..|.     ...+|
T Consensus       666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-----AF~~~  731 (794)
T KOG0276|consen  666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-----AFLAY  731 (794)
T ss_pred             hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccch-----HHHHH
Confidence            56699999999999999999999988765         45677788888888876666666666655443     34567


Q ss_pred             HhcCChhHHHHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEM  182 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m  182 (262)
                      ...|+++++.+++..-
T Consensus       732 ~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  732 FLSGDYEECLELLIST  747 (794)
T ss_pred             HHcCCHHHHHHHHHhc
Confidence            7889999998887654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.21  E-value=1.2  Score=30.83  Aligned_cols=55  Identities=13%  Similarity=0.036  Sum_probs=29.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSF-NTLLNAMLTCGKIDRMTDLFQIMEKYV  152 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~  152 (262)
                      .-.+.++.+.+..++..+.-.  .|..... ..-...+...|++.+|+.+|+.+....
T Consensus        19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            334556666666666666543  2332222 222334556666667776666665543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.12  E-value=2.4  Score=33.75  Aligned_cols=192  Identities=13%  Similarity=0.136  Sum_probs=98.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCChhhHHHHHHHH
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV----QRTVKSFNTLLNAM  132 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~  132 (262)
                      ...+.-+.|+|+...+........   .++..++..+...  +.++++++....+.....-.    ......|......+
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l   78 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL   78 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            356777888888866666655532   2455555555443  77888888888777654210    01112233332333


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-----hcCChhHHHHHH---HHHHH--CCCCCchHHHHHHHHHHH
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV-----VSRRLEDAWKVF---DEMLK--RRLQPTLVTFGTLIYGLC  202 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~---~~m~~--~~~~~~~~~~~~li~~~~  202 (262)
                      .+...+.+..++.+-..... .+......++....     ...+++.-..++   ..+..  ........++..++..+.
T Consensus        79 ~~lq~L~Elee~~~~~~~~~-~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   79 VKLQQLVELEEIIELKSNLS-QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HHHhHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            33333333333222221110 00111111111110     011111111111   11111  112345567888889999


Q ss_pred             hhCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          203 LELRVDEALKLKEDMMRVYNVKP---DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       203 ~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +.|+++.|...+.++.+. ....   .+.....-.+..-..|+..+|+..+++..+
T Consensus       158 k~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999988753 2111   233444445667788898999998888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.03  E-value=1.9  Score=32.26  Aligned_cols=114  Identities=14%  Similarity=0.025  Sum_probs=51.7

Q ss_pred             hcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCch-HHHHHHHHHHH
Q 037499          134 TCGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTL-VTFGTLIYGLC  202 (262)
Q Consensus       134 ~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~~~  202 (262)
                      ++-++++|+.+|++....-.      .-...+....+.+.+...+++|-..+.+-...    .--++. ..|...|-.+.
T Consensus       122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L  201 (308)
T KOG1585|consen  122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL  201 (308)
T ss_pred             hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence            34455556666555432211      11223444555555666665555444332211    011111 22344444555


Q ss_pred             hhCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChhHHHH
Q 037499          203 LELRVDEALKLKEDMMRVYNV--KPDAQVFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       203 ~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~  248 (262)
                      ...++..|.+.++.-.+..++  +-+..+...|+.+|- .|+.+++..
T Consensus       202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k  248 (308)
T KOG1585|consen  202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK  248 (308)
T ss_pred             hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence            556666777766664332111  124455666665553 345454443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.90  E-value=0.9  Score=37.37  Aligned_cols=52  Identities=8%  Similarity=0.050  Sum_probs=23.1

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      +...|+++.+...+......  +.....+...+++...+.+++++|..+-+-|.
T Consensus       333 ~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l  384 (831)
T PRK15180        333 FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMML  384 (831)
T ss_pred             HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            33444455554444444331  22333344444444444445544444444444

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.89  E-value=0.94  Score=28.67  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499           69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS  115 (262)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  115 (262)
                      +..+-++.+... .+.|++.+..+.+++|-+.+++..|.++|+.++.
T Consensus        28 e~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   28 ELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344444444443 3555555555555555555555555555555543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.83  E-value=0.83  Score=33.43  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHG  165 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~  165 (262)
                      .+..++.+.+.+...+|+...++-.+.. +.+...-..++..|+-.|+|++|..-++-.-...+   +-..+|..+|.+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3445566667777777777777666554 55556667777777777887777766665544333   444556666654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.82  E-value=0.97  Score=28.28  Aligned_cols=45  Identities=18%  Similarity=0.274  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      ++.+-++.+... .+.|++.+..+.+++|-+.+++..|.++|+..+
T Consensus        25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444444444443 345555555555555555555555555555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.81  E-value=2.3  Score=32.38  Aligned_cols=202  Identities=11%  Similarity=0.056  Sum_probs=128.1

Q ss_pred             CCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHhcCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCC--
Q 037499           47 FRYNLLHYDLIIT-KLGRAKMFDEVQQILHQLKHDTRVVPEE--IIFCNVISFYGRARLLEHALQVFDEMSS---FNV--  118 (262)
Q Consensus        47 ~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--  118 (262)
                      -.||+..=|..-. --.+..+.++|+.-|++..+-.|-+-+.  .....++..+.+.+++++..+.|.++..   ..+  
T Consensus        22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr  101 (440)
T KOG1464|consen   22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR  101 (440)
T ss_pred             CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            3455544333222 1223458999999999998754433332  3456688899999999999999988853   211  


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChh----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----
Q 037499          119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDAC----SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ----  188 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----  188 (262)
                      ..+....|++++....+.+.+--.+.++.-.+.-.  .+..    |-+.+...|...|.+.+..++++++...--.    
T Consensus       102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe  181 (440)
T KOG1464|consen  102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE  181 (440)
T ss_pred             cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence            23445678888777777776666555554332211  2222    3356778888888898888888888753111    


Q ss_pred             C-------chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHhcCChhHHHH
Q 037499          189 P-------TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG----LCAVGELSLALG  248 (262)
Q Consensus       189 ~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~a~~  248 (262)
                      .       =...|..=|+.|....+-..-..++++...-...-|.+.....+-.|    ..+.|++++|..
T Consensus       182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT  252 (440)
T KOG1464|consen  182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT  252 (440)
T ss_pred             hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence            1       14567777888888888888888888776654555666554433222    235677777653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=93.53  E-value=0.45  Score=37.24  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=59.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      +-|.+.|.+++|+.+|.......+.+++++..-..+|.+...+..|+.-.......+ ..-...|..-+.+-...|...+
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME  183 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence            457788899999999988877777788888888889998888887776666655432 0011223333333333345555


Q ss_pred             HHHHHHHHHHhcCCCCC
Q 037499          210 ALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~  226 (262)
                      |.+=++...   .+.|+
T Consensus       184 AKkD~E~vL---~LEP~  197 (536)
T KOG4648|consen  184 AKKDCETVL---ALEPK  197 (536)
T ss_pred             HHHhHHHHH---hhCcc
Confidence            555555554   34555

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.51  E-value=1  Score=32.99  Aligned_cols=77  Identities=9%  Similarity=0.023  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLN  130 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~  130 (262)
                      +.+..++.+.+.+...+++...++-.+..  +.+...-..+++.++-.|++++|..-++-.-..  ...+...+|..++.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            45566788889999999999998887753  566677788899999999999999877766543  12344566777766


Q ss_pred             H
Q 037499          131 A  131 (262)
Q Consensus       131 ~  131 (262)
                      +
T Consensus        81 ~   81 (273)
T COG4455          81 C   81 (273)
T ss_pred             H
Confidence            4

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.46  E-value=2.1  Score=30.98  Aligned_cols=92  Identities=10%  Similarity=-0.001  Sum_probs=68.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRT-----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      .+-+.+.|++++|..-|.+.+..- ++.     ...|..-..++.+.+.++.|+.--.+..+.++........-..+|.+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            344567888888888888887753 332     23455556678888888888888888887777666666666778888


Q ss_pred             cCChhHHHHHHHHHHHCC
Q 037499          169 SRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~  186 (262)
                      ...++.|+.-|+.+.+..
T Consensus       181 ~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESD  198 (271)
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence            888899988888888763

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.32  E-value=2  Score=31.14  Aligned_cols=105  Identities=11%  Similarity=0.094  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHhcCChhHHHH
Q 037499          103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD-----ACSYNILMHGCVVSRRLEDAWK  177 (262)
Q Consensus       103 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~  177 (262)
                      -++++.--+.++..|            +-+...|++++|..-|.......++.     ...|..-..++.+.+.++.|+.
T Consensus        88 k~k~~~kad~lK~EG------------N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~  155 (271)
T KOG4234|consen   88 KDKAIEKADSLKKEG------------NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE  155 (271)
T ss_pred             HHHHHHHHHHHHHHH------------HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence            344555555566554            35568899999999988888776622     3456666778888899998888


Q ss_pred             HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      -....++.+.. .......-..+|.+..++++|+.=|..+.+.
T Consensus       156 dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  156 DCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            88888876432 2223333345788888899998888888753

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.30  E-value=0.33  Score=23.46  Aligned_cols=23  Identities=13%  Similarity=0.096  Sum_probs=8.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHH
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEM  182 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m  182 (262)
                      ..+..+|...|++++|...|++.
T Consensus         5 ~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    5 YNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHH
Confidence            33333333333333333333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.25  E-value=0.75  Score=32.96  Aligned_cols=93  Identities=11%  Similarity=0.042  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      -.+...+...++++.|..-+++....   +-|.    .+-..|.+.....|.+++|++.++.....++  .......-.+
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGD  167 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhh
Confidence            34567888899999999999988753   2222    2223456778889999999999999887653  2333455578


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYV  152 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~  152 (262)
                      ++...|+.++|..-|+......
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHcc
Confidence            8999999999999999988775

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.20  E-value=3.5  Score=32.65  Aligned_cols=100  Identities=10%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             CccHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           84 VPEEIIFCNVISFYGRARL------------LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                      |-|..+|-.++..--..-.            .+.-+.++++..+.+ +.+......++..+.+..+.++..+-++++...
T Consensus        16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~   94 (321)
T PF08424_consen   16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK   94 (321)
T ss_pred             cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            5667788887765433321            345566777776664 556667777777777777777777778877777


Q ss_pred             CCCChhHHHHHHHHHHh---cCChhHHHHHHHHHHH
Q 037499          152 VSPDACSYNILMHGCVV---SRRLEDAWKVFDEMLK  184 (262)
Q Consensus       152 ~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~  184 (262)
                      .+.+...|...+.....   .-.++....+|.+...
T Consensus        95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~  130 (321)
T PF08424_consen   95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR  130 (321)
T ss_pred             CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            66677777777766544   2345566666655544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.18  E-value=0.14  Score=23.27  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcC
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKN   31 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~   31 (262)
                      .....+...+...|++++|..++++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3456789999999999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.17  E-value=0.34  Score=24.58  Aligned_cols=28  Identities=25%  Similarity=0.296  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          228 QVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      .+++.|...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3556666666666666666666666543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.15  E-value=0.33  Score=24.63  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      +++.|...|...|++++|+.++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            44455555555555555555555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.11  E-value=3.2  Score=31.97  Aligned_cols=73  Identities=11%  Similarity=0.018  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hcCCCCCHHHHH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----VYNVKPDAQVFA  231 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~  231 (262)
                      +++.....|..+|.+.+|.++.++..+.+ +.+...+..+++.+...|+--.+.+-++++.+    ..|+..+...++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee  357 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE  357 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence            44566778888888888888888888763 45777788888888888887777666665532    346666655544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.84  E-value=2.3  Score=30.80  Aligned_cols=77  Identities=13%  Similarity=-0.038  Sum_probs=61.5

Q ss_pred             HhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCchHHHHHHHHHHHhhCCHH
Q 037499          133 LTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR---RLQPTLVTFGTLIYGLCLELRVD  208 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~  208 (262)
                      .+.|+ +.|.+.|-.+...+. .++..-..+...|. ..+.+++..++.+..+.   +-.+|+..+..|++.+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34454 679999999998888 56666666666665 77899999999988864   33788999999999999999999


Q ss_pred             HHH
Q 037499          209 EAL  211 (262)
Q Consensus       209 ~a~  211 (262)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            875

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.80  E-value=0.28  Score=23.68  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=13.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          230 FASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       230 ~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      |..+...|...|++++|.+.|++..+
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444555555555555555555444

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.80  E-value=2.3  Score=30.21  Aligned_cols=29  Identities=7%  Similarity=-0.051  Sum_probs=12.7

Q ss_pred             hhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499           67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFY   97 (262)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (262)
                      ++.|.+..+......  |.|...++.-..++
T Consensus         7 FE~ark~aea~y~~n--P~DadnL~~WG~AL   35 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN--PLDADNLTNWGGAL   35 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--cHhHHHHHHHHHHH
Confidence            445555555544432  44555444443333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.58  E-value=0.051  Score=37.09  Aligned_cols=128  Identities=13%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL  172 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  172 (262)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.      .+..-...++..|.+.|-+
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~------~~~yd~~~~~~~c~~~~l~   86 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT------SNNYDLDKALRLCEKHGLY   86 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS------SSSS-CTHHHHHHHTTTSH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc------ccccCHHHHHHHHHhcchH
Confidence            4555555666666666666666544344455666666666666555555555541      1112224445555555555


Q ss_pred             hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      +.+.-++.++....-         .+..+...++++.|.+++.+       .++...|..++..|...+.
T Consensus        87 ~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   87 EEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence            555555544332110         00012233344444422211       2356677777777766554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.45  E-value=4.6  Score=32.13  Aligned_cols=192  Identities=9%  Similarity=0.077  Sum_probs=102.5

Q ss_pred             HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--C-CccHH
Q 037499           12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--V-VPEEI   88 (262)
Q Consensus        12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~   88 (262)
                      .+.+..+.|+++...+.......            ..++...|.++...  +.++++++...++.....-.  + .....
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~------------~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~   69 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNE------------DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSE   69 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccC------------CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            45678889999997777666622            22355666665544  88999999998888776310  0 00111


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-----cCCHHHHHHHH---HHHHh--c-CCCChh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-----CGKIDRMTDLF---QIMEK--Y-VSPDAC  157 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~---~~~~~--~-~~~~~~  157 (262)
                      .|........+...+.+..++.+-.....  .+......++.....     .++++--..++   ..+..  . ......
T Consensus        70 s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~  147 (352)
T PF02259_consen   70 SYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAE  147 (352)
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHH
Confidence            22222222222222222222222221110  001111111111110     12221111111   11111  1 125567


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      +|..++..+.+.|.++.|...+..+...+...   ++...-.-+......|+..+|+..++....
T Consensus       148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88899999999999999999999988754211   334444455667788999999998887766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.42  E-value=0.61  Score=22.36  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=9.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           91 CNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      ..+..++...|++++|++.|++..
T Consensus         5 ~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    5 YYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH
Confidence            333444444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.32  E-value=3.1  Score=29.94  Aligned_cols=89  Identities=18%  Similarity=0.049  Sum_probs=52.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH-----HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG-----TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL  237 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  237 (262)
                      ...+...+++++|...++.....   |....+.     .|.+.....|.+|+|.++++.....   .........-.+.+
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDil  169 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHH
Confidence            45566777777777777766543   1222222     2334556677777777777666532   12222333344567


Q ss_pred             HhcCChhHHHHHHHHHHHcC
Q 037499          238 CAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       238 ~~~g~~~~a~~~~~~m~~~g  257 (262)
                      ...|+-++|+.-|+...+.+
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         170 LAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHcCchHHHHHHHHHHHHcc
Confidence            77777777777777776654

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.24  E-value=0.044  Score=37.44  Aligned_cols=129  Identities=10%  Similarity=0.056  Sum_probs=82.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC  135 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  135 (262)
                      .++..+.+.+.+.....+++.+... +...+....+.++..|++.+..++..++++...       ..-...++..|.+.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~   83 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKH   83 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhc
Confidence            4677888888889999999998875 345667888899999999887777777776221       12334567778888


Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499          136 GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR  206 (262)
Q Consensus       136 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  206 (262)
                      |.+++|.-++.++.....        .+..+...++++.|.++..+      .++...|..++..|...+.
T Consensus        84 ~l~~~a~~Ly~~~~~~~~--------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNHDE--------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             TSHHHHHHHHHCCTTHTT--------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred             chHHHHHHHHHHcccHHH--------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence            888888887776544222        11113345555555533222      2356677777777665543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=92.24  E-value=3.5  Score=31.50  Aligned_cols=131  Identities=15%  Similarity=0.143  Sum_probs=80.1

Q ss_pred             HHHhhcCChHHHHHhhcCCCCCCCCCC--CCCC-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           14 SLLRLQKDPKLALQLFKNPNPNPNNTE--AQPL-KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      ..+.-..||..|++.-++-.+.-....  ..+. .-.+.-......=|.++++.++|.+++...-+.-+.. -+.-+.+.
T Consensus        43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p-EklPpkIl  121 (309)
T PF07163_consen   43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP-EKLPPKIL  121 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHH
Confidence            444456778777777655433210000  0000 0001112233445789999999999988766655431 22224446


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-----cCCHHHHHHHH
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-----CGKIDRMTDLF  145 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~  145 (262)
                      ..-|-.|.+.+.+..+.++-..-.+.--..+...|.+++..|..     .|.+++|+++.
T Consensus       122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            66677789999999999988776654324445568887776654     69999999987

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.98  E-value=6.4  Score=32.73  Aligned_cols=128  Identities=13%  Similarity=0.096  Sum_probs=90.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC  135 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  135 (262)
                      .-|.-....|++-.|-+-+.....+..-.|+....  ....+...|+++.+...+....+. +.....+...++....+.
T Consensus       294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l  370 (831)
T PRK15180        294 LSITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGL  370 (831)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhch
Confidence            33445555677776665555544432223444333  334456889999999988776653 234566788899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499          136 GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       136 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  186 (262)
                      |++++|..+-+.|......++..........-..|-++++.-.++++...+
T Consensus       371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            999999999999988777777776666666677888999999999887654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.73  E-value=3.1  Score=28.55  Aligned_cols=52  Identities=12%  Similarity=0.070  Sum_probs=27.0

Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499           99 RARLLEHALQVFDEMSSFNVQRTVKS-FNTLLNAMLTCGKIDRMTDLFQIMEKYV  152 (262)
Q Consensus        99 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~  152 (262)
                      ..++++.+..+++.|.-.  .|+..- -..-...+...|++++|..+|+.+.+..
T Consensus        22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            356666666666666543  232221 1112234456666666666666666543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.68  E-value=0.44  Score=25.01  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=16.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          233 LIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       233 l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      |..+|...|+.+.|.++++++.+.|
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            5566777777777777777766543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=91.40  E-value=2.4  Score=28.07  Aligned_cols=59  Identities=12%  Similarity=0.166  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499          174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI  234 (262)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  234 (262)
                      +..+-++.+...++.|++......+++|.+.+++..|.++|+-+...  ..+....|-.++
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v  125 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV  125 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence            34555666666677888888888888888888888888888887653  333333455544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.33  E-value=0.5  Score=22.44  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=13.2

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          197 LIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       197 li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      +..++.+.|++++|.+.|+++.+.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            344455555666666666655544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.32  E-value=0.88  Score=21.54  Aligned_cols=24  Identities=13%  Similarity=0.397  Sum_probs=15.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHH
Q 037499          232 SLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       232 ~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      .+..++.+.|+.++|.+.|+++++
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHH
Confidence            345556666677777777766665

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.29  E-value=2.4  Score=33.47  Aligned_cols=47  Identities=11%  Similarity=0.048  Sum_probs=22.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD  143 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  143 (262)
                      -|.+.|.+++|+..|....... +.+.+++..-..+|.+...+..|..
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~  152 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE  152 (536)
T ss_pred             hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence            3444555555555555444332 2244445444555555444444433

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=91.28  E-value=5.4  Score=30.54  Aligned_cols=123  Identities=8%  Similarity=-0.030  Sum_probs=78.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcC----CC-Ccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDT----RV-VPE-------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS  124 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  124 (262)
                      ....+.-..|+..|++.=++-.+.-    .. .++       ...+..=|.+++..+++.+++.+.-+--+.--+....+
T Consensus        41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI  120 (309)
T PF07163_consen   41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI  120 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH
Confidence            3334444567777766655444311    00 111       12334457889999999998877655543211223445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHh-----cCChhHHHHHH
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV-----SRRLEDAWKVF  179 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~-----~g~~~~a~~~~  179 (262)
                      ....|-.|.+.|+...+.++-..-..... .+...|..++..|..     .|.+++|+++.
T Consensus       121 leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  121 LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            67778889999999999998877665433 555558877777654     59999998887

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.14  E-value=4  Score=28.73  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=10.7

Q ss_pred             CCCccHHHHHHHHHHHHhcCCH
Q 037499           82 RVVPEEIIFCNVISFYGRARLL  103 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~  103 (262)
                      +++|+...+..++..+.+.|++
T Consensus        24 ~i~~~~~L~~lli~lLi~~~~~   45 (167)
T PF07035_consen   24 NIPVQHELYELLIDLLIRNGQF   45 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCH
Confidence            3444444455555555544443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.07  E-value=0.92  Score=21.77  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSS  115 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  115 (262)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555555666666665555544

...

>PF13934 ELYS: Nuclear pore complex assembly

Probab=91.02  E-value=5.2  Score=29.84  Aligned_cols=54  Identities=11%  Similarity=0.074  Sum_probs=24.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME  149 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  149 (262)
                      ++.++...|+...|+.+++...-..  .+......++.. ..++.+.+|..+-+...
T Consensus       114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~  167 (226)
T PF13934_consen  114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYP  167 (226)
T ss_pred             HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence            4445555566666666665543211  111122222222 44455666655554443

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=90.88  E-value=5.4  Score=29.83  Aligned_cols=58  Identities=16%  Similarity=0.320  Sum_probs=34.2

Q ss_pred             HhcCChhHHHHHHHHHHHC-C-----------CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          167 VVSRRLEDAWKVFDEMLKR-R-----------LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      ...|+...|+.-++.-... |           -.|.+.....++..| ..+++++|.+++.++.+. |+.|.
T Consensus       203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~l-gysp~  272 (333)
T KOG0991|consen  203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKL-GYSPE  272 (333)
T ss_pred             hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHc-CCCHH
Confidence            3566666666666655432 1           134555555555443 356777777777777665 66654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=90.57  E-value=0.98  Score=36.40  Aligned_cols=128  Identities=10%  Similarity=-0.075  Sum_probs=75.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh---cCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hcCC-CCChhhHH
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKH---DTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMS----SFNV-QRTVKSFN  126 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~  126 (262)
                      .|.+.|.-.|+++.|+...++-.+   +.|- ......+..+.+++.-.|+++.|.+.|..-.    +.|- ......+-
T Consensus       200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY  279 (639)
T KOG1130|consen  200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY  279 (639)
T ss_pred             ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            333333444777777776554322   1111 1223456777777777888888887776543    2231 12234455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          127 TLLNAMLTCGKIDRMTDLFQIMEKY------VSPDACSYNILMHGCVVSRRLEDAWKVFDEML  183 (262)
Q Consensus       127 ~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  183 (262)
                      +|.+.|.-..++++|+.++.+-...      ..-....+-++..+|...|..++|+.+.+.-.
T Consensus       280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            6677777777777777777543221      11445667777778877787777777665544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.51  E-value=9.5  Score=32.04  Aligned_cols=179  Identities=9%  Similarity=0.074  Sum_probs=126.9

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      .|-....+++..++...++.-+..+-.+|..-   .-+-..|..++.+|... ..++-..+|+++.+..+ .++..-..|
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL  138 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL  138 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence            35667778888999998999898888888874   35667788999999887 77888899999988763 334344445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSP------DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGL  201 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~  201 (262)
                      ...|- .++..++...|.+......|      -...|..+...  -..+.+....+...+.+. |..--.+.+.-+-.-|
T Consensus       139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            55454 48889999999888765443      12356666543  245677777777777665 5555566666677788


Q ss_pred             HhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499          202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL  237 (262)
Q Consensus       202 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  237 (262)
                      ....++++|++++..+.+.  -.-|...-..++.-+
T Consensus       216 s~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l  249 (711)
T COG1747         216 SENENWTEAIRILKHILEH--DEKDVWARKEIIENL  249 (711)
T ss_pred             ccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence            8999999999999987763  234554444555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.33  E-value=4.8  Score=28.33  Aligned_cols=135  Identities=17%  Similarity=0.225  Sum_probs=81.2

Q ss_pred             HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      .+++..+.+.+++|+...+..+++.+.+.|++.....++.    ... +|.......+-.+..  ....+.++--+|.+.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            4566677788889999999999999999998766554443    333 555544444433322  233344443334332


Q ss_pred             CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       186 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                       .   ...+..++..+...|++-+|.++.+.....  ..++   ...++++-.+.+|...-..+++-..++
T Consensus        88 -L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~--~~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 -L---GTAYEEIIEVLLSKGQVLEALRYARQYHKV--DSVP---ARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             -h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc--ccCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             0   013445666777899999999998776321  1222   244566666777766555555555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.27  E-value=4.7  Score=28.09  Aligned_cols=52  Identities=19%  Similarity=0.109  Sum_probs=21.9

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499           62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS  115 (262)
Q Consensus        62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  115 (262)
                      .+.++.+++..++.-+.--..-.+...++-  ...+.+.|++.+|+.+|+++..
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhc
Confidence            334555555555555543211111112222  2223455555555555555544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.23  E-value=6.2  Score=29.47  Aligned_cols=22  Identities=14%  Similarity=0.063  Sum_probs=14.5

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHh
Q 037499          199 YGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       199 ~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ..-...+++.+|+++|+++...
T Consensus       162 ~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  162 QYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344567777888887777553

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.18  E-value=9.6  Score=33.28  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=15.2

Q ss_pred             HHHHHHhhcCChHHHHHhhcC
Q 037499           11 RLASLLRLQKDPKLALQLFKN   31 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~   31 (262)
                      .....+.-.|+|+.|++.+-.
T Consensus       263 ~Yf~~LlLtgqFE~AI~~L~~  283 (613)
T PF04097_consen  263 LYFQVLLLTGQFEAAIEFLYR  283 (613)
T ss_dssp             -HHHHHHHTT-HHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHh
Confidence            344566778999999999888

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.83  E-value=1.1  Score=23.57  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=12.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhh
Q 037499           93 VISFYGRARLLEHALQVFDEMSS  115 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~  115 (262)
                      +..+|...|+.+.|.+++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            34455555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.71  E-value=9.7  Score=30.90  Aligned_cols=177  Identities=13%  Similarity=0.026  Sum_probs=101.5

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-------   81 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------   81 (262)
                      +..+...|...|+++.|++.|.+.++-        ...-+..+..|-.+|..-...|+|..+.....+..+..       
T Consensus       153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdY--------CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~  224 (466)
T KOG0686|consen  153 LEDLGDHYLDCGQLDNALRCYSRARDY--------CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLA  224 (466)
T ss_pred             HHHHHHHHHHhccHHHHHhhhhhhhhh--------hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHH
Confidence            456788899999999999999997554        23445677788888888888999998888887776531       


Q ss_pred             -CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-C-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           82 -RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-N-----VQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        82 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                       .+++-...+..+...+.+  ++..|.+.|-..... .     +.| |+.+|. .+.+++--++-+--+.+.....-...
T Consensus       225 q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~f  301 (466)
T KOG0686|consen  225 QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLF  301 (466)
T ss_pred             HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhH
Confidence             123334444444444333  666666665443321 1     123 333443 33444444443333233222111111


Q ss_pred             --CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCchHHHHHHH
Q 037499          154 --PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----RLQPTLVTFGTLI  198 (262)
Q Consensus       154 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li  198 (262)
                        ..+..+..+...|  .+++...++++++++..     -+.|.+.+.-.+|
T Consensus       302 lel~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I  351 (466)
T KOG0686|consen  302 LELEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI  351 (466)
T ss_pred             HhcChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence              4455555555554  35677778887777643     1344455444444

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=89.69  E-value=3.4  Score=29.87  Aligned_cols=52  Identities=15%  Similarity=0.040  Sum_probs=30.7

Q ss_pred             hcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          168 VSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ...+.+......+.+.+. ...|+..+|..++.++...|+.++|.+...++..
T Consensus       120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~  172 (193)
T PF11846_consen  120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR  172 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444433333333322 2456777777777777777777777777777764

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.54  E-value=5.1  Score=27.50  Aligned_cols=52  Identities=8%  Similarity=0.125  Sum_probs=40.5

Q ss_pred             HhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499          133 LTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  186 (262)
                      ...++.+++..++..|.-..|  +...++..  -.+...|+|++|.++|+++.+.+
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence            347899999999999987766  44444444  44568999999999999998875

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.25  E-value=7.6  Score=29.04  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=17.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          233 LIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       233 l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      +...-...+++.+|+.+|++.....
T Consensus       160 vA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  160 VAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333456778888999988876653

>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3

Probab=89.13  E-value=3.9  Score=25.56  Aligned_cols=89  Identities=11%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             CCCCCCHHHHHHHHhhc-CChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            3 KAKPTSPFRLASLLRLQ-KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      |+.|.+...+.+.+.+. ++.+...+++..+                 ++..|..++..-...+-+...++++.....  
T Consensus         1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i-----------------~p~~l~~if~~~l~~~~L~~il~~l~~~~~--   61 (94)
T PF13877_consen    1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSI-----------------PPDSLPKIFKNSLEPEFLSEILEALNEHFI--   61 (94)
T ss_pred             CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhC-----------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHc--
Confidence            56677777777777776 7777777777776                 555666666543333444444444443322  


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDE  112 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  112 (262)
                        +.+......++..+.+.++++-+...+..
T Consensus        62 --~~~~~~i~~~L~~L~~~~RF~l~~~fl~~   90 (94)
T PF13877_consen   62 --PEDPEFIFEILEALSKVKRFDLAVMFLSS   90 (94)
T ss_pred             --cCCHHHHHHHHHHhcCCCCHHHHHHhcCH
Confidence              12233445556666677777666655443

>PRK10941 hypothetical protein; Provisional

Probab=88.97  E-value=8.9  Score=29.48  Aligned_cols=78  Identities=9%  Similarity=-0.017  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCchHHHHHHHHHHH
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLC  202 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~  202 (262)
                      .+.+-.+|.+.++++.|+++.+.+....+.++.-+.--.-.|.+.|.+..|..-++...+.- -.|+.......+....
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~  262 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE  262 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence            45566778888999999999988888888777777777778888999998888888887652 3455555555555443

>PRK09687 putative lyase; Provisional

Probab=88.73  E-value=9.5  Score=29.53  Aligned_cols=218  Identities=14%  Similarity=0.079  Sum_probs=119.5

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC---C-hhHHHHHHHHHHh
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK---M-FDEVQQILHQLKH   79 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~a~~~~~~~~~   79 (262)
                      ++.......+..+...|..+....+.+ +...             +|...-...+.++++.|   . ..++...+..+..
T Consensus        35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~-ll~~-------------~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~  100 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQDVFRLAIE-LCSS-------------KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL  100 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcchHHHHHHH-HHhC-------------CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence            444445556666666665443333333 3121             24444444455555543   2 4677777776643


Q ss_pred             cCCCCccHHHHHHHHHHHHhcCCH-----HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037499           80 DTRVVPEEIIFCNVISFYGRARLL-----EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP  154 (262)
Q Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  154 (262)
                      .   .++..+-...+.+++..+..     ..+.+.+.....   .++..+-...+.++.+.++ .+++..+-.+.+.  +
T Consensus       101 ~---D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--~  171 (280)
T PRK09687        101 E---DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD--P  171 (280)
T ss_pred             c---CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC--C
Confidence            2   25566566666666655421     233444433333   3455666667777777776 4566666666554  4


Q ss_pred             ChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499          155 DACSYNILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL  233 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  233 (262)
                      +..+-...+.++.+.+ +...+...+..+...   ++..+-...+.++.+.|+. .|+..+-+..+.    ++  .....
T Consensus       172 ~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a  241 (280)
T PRK09687        172 NGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLI  241 (280)
T ss_pred             CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHH
Confidence            4444455555555542 234566666655543   4666666677777777774 455555444442    22  23456


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 037499          234 IKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +.++...|.. +|...+..+.+
T Consensus       242 ~~ALg~ig~~-~a~p~L~~l~~  262 (280)
T PRK09687        242 IEAAGELGDK-TLLPVLDTLLY  262 (280)
T ss_pred             HHHHHhcCCH-hHHHHHHHHHh
Confidence            7777888774 67777777765

>PRK09687 putative lyase; Provisional

Probab=88.63  E-value=9.7  Score=29.50  Aligned_cols=17  Identities=18%  Similarity=0.264  Sum_probs=7.7

Q ss_pred             CHHHHHHHHHHHHhcCC
Q 037499          226 DAQVFASLIKGLCAVGE  242 (262)
Q Consensus       226 ~~~~~~~l~~~~~~~g~  242 (262)
                      |..+-...+.++.+.|+
T Consensus       205 ~~~VR~~A~~aLg~~~~  221 (280)
T PRK09687        205 NEEIRIEAIIGLALRKD  221 (280)
T ss_pred             ChHHHHHHHHHHHccCC
Confidence            44444444444444444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.45  E-value=7.2  Score=27.78  Aligned_cols=42  Identities=10%  Similarity=0.192  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       207 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      +++|...|++....   .|+..+|+.-+....      +|-++..++.+.+
T Consensus        96 F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~  137 (186)
T PF06552_consen   96 FEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQG  137 (186)
T ss_dssp             HHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence            44455555555433   666666666655542      2444444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=88.05  E-value=10  Score=32.46  Aligned_cols=114  Identities=13%  Similarity=0.101  Sum_probs=73.8

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      .|-..+.|...-.+...|+...|.+.+.......-.........|.+.+.+.|...+|..++.+........+-++..+.
T Consensus       604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g  683 (886)
T KOG4507|consen  604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG  683 (886)
T ss_pred             CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence            34333333333334456888888888876654321112234455667777778888888888877766556677788888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHH
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI  198 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  198 (262)
                      +++.-..++++|++.|++..+... -+...-+.|.
T Consensus       684 ~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~  717 (886)
T KOG4507|consen  684 NAYLALKNISGALEAFRQALKLTT-KCPECENSLK  717 (886)
T ss_pred             hhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHH
Confidence            888888899999999888877632 2344444443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.79  E-value=2.5  Score=25.35  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=26.2

Q ss_pred             hhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 037499          203 LELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLALGF  249 (262)
Q Consensus       203 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~  249 (262)
                      ...+.++|+..|....+...-.|+ -.++..++.+|+..|++.+++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666654222222 12455666666666666666554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=87.78  E-value=33  Score=34.68  Aligned_cols=152  Identities=8%  Similarity=0.023  Sum_probs=101.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT  134 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  134 (262)
                      ++..+-.+.+.+.+|+..+++-.... .-......+..+...|+..+++|....+......   .|+  .+ .-|.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence            56667788899999999999842110 0122344566666699999999998888875222   233  22 33445677


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH-HHHHHHHhhCCHHHHHHH
Q 037499          135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG-TLIYGLCLELRVDEALKL  213 (262)
Q Consensus       135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~  213 (262)
                      .|++..|...|+.+...+++...+++-++......|.++.+....+-.... ..+....++ .-+.+-.+.++++.....
T Consensus      1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence            899999999999999988887888888887777788888777766655543 122222222 223444666777766555


Q ss_pred             H
Q 037499          214 K  214 (262)
Q Consensus       214 ~  214 (262)
                      .
T Consensus      1541 l 1541 (2382)
T KOG0890|consen 1541 L 1541 (2382)
T ss_pred             h
Confidence            3

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=87.51  E-value=3.1  Score=23.73  Aligned_cols=45  Identities=18%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      +...++++.++..  .-|..-.-.+|.++...|++++|.+++.++.+
T Consensus         7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen    7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3344444444432  12333334455555555555555555555543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.46  E-value=5  Score=30.38  Aligned_cols=62  Identities=19%  Similarity=0.076  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          193 TFGTLIYGLCLELRVDEALKLKEDMMRVYN----VKPDAQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      ....+...|.+.|++++|.++|+.+...+.    ..+...+...+..++.+.|+.+..+.+.-++.
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            334566778899999999999998865432    23455667778888889999888887766654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=87.18  E-value=7.6  Score=26.61  Aligned_cols=79  Identities=15%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCchHHHHHH
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKY------VSPDACSYNILMHGCVVSRR-LEDAWKVFDEMLKRRLQPTLVTFGTL  197 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~l  197 (262)
                      .+.++.-....+.+...+.+++.+...      +..+...|.+++.+.++... .-.+..+|.-|++.+.+++..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            344444444445555555554444221      11445556666666655544 34456666666665566666666666


Q ss_pred             HHHHHh
Q 037499          198 IYGLCL  203 (262)
Q Consensus       198 i~~~~~  203 (262)
                      |.++.+
T Consensus       122 i~~~l~  127 (145)
T PF13762_consen  122 IKAALR  127 (145)
T ss_pred             HHHHHc
Confidence            665543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.12  E-value=11  Score=28.44  Aligned_cols=177  Identities=15%  Similarity=0.140  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...|.....+|....+++.|...+.+..+  +...+...|.       ..+.++.|.-+.+++.+.  +--+..|+....
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~   99 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASE   99 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence            34555566666677777777776666654  2333333222       233445555555555542  222345666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC---C--CCCchHHHHHHHHHHHhhC
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR---R--LQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~g  205 (262)
                      .|..+|..+-|-..+++.-+.               ...-++++|+++|++....   +  .+.-...+...-+.+.+..
T Consensus       100 lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~  164 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE  164 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence            777777776666666554321               1334455566666554331   1  0111233444556667777


Q ss_pred             CHHHHHHHHHHHHHh---cCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          206 RVDEALKLKEDMMRV---YNVKPDA-QVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       206 ~~~~a~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      ++++|-..+.+-..-   ..-.++. ..|...|-.|.-..++..|...++.-
T Consensus       165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~  216 (308)
T KOG1585|consen  165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC  216 (308)
T ss_pred             HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence            777776665543211   0112222 23445555556666777777777654

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.86  E-value=4.8  Score=29.08  Aligned_cols=32  Identities=13%  Similarity=0.001  Sum_probs=17.5

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSS  115 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  115 (262)
                      .|++.+|..++.++...|+.++|.++..++..
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~  172 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARARR  172 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555555555555555555555555555544

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=86.68  E-value=3.4  Score=24.85  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=24.2

Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 037499           99 RARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDL  144 (262)
Q Consensus        99 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~  144 (262)
                      ..++.++|+..|....+.-..+.  -.++..++.+|+..|++.++++.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666665554321211  13445556666666666665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=86.57  E-value=39  Score=34.24  Aligned_cols=154  Identities=14%  Similarity=0.025  Sum_probs=108.3

Q ss_pred             HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      .|..+-.+.+.+.+|+..++.-...        ..........|-.+...|+.-+++|.+.-+...-..    .|+.  +
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~--------ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~ 1453 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRST--------EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y 1453 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccc--------cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H
Confidence            5666788899999999999984111        011122334455555599999999999888875222    1222  2


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHhc
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL-MHGCVVS  169 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~~~~~  169 (262)
                       .-|-.....|++..|...|+.+.+.+ ++...+++-++......|.++.++-..+.......+....|+++ +.+--+.
T Consensus      1454 -~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1454 -QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred             -HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence             33445567899999999999999886 66678888888888888888888887776665555444445444 5555788


Q ss_pred             CChhHHHHHHH
Q 037499          170 RRLEDAWKVFD  180 (262)
Q Consensus       170 g~~~~a~~~~~  180 (262)
                      ++++.....+.
T Consensus      1532 ~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1532 SQWDLLESYLS 1542 (2382)
T ss_pred             cchhhhhhhhh
Confidence            88888777766

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.51  E-value=24  Score=31.78  Aligned_cols=26  Identities=27%  Similarity=0.162  Sum_probs=21.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          232 SLIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       232 ~l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      .|+......|+.++|...++++....
T Consensus       623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         623 MLAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            56778888999999999988886543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.43  E-value=25  Score=31.76  Aligned_cols=195  Identities=10%  Similarity=0.013  Sum_probs=103.1

Q ss_pred             HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCccHHHHH
Q 037499           16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD----TRVVPEEIIFC   91 (262)
Q Consensus        16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~   91 (262)
                      ....|+++.|.++-+.....-.      .....+.+..+..+..+..-.|++++|..+..+..+.    ........+..
T Consensus       468 al~~~~~e~a~~lar~al~~L~------~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~  541 (894)
T COG2909         468 ALNRGDPEEAEDLARLALVQLP------EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL  541 (894)
T ss_pred             HHhcCCHHHHHHHHHHHHHhcc------cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            3457888888888776644311      2234457778888888888899999999988777664    11111222222


Q ss_pred             HHHHHHHhcCCH--HHHHHHHHHHhhcCC------CCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCChh---HH
Q 037499           92 NVISFYGRARLL--EHALQVFDEMSSFNV------QRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDAC---SY  159 (262)
Q Consensus        92 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~---~~  159 (262)
                      .-...+...|+.  ++.+..|........      .+-..++..++.++.+.. ...++..-++--....+....   .+
T Consensus       542 ~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~  621 (894)
T COG2909         542 QQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLAL  621 (894)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHH
Confidence            223345566733  333344443332110      112334555555555521 112222222222222221111   22


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCC----chHHHHHHHHH--HHhhCCHHHHHHHHHH
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQP----TLVTFGTLIYG--LCLELRVDEALKLKED  216 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~--~~~~g~~~~a~~~~~~  216 (262)
                      ..++......|++++|...+.++......+    +..+-...++.  -...|+...+.....+
T Consensus       622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         622 SMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            367788888999999999999887653333    22221222222  2345777776665544

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=86.11  E-value=15  Score=29.08  Aligned_cols=103  Identities=9%  Similarity=0.026  Sum_probs=74.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037499           44 LKPFRYNLLHYDLIITKLGRAKM------------FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD  111 (262)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  111 (262)
                      +...+.|+.+|-.++..--..-.            .+.-+.++++..+.  -+.+.......+..+.+..+.++..+-++
T Consensus        12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we   89 (321)
T PF08424_consen   12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWE   89 (321)
T ss_pred             HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            34456789999998876555432            45667788888775  35677788888999999999999999999


Q ss_pred             HHhhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 037499          112 EMSSFNVQRTVKSFNTLLNAMLT---CGKIDRMTDLFQIME  149 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~  149 (262)
                      ++.... +-+...|...|.....   .-.++....+|.+..
T Consensus        90 ~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l  129 (321)
T PF08424_consen   90 ELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL  129 (321)
T ss_pred             HHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            998875 4567788887776544   234667777665543

>PRK10941 hypothetical protein; Provisional

Probab=85.88  E-value=14  Score=28.43  Aligned_cols=82  Identities=10%  Similarity=-0.025  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL  237 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  237 (262)
                      ..+.+-.+|.+.++++.|+++.+.+..... .++.-+.--.-.|.+.|.+..|..=++...+...-.|+.......+...
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l  261 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI  261 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            346778889999999999999999998632 2444455455568999999999999999888756677777777777766


Q ss_pred             Hhc
Q 037499          238 CAV  240 (262)
Q Consensus       238 ~~~  240 (262)
                      ...
T Consensus       262 ~~~  264 (269)
T PRK10941        262 EQK  264 (269)
T ss_pred             hhc
Confidence            544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.71  E-value=14  Score=30.91  Aligned_cols=108  Identities=11%  Similarity=0.036  Sum_probs=77.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc---C-C-----CChhHHHHHHHHHHhcCChhHHHHHHHHHHH-------CCCCCc---
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKY---V-S-----PDACSYNILMHGCVVSRRLEDAWKVFDEMLK-------RRLQPT---  190 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~---~-~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~~~---  190 (262)
                      +.+.-.|++.+|.+++....-.   + .     .....||.+.-.+.+.|.+..+..+|....+       .|.+|.   
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            3455679999999988654221   1 1     2345568888888888998888888877764       354442   


Q ss_pred             --------hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499          191 --------LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV  240 (262)
Q Consensus       191 --------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  240 (262)
                              ..+||.-+ .|...|++-.|.+.|.+..+.  +..++..|..|..+|...
T Consensus       328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence                    34455444 567899999999999999874  566888999999999754

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.71  E-value=15  Score=28.55  Aligned_cols=61  Identities=16%  Similarity=0.168  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++....+.|..+|.+.+|.++.++...  --+.+...+-.|+..+...|+--.+..-++++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            455667889999999999999999975  3355788899999999999998888877777643

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.43  E-value=15  Score=28.25  Aligned_cols=184  Identities=12%  Similarity=0.143  Sum_probs=111.8

Q ss_pred             hcCChHHHHHhhcCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CC--CccHHHHH
Q 037499           18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFR--YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--RV--VPEEIIFC   91 (262)
Q Consensus        18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~   91 (262)
                      +..++++|+.-|+...+.         .|.+  ..-.+...++....+.+++++.+..+.++..--  .+  .-+..+.+
T Consensus        39 ~e~~p~~Al~sF~kVlel---------EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN  109 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLEL---------EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN  109 (440)
T ss_pred             cccCHHHHHHHHHHHHhc---------ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            456889999999887553         2322  344566778999999999999999998886410  11  12345567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------C
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSF-NVQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------------P  154 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------~  154 (262)
                      .++..-....+.+.-.++|+.-.+. .-..+.    .|-+.|...|...|.+.+..+++.++..+..            .
T Consensus       110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ  189 (440)
T KOG1464|consen  110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ  189 (440)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence            7777666666666655555432211 001111    2335677788888888888888888765432            1


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHH-----HhhCCHHHHH
Q 037499          155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGL-----CLELRVDEAL  211 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~  211 (262)
                      -...|..-|..|....+-.+-..++++...- .--|.+.+.. .|+-|     .+.|++++|-
T Consensus       190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~Ah  251 (440)
T KOG1464|consen  190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAH  251 (440)
T ss_pred             hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHH
Confidence            1345666677777777767777777766543 2234444333 33333     3456666654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=85.18  E-value=3.6  Score=33.87  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=42.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499           58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEE-IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG  136 (262)
Q Consensus        58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  136 (262)
                      +..+...++++.|+.++.++.+.   .||. ..|..-..++.+.+++..|+.=+.+..+.. +.....|---..++...+
T Consensus        11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence            34444555666666666666553   2432 223333355556666666665555555443 111222222233334444


Q ss_pred             CHHHHHHHHHHHHh
Q 037499          137 KIDRMTDLFQIMEK  150 (262)
Q Consensus       137 ~~~~a~~~~~~~~~  150 (262)
                      ++.+|+..|+....
T Consensus        87 ~~~~A~~~l~~~~~  100 (476)
T KOG0376|consen   87 EFKKALLDLEKVKK  100 (476)
T ss_pred             HHHHHHHHHHHhhh
Confidence            45555555555443

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=84.32  E-value=4.9  Score=22.90  Aligned_cols=18  Identities=17%  Similarity=0.445  Sum_probs=6.7

Q ss_pred             HHHHHhcCCHHHHHHHHH
Q 037499          129 LNAMLTCGKIDRMTDLFQ  146 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~  146 (262)
                      |.+|...|++++|.+++.
T Consensus        30 I~gllqlg~~~~a~eYi~   47 (62)
T PF14689_consen   30 IYGLLQLGKYEEAKEYIK   47 (62)
T ss_dssp             HHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHH
Confidence            333344444444443333

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=83.76  E-value=25  Score=29.56  Aligned_cols=195  Identities=9%  Similarity=0.085  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHhcCChh-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CCHH-HHHHHHHHHhhcCCCCChhhHH
Q 037499           50 NLLHYDLIITKLGRAKMFD-EVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-RLLE-HALQVFDEMSSFNVQRTVKSFN  126 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~a~~~~~~~~~~~~~~~~~~~~  126 (262)
                      ....|..+..++....... .|..+-.+     ++..+...|..-+....+. .+++ .-.+.|..+...-..+....|+
T Consensus       357 ~~~~ys~~~l~~~t~~~~r~~a~~l~~e-----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~  431 (568)
T KOG2396|consen  357 LYKQYSVLLLCLNTLNEAREVAVKLTTE-----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWA  431 (568)
T ss_pred             hHHHHHHHHHHHhccchHhHHHHHhhHH-----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            4556666666665554432 23333222     3445566665555544422 2332 2233445555432233344444


Q ss_pred             HHH-HHHHhcCCHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH--
Q 037499          127 TLL-NAMLTCGKIDRMTDLFQIMEKYVSPDACSY-NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC--  202 (262)
Q Consensus       127 ~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--  202 (262)
                      +.. ..+......+.   ++......+.++..++ +.++..+-..|...+|...+..+... .+|+...|..+|+.=.  
T Consensus       432 s~~~~dsl~~~~~~~---Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~  507 (568)
T KOG2396|consen  432 SASEGDSLQEDTLDL---IISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQ  507 (568)
T ss_pred             HHhhccchhHHHHHH---HHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhH
Confidence            443 11111111122   2222333333554443 56777788888888888888888876 5667777777775422  


Q ss_pred             hhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       203 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      .+-+...+..+++.+...+|  .|+..|--.+.-=...|..+.+-.++-+..+
T Consensus       508 ~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  508 ESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             hhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence            12347778888888888777  5555666555555577777777777666543

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=83.55  E-value=14  Score=26.48  Aligned_cols=65  Identities=8%  Similarity=0.115  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHHHhcCCCCc-cHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499           67 FDEVQQILHQLKHDTRVVP-EEIIFC-----NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT  134 (262)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  134 (262)
                      .+.|+.+|+.+.+....+- -.....     ..+-.|.+.|.+++|.+++++...   .|+......-+....+
T Consensus        85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~  155 (200)
T cd00280          85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR  155 (200)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence            4568888888887542110 111122     233467788888888888887776   3444333443333333

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.00  E-value=34  Score=30.49  Aligned_cols=155  Identities=13%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499           12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC   91 (262)
Q Consensus        12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   91 (262)
                      =+..+.+.+.+++|+++-+....+.        +.+ .-...+..++..+...|++++|-.+.-.|...     +..-|-
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~~~--------~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe  427 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIGNE--------ERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWE  427 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccCCc--------ccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHH
Confidence            4567889999999999999885431        111 13467788899999999999998888887653     345555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH---HHHHH-----------HHHHhc---CCC
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR---MTDLF-----------QIMEKY---VSP  154 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~-----------~~~~~~---~~~  154 (262)
                      ..+..+...++......+   +....-..+...|..++..+.. .+...   .+..|           +.....   ...
T Consensus       428 ~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se  503 (846)
T KOG2066|consen  428 LWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE  503 (846)
T ss_pred             HHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc
Confidence            555555555554332221   2211111244566666666655 11111   11111           111000   012


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          155 DACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      +...-..|+..|...++++.|..++-...+
T Consensus       504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~  533 (846)
T KOG2066|consen  504 STALLEVLAHLYLYDNKYEKALPIYLKLQD  533 (846)
T ss_pred             chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence            223334588888889999999888876654

>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]

Probab=82.42  E-value=8.5  Score=33.44  Aligned_cols=82  Identities=16%  Similarity=0.057  Sum_probs=58.6

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHhcCCCCccH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE--VQQILHQLKHDTRVVPEE   87 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~   87 (262)
                      .+|..+|...|++.++.++++.+...+        ++.+.-...||..++...+.|.++-  +.+-..+..+...+.-|.
T Consensus        32 ~sl~eacv~n~~~~rs~~ll~s~~~~~--------~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~  103 (1117)
T COG5108          32 ASLFEACVYNGDFLRSKQLLKSFIDHN--------KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDS  103 (1117)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCC--------cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcc
Confidence            478999999999999999999998774        4667778889999999999997653  222233333322345566


Q ss_pred             HHHHHHHHHHHh
Q 037499           88 IIFCNVISFYGR   99 (262)
Q Consensus        88 ~~~~~l~~~~~~   99 (262)
                      .||..++.+...
T Consensus       104 ~t~all~~~sln  115 (1117)
T COG5108         104 LTYALLCQASLN  115 (1117)
T ss_pred             hHHHHHHHhhcC
Confidence            777776665443

>smart00028 TPR Tetratricopeptide repeats

Probab=82.27  E-value=3.4  Score=18.49  Aligned_cols=19  Identities=16%  Similarity=0.232  Sum_probs=7.4

Q ss_pred             HHHHHhcCCHHHHHHHHHH
Q 037499           94 ISFYGRARLLEHALQVFDE  112 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~  112 (262)
                      ..++...++++.|...|+.
T Consensus         8 a~~~~~~~~~~~a~~~~~~   26 (34)
T smart00028        8 GNAYLKLGDYDEALEYYEK   26 (34)
T ss_pred             HHHHHHHhhHHHHHHHHHH
Confidence            3333333444444443333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=81.37  E-value=6  Score=34.16  Aligned_cols=21  Identities=14%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             cCChhHHHHHHHHHHHcCCCC
Q 037499          240 VGELSLALGFKEEMVRNKIEM  260 (262)
Q Consensus       240 ~g~~~~a~~~~~~m~~~g~~p  260 (262)
                      .|++.+|.+.+-.+.+..+-|
T Consensus       508 ~~~~~~Aa~~Lv~Ll~~~~~P  528 (566)
T PF07575_consen  508 EGDFREAASLLVSLLKSPIAP  528 (566)
T ss_dssp             ---------------------
T ss_pred             hhhHHHHHHHHHHHHCCCCCc
Confidence            356666666666655555544

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.32  E-value=5.4  Score=21.91  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=18.1

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          197 LIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       197 li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      +.-++.+.|++++|.+..+.+.+.   .|+
T Consensus         7 lAig~ykl~~Y~~A~~~~~~lL~~---eP~   33 (53)
T PF14853_consen    7 LAIGHYKLGEYEKARRYCDALLEI---EPD   33 (53)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHH---TTS
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhh---CCC
Confidence            344677788888888888877754   554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=81.05  E-value=32  Score=28.95  Aligned_cols=202  Identities=10%  Similarity=0.039  Sum_probs=113.6

Q ss_pred             CCCHHHHHHHHHHHHhcC------ChhHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 037499           48 RYNLLHYDLIITKLGRAK------MFDEVQQILHQLKHDTRVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR  120 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  120 (262)
                      -++...|+..|..|...-      .+...+.+|+...+..+..++ ..-|..+...+...+...   ++-..+...++..
T Consensus       312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r---~~a~~l~~e~f~~  388 (568)
T KOG2396|consen  312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR---EVAVKLTTELFRD  388 (568)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh---HHHHHhhHHHhcc
Confidence            357778888887777652      455667777777665445444 345555555555555432   2223333333455


Q ss_pred             ChhhHHHHHHHHHhcC-CHH-HHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCC-hhH-HH-HHHHHHHHCCCCCchHHH
Q 037499          121 TVKSFNTLLNAMLTCG-KID-RMTDLFQIMEKYVS-PDACSYNILMHGCVVSRR-LED-AW-KVFDEMLKRRLQPTLVTF  194 (262)
Q Consensus       121 ~~~~~~~ll~~~~~~g-~~~-~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~-~~~-a~-~~~~~m~~~~~~~~~~~~  194 (262)
                      +...|..-+....+.. ++. .-.++|........ +....|+...     .|+ ++. .+ .++...... ..|+..++
T Consensus       389 s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl  462 (568)
T KOG2396|consen  389 SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTL  462 (568)
T ss_pred             hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeeh
Confidence            6666666666655332 222 12233344443322 4455555554     222 221 11 222333333 34555554


Q ss_pred             -HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHc-CCCC
Q 037499          195 -GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA--VGELSLALGFKEEMVRN-KIEM  260 (262)
Q Consensus       195 -~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~-g~~p  260 (262)
                       +.++..+.+.|-..+|.+.+..+..  -.+|+...|.-+|+.=..  .-+..-+.++++.|... |-.|
T Consensus       463 ~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~  530 (568)
T KOG2396|consen  463 KSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS  530 (568)
T ss_pred             hHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence             4677888899999999999999976  445678888888764321  22377788888887654 5443

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=80.89  E-value=26  Score=27.81  Aligned_cols=64  Identities=16%  Similarity=0.230  Sum_probs=35.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC----CCChhHH--HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCch
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSY--NILMHGCVVSRRLEDAWKVFDEMLK-----RRLQPTL  191 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~  191 (262)
                      ++...-+.++.++|++.++++.+.-    .|+.+.|  +.+.+.+...|+..++.+.+.+..+     .|++|++
T Consensus        81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V  155 (380)
T KOG2908|consen   81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV  155 (380)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence            3444445556667776666664432    2444444  3345555566777777777666665     4555543

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=80.86  E-value=5.7  Score=30.78  Aligned_cols=43  Identities=16%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             CCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499           83 VVPEEII-FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF  125 (262)
Q Consensus        83 ~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  125 (262)
                      +.|+... |+..|....+.||+++|++++++.++.|+.--..+|
T Consensus       252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF  295 (303)
T PRK10564        252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF  295 (303)
T ss_pred             cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence            3344443 457778888888888888888888887754433333

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=80.70  E-value=2.6  Score=28.24  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=24.6

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG  200 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  200 (262)
                      ...|.-..|..+|+.|.+.|-+||  .|+.|+..
T Consensus       106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~  137 (140)
T PF11663_consen  106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE  137 (140)
T ss_pred             hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence            455677788999999999988877  56777654

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=80.60  E-value=19  Score=31.85  Aligned_cols=120  Identities=10%  Similarity=0.099  Sum_probs=78.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVSPD--ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      +.--|+.++|..+.++|.....|-  ..-..++..+|+-.|+-....+++.-.... +..|+.-+..+.-++.-..+++.
T Consensus       511 L~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~  589 (929)
T KOG2062|consen  511 LVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQ  589 (929)
T ss_pred             HHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhh
Confidence            445567778888888876654322  223446677888888887777777765554 45566666666666777788888


Q ss_pred             HHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          210 ALKLKEDMMRVYNVKPDAQ--VFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ...+.+-+.+.  ..|.+.  +--+|.-+|...|+ .+|..+++-|.+
T Consensus       590 ~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~  634 (929)
T KOG2062|consen  590 LPSTVSLLSES--YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS  634 (929)
T ss_pred             chHHHHHHhhh--cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence            88888777663  344433  33344456666666 578888888865

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.39  E-value=38  Score=29.32  Aligned_cols=178  Identities=14%  Similarity=0.077  Sum_probs=109.9

Q ss_pred             hHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHh-------cCCCCccHHH
Q 037499           22 PKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK-----LGRAKMFDEVQQILHQLKH-------DTRVVPEEII   89 (262)
Q Consensus        22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~   89 (262)
                      ...|.+.++.....+             +...-..+..+     +....+.+.|+..|+...+       . +   ....
T Consensus       228 ~~~a~~~~~~~a~~g-------------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a  290 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG-------------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPA  290 (552)
T ss_pred             hhHHHHHHHHHHhhc-------------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCcc
Confidence            456777887774442             33333333333     3345789999999999876       3 3   2334


Q ss_pred             HHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           90 FCNVISFYGRAR-----LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        90 ~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      ...+..+|.+..     +.+.|..+|...-+.| .|+....-..+..... ..+...|.++|...-..|.....-+..++
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~  369 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC  369 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            566777777643     6788999999999988 4555443333332222 24578999999999888776655555444


Q ss_pred             HHHH--hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          164 HGCV--VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       164 ~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ....  ...+...|..++++..+.| .|...--...+..+.. ++++.+.-.+..+..
T Consensus       370 y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  370 YELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE  425 (552)
T ss_pred             HHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence            3333  4457889999999999887 3332222222333333 666666555555443

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=80.17  E-value=15  Score=24.51  Aligned_cols=41  Identities=10%  Similarity=0.032  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHH
Q 037499          140 RMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFD  180 (262)
Q Consensus       140 ~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~  180 (262)
                      .+.++|..|...+.  ..+..|......+...|++++|.++|+
T Consensus        81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~  123 (126)
T PF08311_consen   81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ  123 (126)
T ss_dssp             HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44444444444333  333444444444444444444444443

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.03  E-value=54  Score=30.91  Aligned_cols=162  Identities=17%  Similarity=0.169  Sum_probs=95.9

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCC----------------CCCCCCCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNT----------------EAQPLKPFRYN--LLHYDLIITKLGRAKMFDEVQ   71 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~   71 (262)
                      +.++.+|...|...+|+..|.+....-+..                -..+....++.  ..-|..+++.+-+.+..+.+.
T Consensus       924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen  924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred             HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence            344555778888888888887764321111                01111122222  344677888888888888888


Q ss_pred             HHHHHHHhcCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh----hHHHHHHHHHhcCCHH----
Q 037499           72 QILHQLKHDTRVVPE----EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK----SFNTLLNAMLTCGKID----  139 (262)
Q Consensus        72 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~----  139 (262)
                      ++-....+.  ++++    ..+++++.+.....|.+-+|.+.+-.      .||..    ...-++..++.+|.++    
T Consensus      1004 QlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1004 QLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred             HHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhh
Confidence            887777663  3333    34566777777777877777655432      23333    3444555666666543    


Q ss_pred             --------HHHH-HHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHH
Q 037499          140 --------RMTD-LFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVF  179 (262)
Q Consensus       140 --------~a~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~  179 (262)
                              +... +++..-...+ .....|+.+-..+...+++.+|-.+.
T Consensus      1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred             CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence                    4444 3333333333 44556777777777888887766554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.02  E-value=4.2  Score=32.06  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=58.2

Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037499           99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV  178 (262)
Q Consensus        99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  178 (262)
                      ..|.++.|++.|-..+... ++....|..-.+++.+.++...|++=+.......+.+..-|-.--.+..-.|+|++|...
T Consensus       126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            4566777777777666655 555566666666667777777777666666665554444454445555566777777777


Q ss_pred             HHHHHHCCCCCch
Q 037499          179 FDEMLKRRLQPTL  191 (262)
Q Consensus       179 ~~~m~~~~~~~~~  191 (262)
                      |....+.+..+..
T Consensus       205 l~~a~kld~dE~~  217 (377)
T KOG1308|consen  205 LALACKLDYDEAN  217 (377)
T ss_pred             HHHHHhccccHHH
Confidence            7777766554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 67.5 bits (163), Expect = 5e-13
 Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 4/166 (2%)

Query: 74  LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
           L          P E     ++        L+       + S   +    +         L
Sbjct: 79  LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138

Query: 134 TCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
              ++     L  +               YN +M G       ++   V   +    L P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198

Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
            L+++   +  +  + +    ++   + M    +K  A   A L+ 
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 19/175 (10%), Positives = 53/175 (30%), Gaps = 5/175 (2%)

Query: 58  ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
           + +    K+  +V+Q         ++  ++               L  A  +        
Sbjct: 98  LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157

Query: 118 VQR---TVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV-VSRRL 172
            +R   T+  +N ++      G    +  +  ++ +  ++PD  SY   +       +  
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
               +  ++M +  L+   +    L+        +    K+K        + P  
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 14/100 (14%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD---EMLKRRLQPTLVTFGTLIYGLC 202
           Q  +  +S            C+++ +L  A  +        ++R   TL  +  ++ G  
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176

Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
            +    E + +   M++   + PD   +A+ ++ +    +
Sbjct: 177 RQGAFKELVYVLF-MVKDAGLTPDLLSYAAALQCMGRQDQ 215

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 36/298 (12%), Positives = 92/298 (30%), Gaps = 84/298 (28%)

Query: 5   KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
           +    F ++ +   Q+ P +  +++     +    + Q      YN+           R 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAK--YNV----------SRL 134

Query: 65  KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
           + + +++Q L +L+    V+ + ++        G+  +   AL V     S+ VQ     
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGS------GKTWV---ALDV---CLSYKVQCK--- 179

Query: 125 FNTLLNAM--LTCGKIDRMTDLFQIMEKYVSPDACSYNILM-HGCVVSRRLEDAWKVFDE 181
            +     +  L     +    + ++++K +     ++     H   +  R+         
Sbjct: 180 MD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 182 MLKRRLQP-----------------------TLVT----------FGTLIYGLCLE---- 204
           +LK +                           L+T                 + L+    
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 205 -LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL-GFKEEMVRNKIEM 260
            L  DE   L   +++  + +P       L + +       L++     E +R+ +  
Sbjct: 297 TLTPDEVKSL---LLKYLDCRPQ-----DLPREVLTTNPRRLSIIA---ESIRDGLAT 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.92
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.85
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.85
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.83
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.81
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.81
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.77
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.75
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.74
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.73
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.69
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.68
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.68
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.65
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.62
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.62
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.6
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.6
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.59
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.58
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.57
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.57
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.56
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.56
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.53
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.53
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.52
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.52
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.5
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.49
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.47
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.46
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.45
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.44
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.43
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.43
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.42
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.4
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.4
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.4
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.4
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.38
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.36
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.34
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.32
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.32
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.32
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.27
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.26
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.26
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.25
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.24
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.21
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.2
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.2
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.2
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.2
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.2
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.18
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.18
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.15
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.15
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.11
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.1
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.1
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.09
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.03
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.02
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.02
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.02
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.01
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.0
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.0
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.99
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.99
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.98
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.98
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.97
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.96
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.91
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.91
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.89
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.89
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.86
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.83
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.82
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.82
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.8
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.79
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.79
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.79
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.79
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.77
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.75
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.75
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.6
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.49
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.48
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.48
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.44
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.43
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.38
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.35
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.3
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.25
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.24
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.12
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.82
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.76
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.65
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.58
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.55
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.4
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.38
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.38
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.26
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.95
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.8
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.61
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.44
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.39
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.15
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.01
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.91
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.84
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.76
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.72
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.51
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.04
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	95.0
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.77
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.46
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.05
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.75
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.44
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.29
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.03
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.03
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.67
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.26
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	91.38
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.86
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.62
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.38
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.09
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.81
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	88.76
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	87.47
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	86.97
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	86.64
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	85.91
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	85.39
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	85.14
2p58_C	116	Putative type III secretion protein YSCG; type III	84.98
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	84.51
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	81.89
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.58
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	81.54
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	81.32
2p58_C	116	Putative type III secretion protein YSCG; type III	80.98
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	80.78

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=8e-37  Score=249.35  Aligned_cols=188  Identities=12%  Similarity=0.116  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC---------HHHHHHHHHHHhhcCCCCC
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL---------LEHALQVFDEMSSFNVQRT  121 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~  121 (262)
                      ...++.+|.+|++.|++++|+++|++|.+. |++||..+|+.||.+|++.+.         +++|.++|++|.+.|+.||
T Consensus        26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd  104 (501)
T 4g26_A           26 EALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN  104 (501)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence            346888999999999999999999999997 899999999999999988765         6899999999999999999


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499          122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG  200 (262)
Q Consensus       122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  200 (262)
                      ..||+++|.+|++.|++++|.++|++|.+.+. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999988 99999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499          201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV  240 (262)
Q Consensus       201 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  240 (262)
                      |++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus       185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred             HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999887 9999999999999998763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=5.5e-36  Score=244.42  Aligned_cols=191  Identities=18%  Similarity=0.261  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC---------H
Q 037499           69 EVQQILHQLKHDTRVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK---------I  138 (262)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---------~  138 (262)
                      .+..+.+++.++ +..+. ..+++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.         .
T Consensus         8 ~~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            8 PSENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             hHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            344555666654 45444 346888999999999999999999999999999999999999999987664         7


Q ss_pred             HHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          139 DRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       139 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      ++|.++|++|...+. ||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            899999999999998 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       218 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      .+. |+.||..||++||.+|++.|++++|.+++++|.+.|+.|+
T Consensus       167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            887 9999999999999999999999999999999999999997

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.2e-26  Score=194.58  Aligned_cols=237  Identities=11%  Similarity=-0.018  Sum_probs=172.9

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |.+..++..++..+.+.|++++|.++|+.+..           ..+.+..+|+.++..|.+.|++++|.++|+++.+.. 
T Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  403 (597)
T 2xpi_A          336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVD-----------RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-  403 (597)
T ss_dssp             TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence            33444555555555555555555555555421           233467777778888888888888888888777642 


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                       +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+.+..+|+.+
T Consensus       404 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  481 (597)
T 2xpi_A          404 -PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL  481 (597)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence             4456777888888888888888888888877665 55677788888888888888888888888877767777788888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHC----CCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKR----RLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG  236 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  236 (262)
                      +..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++|+++.+. + +.+..+|..+..+
T Consensus       482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~  559 (597)
T 2xpi_A          482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-S-TNDANVHTAIALV  559 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-SCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHH
Confidence            88888888888888888887765    55666  667888888888888888888888887764 2 3467788888888


Q ss_pred             HHhcCChhHHHHHHHHHHH
Q 037499          237 LCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       237 ~~~~g~~~~a~~~~~~m~~  255 (262)
                      |.+.|++++|.+.++++.+
T Consensus       560 ~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          560 YLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            8888888888888888776

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.6e-26  Score=193.85  Aligned_cols=240  Identities=12%  Similarity=0.044  Sum_probs=210.5

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |++..++..++..+.+.|++++|+++|+.+..           ..+.+..+|..++.++.+.|++++|..+++++.+.  
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--  368 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILE-----------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--  368 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--
Confidence            36677788999999999999999999998843           22347788899999999999999999999999864  


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      .+.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++....+.+..+|+.+
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  447 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL  447 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            36678899999999999999999999999998865 56788999999999999999999999999998888889999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCCCC--HHHHHHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVKPD--AQVFASLIKGL  237 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~  237 (262)
                      +.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+..   +..|+  ..+|..++.+|
T Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            999999999999999999999864 3478899999999999999999999999987642   45677  78999999999


Q ss_pred             HhcCChhHHHHHHHHHHHcC
Q 037499          238 CAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       238 ~~~g~~~~a~~~~~~m~~~g  257 (262)
                      .+.|++++|.++++++.+.+
T Consensus       527 ~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          527 RKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhcCHHHHHHHHHHHHHhC
Confidence            99999999999999998754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.92  E-value=7.4e-23  Score=163.04  Aligned_cols=233  Identities=13%  Similarity=0.049  Sum_probs=154.2

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      ...+..++..+...|++++|.+.|+.+..           ..+.+..+|..+...+.+.|++++|+..|+++.+..  +.
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~  201 (388)
T 1w3b_A          135 YCVRSDLGNLLKALGRLEEAKACYLKAIE-----------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN  201 (388)
T ss_dssp             THHHHHHHHHHHTTSCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence            33444555555555555555555555422           222345556666666666666666666666665532  33


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      +...+..+...+...|++++|+..|++..+.. +.+..++..+..+|.+.|++++|++.|+++.+..+.+..+|..+...
T Consensus       202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  280 (388)
T 1w3b_A          202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA  280 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            45555666666666666666666666665543 34566777777777777777777777777777666667777777777


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499          166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL  245 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  245 (262)
                      +.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++.+  ..+.+..++..+..+|.+.|++++
T Consensus       281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~  357 (388)
T 1w3b_A          281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHH
Confidence            778888888888887777653 34666777777777888888888888877764  223456677778888888888888


Q ss_pred             HHHHHHHHHH
Q 037499          246 ALGFKEEMVR  255 (262)
Q Consensus       246 a~~~~~~m~~  255 (262)
                      |.+.++++.+
T Consensus       358 A~~~~~~a~~  367 (388)
T 1w3b_A          358 ALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8888888775

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.92  E-value=2.3e-22  Score=160.18  Aligned_cols=237  Identities=11%  Similarity=0.001  Sum_probs=136.2

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++.++..++..+.+.|++++|++.|+.+..           ..+.+..+|..+..++.+.|++++|++.|+++.+..
T Consensus        63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (388)
T 1w3b_A           63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR-----------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN  131 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            345555677777777777777777777777632           223355567777777777777777777776666542


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD------  155 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------  155 (262)
                        +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+..++...|++++|+..|+++....+.+      
T Consensus       132 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  208 (388)
T 1w3b_A          132 --PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN  208 (388)
T ss_dssp             --TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence              3334455556666666666666666666666543 3345556666666666666666666666555444433      


Q ss_pred             ----------------------------hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499          156 ----------------------------ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV  207 (262)
Q Consensus       156 ----------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  207 (262)
                                                  ..++..+...+.+.|++++|...|+++.+.+. .+..+|..+...+.+.|++
T Consensus       209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~  287 (388)
T 1w3b_A          209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCH
Confidence                                        44444555555555555555555555554321 1334455555555555555


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       208 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++|...|+++.+.  .+.+..++..+...+.+.|++++|.+.++++.+
T Consensus       288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555555542  233445555555555555555555555555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=7.5e-22  Score=160.01  Aligned_cols=237  Identities=12%  Similarity=0.003  Sum_probs=203.5

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++..+..++..+.+.|++++|+.+|+.+..           ..+.+..+|..++.++...|++++|+..|+++.+..
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   90 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVD-----------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK   90 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            345556688899999999999999999999843           344578999999999999999999999999999863


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTL------------LNAMLTCGKIDRMTDLFQ  146 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~  146 (262)
                        +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+.   ..+..+            ...+...|++++|+..|+
T Consensus        91 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  167 (450)
T 2y4t_A           91 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD  167 (450)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence              5668889999999999999999999999999865 4444   566555            444889999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-
Q 037499          147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-  225 (262)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-  225 (262)
                      ++....+.+..++..++.+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.   .| 
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~  243 (450)
T 2y4t_A          168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQD  243 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred             HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence            9999888899999999999999999999999999998863 346789999999999999999999999999864   34 


Q ss_pred             CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHc
Q 037499          226 DAQVFASL------------IKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       226 ~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +...+..+            ...|...|++++|.++|+++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~  286 (450)
T 2y4t_A          244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT  286 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            44445444            78899999999999999999873

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=9.2e-22  Score=155.39  Aligned_cols=235  Identities=9%  Similarity=-0.019  Sum_probs=199.1

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      +...+..++..+.+.|++++|+..|+.+..           ..+.+..+|..+..++...|++++|+..|+++.+..  +
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p  130 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL-----------QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--P  130 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence            445599999999999999999999999843           345588999999999999999999999999999853  5


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH----------HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF----------NTLLNAMLTCGKIDRMTDLFQIMEKYVSP  154 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  154 (262)
                      .+..++..+..+|...|++++|++.|+++.+.. +.+...+          ..+...+...|++++|+.+|+++....+.
T Consensus       131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  209 (365)
T 4eqf_A          131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD  209 (365)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred             CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence            668899999999999999999999999998764 2222333          34578899999999999999999988775


Q ss_pred             --ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 037499          155 --DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS  232 (262)
Q Consensus       155 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~  232 (262)
                        +..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.  .+.+..++..
T Consensus       210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  286 (365)
T 4eqf_A          210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYN  286 (365)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHH
Confidence              89999999999999999999999999999874 346789999999999999999999999999875  2335888999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHc
Q 037499          233 LIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       233 l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +..+|.+.|++++|.+.++++.+.
T Consensus       287 l~~~~~~~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          287 LGISCINLGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=3.3e-21  Score=156.25  Aligned_cols=235  Identities=11%  Similarity=-0.003  Sum_probs=142.7

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |.++..+..++..+.+.|++++|+..|+.+..           ..+.+..+|..++.++.+.|++++|++.|+++.+.. 
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  124 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-----------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-  124 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence            45556667777777777777777777777633           223356677777777777777777777777776532 


Q ss_pred             CCccH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037499           83 VVPEE---IIFCNV------------ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI  147 (262)
Q Consensus        83 ~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  147 (262)
                       +.+.   ..+..+            ...+.+.|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|+++|++
T Consensus       125 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  202 (450)
T 2y4t_A          125 -PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKA  202 (450)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred             -CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             2333   444443            333666677777777777766654 44556666666666666666666666666


Q ss_pred             HHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHH------------HHHHHhhCCHHHHHHHHH
Q 037499          148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL------------IYGLCLELRVDEALKLKE  215 (262)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~  215 (262)
                      +....+.+..+|..++..|...|++++|...|+++..... .+...+..+            ...+.+.|++++|...|+
T Consensus       203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  281 (450)
T 2y4t_A          203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE  281 (450)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6665555666666666666666666666666666665421 122223222            455556666666666666


Q ss_pred             HHHHhcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          216 DMMRVYNVKPD-----AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       216 ~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++.+.   .|+     ..+|..+..++.+.|++++|.+.++++.+
T Consensus       282 ~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  323 (450)
T 2y4t_A          282 SVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ  323 (450)
T ss_dssp             HHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            65543   232     23455555555566666666666555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=9.6e-21  Score=147.12  Aligned_cols=235  Identities=8%  Similarity=-0.044  Sum_probs=111.2

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~   83 (262)
                      ++..+..++..+.+.|++++|...++.+..           ..+.+...|..+...+...| ++++|+..|++..+..  
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--  121 (330)
T 3hym_B           55 HASCLPVHIGTLVELNKANELFYLSHKLVD-----------LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--  121 (330)
T ss_dssp             CTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--
T ss_pred             ChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-----------hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--
Confidence            333444444444444444444444444421           12223444444555555555 4555555555544421  


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|...|++++|.+.+++.....+.+..++..+.
T Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  200 (330)
T 3hym_B          122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG  200 (330)
T ss_dssp             TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            2233444455555555555555555555554443 223344444555555555555555555555554444445555555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCC--------CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRR--------LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      ..+...|++++|...+++..+..        .+.+..++..+..++...|++++|...+++..+.  .+.+...+..+..
T Consensus       201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~  278 (330)
T 3hym_B          201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGY  278 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHH
Confidence            55555555555555555544321        0122334445555555555555555555555443  1223444555555


Q ss_pred             HHHhcCChhHHHHHHHHHHH
Q 037499          236 GLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       236 ~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +|...|++++|.+.+++..+
T Consensus       279 ~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          279 IHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHhccHHHHHHHHHHHHc
Confidence            55555555555555555443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=4.6e-20  Score=143.26  Aligned_cols=239  Identities=11%  Similarity=0.009  Sum_probs=208.9

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      +.++..+..++..+...|++++|+++|+.+..           ..+.+...+..++.++...|++++|+.+++++.+.. 
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-   86 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVME-----------KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-   86 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence            56777888999999999999999999999843           334466778888899999999999999999999853 


Q ss_pred             CCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           83 VVPEEIIFCNVISFYGRAR-LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                       +.+...+..+...+...| ++++|.+.|++..+.. +.+..+|..+..++...|++++|+..|++.....+.+...+..
T Consensus        87 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  164 (330)
T 3hym_B           87 -PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY  164 (330)
T ss_dssp             -TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence             556788999999999999 9999999999999875 5667889999999999999999999999999988877888888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-------CCCCHHHHHHHH
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-------VKPDAQVFASLI  234 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~  234 (262)
                      +...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+...       .+.+..++..+.
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la  243 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG  243 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence            9999999999999999999999874 34678899999999999999999999999887521       133467899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHc
Q 037499          235 KGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .+|...|++++|...+++..+.
T Consensus       244 ~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          244 HVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhh
Confidence            9999999999999999998874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=4.7e-20  Score=145.52  Aligned_cols=234  Identities=12%  Similarity=0.046  Sum_probs=200.0

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      ...+..++..+.+.|++++|+..|+.+..           ..+.+..+|..+..++...|++++|+..|+++.+..  +.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~  130 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-----------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PD  130 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHH-----------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CC
Confidence            46688999999999999999999999844           344578899999999999999999999999998853  56


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHh
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT---------------LLNAMLTCGKIDRMTDLFQIMEK  150 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~  150 (262)
                      +..++..+..++...|++++|++.|+++.+.. +.+...+..               .+..+...|++++|+..|+++..
T Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  209 (368)
T 1fch_A          131 NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  209 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence            78889999999999999999999999998865 333333321               23344489999999999999988


Q ss_pred             cCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499          151 YVSP--DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ  228 (262)
Q Consensus       151 ~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~  228 (262)
                      ..+.  +..++..+...|.+.|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.  .+.+..
T Consensus       210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~  286 (368)
T 1fch_A          210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIR  286 (368)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH
Confidence            8775  78999999999999999999999999998863 335778999999999999999999999999875  244678


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          229 VFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .+..+..+|.+.|++++|...++++.+.
T Consensus       287 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          287 SRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999998763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.87  E-value=7.2e-20  Score=141.97  Aligned_cols=235  Identities=9%  Similarity=-0.056  Sum_probs=200.8

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      +...+..++..+...|++++|+.+|+.+..           ..+.+..+|..+..++...|++++|+..++++.+..  +
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~   86 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ-----------AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P   86 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--c
Confidence            456678999999999999999999999843           334588899999999999999999999999999853  5


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL--------------LN-AMLTCGKIDRMTDLFQIME  149 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~  149 (262)
                      .+..++..+..++...|++++|++.++++.+.. +.+...+..+              .. .+...|++++|...++++.
T Consensus        87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  165 (327)
T 3cv0_A           87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL  165 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence            678889999999999999999999999998764 3444444444              33 4778899999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHH
Q 037499          150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV  229 (262)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~  229 (262)
                      ...+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.  .+.+...
T Consensus       166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~  242 (327)
T 3cv0_A          166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRV  242 (327)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence            9888889999999999999999999999999999874 335778999999999999999999999999875  2446788


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          230 FASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       230 ~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +..+..+|...|++++|.+.+++..+.
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999999999999999998764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.87  E-value=7.9e-23  Score=173.33  Aligned_cols=152  Identities=11%  Similarity=0.028  Sum_probs=123.7

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMS---SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSY  159 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~  159 (262)
                      ..-..+|+++|++|++.|++++|.++|++|.   ..|+.||+.|||+||++|++.|++++|.++|++|.+.|. ||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3446789999999999999999999998875   458899999999999999999999999999999999998 999999


Q ss_pred             HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC------HHHHHH
Q 037499          160 NILMHGCVVSRRL-EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD------AQVFAS  232 (262)
Q Consensus       160 ~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~  232 (262)
                      |++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.    .+++.++++..  ++.|+      ..+...
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~L  277 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKL  277 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHH
Confidence            9999999999985 78999999999999999999999998765554    34444444432  34443      334445


Q ss_pred             HHHHHHhcC
Q 037499          233 LIKGLCAVG  241 (262)
Q Consensus       233 l~~~~~~~g  241 (262)
                      |.+.|.+.+
T Consensus       278 L~dl~s~d~  286 (1134)
T 3spa_A          278 LRDVYAKDG  286 (1134)
T ss_dssp             THHHHCCCS
T ss_pred             HHHHHccCC
Confidence            555666544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.87  E-value=9.4e-22  Score=166.85  Aligned_cols=135  Identities=13%  Similarity=0.121  Sum_probs=117.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHH
Q 037499          121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEK---YVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT  196 (262)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  196 (262)
                      ...||+++|++|++.|+.++|.++|..|.+   .+. ||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            356899999999999999999999988764   345 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          197 LIYGLCLELR-VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       197 li~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      +|.++++.|+ .++|.++|++|.+. |+.||..+|+.++..+.+.    .+++.++++ ..++.|+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~  265 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP  265 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence            9999999998 57899999999988 9999999999998766554    444444444 4455554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.86  E-value=2.1e-19  Score=131.74  Aligned_cols=200  Identities=12%  Similarity=-0.012  Sum_probs=167.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT  127 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  127 (262)
                      +++...+..+...+.+.|++++|+..|++..+..  +.+...+..+..++.+.|++++|+..|++..+.. |.+...+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            4577889999999999999999999999999853  6678899999999999999999999999999876 667789999


Q ss_pred             HHHHHHhc-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHH
Q 037499          128 LLNAMLTC-----------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT  196 (262)
Q Consensus       128 ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  196 (262)
                      +..++...           |++++|+..|++..+..+.+...+..+..++...|++++|...|++..+..  .+...+..
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            99999999           999999999999999888889999999999999999999999999999987  68889999


Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       197 li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      +..++...|++++|+..|++..+.  .+.+...+..+..++...|++++|.+.+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999999999875  23467788899999999999999999988753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=6.9e-19  Score=138.01  Aligned_cols=241  Identities=9%  Similarity=0.006  Sum_probs=201.4

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC---CCHHHHHHH------------HHHHHhcCC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR---YNLLHYDLI------------ITKLGRAKM   66 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~   66 (262)
                      .|.++..+..++..+...|++++|...|+.+...           .+   .+...+..+            ...+...|+
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD  135 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3556667889999999999999999999998442           23   355566555            588999999


Q ss_pred             hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499           67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ  146 (262)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  146 (262)
                      +++|+..++++.+..  +.+..++..+..++...|++++|++.++++.+.. +.+..++..+...+...|++++|...|+
T Consensus       136 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  212 (359)
T 3ieg_A          136 YTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR  212 (359)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999853  6678889999999999999999999999999875 6778899999999999999999999999


Q ss_pred             HHHhcCCCChhHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCch----HHHHHHHHHHHhhCCHHHH
Q 037499          147 IMEKYVSPDACSYNI------------LMHGCVVSRRLEDAWKVFDEMLKRRLQPTL----VTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       147 ~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a  210 (262)
                      ...+..+.+...+..            +...+.+.|++++|...++++.+.... +.    ..+..+..++...|++++|
T Consensus       213 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence            999887766665543            367789999999999999999986432 22    2355577889999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      ...+++..+.  .+.+..++..+..+|...|++++|.+.+++..+  +.|+
T Consensus       292 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~  338 (359)
T 3ieg_A          292 IRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNEN  338 (359)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTT
T ss_pred             HHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence            9999999875  244788999999999999999999999999987  3454

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=1.2e-20  Score=148.90  Aligned_cols=235  Identities=12%  Similarity=0.017  Sum_probs=193.6

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      .|.++.++..++..+.+.|++++|+..|+.+..           ..+.+..+|..+..++...|++++|+..++++.+..
T Consensus        95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  163 (365)
T 4eqf_A           95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLE-----------LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN  163 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence            466777889999999999999999999999843           334578899999999999999999999999998742


Q ss_pred             CCCcc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           82 RVVPE-----------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus        82 ~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                         |+           ..++..+...+...|++++|+++|+++.+.. +.  +..++..+...|...|++++|++.|++.
T Consensus       164 ---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  239 (365)
T 4eqf_A          164 ---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA  239 (365)
T ss_dssp             ---HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               33           2233445888999999999999999999875 34  6889999999999999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC----
Q 037499          149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK----  224 (262)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----  224 (262)
                      .+..+.+..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+...-.    
T Consensus       240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  318 (365)
T 4eqf_A          240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ  318 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc
Confidence            99888889999999999999999999999999999863 3357889999999999999999999999987652110    


Q ss_pred             ------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          225 ------PDAQVFASLIKGLCAVGELSLALGFKEE  252 (262)
Q Consensus       225 ------p~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (262)
                            .+..+|..+..++...|+.+.+..+..+
T Consensus       319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          319 QVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             --------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence                  1357899999999999999988887664

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=1.6e-18  Score=132.70  Aligned_cols=226  Identities=13%  Similarity=0.120  Sum_probs=186.7

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEI   88 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~   88 (262)
                      ..+.+++...|+++.|+..++..              .+|+..++..+...+...++.++|++.++++... +. +.+..
T Consensus        38 ~~l~r~yi~~g~~~~al~~~~~~--------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~-~~~P~~~~  102 (291)
T 3mkr_A           38 VFLYRAYLAQRKYGVVLDEIKPS--------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSR-SVDVTNTT  102 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHSCTT--------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS-CCCCSCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHhccc--------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-ccCCCCHH
Confidence            45788999999999999988663              2357889999999999999999999999999875 33 44677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH--HHHHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS--YNILMHGC  166 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~  166 (262)
                      .+..+..++.+.|++++|++.+++      +.+..++..++.+|.+.|++++|.+.|+++....+.+...  ...++..+
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~  176 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLA  176 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH
Confidence            788888999999999999999987      4677899999999999999999999999998876533322  12334555


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH-
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL-  245 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-  245 (262)
                      ...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+.  .+-+..++..++..+...|+.++ 
T Consensus       177 ~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             hCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHH
Confidence            5669999999999999987 3557889999999999999999999999999875  23477789999999999999876 


Q ss_pred             HHHHHHHHHHcCCCCC
Q 037499          246 ALGFKEEMVRNKIEMD  261 (262)
Q Consensus       246 a~~~~~~m~~~g~~pd  261 (262)
                      +.++++++.+  +.|+
T Consensus       254 a~~~~~~~~~--~~P~  267 (291)
T 3mkr_A          254 TNRYLSQLKD--AHRS  267 (291)
T ss_dssp             HHHHHHHHHH--HCTT
T ss_pred             HHHHHHHHHH--hCCC
Confidence            5788998877  4444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=5.4e-20  Score=145.21  Aligned_cols=237  Identities=11%  Similarity=0.008  Sum_probs=198.1

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      .|.++..+..++..+.+.|++++|+..|+.+..           ..+.+..+|..+...+...|++++|++.++++.+..
T Consensus        94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  162 (368)
T 1fch_A           94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLE-----------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT  162 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            466677789999999999999999999999843           334578899999999999999999999999998853


Q ss_pred             CCCccHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 037499           82 RVVPEEIIFCN---------------VISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTCGKIDRMTDL  144 (262)
Q Consensus        82 ~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~  144 (262)
                        +.+...+..               .+..+...|++++|++.|+++.+.. +.  +..++..+..+|...|++++|+..
T Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~  239 (368)
T 1fch_A          163 --PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDC  239 (368)
T ss_dssp             --TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             --cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence              222222221               2333448999999999999998875 33  578899999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 037499          145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK  224 (262)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  224 (262)
                      |+++....+.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+...-.
T Consensus       240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999998888889999999999999999999999999998864 3467789999999999999999999999987642111


Q ss_pred             ---------CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          225 ---------PDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       225 ---------p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                               ....+|..+..+|...|+.++|..++.+.
T Consensus       319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence                     12688999999999999999999987643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=1.8e-18  Score=135.68  Aligned_cols=233  Identities=11%  Similarity=-0.017  Sum_probs=198.6

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE   86 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   86 (262)
                      ..+..++..+...|++++|+..|+.+..           ..+.+..+|..+..++...|++++|+..++++.+..  +.+
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~   70 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVD-----------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDF   70 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCc
Confidence            3567889999999999999999999843           344578899999999999999999999999999853  556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhc
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ---RTVKSFNTL------------LNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                      ...+..+..++...|++++|.+.|+++.+.. +   .+...+..+            ...+...|++++|+++++++...
T Consensus        71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  149 (359)
T 3ieg_A           71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV  149 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            7889999999999999999999999999864 3   345555555            57889999999999999999998


Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 037499          152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA  231 (262)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~  231 (262)
                      .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..  +.+...+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~  226 (359)
T 3ieg_A          150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA  226 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHH
Confidence            88889999999999999999999999999999874 4467889999999999999999999999998752  22333332


Q ss_pred             ------------HHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          232 ------------SLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       232 ------------~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                                  .+...+.+.|++++|...++++.+.
T Consensus       227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  263 (359)
T 3ieg_A          227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT  263 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                        2366789999999999999998874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.85  E-value=4.9e-20  Score=142.91  Aligned_cols=236  Identities=9%  Similarity=-0.025  Sum_probs=197.4

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      .|.++..+..++..+.+.|++++|.+.|+.+..           ..+.+..+|..+...+...|++++|++.++++.+..
T Consensus        51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  119 (327)
T 3cv0_A           51 APEREEAWRSLGLTQAENEKDGLAIIALNHARM-----------LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  119 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            355666788899999999999999999999843           334578899999999999999999999999998753


Q ss_pred             CCCccHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499           82 RVVPEEIIFCNV--------------IS-FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ  146 (262)
Q Consensus        82 ~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  146 (262)
                        +.+...+..+              .. .+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++
T Consensus       120 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  196 (327)
T 3cv0_A          120 --PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLR  196 (327)
T ss_dssp             --TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence              2333333333              22 3778899999999999999876 5678899999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-
Q 037499          147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-  225 (262)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-  225 (262)
                      ++....+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. ... 
T Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~  274 (327)
T 3cv0_A          197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGT  274 (327)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSC
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cccc
Confidence            9998888889999999999999999999999999998864 3367788999999999999999999999988752 111 


Q ss_pred             ----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          226 ----------DAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       226 ----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                                +..+|..+..++.+.|+.++|..++++.
T Consensus       275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                      4678999999999999999999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.85  E-value=1.6e-19  Score=132.34  Aligned_cols=201  Identities=15%  Similarity=0.047  Sum_probs=165.9

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |+++..+..++..+.+.|++++|+..|+....           ..+.+...|..+...+.+.|++++|+..+++..+.. 
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-   69 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-----------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-   69 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            77888899999999999999999999999843           455688999999999999999999999999999863 


Q ss_pred             CCccHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           83 VVPEEIIFCNVISFYGRA-----------RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                       |.+...+..+..++...           |++++|+..|++..+.. |.+...+..+..++...|++++|+..|++..+.
T Consensus        70 -P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           70 -PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence             56788899999999999           99999999999999875 567788999999999999999999999999988


Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      . .+...+..+..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++...
T Consensus       148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred             c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            8 889999999999999999999999999999874 33677888899999999999999999987753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.84  E-value=1e-18  Score=132.23  Aligned_cols=238  Identities=9%  Similarity=0.004  Sum_probs=196.5

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      ++..+...+..+...|++++|+..|+....           ..+.+...|..+..++...|++++|+..+++..+.. -.
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~   69 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEA-----------KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NA   69 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHH-----------TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CT
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-Cc
Confidence            456778889999999999999999999844           233466689999999999999999999999998742 11


Q ss_pred             c--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           85 P--EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        85 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      +  ...+|..+..++...|++++|++.|++..+.. +.+..++..+..+|...|++++|+..|++..+..+.+...|..+
T Consensus        70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  148 (272)
T 3u4t_A           70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL  148 (272)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            2  24458899999999999999999999999875 56778999999999999999999999999998877888888888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC---HHHHHHHHHHHHHhcCCCCC------HHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR---VDEALKLKEDMMRVYNVKPD------AQVFASL  233 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~p~------~~~~~~l  233 (262)
                      ...+...+++++|...|+++.+.. +.+...+..+..++...|+   +++|...+++..+...-.|+      ..+|..+
T Consensus       149 ~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  227 (272)
T 3u4t_A          149 GQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI  227 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            834444569999999999999864 2346777778888888888   88899999988775333344      2578889


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHc
Q 037499          234 IKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ...|...|++++|.+.+++..+.
T Consensus       228 ~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          228 AYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999999999873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.3e-18  Score=129.01  Aligned_cols=226  Identities=10%  Similarity=0.052  Sum_probs=194.1

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCc
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVP   85 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~   85 (262)
                      ..+..++..+...|++++|+..|+.....           . .+..+|..+..++...|++++|+..+++..+... ..+
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   73 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-----------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA   73 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence            35678899999999999999999998543           2 6788999999999999999999999999887420 111


Q ss_pred             c----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           86 E----EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        86 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                      +    ..++..+..++...|++++|++.|++..+..  |+.       ..+...|++++|...++.+....+.+...+..
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  144 (258)
T 3uq3_A           74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARL  144 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            1    5788999999999999999999999999863  442       45667788999999999999887777889999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG  241 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  241 (262)
                      +...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.  .+.+...|..+..+|...|
T Consensus       145 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          145 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999874 336788999999999999999999999999875  2446788999999999999


Q ss_pred             ChhHHHHHHHHHHHc
Q 037499          242 ELSLALGFKEEMVRN  256 (262)
Q Consensus       242 ~~~~a~~~~~~m~~~  256 (262)
                      ++++|.+.+++..+.
T Consensus       222 ~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          222 EYASALETLDAARTK  236 (258)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHh
Confidence            999999999998764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.83  E-value=1.8e-17  Score=124.02  Aligned_cols=200  Identities=8%  Similarity=-0.033  Sum_probs=177.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...|..+...+...|++++|+..|+++.+..  +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence            6788999999999999999999999998853  5678889999999999999999999999998875 567788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD  208 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  208 (262)
                      .|...|++++|.++++++..  ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999988  444567889999999999999999999999998864 335778889999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +|...++++.+  ..+.+...+..+...+...|+.++|.++++++.+.
T Consensus       193 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          193 PARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999976  33457778888999999999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.82  E-value=5.3e-19  Score=145.43  Aligned_cols=234  Identities=13%  Similarity=0.035  Sum_probs=204.2

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      +..+..++..+...|++++|...|+.+...           . |+...|..+...+...|++++|+..++++.+.  .+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~  302 (514)
T 2gw1_A          237 AISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----------F-PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSN  302 (514)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----------C-CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----------C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcC
Confidence            446778899999999999999999998543           1 22888999999999999999999999999875  355


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      +..++..+..++...|++++|+..|++..+.. +.+..++..+...+...|++++|+.+++.+....+.+..++..+...
T Consensus       303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  381 (514)
T 2gw1_A          303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI  381 (514)
T ss_dssp             CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            67789999999999999999999999999875 55778899999999999999999999999998888888999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCC-Cc----hHHHHHHHHHHHh---hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499          166 CVVSRRLEDAWKVFDEMLKRRLQ-PT----LVTFGTLIYGLCL---ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL  237 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  237 (262)
                      +.+.|++++|...++++.+.... ++    ...+..+...+..   .|++++|...++++.+.  .+.+..++..+..+|
T Consensus       382 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~  459 (514)
T 2gw1_A          382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMK  459 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            99999999999999999875221 11    3388889999999   99999999999999875  244678889999999


Q ss_pred             HhcCChhHHHHHHHHHHHc
Q 037499          238 CAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       238 ~~~g~~~~a~~~~~~m~~~  256 (262)
                      .+.|++++|.+.+++..+.
T Consensus       460 ~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          460 LQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            9999999999999998874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=3.9e-18  Score=126.72  Aligned_cols=204  Identities=11%  Similarity=0.048  Sum_probs=162.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH
Q 037499           47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN  126 (262)
Q Consensus        47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  126 (262)
                      .......|..+...+...|++++|+..|+++.+.  .+.+...+..+..++...|++++|++.|+++.+.. +.+..++.
T Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~   95 (243)
T 2q7f_A           19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY   95 (243)
T ss_dssp             -----------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence            3456778888999999999999999999999874  35678889999999999999999999999998875 56788899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499          127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR  206 (262)
Q Consensus       127 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  206 (262)
                      .+...+...|++++|.+.++++.+..+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999888888999999999999999999999999998864 3367788889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       207 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +++|...++++.+.  .+.+..++..+..+|...|++++|.+.++++.+.
T Consensus       175 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          175 LDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            99999999999875  2446788999999999999999999999999874

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=4.6e-18  Score=124.72  Aligned_cols=200  Identities=10%  Similarity=-0.016  Sum_probs=144.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      +...|..+...+...|++++|++.++++.+..  +.+...+..+..++...|++++|.+.|+++.+.. +.+..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            56677777777788888888888887777642  4456677777777778888888888887777664 45666777777


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499          130 NAMLTC-GKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR  206 (262)
Q Consensus       130 ~~~~~~-g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  206 (262)
                      ..+... |++++|...++++..  ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence            777787 888888888877776  222345677777777788888888888887777653 2246667777777778888


Q ss_pred             HHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          207 VDEALKLKEDMMRVYNVK-PDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       207 ~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +++|...++++.+.  .+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus       163 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          163 LGDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            88888888777664  12 4556666666777777888888777777765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=3.7e-17  Score=119.84  Aligned_cols=168  Identities=11%  Similarity=-0.078  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC-ChhhHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-RLLEHALQVFDEMSSFNVQR-TVKSFNT  127 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~  127 (262)
                      +...|..+...+...|++++|++.++++.+..  +.+..++..+...+... |++++|.+.++++.+.+..| +...+..
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  118 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN  118 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence            45555666666666666666666666665532  33455556666666666 66666666666665521112 2345555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV  207 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  207 (262)
                      +..++...|++++|+..++++.+..+.+...+..+...+.+.|++++|...++++.+.....+...+..+...+...|+.
T Consensus       119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (225)
T 2vq2_A          119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA  198 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence            66666666666666666666655555555566666666666666666666666665542213444555555555566666


Q ss_pred             HHHHHHHHHHHH
Q 037499          208 DEALKLKEDMMR  219 (262)
Q Consensus       208 ~~a~~~~~~~~~  219 (262)
                      +.|..+++.+.+
T Consensus       199 ~~a~~~~~~~~~  210 (225)
T 2vq2_A          199 QAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=2.1e-18  Score=128.19  Aligned_cols=202  Identities=9%  Similarity=0.020  Sum_probs=162.7

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      ..+..+..++..+...|++++|...|+.+..           ..+.+...+..+...+...|++++|+..++++.+..  
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--   87 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-----------ENKEDAIPYINFANLLSSVNELERALAFYDKALELD--   87 (243)
T ss_dssp             ---------------------CCTTHHHHHT-----------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-----------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence            3456678888999999999999999999844           344578899999999999999999999999998853  


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....+.+...+..+.
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  166 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG  166 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            5578889999999999999999999999998876 667888999999999999999999999999988888889999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ..+.+.|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus       167 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          167 MCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            99999999999999999998874 345778899999999999999999999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=3.7e-18  Score=127.72  Aligned_cols=201  Identities=10%  Similarity=-0.047  Sum_probs=176.1

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      +..+..++..+...|++++|.+.|+.+..           ..+.+..+|..+...+...|++++|++.++++.+..  +.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~  103 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE-----------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SR  103 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cC
Confidence            34567888999999999999999999843           334478899999999999999999999999998853  55


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      +..++..+...+...|++++|+++|+++.+.+..| +...+..+..++...|++++|...|++.....+.+...+..+..
T Consensus       104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  183 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD  183 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            78889999999999999999999999998732234 56788889999999999999999999999888888899999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus       184 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          184 LLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999999999998863 346778888889999999999999999999875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.81  E-value=1.1e-18  Score=137.94  Aligned_cols=233  Identities=11%  Similarity=-0.003  Sum_probs=200.9

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM-FDEVQQILHQLKHDTRV   83 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~   83 (262)
                      +...+..+..++.+.|++++|++.|+.+..           ..+.+..+|+.+..++...|+ +++|+..|+++.+..  
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-----------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--  162 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE-----------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--  162 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHH-----------hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--
Confidence            344578889999999999999999999843           445588999999999999997 999999999999863  


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +-+...|..+..++...|++++|+..|+++.+.. +-+..+|..+..++.+.|++++|+..|+++.+..+.+...|+.+.
T Consensus       163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg  241 (382)
T 2h6f_A          163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY  241 (382)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5678899999999999999999999999999886 678899999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCChhHH-----HHHHHHHHHCCCCCchHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          164 HGCVV-SRRLEDA-----WKVFDEMLKRRLQPTLVTFGTLIYGLCLEL--RVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       164 ~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      .++.+ .|..++|     +..+++...... -+...|..+...+...|  ++++|++.+.++ +  ..+.+...+..+..
T Consensus       242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~  317 (382)
T 2h6f_A          242 FVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVD  317 (382)
T ss_dssp             HHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHH
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHH
Confidence            99999 6665887     588888888642 25678888888888888  689999999887 3  44557788999999


Q ss_pred             HHHhcC---------ChhHHHHHHHHH-HH
Q 037499          236 GLCAVG---------ELSLALGFKEEM-VR  255 (262)
Q Consensus       236 ~~~~~g---------~~~~a~~~~~~m-~~  255 (262)
                      +|.+.|         ..++|+++++++ .+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          318 IYEDMLENQCDNKEDILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            998874         258999999998 54

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=2e-17  Score=126.52  Aligned_cols=218  Identities=10%  Similarity=0.021  Sum_probs=179.0

Q ss_pred             HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN--LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      +......|+++.|+..++.....            .|+  ......+.++|...|+++.|+..++.     .-+|+..++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~------------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~   68 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS------------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAV   68 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC------------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHH
Confidence            45566799999999999876332            222  34666788999999999999986654     136788899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      ..+...+...++.++|++.++++...+..| +...+..+..++...|++++|++.+++     +.+...+..++..+.+.
T Consensus        69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~  143 (291)
T 3mkr_A           69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKL  143 (291)
T ss_dssp             HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHC
Confidence            999999999999999999999998776434 566777788999999999999999988     57888999999999999


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHH---HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTF---GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA  246 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  246 (262)
                      |++++|...|+++.+..  |+....   ..++..+...|++++|..+|+++.+.  .+.+...++.+..++.+.|++++|
T Consensus       144 g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA  219 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAA  219 (291)
T ss_dssp             TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999874  443222   22334444569999999999999885  456888999999999999999999


Q ss_pred             HHHHHHHHHc
Q 037499          247 LGFKEEMVRN  256 (262)
Q Consensus       247 ~~~~~~m~~~  256 (262)
                      .+.+++..+.
T Consensus       220 ~~~l~~al~~  229 (291)
T 3mkr_A          220 EGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998874

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.81  E-value=9.7e-17  Score=121.61  Aligned_cols=227  Identities=11%  Similarity=-0.027  Sum_probs=197.2

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHH
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR----AKMFDEVQQILHQL   77 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~   77 (262)
                      +|.++.++..++..+...|++++|+..|+....             +.+...+..+...+..    .+++++|+..|++.
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a   68 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   68 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence            456677888999999999999999999998833             2366788999999999    99999999999999


Q ss_pred             HhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 037499           78 KHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIME  149 (262)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~  149 (262)
                      .+. +   +...+..+...|..    .+++++|++.|++..+.+   +..++..+...|..    .+++++|+..|++..
T Consensus        69 ~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A           69 CDL-N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             HHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             HHC-C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence            885 3   67788899999999    999999999999999865   67789999999999    999999999999998


Q ss_pred             hcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhc
Q 037499          150 KYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRVY  221 (262)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~  221 (262)
                      +.+  +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+. 
T Consensus       142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-  215 (273)
T 1ouv_A          142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-  215 (273)
T ss_dssp             HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-
T ss_pred             hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-
Confidence            865  66778888888988    999999999999999875   56778888888999    99999999999999874 


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 037499          222 NVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNK  257 (262)
Q Consensus       222 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g  257 (262)
                      +   +...+..+...|..    .++.++|.+.+++..+.|
T Consensus       216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            2   36778888889998    999999999999998865

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.81  E-value=5.2e-18  Score=139.50  Aligned_cols=160  Identities=14%  Similarity=0.020  Sum_probs=89.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ..+...+...|++++|.+.|+++.+..  |+..++..+..++...|++++|...++++....+.+..++..+...+...|
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence            334444444555555555555544433  114445555555555555555555555555544445555666666666666


Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK  250 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  250 (262)
                      ++++|...++++.+... .+...+..+...+...|++++|...++++.+.  .+.+..++..+...|...|++++|...+
T Consensus       319 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             CTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            66666666666665432 24455556666666666666666666666553  1223455666666666666666666666


Q ss_pred             HHHHH
Q 037499          251 EEMVR  255 (262)
Q Consensus       251 ~~m~~  255 (262)
                      +++.+
T Consensus       396 ~~a~~  400 (514)
T 2gw1_A          396 DLAIE  400 (514)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=1.7e-17  Score=137.27  Aligned_cols=239  Identities=11%  Similarity=-0.004  Sum_probs=177.6

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++..+..++.++.+.|++++|++.|+.+..           ..+.+..+|..+..++...|++++|+..|+.+....
T Consensus        55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  123 (537)
T 3fp2_A           55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALE-----------IKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNG  123 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC---
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence            456667778888888888888888888888733           334467788888888888888888877664331100


Q ss_pred             --------------------------------------------------------------------------------
Q 037499           82 --------------------------------------------------------------------------------   81 (262)
Q Consensus        82 --------------------------------------------------------------------------------   81 (262)
                                                                                                      
T Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  203 (537)
T 3fp2_A          124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL  203 (537)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------CCCcc--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499           82 --------------------------RVVPE--------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT  127 (262)
Q Consensus        82 --------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  127 (262)
                                                ...|+        ..++..+...+...|++++|.+.|++..+..  |+..++..
T Consensus       204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~  281 (537)
T 3fp2_A          204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIF  281 (537)
T ss_dssp             HTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHH
Confidence                                      00111        1235555566777788888888888887763  45777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV  207 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  207 (262)
                      +...+...|++++|+..|+++....+.+..++..+...+...|++++|...++++.+... .+...+..+...+...|++
T Consensus       282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~  360 (537)
T 3fp2_A          282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKF  360 (537)
T ss_dssp             HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence            888888888888888888888887777788888888888888888888888888887642 2456777888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       208 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ++|...++++.+.  .+.+...+..+..+|...|++++|.+.++++.+.
T Consensus       361 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          361 TESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            8888888888764  2335667788888888888888888888887653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=4.3e-17  Score=134.85  Aligned_cols=232  Identities=12%  Similarity=0.014  Sum_probs=199.1

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      ++..++..+...|++++|+..|+.+...            .|+...|..+...+...|++++|+..++++.+..  +.+.
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~  310 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINL------------HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYP  310 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhc------------CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCH
Confidence            3567778888999999999999998442            3457889999999999999999999999998853  5668


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      .++..+..++...|++++|++.|++..+.. +.+..++..+..++...|++++|...++++.+..+.+...+..+...+.
T Consensus       311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            889999999999999999999999999875 5567889999999999999999999999999988888889999999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCC-----CchHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 037499          168 VSRRLEDAWKVFDEMLKRRLQ-----PTLVTFGTLIYGLCLE----------LRVDEALKLKEDMMRVYNVKPDAQVFAS  232 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~  232 (262)
                      ..|++++|...|+++.+....     .....+......+.+.          |++++|...|+++.+.  .+.+...+..
T Consensus       390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~  467 (537)
T 3fp2_A          390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIG  467 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            999999999999998875211     1122244455677777          9999999999999875  2446788999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHc
Q 037499          233 LIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       233 l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +..+|.+.|++++|.+.|++..+.
T Consensus       468 l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          468 LAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999999999999998874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=4e-19  Score=140.11  Aligned_cols=206  Identities=11%  Similarity=0.055  Sum_probs=94.1

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      +++.+|..|+.++.+.|++++|++.|.+.                +|..+|..++..+...|++++|+..++...+.   
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika----------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---   90 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---   90 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC----------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---
Confidence            34569999999999999999999999764                27779999999999999999999988877763   


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|...|..+        ..|..++
T Consensus        91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA  155 (449)
T 1b89_A           91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA  155 (449)
T ss_dssp             ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------TCHHHHH
T ss_pred             CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHH
Confidence            4557889999999999999999988874       467789999999999999999999999987        4799999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL  243 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  243 (262)
                      .++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......      +..++.-...++..|.+.|.+
T Consensus       156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCH
Confidence            9999999999999999988      2789999999999999999999655443      223444456788999999999


Q ss_pred             hHHHHHHHHHHH
Q 037499          244 SLALGFKEEMVR  255 (262)
Q Consensus       244 ~~a~~~~~~m~~  255 (262)
                      ++|..+++....
T Consensus       224 eEai~lLe~aL~  235 (449)
T 1b89_A          224 EELITMLEAALG  235 (449)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            999999988753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.77  E-value=2.8e-17  Score=124.37  Aligned_cols=230  Identities=10%  Similarity=-0.032  Sum_probs=183.3

Q ss_pred             HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      .+...+...|++++|+..|+.+.....       ...+.+..+|..+...+...|++++|+..|+++.+..  +.+..++
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~   80 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILASRA-------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVF   80 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTSSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred             ceeeccCccchHHHHHHHHHHHHhccc-------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHH
Confidence            333445667999999999998855310       0112367889999999999999999999999999853  5678899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ..+..++...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...|+++....+.+.. ....+..+...|
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~  158 (275)
T 1xnf_A           81 NYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-RSLWLYLAEQKL  158 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHhc
Confidence            999999999999999999999999875 567889999999999999999999999999887664443 333444556779


Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChhH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-----AQVFASLIKGLCAVGELSL  245 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~  245 (262)
                      ++++|...+++..... +++...+. ++..+...++.++|...+++..+.   .|+     ..++..+..+|...|++++
T Consensus       159 ~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~  233 (275)
T 1xnf_A          159 DEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDS  233 (275)
T ss_dssp             CHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHH
Confidence            9999999998887763 33444444 667778888899999998887532   332     5778889999999999999


Q ss_pred             HHHHHHHHHHc
Q 037499          246 ALGFKEEMVRN  256 (262)
Q Consensus       246 a~~~~~~m~~~  256 (262)
                      |...+++..+.
T Consensus       234 A~~~~~~al~~  244 (275)
T 1xnf_A          234 ATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            99999999874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=1.2e-15  Score=117.75  Aligned_cols=219  Identities=11%  Similarity=0.076  Sum_probs=181.0

Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhcCCCCccHH
Q 037499           23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR-------AKMF-------DEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus        23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      ++|..+|++...           ..+.++..|..++..+..       .|++       ++|..+|++..+.. .+.+..
T Consensus        33 ~~a~~~~~~al~-----------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~  100 (308)
T 2ond_A           33 KRVMFAYEQCLL-----------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNML  100 (308)
T ss_dssp             HHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHH
T ss_pred             HHHHHHHHHHHH-----------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHH
Confidence            788899998833           455688899999888764       5886       89999999999721 234567


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT-VK-SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      .|..++..+.+.|++++|.++|++..+.  .|+ .. +|..++..+.+.|++++|..+|++..+..+.+...|...+...
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  178 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            8999999999999999999999999985  443 44 8999999999999999999999999988776666776554443


Q ss_pred             H-hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCh
Q 037499          167 V-VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP--DAQVFASLIKGLCAVGEL  243 (262)
Q Consensus       167 ~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~  243 (262)
                      . ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++......+.|  ....|..++..+.+.|+.
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~  257 (308)
T 2ond_A          179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            3 3799999999999998863 33678889999999999999999999999987422455  467889999999999999


Q ss_pred             hHHHHHHHHHHHc
Q 037499          244 SLALGFKEEMVRN  256 (262)
Q Consensus       244 ~~a~~~~~~m~~~  256 (262)
                      +.|..+++++.+.
T Consensus       258 ~~a~~~~~~a~~~  270 (308)
T 2ond_A          258 ASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998874

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.75  E-value=2.3e-17  Score=124.81  Aligned_cols=225  Identities=9%  Similarity=-0.130  Sum_probs=178.6

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      ++..+..++..+...|++++|+..|+.+..           ..+.+..+|..+...+...|++++|+..|+++.+..  +
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~  108 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALA-----------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--P  108 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--c
Confidence            445678899999999999999999999843           334578899999999999999999999999999853  5


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      .+..++..+..++.+.|++++|.+.|+++.+..  |+.......+..+...|++++|...++......+++...+. ++.
T Consensus       109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~  185 (275)
T 1xnf_A          109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVE  185 (275)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHH
T ss_pred             cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHH
Confidence            567889999999999999999999999999864  44444555556667789999999999888877776666655 777


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG  241 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  241 (262)
                      .+...++.++|...++.........   +...+..+...|.+.|++++|...|++..+.   .|+.  +.....++...|
T Consensus       186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~--~~~~~~~~~~l~  260 (275)
T 1xnf_A          186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN--FVEHRYALLELS  260 (275)
T ss_dssp             HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT--CHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh--HHHHHHHHHHHH
Confidence            7788888999999999887653211   2578888999999999999999999999853   4532  223355677888


Q ss_pred             ChhHHHHHH
Q 037499          242 ELSLALGFK  250 (262)
Q Consensus       242 ~~~~a~~~~  250 (262)
                      ++++|++-+
T Consensus       261 ~~~~a~~~~  269 (275)
T 1xnf_A          261 LLGQDQDDL  269 (275)
T ss_dssp             HHHHC----
T ss_pred             HHHhhHHHH
Confidence            888888765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.74  E-value=2.1e-15  Score=107.32  Aligned_cols=166  Identities=12%  Similarity=0.055  Sum_probs=132.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      ++.+|..+...+.+.|++++|++.|++..+..  |-+..++..+..+|.+.|++++|++.+....... +.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence            66778888888888888888888888887753  5567778888888888888888888888887765 55666777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      ..+...++++.|...+.+.....+.+...+..+...|.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            888888888888888888887777778888888888888888888888888887764 2356677778888888888888


Q ss_pred             HHHHHHHHHH
Q 037499          210 ALKLKEDMMR  219 (262)
Q Consensus       210 a~~~~~~~~~  219 (262)
                      |++.|++..+
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888888775

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.74  E-value=1.5e-15  Score=108.10  Aligned_cols=167  Identities=10%  Similarity=0.067  Sum_probs=151.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      +..+|..+...|.+.|++++|++.|++..+.. |-+..++..+..+|.+.|++++|+..+.......+.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            56789999999999999999999999999876 66788999999999999999999999999999888889999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499          166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL  245 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  245 (262)
                      +...++++.+...+.+..... +.+...+..+...+.+.|++++|++.|++..+.  .+.+..+|..+..+|.+.|++++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHH
Confidence            999999999999999998864 336778888999999999999999999999875  23467889999999999999999


Q ss_pred             HHHHHHHHHHc
Q 037499          246 ALGFKEEMVRN  256 (262)
Q Consensus       246 a~~~~~~m~~~  256 (262)
                      |++.|++.++.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999998873

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.74  E-value=1.4e-15  Score=114.80  Aligned_cols=220  Identities=10%  Similarity=-0.003  Sum_probs=179.0

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++..+..++..+...|++++|++.|+.....+.        .......+|..+...+...|++++|+..|++..+..
T Consensus        33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~  104 (272)
T 3u4t_A           33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN--------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD  104 (272)
T ss_dssp             TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC--------chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            567788999999999999999999999999855311        112234568999999999999999999999999863


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                        +.+..++..+..+|...|++++|++.|++..+.. +.+..++..+...+...+++++|.+.|++..+..+.+...+..
T Consensus       105 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  181 (272)
T 3u4t_A          105 --TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW  181 (272)
T ss_dssp             --TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence              5567789999999999999999999999998874 5667788888734445569999999999999988888889999


Q ss_pred             HHHHHHhcCC---hhHHHHHHHHHHHCC-CCCc------hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHH
Q 037499          162 LMHGCVVSRR---LEDAWKVFDEMLKRR-LQPT------LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVF  230 (262)
Q Consensus       162 l~~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~  230 (262)
                      +...+...|+   +++|...+++..+.. ..|+      ..+|..+...|...|++++|.+.|++..+.   .| +...+
T Consensus       182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~  258 (272)
T 3u4t_A          182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL---DPTNKKAI  258 (272)
T ss_dssp             HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred             HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CccHHHHH
Confidence            9999999998   888999999888652 2233      257778888999999999999999999875   44 44454


Q ss_pred             HHHHH
Q 037499          231 ASLIK  235 (262)
Q Consensus       231 ~~l~~  235 (262)
                      ..+..
T Consensus       259 ~~l~~  263 (272)
T 3u4t_A          259 DGLKM  263 (272)
T ss_dssp             HHHC-
T ss_pred             HHhhh
Confidence            44433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=9.8e-18  Score=129.00  Aligned_cols=245  Identities=12%  Similarity=0.032  Sum_probs=172.0

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD-----   80 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----   80 (262)
                      ..++..++..+...|++++|+..|+.+......   ......+....++..+...+...|++++|+..+++..+.     
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK---TSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            345678899999999999999999988441000   000022345678899999999999999999999998764     


Q ss_pred             -CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 037499           81 -TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF------NV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-  151 (262)
Q Consensus        81 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-  151 (262)
                       ...+....++..+...|...|++++|.+.|++..+.      +. +....++..+...+...|++++|++++++.... 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             112344678889999999999999999999988764      22 223467888999999999999999999988765 


Q ss_pred             -------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-------CCCch-------HHHHHHHHHHHhhCCHHHH
Q 037499          152 -------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-------LQPTL-------VTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       152 -------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~a  210 (262)
                             .+....++..+...|...|++++|...++++.+..       ..+..       ..+..+...+...+.+.++
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  263 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY  263 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence                   22445678899999999999999999999988631       11111       1122222333444555555


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ...+......  .+.+..++..+..+|.+.|++++|.+++++..+
T Consensus       264 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          264 GGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             C-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6666666532  223556788999999999999999999999876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.72  E-value=5.1e-16  Score=126.75  Aligned_cols=215  Identities=12%  Similarity=-0.029  Sum_probs=185.4

Q ss_pred             ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 037499           21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF-DEVQQILHQLKHDTRVVPEEIIFCNVISFYGR   99 (262)
Q Consensus        21 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (262)
                      .+++++..++....           ..+.+...|..+...+...|++ ++|++.|++..+..  +.+...|..+..+|.+
T Consensus        83 ~~~~al~~l~~~~~-----------~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           83 EMEKTLQQMEEVLG-----------SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHHT-----------TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-----------cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Confidence            36667777776522           3345888999999999999999 99999999999863  5568899999999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-
Q 037499          100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC---------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS-  169 (262)
Q Consensus       100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  169 (262)
                      .|++++|++.|++..+..  |+..++..+..+|...         |++++|+..|++..+..+.+...|..+..+|... 
T Consensus       150 ~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  227 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY  227 (474)
T ss_dssp             HTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999874  6678899999999999         9999999999999998888899999999999999 


Q ss_pred             -------CChhHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499          170 -------RRLEDAWKVFDEMLKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV  240 (262)
Q Consensus       170 -------g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  240 (262)
                             |++++|...|++..+....  .+...|..+..+|...|++++|...|++..+.  .+-+...+..+..++...
T Consensus       228 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence                   9999999999999986321  37788999999999999999999999999875  233566788888999999


Q ss_pred             CChhHHHHHHHH
Q 037499          241 GELSLALGFKEE  252 (262)
Q Consensus       241 g~~~~a~~~~~~  252 (262)
                      |++++|++.+.+
T Consensus       306 g~~~eAi~~~~~  317 (474)
T 4abn_A          306 SRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999875544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=7e-15  Score=109.91  Aligned_cols=193  Identities=13%  Similarity=0.031  Sum_probs=165.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCC----hh
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV--QRT----VK  123 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~  123 (262)
                      ....|..+...+...|++++|+..|++..+..   .+..++..+..++...|++++|++.+++..+..-  .++    ..
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            45678899999999999999999999999863   7788899999999999999999999999886531  111    57


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      ++..+..++...|++++|+..|++.....+ +       ...+.+.|++++|...++.+.... +.+...+..+...+..
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR-T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT  151 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCc-h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence            889999999999999999999999987543 3       245667889999999999999863 2356688888999999


Q ss_pred             hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .|++++|...++++.+.  .+.+..+|..+..+|...|++++|...+++..+.
T Consensus       152 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99999999999999875  2446788999999999999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.69  E-value=9.3e-15  Score=115.62  Aligned_cols=198  Identities=8%  Similarity=0.037  Sum_probs=173.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-LEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      +...|..+...+.+.|++++|++.++++.+..  +-+..+|..+..++...|+ +++|++.|++..+.. +-+..+|..+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence            45788899999999999999999999999863  5668889999999999997 999999999999886 6678999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh-hCCH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL-ELRV  207 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~  207 (262)
                      ..++...|++++|+..|+++....+.+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999999999999999997543 67888889888888 6665


Q ss_pred             HHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHH
Q 037499          208 DEA-----LKLKEDMMRVYNVKPDAQVFASLIKGLCAVG--ELSLALGFKEEM  253 (262)
Q Consensus       208 ~~a-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~m  253 (262)
                      ++|     +..+++....  .+-+...|..+..++...|  ++++|.+.+.++
T Consensus       252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            777     5888888864  2336778888888898888  689999998887

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.69  E-value=2.1e-14  Score=101.78  Aligned_cols=161  Identities=12%  Similarity=0.013  Sum_probs=80.6

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII   89 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   89 (262)
                      ..++..+...|++++|...|+.+..           ..+.+..++..+...+...|++++|...++++.+..  +.+..+
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~   78 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYD-----------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKV   78 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCC-----------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH-----------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHH
Confidence            3444555555555555555555522           222344555555555555555555555555555431  333444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      +..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...+...
T Consensus        79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (186)
T 3as5_A           79 ATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM  157 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence            5555555555555555555555554443 334444455555555555555555555555444444444455555555555


Q ss_pred             CChhHHHHHHHHHHH
Q 037499          170 RRLEDAWKVFDEMLK  184 (262)
Q Consensus       170 g~~~~a~~~~~~m~~  184 (262)
                      |++++|...+++..+
T Consensus       158 ~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          158 GRHEEALPHFKKANE  172 (186)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=1.1e-14  Score=112.43  Aligned_cols=205  Identities=12%  Similarity=0.076  Sum_probs=169.5

Q ss_pred             CCCCCCCHHHHHHHHh-------hcCCh-------HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCh
Q 037499            2 NKAKPTSPFRLASLLR-------LQKDP-------KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF   67 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   67 (262)
                      +|.++..|..++..+.       +.|++       ++|..+|++....          -.+.+...|..++..+.+.|++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----------~~p~~~~~~~~~~~~~~~~~~~  115 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------LLKKNMLLYFAYADYEESRMKY  115 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----------TTTTCHHHHHHHHHHHHHTTCH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH----------hCcccHHHHHHHHHHHHhcCCH
Confidence            3566667888887776       35886       9999999998442          1234677999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCcc-HH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-hcCCHHHHHHH
Q 037499           68 DEVQQILHQLKHDTRVVPE-EI-IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDL  144 (262)
Q Consensus        68 ~~a~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~  144 (262)
                      ++|.++|+++.+.   .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+.++|..+
T Consensus       116 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~  191 (308)
T 2ond_A          116 EKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             HHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999974   343 43 79999999999999999999999999875 455566655444432 37999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      |+...+..+.+...|..++..+.+.|++++|..+|++..... ..|  +...|..++....+.|+.+.|..+++++.+.
T Consensus       192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999998888889999999999999999999999999999963 344  4568888899999999999999999999876

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.69  E-value=2.5e-13  Score=102.70  Aligned_cols=192  Identities=11%  Similarity=-0.012  Sum_probs=170.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSF  125 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  125 (262)
                      ++.++..+...+...|++++|+..|++..+.    .+...+..+...|..    .+++++|++.|++..+.+   +..++
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            6788899999999999999999999999873    345678889999999    999999999999999875   67788


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHH
Q 037499          126 NTLLNAMLT----CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTL  197 (262)
Q Consensus       126 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  197 (262)
                      ..+...|..    .+++++|+..|++..+.+  +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            899999999    999999999999998764  78889999999999    999999999999999976   56677778


Q ss_pred             HHHHHh----hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 037499          198 IYGLCL----ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNK  257 (262)
Q Consensus       198 i~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g  257 (262)
                      ...|..    .+++++|...|++..+.    .+...+..+...|..    .+++++|.+.+++..+.+
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            888888    89999999999999874    356788888999999    999999999999988764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.68  E-value=3.7e-17  Score=129.01  Aligned_cols=188  Identities=11%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499           15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI   94 (262)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   94 (262)
                      .+.+.|++++|.+.++++ .               ++.+|..++.++.+.|++++|++.|.+.       +|..+|..++
T Consensus        12 ll~~~~~ld~A~~fae~~-~---------------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~   68 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERC-N---------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVV   68 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhC-C---------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHH
Confidence            345778899999999998 1               2359999999999999999999999642       5677899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED  174 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  174 (262)
                      .++...|++++|+++++..++.  .+++.+.+.++.+|.+.|+++++.++++      .|+..+|..++..|...|.+++
T Consensus        69 ~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yee  140 (449)
T 1b89_A           69 QAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDA  140 (449)
T ss_dssp             ------------------------------------------CHHHHTTTTT------CC----------------CTTT
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999988877764  4567889999999999999999998884      2677799999999999999999


Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 037499          175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF  249 (262)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  249 (262)
                      |..+|..+         ..|..++.++.+.|++++|++.+.++       .++.+|..++.+|+..|+++.|...
T Consensus       141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~  199 (449)
T 1b89_A          141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMC  199 (449)
T ss_dssp             HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHH
Confidence            99999976         48999999999999999999999988       2789999999999999999999643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.68  E-value=6.2e-16  Score=126.25  Aligned_cols=199  Identities=10%  Similarity=-0.049  Sum_probs=174.5

Q ss_pred             CCCCCCHHHHHHHHhhcCCh-HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            3 KAKPTSPFRLASLLRLQKDP-KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      |.+...+..++..+...|++ ++|++.|+....           ..+.+...|..+..+|.+.|++++|++.|++..+. 
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-----------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-  166 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK-----------LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-  166 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence            34556678899999999999 999999999843           33457889999999999999999999999999974 


Q ss_pred             CCCccHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc--------CCHHHHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRA---------RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC--------GKIDRMTDL  144 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~  144 (262)
                        .|+...+..+..++...         |++++|++.|++..+.. +.+...|..+..+|...        |++++|+..
T Consensus       167 --~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~  243 (474)
T 4abn_A          167 --CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA  243 (474)
T ss_dssp             --CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence              47788999999999999         99999999999999876 66788999999999998        999999999


Q ss_pred             HHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          145 FQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       145 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      |++.....+   .+...|..+..+|...|++++|...|++..+... .+...+..+..++...|++++|++.+.++
T Consensus       244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999998777   7899999999999999999999999999998742 35667888888999999999998765443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.67  E-value=3.8e-14  Score=100.41  Aligned_cols=165  Identities=13%  Similarity=0.017  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...|..+...+...|++++|+..++++.+.  .+.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            345555666666666666666666666543  23455566666666666666666666666666553 445556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  210 (262)
                      .+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666666666555555666666666666666666666666665542 22345555566666666666666


Q ss_pred             HHHHHHHHH
Q 037499          211 LKLKEDMMR  219 (262)
Q Consensus       211 ~~~~~~~~~  219 (262)
                      ...++++.+
T Consensus       164 ~~~~~~~~~  172 (186)
T 3as5_A          164 LPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.65  E-value=1.9e-14  Score=114.25  Aligned_cols=236  Identities=9%  Similarity=-0.040  Sum_probs=179.0

Q ss_pred             HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----Cc
Q 037499           12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY-NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-----VP   85 (262)
Q Consensus        12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~   85 (262)
                      .+..+...|++++|+..|+.......      ..+..+ ...+|..+...+...|+++.|+..+++..+...-     +.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLI------FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGG------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHh------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            66778899999999999998755310      001111 4578999999999999999999999988763211     12


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CC
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-----YV-SP  154 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~  154 (262)
                      ...++..+..+|...|++++|++.|++..+.    +..+ ...++..+..+|...|++++|++.+++...     .. +.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            2457888999999999999999999988753    1111 124788899999999999999999998877     34 34


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCchHHHHHHHHHHHhhCC---HHHHHHHHHHHHHhcCCCCCH
Q 037499          155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTLVTFGTLIYGLCLELR---VDEALKLKEDMMRVYNVKPDA  227 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~  227 (262)
                      ...++..+...|.+.|++++|...+++..+.    +-+.....+..+...+...|+   +++|+.++++..   ..+...
T Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~  339 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLE  339 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHH
Confidence            4678899999999999999999999998764    111223345667778888888   777777776652   212234


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          228 QVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ..+..+...|...|++++|.+.+++..+.
T Consensus       340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          340 DFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            56778899999999999999999998653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=5.3e-15  Score=118.37  Aligned_cols=236  Identities=12%  Similarity=0.016  Sum_probs=177.8

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL----LHYDLIITKLGRAKMFDEVQQILHQLKHDT---   81 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---   81 (262)
                      +..++..+...|++++|+..|+.+...           .+.+.    .+|..+...+...|++++|+..+++..+..   
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQA-----------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHh-----------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            345777889999999999999998543           12233    578899999999999999999999886531   


Q ss_pred             C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C-CCCChhhHHHHHHHHHhcCC-----------------H
Q 037499           82 R-VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF----N-VQRTVKSFNTLLNAMLTCGK-----------------I  138 (262)
Q Consensus        82 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~-----------------~  138 (262)
                      + .+....++..+...|...|++++|.+.|++..+.    + .+....++..+...|...|+                 +
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~  199 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL  199 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence            1 1334567888999999999999999999987654    1 12234578888889999999                 9


Q ss_pred             HHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-Cc----hHHHHHHHHHHHhhCCH
Q 037499          139 DRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PT----LVTFGTLIYGLCLELRV  207 (262)
Q Consensus       139 ~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~  207 (262)
                      ++|++.+++......      ....++..+...|...|++++|...+++..+.... ++    ..++..+...|...|++
T Consensus       200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  279 (411)
T 4a1s_A          200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF  279 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence            999999887654321      23457788889999999999999999888764111 11    23677788889999999


Q ss_pred             HHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          208 DEALKLKEDMMRVYNVKP----DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       208 ~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++|...+++..+...-..    ...++..+...|...|++++|.+.+++..+
T Consensus       280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999988765421111    145677888888999999999998888764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=2.5e-15  Score=120.24  Aligned_cols=244  Identities=15%  Similarity=0.079  Sum_probs=187.1

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---C-C
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---R-V   83 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~   83 (262)
                      .+..++..+...|++++|+..|+.......     .....+....++..+...+...|++++|+..+++..+..   + .
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  162 (411)
T 4a1s_A           88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAK-----SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR  162 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch
Confidence            577889999999999999999987643200     001123456788999999999999999999999887631   1 1


Q ss_pred             CccHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 037499           84 VPEEIIFCNVISFYGRARL-----------------LEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKIDRM  141 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a  141 (262)
                      +....++..+...|...|+                 +++|++.+++..+.    +..+ ...++..+...|...|++++|
T Consensus       163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  242 (411)
T 4a1s_A          163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA  242 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            2335578889999999999                 99999999887542    2112 235788889999999999999


Q ss_pred             HHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CchHHHHHHHHHHHhhCCHHHH
Q 037499          142 TDLFQIMEKYVS--PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-----PTLVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       142 ~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~a  210 (262)
                      +..+++.....+  .+    ..++..+...|...|++++|...+++.......     ....++..+...+...|++++|
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (411)
T 4a1s_A          243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA  322 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999998876543  22    337889999999999999999999988764110     1246778888999999999999


Q ss_pred             HHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          211 LKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       211 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ...+++..+...-..+    ..++..+..+|...|++++|.+.+++..+.
T Consensus       323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            9999988654211112    457888899999999999999999998753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=3.9e-14  Score=120.43  Aligned_cols=167  Identities=10%  Similarity=0.013  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      .+..+|+.+...+.+.|++++|++.|++..+..  +-+..++..+..+|.+.|++++|++.|++..+.. +-+..+|..+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL   83 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            356677777777777777777777777777642  4456677777777777777777777777777664 4456677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD  208 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  208 (262)
                      ..+|.+.|++++|++.|++..+..+.+...|+.+..+|.+.|++++|+..|++..+... -+...+..+..++...|+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHH
Confidence            77777777777777777777776666677777777777777777777777777776532 24556677777777777777


Q ss_pred             HHHHHHHHHHH
Q 037499          209 EALKLKEDMMR  219 (262)
Q Consensus       209 ~a~~~~~~~~~  219 (262)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=2.4e-14  Score=121.75  Aligned_cols=167  Identities=11%  Similarity=0.071  Sum_probs=151.8

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      |-+..+++.|..+|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+..+.+...|..+.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4457889999999999999999999999999875 566889999999999999999999999999998888899999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGE  242 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  242 (262)
                      .+|...|++++|.+.|++..+... -+...|..+..+|.+.|++++|++.|++..+.   .| +...|..+..+|...|+
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence            999999999999999999998642 35778999999999999999999999999875   44 57789999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 037499          243 LSLALGFKEEMVR  255 (262)
Q Consensus       243 ~~~a~~~~~~m~~  255 (262)
                      +++|.+.+++..+
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.64  E-value=3.9e-15  Score=118.65  Aligned_cols=243  Identities=16%  Similarity=0.088  Sum_probs=172.5

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----C
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR----V   83 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~   83 (262)
                      .+..++..+...|++++|...|+.......     .....+....++..+...+...|++++|+..+++..+...    .
T Consensus        49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  123 (406)
T 3sf4_A           49 IYSQLGNAYFYLHDYAKALEYHHHDLTLAR-----TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK  123 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence            466788888889999999988876532100     0001122356788888888889999999998887765310    0


Q ss_pred             CccHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCH
Q 037499           84 VPEEIIFCNVISFYGRARL--------------------LEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKI  138 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~  138 (262)
                      .....++..+...|...|+                    +++|.+.+++..+.    +..+ ...++..+...|...|++
T Consensus       124 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  203 (406)
T 3sf4_A          124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF  203 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH
T ss_pred             cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH
Confidence            1114477788888888888                    88888888876542    1111 234677888888899999


Q ss_pred             HHHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-chHHHHHHHHHHHhhCCH
Q 037499          139 DRMTDLFQIMEKYVS--PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQP-TLVTFGTLIYGLCLELRV  207 (262)
Q Consensus       139 ~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~  207 (262)
                      ++|...+++.....+  ++    ..++..+...|...|++++|...+++....    +..+ ...++..+...|...|++
T Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  283 (406)
T 3sf4_A          204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY  283 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence            999999988765433  22    337888888999999999999999887753    1111 145677788888899999


Q ss_pred             HHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          208 DEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       208 ~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++|...+++..+...-..+    ..++..+..+|...|++++|.+.+++..+
T Consensus       284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999887654221222    55777888889999999999999888654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.64  E-value=1.1e-14  Score=112.87  Aligned_cols=237  Identities=11%  Similarity=0.027  Sum_probs=173.6

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN----LLHYDLIITKLGRAKMFDEVQQILHQLKHDT--   81 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--   81 (262)
                      .+...+..+...|++++|+..|+.+...           .+.+    ...|..+...+...|++++|++.+++..+..  
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   75 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART   75 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhh-----------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence            3556788899999999999999998543           1123    4678899999999999999999998875421  


Q ss_pred             -C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHHhcCC-----------------
Q 037499           82 -R-VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRT----VKSFNTLLNAMLTCGK-----------------  137 (262)
Q Consensus        82 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~-----------------  137 (262)
                       + .+....++..+...+...|++++|.+.+++..+..- .++    ..++..+...+...|+                 
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence             1 122356788889999999999999999988764310 111    3477888888889999                 


Q ss_pred             ---HHHHHHHHHHHHhcC----C--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCchHHHHHHHHHHHh
Q 037499          138 ---IDRMTDLFQIMEKYV----S--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-----QPTLVTFGTLIYGLCL  203 (262)
Q Consensus       138 ---~~~a~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~  203 (262)
                         +++|.+.+++.....    .  ....++..+...+...|++++|...+++..+...     .....++..+...+..
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence               899998887765431    1  2345678888888999999999999988765311     1112367777888888


Q ss_pred             hCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          204 ELRVDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       204 ~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      .|++++|...+++..+...-..+    ..++..+...|...|++++|...+++..+
T Consensus       236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            89999999888887653211122    45677778888888888888888887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=4.6e-15  Score=114.96  Aligned_cols=245  Identities=14%  Similarity=0.079  Sum_probs=184.4

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE   86 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   86 (262)
                      ..+..++..+...|++++|.+.++.......     .....+....++..+...+...|++++|+..+++..+...-.++
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  118 (338)
T 3ro2_A           44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-----TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND  118 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence            3467888999999999999999987633200     00011224668888999999999999999999987653111112


Q ss_pred             ----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCC
Q 037499           87 ----EIIFCNVISFYGRARL--------------------LEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGK  137 (262)
Q Consensus        87 ----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~  137 (262)
                          ..++..+...+...|+                    +++|.+.+++..+.    +..+ ...++..+...+...|+
T Consensus       119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  198 (338)
T 3ro2_A          119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN  198 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence                4478888999999999                    99999999876542    2111 23578888899999999


Q ss_pred             HHHHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CC-chHHHHHHHHHHHhhCC
Q 037499          138 IDRMTDLFQIMEKYVS--P----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL----QP-TLVTFGTLIYGLCLELR  206 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~-~~~~~~~li~~~~~~g~  206 (262)
                      +++|...+++.....+  +    ...++..+...+...|++++|...+++......    .+ ...++..+...+...|+
T Consensus       199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (338)
T 3ro2_A          199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD  278 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence            9999999998765432  2    234788899999999999999999998875311    11 14577788889999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          207 VDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       207 ~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      +++|...+++..+...-..+    ..++..+...|.+.|++++|.+.+++..+.
T Consensus       279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999987654211122    447788899999999999999999998874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=8.7e-15  Score=116.64  Aligned_cols=238  Identities=11%  Similarity=0.012  Sum_probs=182.6

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN--LLHYDLIITKLGRAKMFDEVQQILHQLKHD---TRV   83 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~   83 (262)
                      +...+..+...|++++|+..|+.+....         +..+.  ..+|..+...+...|++++|+..+++..+.   .+-
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   82 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVG---------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD   82 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence            4577889999999999999999985431         11111  467889999999999999999999987542   111


Q ss_pred             C-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC----CCC-ChhhHHHHHHHHHhcCC--------------------
Q 037499           84 V-PEEIIFCNVISFYGRARLLEHALQVFDEMSSFN----VQR-TVKSFNTLLNAMLTCGK--------------------  137 (262)
Q Consensus        84 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~g~--------------------  137 (262)
                      . ....++..+...+...|++++|...+++..+..    .++ ...++..+...|...|+                    
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~  162 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA  162 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence            2 235578889999999999999999999876531    111 13478888999999999                    


Q ss_pred             HHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCc----hHHHHHHHHHHHhhCC
Q 037499          138 IDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPT----LVTFGTLIYGLCLELR  206 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~  206 (262)
                      +++|++.+++......      ....++..+...|...|++++|...+++..+... .++    ..++..+...+...|+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            9999999987754321      2345788899999999999999999999876411 111    2378888899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          207 VDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       207 ~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +++|...+++..+...-.++    ..++..+...|...|++++|.+.+++..+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99999999988654211122    55788889999999999999999998765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.62  E-value=5.4e-13  Score=98.13  Aligned_cols=194  Identities=11%  Similarity=-0.043  Sum_probs=149.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      .|+..|......+...|++++|+..|++..+.. -+++...+..+..++...|++++|++.|++..+.. +.+..+|..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            366889999999999999999999999999863 22677888889999999999999999999999875 5567889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc---hHHHHHHH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDA-------CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT---LVTFGTLI  198 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li  198 (262)
                      ..+|...|++++|+..|++..+..+.+.       ..|..+...+...|++++|...|++..+.  .|+   ...+..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            9999999999999999999998877666       56888899999999999999999999886  444   56777777


Q ss_pred             HHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       199 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      .+|...|+.     +++++...  ...+...|....  ....+.+++|...+++..+
T Consensus       161 ~~~~~~~~~-----~~~~a~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          161 VLFYNNGAD-----VLRKATPL--ASSNKEKYASEK--AKADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HHHHHHHHH-----HHHHHGGG--TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHhc--ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence            777766554     23333221  112233333332  2233445666666666655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.62  E-value=9.3e-14  Score=110.17  Aligned_cols=237  Identities=12%  Similarity=-0.021  Sum_probs=178.3

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CC-
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR----VV-   84 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-   84 (262)
                      ...+..+...|++++|+..|+.......     ..........++..+...+...|+++.|+..+++..+...    .. 
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  179 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELP-----FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI  179 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGG-----GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence            3456667889999999999998754311     0011122456888999999999999999999998875311    11 


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-----YVSP  154 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~  154 (262)
                      ....+++.+..+|...|++++|++.|++..+.    +.++ ...++..+..+|...|++++|++.|++...     ..+.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            12557888999999999999999999987653    2111 235788899999999999999999999877     5554


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCchHHHHHHHHHHHhhCC---HHHHHHHHHHHHHhcCCCC-C
Q 037499          155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQPTLVTFGTLIYGLCLELR---VDEALKLKEDMMRVYNVKP-D  226 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~p-~  226 (262)
                      ...++..+...|.+.|++++|...+++..+..    -+.....+..+...+...++   +.+|+..+++.    +..| .
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~  335 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYI  335 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHH
Confidence            47888999999999999999999999988742    12223455666666777788   77777777653    2223 3


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          227 AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       227 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ...+..+...|...|++++|...+++..+
T Consensus       336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          336 EACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34677888999999999999999998765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.60  E-value=3.3e-14  Score=107.59  Aligned_cols=233  Identities=13%  Similarity=0.049  Sum_probs=158.1

Q ss_pred             hhcCChHHHHHhhcCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCccHHH
Q 037499           17 RLQKDPKLALQLFKNPNPNPNNTEAQPLK-PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD------TRVVPEEII   89 (262)
Q Consensus        17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~   89 (262)
                      ...|++++|+..|++.......    ... ..+....++..+...+...|++++|+..+++..+.      ...+....+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEK----TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT   87 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHH----HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence            3456666666666655331000    000 22346778999999999999999999999988764      112344668


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhc------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSF------N-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--------VSP  154 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~  154 (262)
                      +..+..+|...|++++|++.|++..+.      . .+....++..+...|...|++++|...+++....        .+.
T Consensus        88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  167 (283)
T 3edt_B           88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN  167 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            889999999999999999999988764      1 1334577888999999999999999999988765        224


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCch-HHHHHHHHHHHhhCC------HHHHHHHHHHHHHh
Q 037499          155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-------RLQPTL-VTFGTLIYGLCLELR------VDEALKLKEDMMRV  220 (262)
Q Consensus       155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~-~~~~~li~~~~~~g~------~~~a~~~~~~~~~~  220 (262)
                      ...++..+...|...|++++|...+++..+.       ...+.. ..+..+...+...+.      +..+...++...  
T Consensus       168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  245 (283)
T 3edt_B          168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK--  245 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--
Confidence            4678889999999999999999999998763       112222 233333333332222      222222222221  


Q ss_pred             cCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          221 YNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       221 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                       ...| ...++..+..+|...|++++|..++++..+.
T Consensus       246 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          246 -VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             -CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             1122 3557888999999999999999999998753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.60  E-value=4e-13  Score=98.83  Aligned_cols=155  Identities=12%  Similarity=-0.056  Sum_probs=132.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      .++..+......+...|++++|++.|++..+..-+++...+..+..++...|++++|++.|++.....+.+...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            45678889999999999999999999999987632778888889999999999999999999999988888899999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCch-------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQPTL-------VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD---AQVFASLI  234 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~  234 (262)
                      .|...|++++|...+++..+... .+.       ..|..+...+...|++++|+..|++..+   ..|+   ...|..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence            99999999999999999998632 234       4577778888999999999999999985   4665   56777888


Q ss_pred             HHHHhcCCh
Q 037499          235 KGLCAVGEL  243 (262)
Q Consensus       235 ~~~~~~g~~  243 (262)
                      .+|...|+.
T Consensus       161 ~~~~~~~~~  169 (228)
T 4i17_A          161 VLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.59  E-value=5.8e-13  Score=110.29  Aligned_cols=218  Identities=11%  Similarity=0.076  Sum_probs=175.6

Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCCCccHH
Q 037499           23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR-------AKMFD-------EVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus        23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~   88 (262)
                      ++|..+|++..           ...+.+...|..++..+.+       .|+++       +|..+|++..+. -.+.+..
T Consensus       255 ~~a~~~y~~al-----------~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~  322 (530)
T 2ooe_A          255 KRVMFAYEQCL-----------LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNML  322 (530)
T ss_dssp             HHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHH
T ss_pred             HHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHH
Confidence            36777888773           3445588899999988886       69987       899999999862 1345688


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT-V-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG-  165 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-  165 (262)
                      .|..++..+.+.|++++|.++|+++.+.  +|+ . .+|..++..+.+.|++++|.++|++..+..+.+...|...+.. 
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            9999999999999999999999999985  443 3 5899999999999999999999999988766444444433322 


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCh
Q 037499          166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGEL  243 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~  243 (262)
                      +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++........|+  ...|...+......|+.
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~  479 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  479 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred             HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            346899999999999998863 336788999999999999999999999999875333443  55788888888899999


Q ss_pred             hHHHHHHHHHHH
Q 037499          244 SLALGFKEEMVR  255 (262)
Q Consensus       244 ~~a~~~~~~m~~  255 (262)
                      +.+..++.++.+
T Consensus       480 ~~~~~~~~r~~~  491 (530)
T 2ooe_A          480 ASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.58  E-value=4.4e-12  Score=103.99  Aligned_cols=223  Identities=9%  Similarity=-0.056  Sum_probs=135.8

Q ss_pred             CCCCHHHHHHHHhh----cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 037499            5 KPTSPFRLASLLRL----QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR----AKMFDEVQQILHQ   76 (262)
Q Consensus         5 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~   76 (262)
                      ++.++..+...|..    .+++++|+..|+...+.             -+...+..+...|..    .+++++|++.|++
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  104 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK  104 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            34445566666666    67777777777776332             256667777777777    7777777777777


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 037499           77 LKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIM  148 (262)
Q Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~  148 (262)
                      ..+. +   +...+..|...|..    .+++++|+++|++..+.|   +...+..+...|..    .+++++|++.|++.
T Consensus       105 a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a  177 (490)
T 2xm6_A          105 AALK-G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA  177 (490)
T ss_dssp             HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            7664 2   44556666666666    667777777777776654   34556666666665    56677777777766


Q ss_pred             HhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 037499          149 EKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRV  220 (262)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~  220 (262)
                      .+.  .+...+..+...|..    .+++++|...|++..+.|   +...+..+...|..    .+++++|..+|++..+.
T Consensus       178 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  252 (490)
T 2xm6_A          178 AEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ  252 (490)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred             HHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            554  345566666666665    666666766666666553   34445555555554    55666666666655432


Q ss_pred             cCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 037499          221 YNVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRN  256 (262)
Q Consensus       221 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~  256 (262)
                          .+...+..+...|..    .++.++|.++|++..+.
T Consensus       253 ----~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~  288 (490)
T 2xm6_A          253 ----GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ  288 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred             ----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence                233344444444544    55555555555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.57  E-value=2.6e-13  Score=102.59  Aligned_cols=159  Identities=13%  Similarity=0.050  Sum_probs=124.7

Q ss_pred             HhcCChhHHHHHHHHHHhcC------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC-CCChhhHHHH
Q 037499           62 GRAKMFDEVQQILHQLKHDT------RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF------NV-QRTVKSFNTL  128 (262)
Q Consensus        62 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l  128 (262)
                      ...|+++.|+..+++..+..      ..+....++..+..+|...|++++|++.|++..+.      +. +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34567777777766665521      12345678899999999999999999999988754      21 2345678999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-chHH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYV--------SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR------RLQP-TLVT  193 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~  193 (262)
                      ..+|...|++++|+..|++.....        +....++..+...|...|++++|...+++..+.      +..| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999887652        244678889999999999999999999998875      1122 3567


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      +..+...|...|++++|..++++..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888899999999999999999998763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.57  E-value=8.1e-12  Score=102.42  Aligned_cols=224  Identities=10%  Similarity=-0.071  Sum_probs=156.9

Q ss_pred             CCCCHHHHHHHHhh----cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 037499            5 KPTSPFRLASLLRL----QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR----AKMFDEVQQILHQ   76 (262)
Q Consensus         5 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~   76 (262)
                      ++..+..|+..|..    .+++++|++.|+.....             .+...+..+...|..    .+++++|++.|++
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  140 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL  140 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            34456777888887    88888888888887332             266777778888877    7788888888888


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 037499           77 LKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIM  148 (262)
Q Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~  148 (262)
                      ..+. +   +...+..+...|..    .+++++|+++|++..+.|   +...+..+...|..    .++.++|++.|++.
T Consensus       141 a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a  213 (490)
T 2xm6_A          141 AAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS  213 (490)
T ss_dssp             HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence            8764 2   45667777777776    678888888888887754   45667777777776    77888888888877


Q ss_pred             HhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 037499          149 EKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRV  220 (262)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~  220 (262)
                      .+.  .+...+..+...|..    .+++++|...|++..+.|   +...+..+...|..    .++.++|+.+|++..+.
T Consensus       214 ~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~  288 (490)
T 2xm6_A          214 ATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ  288 (490)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence            665  345566666666665    677777777777777654   34455555556665    67777777777776543


Q ss_pred             cCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcC
Q 037499          221 YNVKPDAQVFASLIKGLCAV-----GELSLALGFKEEMVRNK  257 (262)
Q Consensus       221 ~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g  257 (262)
                          -+...+..+...|...     ++.++|..++++..+.|
T Consensus       289 ----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~  326 (490)
T 2xm6_A          289 ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG  326 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred             ----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence                2444555666666665     67777777777666544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.56  E-value=1.3e-13  Score=112.33  Aligned_cols=190  Identities=11%  Similarity=0.021  Sum_probs=111.9

Q ss_pred             CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc---------
Q 037499           65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC---------  135 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------  135 (262)
                      +++++|.+.+++.....  +.+..++..+...|...|++++|++.|++..+.. +.+..++..+..+|...         
T Consensus       227 ~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~  303 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE  303 (472)
T ss_dssp             ---CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             hHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence            45566666666666532  4455666667777777777777777777776654 44455555555554321         


Q ss_pred             ----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchH--HHHHHHH-HHH
Q 037499          136 ----------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV--TFGTLIY-GLC  202 (262)
Q Consensus       136 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~-~~~  202 (262)
                                +..++|...++......+.+..++..+...|...|++++|...|++..+....+...  .+..+.. ...
T Consensus       304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~  383 (472)
T 4g1t_A          304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY  383 (472)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence                      234566666666666666666777788888888899999999998888764433221  2222222 234


Q ss_pred             hhCCHHHHHHHHHHHHHhc----------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          203 LELRVDEALKLKEDMMRVY----------------------NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       203 ~~g~~~~a~~~~~~~~~~~----------------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      ..|+.++|+..|++..+..                      ..+.+..+|..+..+|...|++++|++.|++.++.|
T Consensus       384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          384 QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             TSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            6788888888887765421                      012345678888888888999999999998887753

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.56  E-value=1.7e-12  Score=97.59  Aligned_cols=197  Identities=8%  Similarity=-0.041  Sum_probs=150.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCC
Q 037499           47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFNV--QRT  121 (262)
Q Consensus        47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~  121 (262)
                      .+.+...+..+...+.+.|++++|+..|+++.+..  +.+   ...+..+..+|.+.|++++|+..|++..+..-  +..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            34577888899999999999999999999999853  333   67888999999999999999999999988631  122


Q ss_pred             hhhHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHhcCChhHHH
Q 037499          122 VKSFNTLLNAMLT--------CGKIDRMTDLFQIMEKYVSPDACSY-----------------NILMHGCVVSRRLEDAW  176 (262)
Q Consensus       122 ~~~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~  176 (262)
                      ..++..+..++..        .|++++|+..|+++....+.+....                 ..+...|.+.|++++|.
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            4567778888888        9999999999999998777555555                 55688899999999999


Q ss_pred             HHHHHHHHCCCCC--chHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCh
Q 037499          177 KVFDEMLKRRLQP--TLVTFGTLIYGLCLE----------LRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGEL  243 (262)
Q Consensus       177 ~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  243 (262)
                      ..|+++.+.....  ....+..+..+|...          |++++|...|+++.+.+.-.|. ......+-..+...+++
T Consensus       169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~  248 (261)
T 3qky_A          169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL  248 (261)
T ss_dssp             HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence            9999998863221  345677777788766          8999999999999876322221 12344444444444444


Q ss_pred             hH
Q 037499          244 SL  245 (262)
Q Consensus       244 ~~  245 (262)
                      ++
T Consensus       249 ~~  250 (261)
T 3qky_A          249 EG  250 (261)
T ss_dssp             HT
T ss_pred             hh
Confidence            33

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.53  E-value=6.2e-13  Score=99.94  Aligned_cols=173  Identities=9%  Similarity=-0.037  Sum_probs=140.4

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN---LLHYDLIITKLGRAKMFDEVQQILHQLK   78 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~   78 (262)
                      +|.++..+..++..+.+.|++++|+..|+.+...           .+.+   ...+..+..++.+.|++++|+..|++..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   79 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI   79 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3455666788899999999999999999998543           2223   7789999999999999999999999999


Q ss_pred             hcCC-CCccHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhcCCCCChhhH-----------------HHHHHHH
Q 037499           79 HDTR-VVPEEIIFCNVISFYGR--------ARLLEHALQVFDEMSSFNVQRTVKSF-----------------NTLLNAM  132 (262)
Q Consensus        79 ~~~~-~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~  132 (262)
                      +... -+.....+..+..++..        .|++++|+..|+++.+.. +.+....                 ..+..+|
T Consensus        80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~  158 (261)
T 3qky_A           80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLY  158 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8531 12335678888889988        999999999999998764 3344444                 5567889


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhc----------CChhHHHHHHHHHHHCC
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSP---DACSYNILMHGCVVS----------RRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~  186 (262)
                      .+.|++++|+..|+++.+..+.   ....+..+..+|...          |++++|...|+++.+..
T Consensus       159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            9999999999999999887663   356788888888876          88999999999999863

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.53  E-value=3.5e-12  Score=92.54  Aligned_cols=177  Identities=7%  Similarity=0.013  Sum_probs=137.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHH----------------HHHHHHhcCCHHHHHHHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN----------------VISFYGRARLLEHALQVFDEM  113 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~  113 (262)
                      ++..+......+.+.|++++|+..|++..+..  +.+...+..                +..+|.+.|++++|+..|++.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34555667778889999999999999998853  334566777                899999999999999999999


Q ss_pred             hhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCch
Q 037499          114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR--LEDAWKVFDEMLKRRLQPTL  191 (262)
Q Consensus       114 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~  191 (262)
                      .+.. |.+...+..+..++...|++++|+..|++..+..+.+..+|..+...|...|+  .+.+...++....  ..|..
T Consensus        81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  157 (208)
T 3urz_A           81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ  157 (208)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred             HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence            9876 66788999999999999999999999999999988889999999988876654  3445555555542  23333


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499          192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI  234 (262)
Q Consensus       192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  234 (262)
                      ..+.....++...|++++|+..|++..   ...|+......+.
T Consensus       158 ~a~~~~g~~~~~~~~~~~A~~~~~~al---~l~P~~~~~~~l~  197 (208)
T 3urz_A          158 YARYRDGLSKLFTTRYEKARNSLQKVI---LRFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHT---TTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCHHHHHHHH
Confidence            344445556777899999999999998   4578866554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.52  E-value=3.5e-12  Score=105.62  Aligned_cols=204  Identities=11%  Similarity=0.080  Sum_probs=165.5

Q ss_pred             CCCCCCHHHHHHHHhh-------cCChH-------HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChh
Q 037499            3 KAKPTSPFRLASLLRL-------QKDPK-------LALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD   68 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   68 (262)
                      |.++..|..++..+.+       .|+++       +|..+|++....          ..+.+...|..++..+.+.|+++
T Consensus       269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~----------~~p~~~~l~~~~~~~~~~~g~~~  338 (530)
T 2ooe_A          269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------LLKKNMLLYFAYADYEESRMKYE  338 (530)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT----------TCSSCHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH----------hCcccHHHHHHHHHHHHhcCCHH
Confidence            4566677788888776       79987       999999998431          23447889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcc-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHhcCCHHHHHHHH
Q 037499           69 EVQQILHQLKHDTRVVPE-E-IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-MLTCGKIDRMTDLF  145 (262)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~  145 (262)
                      +|..+|+++.+.   .|+ . .+|...+..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|..+|
T Consensus       339 ~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          339 KVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             HHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999984   343 3 589999999999999999999999998763 3333444333322 34689999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      +...+..+.+...|..++..+.+.|+.++|..+|++....+. .|+  ...|...+......|+.+.+.+++.++.+.
T Consensus       415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999888777899999999999999999999999999998742 232  447888888888899999999999998765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.52  E-value=3.8e-12  Score=85.05  Aligned_cols=129  Identities=12%  Similarity=0.153  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  132 (262)
                      .|..+...+...|++++|+.+++++.+..  +.+...+..+...+...|++++|.++|+++.+.+ +.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence            34555556666666666666666655532  3344555555555666666666666666655543 33444555555555


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      ...|++++|...++++....+.+..++..+...+.+.|++++|...++++..
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            5666666666666555554444455555555555555555555555555544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.52  E-value=6.7e-13  Score=112.96  Aligned_cols=182  Identities=10%  Similarity=-0.069  Sum_probs=148.9

Q ss_pred             hhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 037499           17 RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF   96 (262)
Q Consensus        17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (262)
                      ...|++++|++.|+......-   .......+.+...|..+...+.+.|++++|++.|+++.+..  +.+...+..+..+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~---~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~  476 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGAL---DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA  476 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcc---cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence            789999999999998741000   00002334577889999999999999999999999999853  5678899999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH
Q 037499           97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW  176 (262)
Q Consensus        97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  176 (262)
                      +...|++++|++.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+..+.+...|..+..++.+.|++++|.
T Consensus       477 ~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          477 ELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999876 5677889999999999999999 99999999988888999999999999999999999


Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499          177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELR  206 (262)
Q Consensus       177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  206 (262)
                      ..|++..+.+. -+...+..+..++...++
T Consensus       555 ~~~~~al~l~P-~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          555 RTLDEVPPTSR-HFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred             HHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence            99999887532 235667777777666444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.51  E-value=1.3e-12  Score=106.36  Aligned_cols=173  Identities=5%  Similarity=-0.182  Sum_probs=112.3

Q ss_pred             CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCC
Q 037499            6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP-FRYNLLHYDLIITKLGRA--KMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~   82 (262)
                      ..++..++.+|...|++++|...++........   . ... ......++..+..++...  +++++|+..|++..+.. 
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~---~-~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-  168 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK---F-SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-  168 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---S-CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh---c-ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-
Confidence            345778999999999999999988765321000   0 001 122456677666666654  56899999999998753 


Q ss_pred             CCccHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 037499           83 VVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIMEKYVSPD  155 (262)
Q Consensus        83 ~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~  155 (262)
                       |-++..+..+..+   +...++.++|++.+++..+.. +.+..++..+...+..    .|++++|.+++++.....+.+
T Consensus       169 -p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~  246 (472)
T 4g1t_A          169 -PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV  246 (472)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC
T ss_pred             -CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH
Confidence             3445555554444   344566777788887777654 4455555555544443    356677777777777766677


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       156 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      ..++..+...|...|++++|...+++..+.
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            777777777777888887777777777664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.50  E-value=1.3e-11  Score=109.03  Aligned_cols=205  Identities=11%  Similarity=0.047  Sum_probs=144.8

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      .++.+|..++.++...|++++|++.|.+.                .|...|..++.++.+.|++++|++.+....+..  
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-- 1164 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-- 1164 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--
Confidence            34667888888888888888888888665                167778888888888888888888888776642  


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                       ++....+.++.+|++.++++....+    .+   .++...|..+...|...|++++|..+|...        ..|..+.
T Consensus      1165 -~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A         1165 -RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred             -ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHH
Confidence             3333344578888888887753333    22   455666777888888888888888888885        3688888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL  243 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  243 (262)
                      ..+.+.|++++|.+.+++..      +..+|..+-.+|...|++..|......+      ..+...+..++..|.+.|.+
T Consensus      1229 ~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A         1229 STLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred             HHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCH
Confidence            88888888888888887652      4456666666666666666665544332      23445556677777777777


Q ss_pred             hHHHHHHHHHH
Q 037499          244 SLALGFKEEMV  254 (262)
Q Consensus       244 ~~a~~~~~~m~  254 (262)
                      ++|+.+++..+
T Consensus      1297 eEAI~LlE~aL 1307 (1630)
T 1xi4_A         1297 EELITMLEAAL 1307 (1630)
T ss_pred             HHHHHHHHHHh
Confidence            77777775553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.49  E-value=8.2e-12  Score=83.35  Aligned_cols=127  Identities=14%  Similarity=0.185  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      +..+...+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|..+++++....+.+...+..+...+...
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            4445555555566666666666555443 334445555555555555555555555555554444445555555555555


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM  218 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  218 (262)
                      |++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.
T Consensus        83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            55555555555555432 1233444444455555555555555555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.49  E-value=4.5e-12  Score=96.93  Aligned_cols=198  Identities=9%  Similarity=0.021  Sum_probs=146.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-Chhh
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDT---RVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKS  124 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  124 (262)
                      |...+..|...|++++|+..|.+..+..   +-++. ..+|+.+..+|.+.|++++|+..|++..+.    |-.. ...+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444567888999999999998886531   21222 568999999999999999999999988653    2111 1357


Q ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC--C----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch------
Q 037499          125 FNTLLNAMLTC-GKIDRMTDLFQIMEKYVSP--D----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL------  191 (262)
Q Consensus       125 ~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------  191 (262)
                      ++.+..+|... |++++|+..|++.....+.  +    ..++..+...+.+.|++++|...|++..+.......      
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            88899999996 9999999999988765441  1    457889999999999999999999999986433222      


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 037499          192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA------QVFASLIKGLC--AVGELSLALGFKEEMV  254 (262)
Q Consensus       192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~m~  254 (262)
                      ..|..+..++...|++++|...|++..+   +.|+.      ..+..++.+|.  ..+++++|+..|+++.
T Consensus       200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          200 DYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            1567777888999999999999999864   34432      23445566664  4567888888776553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=3.2e-12  Score=98.03  Aligned_cols=175  Identities=12%  Similarity=0.078  Sum_probs=129.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---
Q 037499           46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT------RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF---  116 (262)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  116 (262)
                      ..+.+..++..+...+...|++++|+.+++++.+..      ..+....++..+..+|...|++++|.+.+++..+.   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            344467788889999999999999999999887620      12344667888888999999999999999888754   


Q ss_pred             ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          117 ---NV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV--------SPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       117 ---~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                         +. +....++..+...|...|++++|...+++.....        +.....+..+...+...|++++|..+++++.+
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               21 2235677888888888899999998888876542        13455677788888888888888888888776


Q ss_pred             C------CCCC-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          185 R------RLQP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       185 ~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .      +..| ...++..+...+...|++++|...++++.+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4      1122 2346677777788888888888888887754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=2.5e-12  Score=90.75  Aligned_cols=164  Identities=12%  Similarity=0.016  Sum_probs=86.1

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      .......++..+.+.|++++|+..|+....           ..+.+...+..+...+.+.|++++|+..++...+..   
T Consensus         5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---   70 (176)
T 2r5s_A            5 PDEQLLKQVSELLQQGEHAQALNVIQTLSD-----------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---   70 (176)
T ss_dssp             -CTTHHHHHHHHHHTTCHHHHHHHHHTSCH-----------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---
Confidence            334455666666666777777766666622           333456666666666666666666666666665432   


Q ss_pred             ccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHH
Q 037499           85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNI  161 (262)
Q Consensus        85 ~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~  161 (262)
                      |+...+..+... +...+....|++.|++..+.. +.+...+..+..++...|++++|...|+++....+  .+...+..
T Consensus        71 p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~  149 (176)
T 2r5s_A           71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT  149 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred             CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence            233222221111 111112223455555555443 33455555555555566666666666655555444  12345555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHH
Q 037499          162 LMHGCVVSRRLEDAWKVFDEML  183 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~  183 (262)
                      +...+...|+.++|...|++..
T Consensus       150 l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          150 FMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcHHHHHHHHH
Confidence            5555555555555555555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.47  E-value=4.9e-13  Score=91.89  Aligned_cols=142  Identities=8%  Similarity=-0.093  Sum_probs=71.9

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH
Q 037499           60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID  139 (262)
Q Consensus        60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  139 (262)
                      .+...|++++|++.++......  +-+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|+++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence            3444455555555555554321  1223334445555555566666666655555543 344555555555556666666


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV-FDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                      +|+..|++..+..+.+..+|..+...|.+.|++++|.+. +++..+... -+..+|......+...|
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence            666666555555555555555555555555555544333 355444321 13344444444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.46  E-value=2.9e-11  Score=95.53  Aligned_cols=237  Identities=9%  Similarity=0.011  Sum_probs=167.6

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY--NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE-   86 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-   86 (262)
                      ......+...|++++|...++......        +...+  ...+++.+...+...|++++|.+.+++..+...-..+ 
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEEL--------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            345567778999999999988864321        11111  1235677788899999999999999988653111111 


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---
Q 037499           87 ---EIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQ--R-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---  153 (262)
Q Consensus        87 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---  153 (262)
                         ..++..+...+...|++++|.+.+++..+.    +.+  | ...++..+...+...|++++|...+++......   
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence               234667888899999999999999987643    222  2 234667788899999999999999998876543   


Q ss_pred             -C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHH-----HHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 037499          154 -P-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFG-----TLIYGLCLELRVDEALKLKEDMMRVYNVKP  225 (262)
Q Consensus       154 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~p  225 (262)
                       + ...++..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+++.... ...+
T Consensus       170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~  248 (373)
T 1hz4_A          170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFAN  248 (373)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCc
Confidence             1 235677888999999999999999999876421111 11121     2334477899999999999887643 1111


Q ss_pred             ---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          226 ---DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       226 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                         ....+..+...+...|++++|.+.+++..+
T Consensus       249 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               133567778889999999999999988754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.45  E-value=1.1e-11  Score=89.99  Aligned_cols=167  Identities=10%  Similarity=-0.060  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT----------------LLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                      ..+......+...|++++|+..|++..+.. +.+...|..                +..+|.+.|++++|+..|++..+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344555667889999999999999998864 445566777                899999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHH
Q 037499          152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQV  229 (262)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~  229 (262)
                      .+.+...+..+...+...|++++|...|++..+... .+..++..+..+|...|+  .+.+...+....   ...|....
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a  159 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYA  159 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhHH
Confidence            888999999999999999999999999999998743 356788888888776654  344555565553   22333334


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       230 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      +.....++...|++++|...|++.++  +.|+
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~  189 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence            45556677788999999999999887  4554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.44  E-value=4.2e-12  Score=108.13  Aligned_cols=173  Identities=9%  Similarity=-0.047  Sum_probs=147.9

Q ss_pred             HhcCChhHHHHHHHHHH--------hcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499           62 GRAKMFDEVQQILHQLK--------HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML  133 (262)
Q Consensus        62 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  133 (262)
                      ...|++++|++.+++..        +.  .+.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence            77899999999999998        43  35567789999999999999999999999999875 667889999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499          134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL  213 (262)
Q Consensus       134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  213 (262)
                      ..|++++|++.|++..+..+.+...|..+..++.+.|++++ ...|++..+.+. .+...|..+..++.+.|++++|+..
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999988889999999999999999999 999999998743 3667888999999999999999999


Q ss_pred             HHHHHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 037499          214 KEDMMRVYNVKPD-AQVFASLIKGLCAVGE  242 (262)
Q Consensus       214 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  242 (262)
                      |+++.+   ..|+ ...+..+..++...++
T Consensus       557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPP---TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence            998874   4665 5567777777766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.43  E-value=1.4e-10  Score=85.15  Aligned_cols=188  Identities=9%  Similarity=-0.040  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh---hH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK---SF  125 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~  125 (262)
                      +...+..+...+.+.|++++|+..|+++.+...-.| ....+..+..+|.+.|++++|++.|+++.+.. +.+..   ++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence            456677788889999999999999999987532122 24678888999999999999999999998764 22222   44


Q ss_pred             HHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037499          126 NTLLNAMLT------------------CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL  187 (262)
Q Consensus       126 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  187 (262)
                      ..+..++..                  .|++++|+..|+++.+..+.+...+........          +...+.    
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~----  147 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA----  147 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH----
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH----
Confidence            445555543                  467777777777777766544444332211100          000000    


Q ss_pred             CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       188 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                          .....+...|.+.|++++|+..|+++.+.+.-.| ....+..+..+|.+.|+.++|.+.++.+...
T Consensus       148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence                1112456678889999999999999987622111 1256788888999999999999999988775

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.43  E-value=3.6e-11  Score=94.98  Aligned_cols=241  Identities=11%  Similarity=0.037  Sum_probs=172.4

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR-YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---RVV   84 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~   84 (262)
                      +..++..+...|++++|...+++......      ..+.. ....++..+...+...|++++|+..+++..+..   +.+
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMAR------QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            45677888899999999999988643210      00110 112346778889999999999999998886531   111


Q ss_pred             --c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-C
Q 037499           85 --P-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ----RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-P-D  155 (262)
Q Consensus        85 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~-~  155 (262)
                        | ....+..+...+...|++++|...+++..+..-.    ....++..+...+...|++++|...+++...... + .
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~  209 (373)
T 1hz4_A          130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY  209 (373)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence              2 3456777888999999999999999988754211    1235677888899999999999999998875432 2 2


Q ss_pred             hhHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCC
Q 037499          156 ACSYN-----ILMHGCVVSRRLEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVK  224 (262)
Q Consensus       156 ~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~  224 (262)
                      ...+.     ..+..+...|++++|...+++.......+   ....+..+...+...|++++|...+++.....   +..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~  289 (373)
T 1hz4_A          210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM  289 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch
Confidence            12222     23345779999999999999887643221   12346677788999999999999999876531   212


Q ss_pred             CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          225 PDA-QVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       225 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++. ..+..+..++...|+.++|...+++..+
T Consensus       290 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            222 3666777889999999999999988764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.43  E-value=6.2e-12  Score=88.72  Aligned_cols=162  Identities=8%  Similarity=-0.071  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-  131 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-  131 (262)
                      .+......+.+.|++++|+..|++..+..  +.+...+..+..++.+.|++++|+..|++..+..  |+...+..+... 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~   83 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE   83 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence            45556667777777777777777776542  4456667777777777777777777777766543  233332222111 


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCHHHH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a  210 (262)
                      +...+...+|+..+++.....+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            1122223345666666666655666666666666666777777777766666653322 234556666666666666666


Q ss_pred             HHHHHHHH
Q 037499          211 LKLKEDMM  218 (262)
Q Consensus       211 ~~~~~~~~  218 (262)
                      ...|++..
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.42  E-value=3.1e-11  Score=92.00  Aligned_cols=171  Identities=11%  Similarity=0.023  Sum_probs=140.3

Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.....+.........
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            35567778888999999999999999999998875 66778999999999999999999999999877655333334444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      ...+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..+...|...|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            455778888999999999998874 3467788889999999999999999999998762112236789999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 037499          243 LSLALGFKEEMVR  255 (262)
Q Consensus       243 ~~~a~~~~~~m~~  255 (262)
                      .++|...+++...
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999888654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.42  E-value=2.3e-12  Score=88.48  Aligned_cols=145  Identities=11%  Similarity=-0.001  Sum_probs=118.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL  172 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  172 (262)
                      |...+...|++++|++.++...... +-+...+..+...|.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            4456667789999999999987653 334567778999999999999999999999999899999999999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH-HHHHHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 037499          173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDMMRVYNVKP-DAQVFASLIKGLCAVGE  242 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  242 (262)
                      ++|...|++..+... -+...+..+...|.+.|++++|.+. +++..+.   .| +..+|......+...|+
T Consensus        82 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCc
Confidence            999999999998643 2577888999999999999876665 5777764   44 56777777777777775

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.40  E-value=3e-11  Score=100.91  Aligned_cols=155  Identities=6%  Similarity=-0.067  Sum_probs=124.1

Q ss_pred             cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 037499           19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG   98 (262)
Q Consensus        19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (262)
                      .|++++|++.|++...           ..+.+...|..+...+.+.|++++|++.+++..+..  +.+...+..+..+|.
T Consensus         2 ~g~~~~A~~~~~~al~-----------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~   68 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR-----------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRW   68 (568)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            5789999999999843           344578899999999999999999999999999853  566888999999999


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CChhHH
Q 037499           99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS---RRLEDA  175 (262)
Q Consensus        99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a  175 (262)
                      ..|++++|.+.|++..+.. +.+...+..+..+|.+.|++++|.+.|++..+..+.+...+..+...+...   |++++|
T Consensus        69 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A  147 (568)
T 2vsy_A           69 TQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL  147 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence            9999999999999999875 567789999999999999999999999999998888889999999999999   999999


Q ss_pred             HHHHHHHHHCCC
Q 037499          176 WKVFDEMLKRRL  187 (262)
Q Consensus       176 ~~~~~~m~~~~~  187 (262)
                      .+.+++..+.+.
T Consensus       148 ~~~~~~al~~~p  159 (568)
T 2vsy_A          148 SAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCC
Confidence            999999988643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.40  E-value=8.8e-12  Score=95.28  Aligned_cols=202  Identities=11%  Similarity=0.005  Sum_probs=147.5

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY-NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---RVV   84 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~   84 (262)
                      +...+..|...|++++|++.|+.......      ..+.++ ...+|+.+..+|.+.|++++|+..+++..+..   |-.
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~  113 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQK------KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            45567788889999999999987633200      001122 25789999999999999999999999887632   111


Q ss_pred             c-cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCC---CC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC
Q 037499           85 P-EEIIFCNVISFYGRA-RLLEHALQVFDEMSSFNV---QR-T-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD  155 (262)
Q Consensus        85 ~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~  155 (262)
                      . ...++..+..+|... |++++|++.|++..+..-   .+ . ..++..+...+.+.|++++|+..|++.....+  +.
T Consensus       114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            1 145788899999996 999999999999876420   01 1 35688899999999999999999999988765  22


Q ss_pred             h-----hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch------HHHHHHHHHHH--hhCCHHHHHHHHHHHH
Q 037499          156 A-----CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL------VTFGTLIYGLC--LELRVDEALKLKEDMM  218 (262)
Q Consensus       156 ~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~  218 (262)
                      .     ..|..+..++...|++++|...|++..+.  .|+.      ..+..++.++.  ..+++++|++.|+++.
T Consensus       194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            2     15788888999999999999999998874  2321      13444555554  4567888888886664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.40  E-value=5.6e-11  Score=94.27  Aligned_cols=197  Identities=9%  Similarity=-0.020  Sum_probs=150.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCChhhHH
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDTRVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSFNV------QRTVKSFN  126 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~  126 (262)
                      ....+...|++++|+..+++..+...-.+    ...++..+..+|...|++++|++.+++..+..-      +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            66678889999999999999976311112    356788999999999999999999998875310      11235788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCchHHHH
Q 037499          127 TLLNAMLTCGKIDRMTDLFQIMEKYVS--P----DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RL-QPTLVTFG  195 (262)
Q Consensus       127 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~  195 (262)
                      .+..+|...|++++|++.|++.....+  .    ...++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            899999999999999999998865433  2    2357889999999999999999999998872    22 33466788


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 037499          196 TLIYGLCLELRVDEALKLKEDMMRVYN---VKPDAQVFASLIKGLCAVGE---LSLALGFKEEM  253 (262)
Q Consensus       196 ~li~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m  253 (262)
                      .+...+.+.|++++|...+++..+...   .+.....+..+...|...|+   .++|+.++++.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            899999999999999999998765421   11122335667778888888   77777776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.40  E-value=3e-11  Score=92.08  Aligned_cols=166  Identities=12%  Similarity=-0.083  Sum_probs=141.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH-HHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF-NTL  128 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l  128 (262)
                      +...+..+...+.+.|++++|+..|++..+..  +.+...+..+..++.+.|++++|...++++....  |+.... ...
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~  191 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence            56677888899999999999999999999864  5678889999999999999999999999998763  444333 333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRV  207 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~  207 (262)
                      ...+...++.++|+..+++.....+.+...+..+...+...|++++|...|+++.+..... +...+..++..+...|+.
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            3446778889999999999999889999999999999999999999999999999874332 267889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 037499          208 DEALKLKEDMMR  219 (262)
Q Consensus       208 ~~a~~~~~~~~~  219 (262)
                      ++|...+++...
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999988654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.39  E-value=1.4e-10  Score=88.01  Aligned_cols=184  Identities=14%  Similarity=0.103  Sum_probs=135.4

Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus        70 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                      |+..|++..+. + +++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus        85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            66677776654 2 45666667888999999999999999999877652 146678888999999999999999999999


Q ss_pred             HhcCCC----ChhHHHHHHHHH--Hh--cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          149 EKYVSP----DACSYNILMHGC--VV--SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       149 ~~~~~~----~~~~~~~l~~~~--~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .+..+.    +..+...++.++  ..  .++++.|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            775331    245555555553  33  34899999999999775  344334444555889999999999999977653


Q ss_pred             c-C-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          221 Y-N-------VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       221 ~-~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      . .       -+-|..+...+|......|+  +|.+++.++.+  ..|+
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~  285 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHE  285 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCC
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCC
Confidence            1 0       13366677677766677787  88999999987  4454

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.38  E-value=1.7e-10  Score=102.08  Aligned_cols=197  Identities=14%  Similarity=0.164  Sum_probs=113.3

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      ....++..+...|.+++|..+|++...               .....+.++   ...+++++|.++.++..       ++
T Consensus      1051 d~~eIA~Iai~lglyEEAf~IYkKa~~---------------~~~A~~VLi---e~i~nldrAiE~Aervn-------~p 1105 (1630)
T 1xi4_A         1051 DAPDIANIAISNELFEEAFAIFRKFDV---------------NTSAVQVLI---EHIGNLDRAYEFAERCN-------EP 1105 (1630)
T ss_pred             cHHHHHHHHHhCCCHHHHHHHHHHcCC---------------HHHHHHHHH---HHHhhHHHHHHHHHhcC-------CH
Confidence            345577888888999999999888721               112222222   25566666666666441       24


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      .+|..+..++.+.|++++|++.|.+.      -+...|..++.++.+.|++++|.+.+...++... ++...+.++.+|+
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~-e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALA 1178 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-cccccHHHHHHHH
Confidence            55666677777777777777666443      3445566666677777777777777666555432 2222223666666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037499          168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL  247 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  247 (262)
                      +.+++++...+.    +   .++...|..+...|...|++++|..+|...          ..|..+..+|.+.|++++|.
T Consensus      1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A         1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred             hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHH
Confidence            666655433221    1   223444445556666666666666666553          14555666666666666666


Q ss_pred             HHHHHH
Q 037499          248 GFKEEM  253 (262)
Q Consensus       248 ~~~~~m  253 (262)
                      +.+++.
T Consensus      1242 EaarKA 1247 (1630)
T 1xi4_A         1242 DGARKA 1247 (1630)
T ss_pred             HHHHHh
Confidence            555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.37  E-value=8.5e-11  Score=98.15  Aligned_cols=153  Identities=7%  Similarity=-0.142  Sum_probs=122.0

Q ss_pred             cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD  143 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  143 (262)
                      .|++++|++.+++..+..  +.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..+|...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            478899999999988743  5568889999999999999999999999999875 5678899999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh---CCHHHHHHHHHHHHHh
Q 037499          144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDMMRV  220 (262)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~  220 (262)
                      .+++..+..+.+...+..+..+|.+.|++++|.+.+++..+... .+...+..+...+...   |+.++|.+.+++..+.
T Consensus        79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99999998888899999999999999999999999999998743 3567888899999999   9999999999999876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.36  E-value=4.5e-11  Score=87.74  Aligned_cols=187  Identities=9%  Similarity=-0.062  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY-NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP   85 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   85 (262)
                      ..+..++..+.+.|++++|+..|+.+...         .+..+ ....+..+..++.+.|++++|+..|+++.+...-.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~---------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNR---------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            34567888999999999999999998542         12222 346788899999999999999999999987532222


Q ss_pred             c-HHHHHHHHHHHHh------------------cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499           86 E-EIIFCNVISFYGR------------------ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ  146 (262)
Q Consensus        86 ~-~~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  146 (262)
                      . ...+..+..++..                  .|++++|+..|+++.+.. |-+..++.......          .+..
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~  144 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKD  144 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHH
Confidence            2 1245555555544                  578999999999999764 33343433221110          0001


Q ss_pred             HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .+       ......+...|.+.|++++|...|+++.+.....  ....+..+..++.+.|++++|.+.++.+...
T Consensus       145 ~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          145 RL-------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HH-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            11       1112345667777888888888888877753211  1245667777788888888888888877653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.34  E-value=5.9e-10  Score=88.24  Aligned_cols=197  Identities=12%  Similarity=0.018  Sum_probs=149.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC-CC-Chhh
Q 037499           55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSF----NV-QR-TVKS  124 (262)
Q Consensus        55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~  124 (262)
                      ......+...|++++|+..|++..+...-.+    ...++..+..+|...|+++.|...+++..+.    +. .+ ...+
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  184 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS  184 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence            3455567788999999999999876321112    3557888999999999999999999987653    10 11 2457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCchHH
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLK-----RRLQPTLVT  193 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~  193 (262)
                      ++.+..+|...|++++|++.|++......      ....++..+...|...|++++|...+++..+     .. +....+
T Consensus       185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~  263 (378)
T 3q15_A          185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence            88899999999999999999988765322      2345788899999999999999999999887     42 334678


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVK--P-DAQVFASLIKGLCAVGE---LSLALGFKEE  252 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~  252 (262)
                      +..+...+.+.|++++|...+++..+...-.  | ....+..+...|...|+   ..+|+.++++
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            8889999999999999999999988753221  2 23345566666777777   7777776664

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.32  E-value=1.8e-10  Score=93.43  Aligned_cols=156  Identities=12%  Similarity=-0.029  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           89 IFCNVISFYGRAR---LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC----GKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        89 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                      .+..|...|...|   +.++|+++|++..+.| +++...+..+...|...    +++++|++.|++..   +.++..+..
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            4444455555555   5555555555555544 33333334444444332    45555555555544   233333444


Q ss_pred             HHHH-H--HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499          162 LMHG-C--VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-----RVDEALKLKEDMMRVYNVKPDAQVFASL  233 (262)
Q Consensus       162 l~~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l  233 (262)
                      +... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|+++|++..     .-+...+..|
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~L  324 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYL  324 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHH
Confidence            4433 2  33455555555555555443   3334444443333 33     5555555554443     1233334444


Q ss_pred             HHHHHh----cCChhHHHHHHHHHHHcC
Q 037499          234 IKGLCA----VGELSLALGFKEEMVRNK  257 (262)
Q Consensus       234 ~~~~~~----~g~~~~a~~~~~~m~~~g  257 (262)
                      ...|..    ..+.++|..+|++..+.|
T Consensus       325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          325 GQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            433333    224455555555544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.32  E-value=9.7e-10  Score=79.83  Aligned_cols=177  Identities=7%  Similarity=-0.104  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC----CHHHHHHH
Q 037499           69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG----KIDRMTDL  144 (262)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~  144 (262)
                      +|++.|++..+.    -++..+..+...|...+++++|+++|++..+.|   +...+..+...|.. +    ++++|++.
T Consensus         4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            456677777664    356677778888888888888888888887765   45667777777776 6    78888888


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CchHHHHHHHHHHHh----hCCHHHHHHHHH
Q 037499          145 FQIMEKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQ-PTLVTFGTLIYGLCL----ELRVDEALKLKE  215 (262)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~  215 (262)
                      |++..+.  .+...+..+...|..    .+++++|...|++..+.|.. .+...+..|...|..    .+++++|+.+|+
T Consensus        76 ~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           76 AEKAVEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8887654  456677777777776    77888888888888876532 125677777777777    778888888888


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 037499          216 DMMRVYNVKPDAQVFASLIKGLCAV-G-----ELSLALGFKEEMVRNKI  258 (262)
Q Consensus       216 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~  258 (262)
                      +..+.   ..+...+..|...|... |     +.++|..+|++..+.|.
T Consensus       154 ~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          154 GSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            88753   23444666666666653 3     78888888888877764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.32  E-value=5.5e-10  Score=80.92  Aligned_cols=130  Identities=8%  Similarity=-0.042  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...+..+...+...|++++|+..|++..     .|+..++..+..++.+.|++++|++.|++..+.. +.+..+|..+..
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~   79 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence            3456677888899999999999998763     4578889999999999999999999999998875 667788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDA----------------CSYNILMHGCVVSRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  186 (262)
                      +|...|++++|+..|++.....+.+.                ..+..+..+|.+.|++++|...|++..+..
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            99999999999999999988665444                788899999999999999999999998864

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.29  E-value=2.8e-09  Score=86.46  Aligned_cols=223  Identities=12%  Similarity=0.003  Sum_probs=161.2

Q ss_pred             CCCCHHHHHHHHhhcCChHHHH----HhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 037499            5 KPTSPFRLASLLRLQKDPKLAL----QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK---MFDEVQQILHQL   77 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~   77 (262)
                      ++..+..|+..+...+.++++.    .+++....              .++..+..+...|...|   +.++|++.|++.
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a  205 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--------------TTDICYVELATVYQKKQQPEQQAELLKQMEAG  205 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--------------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence            4455666777777766444443    34444321              13448888899999999   899999999999


Q ss_pred             HhcCCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHh
Q 037499           78 KHDTRVVPEEIIFCNVISFYGRA----RLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-M--LTCGKIDRMTDLFQIMEK  150 (262)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~  150 (262)
                      .+..  +++...+..+...|...    +++++|+++|++.. .|   +...+..+... +  ...+++++|++.|++..+
T Consensus       206 a~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          206 VSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             HHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred             HHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            8863  56666667777777665    79999999999987 43   45566667666 4  568899999999999887


Q ss_pred             cCCCChhHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhc
Q 037499          151 YVSPDACSYNILMHGCVVSR-----RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRVY  221 (262)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~  221 (262)
                      .+  +...+..+...|. .|     ++++|...|++.. .|   +...+..+...|..    ..++++|..+|++..+. 
T Consensus       280 ~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-  351 (452)
T 3e4b_A          280 AD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-  351 (452)
T ss_dssp             TT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-
T ss_pred             CC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-
Confidence            64  6777888888887 55     8999999999887 43   56667777766665    34999999999998764 


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 037499          222 NVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNKI  258 (262)
Q Consensus       222 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~  258 (262)
                      |. |  .....|...|..    ..+.++|..+|+...+.|.
T Consensus       352 g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          352 GQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             TC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             Ch-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence            42 3  344555555653    4578899999888877664

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.28  E-value=2.2e-09  Score=81.43  Aligned_cols=184  Identities=9%  Similarity=0.037  Sum_probs=136.4

Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHH
Q 037499           25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE  104 (262)
Q Consensus        25 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  104 (262)
                      |+..|+.....           .+++..++..+..++...|++++|++++.+......-.-+...+..++..+.+.|+.+
T Consensus        85 a~~~l~~l~~~-----------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d  153 (310)
T 3mv2_B           85 NIEELENLLKD-----------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS  153 (310)
T ss_dssp             CCHHHHHTTTT-----------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhc-----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence            67777766332           2446666778999999999999999999998654211246788889999999999999


Q ss_pred             HHHHHHHHHhhcCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499          105 HALQVFDEMSSFNVQR-----TVKSFNTLLNA--MLTCG--KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA  175 (262)
Q Consensus       105 ~a~~~~~~~~~~~~~~-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  175 (262)
                      .|.+.+++|.+.  .|     +..+...+..+  ....|  ++.+|..+|+++.... |+..+-..++.++.+.|++++|
T Consensus       154 ~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~eA  230 (310)
T 3mv2_B          154 TASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIAEA  230 (310)
T ss_dssp             HHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHHHH
Confidence            999999999875  45     35555666655  33334  8999999999986643 4433334444489999999999


Q ss_pred             HHHHHHHHHCC---------CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH
Q 037499          176 WKVFDEMLKRR---------LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA  227 (262)
Q Consensus       176 ~~~~~~m~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~  227 (262)
                      .+.++.+.+.-         -+.|..++..+|......|+  +|.++++++.+.   .|+.
T Consensus       231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~---~P~h  286 (310)
T 3mv2_B          231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL---DHEH  286 (310)
T ss_dssp             HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT---TCCC
T ss_pred             HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh---CCCC
Confidence            99999776531         13467777677777777787  889999999864   5553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.27  E-value=6.9e-10  Score=80.64  Aligned_cols=161  Identities=7%  Similarity=-0.101  Sum_probs=135.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhcCCCCChhhH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR----LLEHALQVFDEMSSFNVQRTVKSF  125 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~  125 (262)
                      ++..+..+...+...+++++|++.|++..+. |   +...+..|...|.. +    ++++|+++|++..+.|   +..++
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~   88 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE   88 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            7889999999999999999999999999875 2   56778888888887 7    8999999999998865   56678


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHH
Q 037499          126 NTLLNAMLT----CGKIDRMTDLFQIMEKYVSP--DACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFG  195 (262)
Q Consensus       126 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (262)
                      ..|...|..    .+++++|++.|++..+.++.  ++..+..+...|..    .+++++|...|++..+.  ..+...+.
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~  166 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence            888888887    88999999999999887653  37889999999988    88999999999999886  22445666


Q ss_pred             HHHHHHHhh-C-----CHHHHHHHHHHHHHh
Q 037499          196 TLIYGLCLE-L-----RVDEALKLKEDMMRV  220 (262)
Q Consensus       196 ~li~~~~~~-g-----~~~~a~~~~~~~~~~  220 (262)
                      .|...|... |     ++++|..+|++..+.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            777777643 3     899999999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.27  E-value=2.1e-09  Score=82.10  Aligned_cols=227  Identities=6%  Similarity=-0.054  Sum_probs=179.9

Q ss_pred             HHHhhcCCh-HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCccHHHH
Q 037499           14 SLLRLQKDP-KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK--MFDEVQQILHQLKHDTRVVPEEIIF   90 (262)
Q Consensus        14 ~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~   90 (262)
                      .+..+.|.+ ++|+++++.+..           -.+-+..+|+.-...+...+  ++++++++++.+....  +-+..+|
T Consensus        40 ~a~~~~~e~s~~aL~~t~~~L~-----------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW  106 (306)
T 3dra_A           40 LALMKAEEYSERALHITELGIN-----------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIW  106 (306)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHH-----------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHH
Confidence            333445555 689999999833           44557888999999999998  9999999999999864  4445555


Q ss_pred             HHHHHHH----Hhc---CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCChhHHHH
Q 037499           91 CNVISFY----GRA---RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID--RMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        91 ~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                      +.-..++    ...   +++++++++++++.+.. +-+..+|+--.-++.+.|.++  ++++.++++.+..+.|...|+.
T Consensus       107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~  185 (306)
T 3dra_A          107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH  185 (306)
T ss_dssp             HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5444444    444   78999999999999886 778899998888888899988  9999999999999999999998


Q ss_pred             HHHHHHhcCC------hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH-HHHHHHHHHHhc-CCCCCHHHHHHH
Q 037499          162 LMHGCVVSRR------LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDMMRVY-NVKPDAQVFASL  233 (262)
Q Consensus       162 l~~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~~p~~~~~~~l  233 (262)
                      -.....+.+.      ++++++.++.+....+ -|...|+.+-..+.+.|+... +..+..++.+.. .-..+...+..+
T Consensus       186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l  264 (306)
T 3dra_A          186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL  264 (306)
T ss_dssp             HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            8888878777      8999999999998754 377888888888888887544 445666554321 123477889999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 037499          234 IKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ..+|.+.|+.++|.++++.+.+
T Consensus       265 a~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          265 AKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHh
Confidence            9999999999999999999875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.26  E-value=2.1e-09  Score=82.10  Aligned_cols=163  Identities=9%  Similarity=-0.028  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcC-CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----hhHHH
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFN-VQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD----ACSYN  160 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~  160 (262)
                      ..+..+...|++++|.+.+++..+.. ..++.    ..+..+...+...|++++|+..|++......  .+    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34556667777777777777766532 11221    1233455566666677777777777665322  22    22567


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHH----C-CCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCCCC-HHHH
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLK----R-RLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVKPD-AQVF  230 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~  230 (262)
                      .+...|...|++++|...|+++.+    . +..+. ..++..+...|.+.|++++|...+++..+..   +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            777777777777777777777663    1 11112 2356666677777777777777776655421   11222 4566


Q ss_pred             HHHHHHHHhcCC-hhHHHHHHHHHH
Q 037499          231 ASLIKGLCAVGE-LSLALGFKEEMV  254 (262)
Q Consensus       231 ~~l~~~~~~~g~-~~~a~~~~~~m~  254 (262)
                      ..+..+|.+.|+ +++|.+.+++..
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            677777777774 477777766654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.26  E-value=2e-09  Score=90.92  Aligned_cols=218  Identities=10%  Similarity=-0.004  Sum_probs=172.3

Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHhcCCCCccHHHHHHHHHHHHhcC
Q 037499           23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ-QILHQLKHDTRVVPEEIIFCNVISFYGRAR  101 (262)
Q Consensus        23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (262)
                      +++..+|++.           +...+.+...|...+..+.+.|+.++|. .+|+.....  +|.+...|...+....+.|
T Consensus       326 ~Rv~~~Ye~a-----------L~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~  392 (679)
T 4e6h_A          326 ARMTYVYMQA-----------AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNT  392 (679)
T ss_dssp             HHHHHHHHHH-----------HHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH-----------HHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhC
Confidence            4456777777           3355668899999999999999999997 999999874  5677878888999999999


Q ss_pred             CHHHHHHHHHHHhhcCC---------CC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCChhHH
Q 037499          102 LLEHALQVFDEMSSFNV---------QR------------TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY  159 (262)
Q Consensus       102 ~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~  159 (262)
                      ++++|.++|+++.+...         .|            ...+|...+....+.|..+.|..+|....+. +......|
T Consensus       393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly  472 (679)
T 4e6h_A          393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY  472 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence            99999999999876310         13            1346888888888899999999999999876 43445555


Q ss_pred             HHHHHHHHhc-CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC-C--CHHHHHHHHH
Q 037499          160 NILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK-P--DAQVFASLIK  235 (262)
Q Consensus       160 ~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-p--~~~~~~~l~~  235 (262)
                      ...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++....  .+ +  ....|...+.
T Consensus       473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~--~~~~~~~~~lw~~~~~  549 (679)
T 4e6h_A          473 LENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK--ISDSHLLKMIFQKVIF  549 (679)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT--SSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence            5444444444 4599999999999987 3445667778888888899999999999999864  22 1  3467888888


Q ss_pred             HHHhcCChhHHHHHHHHHHHc
Q 037499          236 GLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       236 ~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .-.+.|+.+.+..+.+++.+.
T Consensus       550 fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          550 FESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            888999999999999999885

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.25  E-value=3e-10  Score=87.37  Aligned_cols=193  Identities=11%  Similarity=0.044  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-Chh
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDT---RVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVK  123 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  123 (262)
                      .|......|...|++++|...|.+..+..   +-++ -..+|..+..+|.+.|++++|+..|++..+.    |-+. ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            56666777777788888888877766531   1111 1346777777777788888888888776543    2111 134


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCc-hH
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-P-----DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPT-LV  192 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~  192 (262)
                      ++..+..+|.. |++++|+..|++.....+ .     ...++..+...|.+.|++++|...|++....    +..++ ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            56677777777 888888888877655432 1     1456777777888888888888888777653    11111 12


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCChhHHHH
Q 037499          193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ---VFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~  248 (262)
                      .+..+..++...|++++|...|++.. ...-.++..   ....++.++ ..|+.+.+.+
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            45555556666788888888887776 411111221   233444444 4566655555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.25  E-value=1.1e-10  Score=88.72  Aligned_cols=195  Identities=10%  Similarity=0.006  Sum_probs=136.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      +...+..+...+.+.|++++|+..|++..+..  +.+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            66788899999999999999999999999853  5578889999999999999999999999999875 66778899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE  209 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (262)
                      .+|...|++++|+..|++.....+.+...+...+....+.   .++. .+..........+......+ ..+ ..|+.++
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~  153 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERER  153 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence            9999999999999999988775542221221122211111   1111 11222223334444444444 232 3799999


Q ss_pred             HHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhc-CChhHHHHHHHHHHHc
Q 037499          210 ALKLKEDMMRVYNVKPDAQ-VFASLIKGLCAV-GELSLALGFKEEMVRN  256 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~m~~~  256 (262)
                      |++.+++..+   ..|+.. ....+...+.+. +.+++|.++|.+..+.
T Consensus       154 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999888764   356543 334444444444 6688899999877653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.25  E-value=1e-09  Score=73.03  Aligned_cols=123  Identities=9%  Similarity=0.001  Sum_probs=92.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499           45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS  124 (262)
Q Consensus        45 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  124 (262)
                      ...+.+...|..+...+...|++++|+..|++..+.  .+.+..++..+..++...|++++|++.+++..+.. +.+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~   86 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG   86 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence            344557778888888888888888888888888764  24467778888888888888888888888887764 456677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      +..+..++.+.|++++|.+.|++.....+.+...+..+..++.+.|
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            7777888888888888888888877766655666666666665544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.25  E-value=2.8e-09  Score=77.16  Aligned_cols=129  Identities=12%  Similarity=0.002  Sum_probs=112.6

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      .+..++..+...|++++|+..|+...              .++..+|..+...+.+.|++++|+..+++..+..  +.+.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~   71 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLA   71 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch
Confidence            35677888999999999999999982              2377899999999999999999999999998853  5678


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV----------------KSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                      ..+..+..++...|++++|++.|++..+.. +.+.                ..+..+..+|...|++++|.+.|+.....
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            889999999999999999999999998753 2222                78889999999999999999999999887


Q ss_pred             CC
Q 037499          152 VS  153 (262)
Q Consensus       152 ~~  153 (262)
                      .+
T Consensus       151 ~p  152 (213)
T 1hh8_A          151 KS  152 (213)
T ss_dssp             CC
T ss_pred             Cc
Confidence            66

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.24  E-value=1.1e-09  Score=75.87  Aligned_cols=126  Identities=10%  Similarity=0.005  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      +..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|+..+++.....+.+...+..+..++...
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            4444445555555555555555554433 334444555555555555555555555555554444455555555555555


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHH--HHHHHHHHhhCCHHHHHHHHHHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTF--GTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      |++++|...+++..+.... +...+  ......+...|++++|+..+...
T Consensus        95 ~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           95 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5555555555555543211 22222  22222244555666665555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.24  E-value=9.2e-10  Score=72.98  Aligned_cols=109  Identities=6%  Similarity=0.032  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...|......+.+.|++++|++.|++..+..  +.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~   89 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence            3445555566666666666666666655532  3445555556666666666666666666655544 444555555556


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      +|...|++++|++.|++..+..|.+...+..+
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            66666666666666665555555444444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.23  E-value=1.8e-09  Score=74.76  Aligned_cols=132  Identities=13%  Similarity=0.059  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      ....|..+...+...|++++|+..|++..+..  +.+..++..+..++...|++++|++.+++..+.. +.+..++..+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a   88 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            34556667777777777777777777776642  4456667777777777777777777777776654 44566677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHhcCChhHHHHHHHHHHH
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL--MHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      .++...|++++|...|++.....+.+...+..+  +..+...|++++|...+.....
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            777777777777777777776666555555333  3336666777777777665543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.22  E-value=7.4e-10  Score=73.32  Aligned_cols=121  Identities=10%  Similarity=0.053  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      .+...|..+...+...|+++.|+..+++..+..  +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~   86 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence            355666667777777777777777777776642  3456666667777777777777777777766654 4445666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL  172 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  172 (262)
                      ..++...|++++|...|++.....+.+...+..+..++.+.|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            66777777777777777776666555666666666666665553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.21  E-value=9.6e-10  Score=78.87  Aligned_cols=158  Identities=11%  Similarity=-0.004  Sum_probs=110.5

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CChhhHHHHHHHHHhc
Q 037499           61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQ-RTVKSFNTLLNAMLTC  135 (262)
Q Consensus        61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~  135 (262)
                      +...|++++|.+.++.+...  ......++..+...+...|++++|...+++..+.    +.. ....++..+...+...
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA   79 (203)
T ss_dssp             -----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence            34678899999966665542  2346778888888999999999999999887652    212 2345677888888899


Q ss_pred             CCHHHHHHHHHHHHhcCC--C-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCc--hHHHHHHHHHHHh
Q 037499          136 GKIDRMTDLFQIMEKYVS--P-----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR---LQPT--LVTFGTLIYGLCL  203 (262)
Q Consensus       136 g~~~~a~~~~~~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~li~~~~~  203 (262)
                      |++++|.+.+++......  +     ....+..+...+...|++++|...+++.....   ..+.  ..++..+...+..
T Consensus        80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  159 (203)
T 3gw4_A           80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ  159 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            999999999887765411  2     23457778888888899999998888876431   1111  2335667777888


Q ss_pred             hCCHHHHHHHHHHHHHh
Q 037499          204 ELRVDEALKLKEDMMRV  220 (262)
Q Consensus       204 ~g~~~~a~~~~~~~~~~  220 (262)
                      .|++++|.+.+++..+.
T Consensus       160 ~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          160 EKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            88998888888888765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.20  E-value=2.3e-09  Score=70.29  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...|..+...+...|++++|++.++++.+..  +.+..++..+..++...|++++|..+|+++.+.. +.+..++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   85 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN   85 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence            4455556666666666666666666665532  3345555556666666666666666666655543 344555555556


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ++...|++++|...|+++....+.+...+..+...+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            666666666666666665555444444444444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.20  E-value=1.4e-08  Score=77.45  Aligned_cols=166  Identities=10%  Similarity=-0.015  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----hh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT-----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD----AC  157 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~  157 (262)
                      .+...+..+...|++++|.+.+.+..+..-...     ...+..+...+...|++++|+..+++......  .+    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            445567788899999999999998876532211     12244466677888999999999999875433  11    45


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHH---C-CCCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCCC-CH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLK---R-RLQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVKP-DA  227 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~  227 (262)
                      +++.+...|...|++++|...+++..+   . +..+  ...++..+...|...|++++|+..+++..+..   +... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            889999999999999999999999873   2 1111  12588888999999999999999999876541   1111 16


Q ss_pred             HHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 037499          228 QVFASLIKGLCAVGELSLA-LGFKEEMV  254 (262)
Q Consensus       228 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~  254 (262)
                      .+|..+..+|.+.|+.++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            6888999999999999999 77777754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.20  E-value=1.5e-09  Score=83.50  Aligned_cols=174  Identities=11%  Similarity=0.022  Sum_probs=124.7

Q ss_pred             cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCH
Q 037499           64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKI  138 (262)
Q Consensus        64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~  138 (262)
                      .++++.|...|.+.                ...|...|++++|.+.|.+..+.    +-.+ ...+|+.+..+|...|++
T Consensus        29 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~   92 (307)
T 2ifu_A           29 KPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM   92 (307)
T ss_dssp             SCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             CCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH
Confidence            47788888877765                34667788999998888877543    2111 135788888888899999


Q ss_pred             HHHHHHHHHHHhcC----CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--chHHHHHHHHHHHhhCCH
Q 037499          139 DRMTDLFQIMEKYV----SP--DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ---P--TLVTFGTLIYGLCLELRV  207 (262)
Q Consensus       139 ~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g~~  207 (262)
                      ++|+..|++.....    .+  -..++..+...|.. |++++|+..|++..+....   +  ...++..+...|.+.|++
T Consensus        93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  171 (307)
T 2ifu_A           93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF  171 (307)
T ss_dssp             GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence            99999888765432    22  24577888888888 9999999999887753111   0  145777888888999999


Q ss_pred             HHHHHHHHHHHHhcCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          208 DEALKLKEDMMRVYNVKP---D-AQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       208 ~~a~~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      ++|+..|++..+...-.+   + ...+..+..++...|++++|...|++..
T Consensus       172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            999999988766421112   2 2366677777888899999999988876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.20  E-value=7.8e-11  Score=84.65  Aligned_cols=155  Identities=8%  Similarity=-0.054  Sum_probs=67.3

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE-   86 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-   86 (262)
                      .+...+......|+++++.+.++....           ........+..+...+...|++++|+..|++..+...-.|+ 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~   74 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDE-----------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW   74 (198)
T ss_dssp             ----------------CCCSGGGCCHH-----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred             cccchhhhhhhhhhccccCchhhCCHH-----------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence            344455555556666666666654411           11223445666666666677777777777666653211110 


Q ss_pred             -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           87 -------------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        87 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                                   ..++..+..+|.+.|++++|+..+++..+.. +.+..++..+..+|...|++++|+..|++.....+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  153 (198)
T 2fbn_A           75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  153 (198)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence                         1344444445555555555555555544432 33344444444445555555555555554444444


Q ss_pred             CChhHHHHHHHHHHhcCChhH
Q 037499          154 PDACSYNILMHGCVVSRRLED  174 (262)
Q Consensus       154 ~~~~~~~~l~~~~~~~g~~~~  174 (262)
                      .+...+..+..++...++.++
T Consensus       154 ~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          154 NNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444443333

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.20  E-value=2.8e-09  Score=81.36  Aligned_cols=216  Identities=8%  Similarity=-0.019  Sum_probs=174.1

Q ss_pred             CCCCCCCHHHHHHHHhhcC--ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----Hhc---CChhHHHH
Q 037499            2 NKAKPTSPFRLASLLRLQK--DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL----GRA---KMFDEVQQ   72 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~   72 (262)
                      +|.+...|+.-..++...|  +++++++.++.+..           ..+-+..+|+.-...+    ...   +++++++.
T Consensus        63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~-----------~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL-----------DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-----------HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-----------HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            5666667888888888888  99999999999843           4455777888777666    555   78999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC------HHHHHHH
Q 037499           73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLE--HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK------IDRMTDL  144 (262)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~  144 (262)
                      +++.+.+..  +-+..+|+.-.-++.+.+.++  ++++.++++.+.. +.|..+|+.-...+.+.+.      ++++++.
T Consensus       132 ~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~  208 (306)
T 3dra_A          132 ILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNY  208 (306)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            999999864  677888888777788888888  9999999999887 6788899888888888777      8999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 037499          145 FQIMEKYVSPDACSYNILMHGCVVSRRLED-AWKVFDEMLKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY  221 (262)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  221 (262)
                      +.++....+.|...|+-....+.+.|+... +..+..++.+.+  -..+...+..+...|.+.|+.++|.++++.+.+  
T Consensus       209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~--  286 (306)
T 3dra_A          209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS--  286 (306)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence            999999999999999999999988888554 556777666543  134678899999999999999999999999975  


Q ss_pred             CCCC-CHHHHHHH
Q 037499          222 NVKP-DAQVFASL  233 (262)
Q Consensus       222 ~~~p-~~~~~~~l  233 (262)
                      ...| ....|...
T Consensus       287 ~~Dpir~~yW~~~  299 (306)
T 3dra_A          287 KYNPIRSNFWDYQ  299 (306)
T ss_dssp             TTCGGGHHHHHHH
T ss_pred             ccChHHHHHHHHH
Confidence            3344 34445443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.19  E-value=1.2e-10  Score=90.83  Aligned_cols=87  Identities=11%  Similarity=-0.082  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499          123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC  202 (262)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  202 (262)
                      .+|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+... .+...+..+..++.
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence            44455555555555555555555555554444455555555555555555555555555554321 13344444444555


Q ss_pred             hhCCHHHH
Q 037499          203 LELRVDEA  210 (262)
Q Consensus       203 ~~g~~~~a  210 (262)
                      +.|+.++|
T Consensus       276 ~~~~~~~a  283 (336)
T 1p5q_A          276 RIRRQLAR  283 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.19  E-value=1.2e-09  Score=72.39  Aligned_cols=97  Identities=12%  Similarity=0.025  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      ..+......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|++..+..+.+...|..+..++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            456666777777777777777777776664 5566677777777777777777777777777766666777777777777


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 037499          168 VSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~  185 (262)
                      ..|++++|...|++..+.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            777777777777777664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.18  E-value=3.5e-09  Score=69.33  Aligned_cols=98  Identities=13%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++++....+.+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            4455666666666677777777776666553 344556666666666666666666666666665555556666666666


Q ss_pred             HhcCChhHHHHHHHHHHHC
Q 037499          167 VVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~  185 (262)
                      ...|++++|...++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            6666666666666666554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.18  E-value=1.1e-08  Score=78.05  Aligned_cols=167  Identities=11%  Similarity=0.015  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCC--hh
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSSFNV---QRT--VK  123 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~  123 (262)
                      .+...+..+...|++++|++.+.+..+.....++.    ..+..+...+...|++++|++.+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            34556778889999999999999887753222211    2344566777888999999999999875321   111  45


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-ch
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSP----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQP-TL  191 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~  191 (262)
                      +|+.+...|...|++++|+..|++..+.   .+.    ...++..+...|.+.|++++|...+++..+..    ... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            8899999999999999999999988732   221    22688999999999999999999999987531    111 15


Q ss_pred             HHHHHHHHHHHhhCCHHHH-HHHHHHHHH
Q 037499          192 VTFGTLIYGLCLELRVDEA-LKLKEDMMR  219 (262)
Q Consensus       192 ~~~~~li~~~~~~g~~~~a-~~~~~~~~~  219 (262)
                      .+|..+..+|.+.|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788888999999999999 777877654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.17  E-value=9.2e-10  Score=77.41  Aligned_cols=122  Identities=7%  Similarity=0.095  Sum_probs=99.1

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHhcCCH--
Q 037499           62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-MLTCGKI--  138 (262)
Q Consensus        62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--  138 (262)
                      ...|++++|+..++...+..  +.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            45688889999998888753  5677888889999999999999999999988765 5567778888888 7788888  


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499          139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  186 (262)
                      ++|...|++.....+.+...+..+...|...|++++|...|++..+..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            999999999988877778888889999999999999999999988863

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.17  E-value=3.3e-09  Score=70.43  Aligned_cols=120  Identities=8%  Similarity=-0.055  Sum_probs=78.3

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.+...+..+...+...|++++|.+.|++..+.. +.+..++..+..++...|++++|+..+++.....+.+...+..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            3455666777777777777777777777776654 445666777777777777777777777777666666666777777


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                      .++.+.|++++|...|++..+... .+...+..+..++...|
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence            777777777777777777666421 13344444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.16  E-value=2.8e-09  Score=76.41  Aligned_cols=157  Identities=11%  Similarity=-0.081  Sum_probs=109.0

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCC
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------VSPDACSYNILMHGCVVSRR  171 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~  171 (262)
                      ...|++++|.+.++.+.... .....++..+...+...|++++|...+++....      .+....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            45688888888555554321 235567888888888899999999888877652      22445677888888889999


Q ss_pred             hhHHHHHHHHHHHC----CCCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcC
Q 037499          172 LEDAWKVFDEMLKR----RLQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVG  241 (262)
Q Consensus       172 ~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g  241 (262)
                      +++|...+++..+.    +-.+  ....+..+...+...|++++|...+++..+......+    ..++..+..++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99998888887653    2111  2345777778888889999999888887643111122    234677778888899


Q ss_pred             ChhHHHHHHHHHHH
Q 037499          242 ELSLALGFKEEMVR  255 (262)
Q Consensus       242 ~~~~a~~~~~~m~~  255 (262)
                      ++++|.+.+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999888887654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.15  E-value=8.7e-10  Score=75.44  Aligned_cols=99  Identities=10%  Similarity=-0.011  Sum_probs=74.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      +...+..+...+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|+..|++.....+.++..|..+..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            34566677777777777777777777777765 55667777777777777777777777777777777777777777777


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 037499          166 CVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~  185 (262)
                      |.+.|++++|...|++..+.
T Consensus       114 ~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            77777777777777777775

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.15  E-value=1.1e-09  Score=74.80  Aligned_cols=99  Identities=10%  Similarity=-0.047  Sum_probs=59.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      +...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++.....+.+...+..+..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   98 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            34445555566666666666666666665544 44555566666666666666666666666665555555566666666


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 037499          166 CVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~  185 (262)
                      |...|++++|...|++..+.
T Consensus        99 ~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            66666666666666665553

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.15  E-value=2.3e-09  Score=80.25  Aligned_cols=204  Identities=12%  Similarity=-0.048  Sum_probs=149.2

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhcCC
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLI-------ITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      +.....+ ..++.+.|.+.|..+..           -.+-....|..+       ...+.+.++..+++..+..-.+   
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~-----------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---   75 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITN-----------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---   75 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHH-----------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---
Confidence            3444555 68999999999999843           445577888888       5666666666666666655544   


Q ss_pred             CCcc----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 037499           83 VVPE----------------------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR  140 (262)
Q Consensus        83 ~~~~----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  140 (262)
                      +.|+                      ......+...+...|++++|.++|+.+...+  |+......+...+.+.+++++
T Consensus        76 l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~d  153 (282)
T 4f3v_A           76 ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTD  153 (282)
T ss_dssp             CCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHH
Confidence            1221                      2345567788889999999999999988754  443366777778999999999


Q ss_pred             HHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499          141 MTDLFQIMEKYVSP--DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKED  216 (262)
Q Consensus       141 a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~  216 (262)
                      |+..|+.......+  ....+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|...|++
T Consensus       154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~  233 (282)
T 4f3v_A          154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW  233 (282)
T ss_dssp             HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999855443222  134788889999999999999999999985433243  33555666788999999999999999


Q ss_pred             HHHhcCCCCCHHHHHHH
Q 037499          217 MMRVYNVKPDAQVFASL  233 (262)
Q Consensus       217 ~~~~~~~~p~~~~~~~l  233 (262)
                      +...   .|+...+..|
T Consensus       234 a~a~---~P~~~~~~aL  247 (282)
T 4f3v_A          234 LQTT---HPEPKVAAAL  247 (282)
T ss_dssp             HHHH---SCCHHHHHHH
T ss_pred             HHhc---CCcHHHHHHH
Confidence            9876   5664444444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.14  E-value=1.8e-08  Score=76.90  Aligned_cols=167  Identities=11%  Similarity=0.006  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----hh
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI----IFCNVISFYGRARLLEHALQVFDEMSSFNVQ-RT----VK  123 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~  123 (262)
                      .+...+..+...|++++|..++++..+.....|+..    .+..+...+...+++++|++.|++..+.... ++    ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            344457788999999999999999987543344432    3445777778888999999999999874322 22    23


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCc-h
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPT-L  191 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~  191 (262)
                      +++.+..+|...|++++|+..|+++.+.     ..  ....++..+...|.+.|++++|...+++..+.    +..+. .
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            6899999999999999999999988742     11  23458899999999999999999999988753    22222 5


Q ss_pred             HHHHHHHHHHHhhC-CHHHHHHHHHHHHH
Q 037499          192 VTFGTLIYGLCLEL-RVDEALKLKEDMMR  219 (262)
Q Consensus       192 ~~~~~li~~~~~~g-~~~~a~~~~~~~~~  219 (262)
                      .+|..+..++.+.| ++++|.+.+++...
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            67888888999999 47999999988753

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.14  E-value=6.1e-10  Score=76.21  Aligned_cols=103  Identities=6%  Similarity=-0.016  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT  127 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  127 (262)
                      +.+...+..+...+.+.|++++|+..|++..+..  |.+...|..+..+|...|++++|++.|++..+.. |.+...|..
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~  109 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH  109 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence            4477889999999999999999999999999864  6678899999999999999999999999999876 667889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      +..+|...|++++|+..|++.....+
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999988654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.14  E-value=2e-09  Score=90.94  Aligned_cols=206  Identities=9%  Similarity=0.066  Sum_probs=162.7

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHH-HhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLAL-QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      |..+..|...+..+.+.|+.++|. ++|+....           ..+.+...|..++...-+.|+++.|.++|+.+....
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~-----------~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ-----------CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            455667888888888999999997 99998733           344577788889999999999999999999988631


Q ss_pred             ---------CCCc-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcC-CHH
Q 037499           82 ---------RVVP-----------EEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCG-KID  139 (262)
Q Consensus        82 ---------~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g-~~~  139 (262)
                               ..+.           ...+|...+....+.|+.+.|.++|.+..+. + ......|...+..-.+.+ +.+
T Consensus       409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e  487 (679)
T 4e6h_A          409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTK  487 (679)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHH
Confidence                     0111           2346888888888899999999999999875 2 223444544444444544 589


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      .|..+|+...+..+.+...|...+......|+.+.|..+|++.......  -....|...+..-.+.|+.+.+.++.+++
T Consensus       488 ~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~  567 (679)
T 4e6h_A          488 TACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF  567 (679)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999998887778888889999999999999999999999987432  14567888888888999999999999999


Q ss_pred             HHh
Q 037499          218 MRV  220 (262)
Q Consensus       218 ~~~  220 (262)
                      .+.
T Consensus       568 ~~~  570 (679)
T 4e6h_A          568 FEK  570 (679)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.14  E-value=2.9e-09  Score=70.39  Aligned_cols=117  Identities=9%  Similarity=-0.075  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...++......+.+...+..+...+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4455555566666666666666666655543 334555555566666666666666666665555444555555555555


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL  205 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  205 (262)
                      ...|++++|...+++..+... .+...+..+..++.+.|
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence            555555555555555555421 13334444444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.12  E-value=2.3e-09  Score=73.15  Aligned_cols=99  Identities=11%  Similarity=-0.096  Sum_probs=56.8

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499          121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG  200 (262)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  200 (262)
                      +...+..+...+.+.|++++|+..|+......+.+...|..+..+|...|++++|...|++...... .+...+..+..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~   98 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence            3444555555566666666666666666555555555666666666666666666666666555421 234455555555


Q ss_pred             HHhhCCHHHHHHHHHHHHHh
Q 037499          201 LCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       201 ~~~~g~~~~a~~~~~~~~~~  220 (262)
                      |...|++++|...|++..+.
T Consensus        99 ~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            66666666666666655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.12  E-value=1.7e-09  Score=76.04  Aligned_cols=121  Identities=12%  Similarity=0.092  Sum_probs=102.9

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHhcCCh--hH
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG-CVVSRRL--ED  174 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~  174 (262)
                      ...|++++|++.+++..+.. +.+...|..+..+|...|++++|+..|++.....+.+...+..+..+ +...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45788999999999988775 66778999999999999999999999999998888888899999998 8899998  99


Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      |...+++..+... .+...+..+...+...|++++|...|+++.+.
T Consensus       100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999999998742 35677888889999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.11  E-value=2.3e-08  Score=77.25  Aligned_cols=228  Identities=8%  Similarity=-0.020  Sum_probs=173.5

Q ss_pred             HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499           13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFC   91 (262)
Q Consensus        13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~   91 (262)
                      -....+.+..++|+++++.+..           -.+-+..+|+.--..+...+ .+++++++++.+....  +-+..+|+
T Consensus        61 r~~~~~~e~se~AL~lt~~~L~-----------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~  127 (349)
T 3q7a_A           61 RAIAAKEEKSERALELTEIIVR-----------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWH  127 (349)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHH-----------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHH
Confidence            3344456666789999999843           45558888999888888888 5999999999999853  66777888


Q ss_pred             HHHHHHHhc-C-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCChhHHHH
Q 037499           92 NVISFYGRA-R-LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID--------RMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        92 ~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                      .-..++.+. + ++++++++++++.+.. +.+..+|+--.-++.+.|.++        ++++.++++.+..+.|...|+.
T Consensus       128 hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~  206 (349)
T 3q7a_A          128 HRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW  206 (349)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            777777776 6 8999999999999876 678888887777776666666        9999999999998899999999


Q ss_pred             HHHHHHhcCC-------hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH--------------------HHHHHHH
Q 037499          162 LMHGCVVSRR-------LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV--------------------DEALKLK  214 (262)
Q Consensus       162 l~~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~  214 (262)
                      ....+.+.+.       ++++++.++++....+ -|...|+-+-..+.+.|+.                    .....+.
T Consensus       207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (349)
T 3q7a_A          207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG  285 (349)
T ss_dssp             HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence            9988888886       6889999999888643 3667777666666665543                    3334444


Q ss_pred             HHHHHhc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          215 EDMMRVY----NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       215 ~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ..+....    .-.++......|+..|...|+.++|.++++.+.+
T Consensus       286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            3443221    0136788899999999999999999999999864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.10  E-value=8.5e-09  Score=80.29  Aligned_cols=131  Identities=11%  Similarity=-0.002  Sum_probs=81.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---------------EIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      +...|..+...+.+.|++++|+..|++..+..  +.+               ..+|..+..+|.+.|++++|++.|++..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556666666666666666666666666542  222               3566666666666666666666666666


Q ss_pred             hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 037499          115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA-WKVFDEML  183 (262)
Q Consensus       115 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~  183 (262)
                      +.. +.+..+|..+..+|...|++++|+..|++..+..+.+...+..+..++.+.|++++| ...++.|.
T Consensus       224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654 445566666666666666666666666666666665666666666666666666665 33444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.10  E-value=3.1e-09  Score=71.93  Aligned_cols=101  Identities=16%  Similarity=0.081  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      +...+..+...+.+.|++++|+..|++.....  +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg   93 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence            44555556666666666666666666666542  3455566666666666666666666666666554 44555566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCC
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      .+|...|++++|...|+......+
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Confidence            666666666666666666655443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.09  E-value=4.1e-10  Score=85.52  Aligned_cols=195  Identities=7%  Similarity=-0.086  Sum_probs=132.6

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      .+...+..++..+.+.|++++|+..|+....           ..+.+...|..+..++.+.|++++|+..+++..+.  -
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~   68 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT-----------RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--D   68 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--C
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence            3445678889999999999999999998843           33448899999999999999999999999999874  3


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.+...+..+..++...|++++|++.|++..+.. +.+...+...+....+   ..++...........+.+......+.
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~  144 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLT  144 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            5668889999999999999999999999987653 1111122222222221   11122222222222224444444443


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCch-HHHHHHHHHHHhh-CCHHHHHHHHHHHHH
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKRRLQPTL-VTFGTLIYGLCLE-LRVDEALKLKEDMMR  219 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~  219 (262)
                      . + ..|++++|.+.++...+.  .|+. .....+...+.+. +.+++|.++|..+.+
T Consensus       145 ~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          145 R-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             H-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             H-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3 2 368899999998887765  3443 3333343444444 678899999987754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.09  E-value=1.6e-09  Score=81.15  Aligned_cols=187  Identities=7%  Similarity=-0.114  Sum_probs=140.0

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCccHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------
Q 037499           63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-------ISFYGRARLLEHALQVFDEMSSFNVQRT--------------  121 (262)
Q Consensus        63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------  121 (262)
                      ..++...|.+.|.++.+..  +-....|..+       ...+.+.++..+++..+..-..  +.|+              
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence            6899999999999999864  4556778777       4556666666666666655544  1221              


Q ss_pred             --------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--h
Q 037499          122 --------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--L  191 (262)
Q Consensus       122 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~  191 (262)
                              ...+..+...+...|++++|.++|+.+...++.+. ....+...+.+.+++++|+..|+...... .|.  .
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                    12344567788899999999999999887665344 66777778999999999999998655431 121  3


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ..+..+-.++.+.|++++|+..|++.... ...|.  .........++.+.|+.++|..+|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            36777888999999999999999999752 22254  346667777899999999999999999874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.08  E-value=8.3e-09  Score=68.16  Aligned_cols=96  Identities=5%  Similarity=0.005  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  132 (262)
                      .|..+...+.+.|++++|+..|++..+..  +.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            44444445555555555555555544431  3334444445555555555555555555444443 33344444444444


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 037499          133 LTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~  151 (262)
                      ...|++++|...|++....
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            5555555555554444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.07  E-value=2e-08  Score=64.93  Aligned_cols=108  Identities=8%  Similarity=-0.023  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...|..+...+...|++++|+..+++.....  +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   80 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            3445555555555666666666665555432  3344555555555555556666665555555443 334445555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                      ++...|++++|.+.++......+.+...+..
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  111 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEG  111 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            5555555555555555555544444444333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.3e-08  Score=67.13  Aligned_cols=98  Identities=8%  Similarity=-0.044  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++.....+.+...|..+..++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4456666667777777777777777776654 455666777777777777777777777777766666666777777777


Q ss_pred             HhcCChhHHHHHHHHHHHC
Q 037499          167 VVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~  185 (262)
                      ...|++++|...|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            7777777777777766654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.03  E-value=2e-08  Score=69.67  Aligned_cols=107  Identities=9%  Similarity=-0.002  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT  127 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  127 (262)
                      +.+...|..+...+.+.|++++|+..|++..+..  +.+...+..+..+|.+.|++++|+..|++..+.. +.+...|..
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~   84 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR   84 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            3466677778888888888888888888887753  4567777788888888888888888888877765 556677777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDAC  157 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  157 (262)
                      +..+|...|++++|+..|++.....+.+..
T Consensus        85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            888888888888888888877776664443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.02  E-value=1.2e-08  Score=69.04  Aligned_cols=99  Identities=9%  Similarity=-0.059  Sum_probs=80.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      +...+..+...+.+.|++++|++.|++..... +.+...|..+..+|.+.|++++|+..|++.....+.+...+..+..+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            44556667778888888888888888888765 56777888888888888888888888888888877777888888888


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 037499          166 CVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~  185 (262)
                      |...|++++|...|+...+.
T Consensus        96 ~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            88888888888888888765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.02  E-value=1.1e-09  Score=78.55  Aligned_cols=149  Identities=9%  Similarity=-0.062  Sum_probs=64.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---------------
Q 037499           58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV---------------  122 (262)
Q Consensus        58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------  122 (262)
                      +......|+++.+.+.|..-...  .......+..+...+.+.|++++|++.|++..+.. +.+.               
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             -----------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence            33344444555555554433221  11223445555556666666666666666665432 1111               


Q ss_pred             -hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHH
Q 037499          123 -KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL  201 (262)
Q Consensus       123 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  201 (262)
                       .+|..+..+|...|++++|+..++......+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence             3444445555555555555555555554444444455555555555555555555555544432 11233444444444


Q ss_pred             HhhCCHHHH
Q 037499          202 CLELRVDEA  210 (262)
Q Consensus       202 ~~~g~~~~a  210 (262)
                      ...++.+++
T Consensus       167 ~~~~~~~~~  175 (198)
T 2fbn_A          167 NKLKEARKK  175 (198)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            444444333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.02  E-value=3.1e-08  Score=68.61  Aligned_cols=101  Identities=8%  Similarity=0.028  Sum_probs=89.5

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3456778888899999999999999999998875 557888999999999999999999999999988888889999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHC
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      .+|...|++++|...|++..+.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999998876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.01  E-value=5.1e-08  Score=62.99  Aligned_cols=98  Identities=13%  Similarity=0.031  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4455666666677777777777777766554 445566666666677777777777777766666555666666666666


Q ss_pred             HhcCChhHHHHHHHHHHHC
Q 037499          167 VVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~  185 (262)
                      ...|++++|...+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            6777777777776666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.00  E-value=1.7e-08  Score=67.51  Aligned_cols=99  Identities=13%  Similarity=0.030  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      .+...|..+...+...|++++|+..|++..+..  +.+...+..+..++...|++++|+..|++..+.. +.+...+..+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            355566666666666666666666666665532  3345556666666666666666666666665544 3445555566


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEK  150 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~  150 (262)
                      ..++...|++++|+..|++...
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            6666666666666666655544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=7.3e-08  Score=65.12  Aligned_cols=115  Identities=10%  Similarity=-0.050  Sum_probs=90.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh
Q 037499           48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE----EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK  123 (262)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  123 (262)
                      +.+...+..+...+...|++++|+..|++..+.   .|+    ...+..+..+|...|++++|++.+++..+.. +.+..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  100 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK  100 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence            457788888889999999999999999998864   344    6778888888888899999999998887764 45677


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      .+..+..++...|++++|...|++.....+.+...+..+....
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            7888888888888888888888888877666666665554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.00  E-value=8.8e-09  Score=66.07  Aligned_cols=96  Identities=10%  Similarity=-0.045  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHH
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLL  129 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll  129 (262)
                      ..|..+...+...|++++|+..+++..+..  +.+...+..+..++...|++++|++.|++..+.. +.  +...+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            334444444444444444444444444321  2233344444444444444444444444444332 22  233444444


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHh
Q 037499          130 NAMLTC-GKIDRMTDLFQIMEK  150 (262)
Q Consensus       130 ~~~~~~-g~~~~a~~~~~~~~~  150 (262)
                      .++... |++++|.+.++....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhh
Confidence            444444 444444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.99  E-value=5.9e-07  Score=69.13  Aligned_cols=223  Identities=7%  Similarity=-0.050  Sum_probs=165.8

Q ss_pred             HHhhcCChH-HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCC
Q 037499           15 LLRLQKDPK-LALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM----------FDEVQQILHQLKHDTRV   83 (262)
Q Consensus        15 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~   83 (262)
                      ...+.|.++ +|+++++.+..           -.+-+..+|+.--..+...+.          +++++.+++.+....  
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~-----------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--  104 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILG-----------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--  104 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHT-----------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHH-----------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--
Confidence            334566666 79999999843           445577778876666655544          688999999998853  


Q ss_pred             CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCChhHHH
Q 037499           84 VPEEIIFCNVISFYGRAR--LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYN  160 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~  160 (262)
                      +-+..+|+.-..++.+.+  .+++++++++++.+.. +.|..+|+--.-++...|. ++++++.+..+.+..+.|...|+
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            667778887777777777  4899999999999887 7788999988888888888 69999999999999999999998


Q ss_pred             HHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-----------CCHHHHHHHHH
Q 037499          161 ILMHGCVVS--------------RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE-----------LRVDEALKLKE  215 (262)
Q Consensus       161 ~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~  215 (262)
                      .....+.+.              +.++++++.+.......+ -|...|+-+-..+.+.           +.++++++.++
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~  262 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK  262 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            877776665              457889999999888643 3666666444444444           46889999999


Q ss_pred             HHHHhcCCCCCH-HHHHHHHH---HHHhcCChhHHHHHHHHHHH
Q 037499          216 DMMRVYNVKPDA-QVFASLIK---GLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       216 ~~~~~~~~~p~~-~~~~~l~~---~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ++.+.   .||. -.+..++.   .....|..+++..++.++++
T Consensus       263 elle~---~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          263 ELQEL---EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHHHH---CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             HHHhh---CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            99875   5653 22222221   12245777888999999876

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.99  E-value=2.1e-08  Score=66.44  Aligned_cols=95  Identities=11%  Similarity=0.023  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------hhHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD-------ACSYNI  161 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~  161 (262)
                      .+..+...+.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|++++|++.+++..+..+.+       ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34445555555555555555555555443 3344455555555555555555555555544332211       123444


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHH
Q 037499          162 LMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       162 l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      +..++...|++++|.+.|++...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            44455555555555555555444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.98  E-value=3.2e-08  Score=66.17  Aligned_cols=101  Identities=7%  Similarity=-0.073  Sum_probs=79.1

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..++......+.+...+..+.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            3456677778888888888888888888877765 556677888888888888888888888888777777777888888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHC
Q 037499          164 HGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      .++...|++++|...|++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            8888888888888888877764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.98  E-value=3.1e-08  Score=65.63  Aligned_cols=109  Identities=6%  Similarity=0.012  Sum_probs=88.8

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCc----hHHHH
Q 037499          122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPT----LVTFG  195 (262)
Q Consensus       122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~  195 (262)
                      ..++..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..+++..+...  .++    ..+|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            346778899999999999999999999998888899999999999999999999999999887421  111    23677


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499          196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL  233 (262)
Q Consensus       196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  233 (262)
                      .+..++...|++++|++.|++....   .||..+...+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~l  122 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHHH
Confidence            7778888999999999999998765   5676654433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.97  E-value=1.5e-08  Score=66.92  Aligned_cols=94  Identities=11%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------hhHHHHH
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD-------ACSYNIL  162 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l  162 (262)
                      +..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.....+.+       ..++..+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            4444444444455555555554444432 2334444444444444455555544444443332211       3344444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      ..++.+.|++++|...|++..+
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            4444444444444444444444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.96  E-value=2.1e-08  Score=64.26  Aligned_cols=101  Identities=6%  Similarity=-0.018  Sum_probs=90.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--ChhHHHHHH
Q 037499           86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP--DACSYNILM  163 (262)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~  163 (262)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+..+.  +...+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            45567788889999999999999999998875 567788999999999999999999999999988777  899999999


Q ss_pred             HHHHhc-CChhHHHHHHHHHHHCCC
Q 037499          164 HGCVVS-RRLEDAWKVFDEMLKRRL  187 (262)
Q Consensus       164 ~~~~~~-g~~~~a~~~~~~m~~~~~  187 (262)
                      .++.+. |++++|.+.+++......
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhccc
Confidence            999999 999999999999998743

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.91  E-value=1.6e-07  Score=75.40  Aligned_cols=213  Identities=8%  Similarity=-0.111  Sum_probs=146.5

Q ss_pred             CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCC-CCCCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499            7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQ-PLKPF-----RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD   80 (262)
Q Consensus         7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   80 (262)
                      .+-..-+..+.+.|++++|++.|..+.......... ...+.     +....++..++..|...|++++|.+.+.++...
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344455778899999999999998765432100000 00000     001134778999999999999999999988763


Q ss_pred             CCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           81 TRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSS----FNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        81 ~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                      .+..++.    .+.+.+...+...|++++|.+++.....    .+..+. ..++..+...|...|++++|..+++.....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            2222222    2333444455567899999999987753    222222 457788999999999999999999887654


Q ss_pred             CC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          152 VS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       152 ~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ..      ....++..++..|...|++++|..+++.....    +.++.  ...+..+...+...|++++|...|.+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            22      23457889999999999999999999887653    11111  24556666777888999999988877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.91  E-value=3.7e-08  Score=64.96  Aligned_cols=114  Identities=5%  Similarity=-0.000  Sum_probs=94.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCc----hHHHH
Q 037499          122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPT----LVTFG  195 (262)
Q Consensus       122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~  195 (262)
                      ...+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++......  .++    ..++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            456788889999999999999999999988888889999999999999999999999999887532  112    66788


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499          196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC  238 (262)
Q Consensus       196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  238 (262)
                      .+..++...|++++|.+.|++..+.   .|+......+..+..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~  123 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            8889999999999999999999875   456666655554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.5e-07  Score=75.61  Aligned_cols=199  Identities=10%  Similarity=0.037  Sum_probs=143.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-C
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDTRVVPE---------------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ-R  120 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~  120 (262)
                      -...+.+.|++++|++.|.++.+...-..+               ...+..+...|...|++++|.+++..+.+.--. +
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            456778899999999999999875311111               234778999999999999999999987653111 1


Q ss_pred             Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-
Q 037499          121 TV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----S--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RL-  187 (262)
Q Consensus       121 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~-  187 (262)
                      +.    .+.+.+...+...|++++|..+++......    .  .-..++..+...|...|++++|..+++++...  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            11    233344445556789999999998775432    1  23567888999999999999999999988753  11 


Q ss_pred             -CC-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-CC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          188 -QP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VK-P-D--AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       188 -~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-p-~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                       .+ ...++..++..|...|++++|..++++...... +. | .  ...+..+...+...|++++|...|.+..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             11 245788888999999999999999988765311 11 2 1  24566667777889999999988877654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.89  E-value=1.6e-07  Score=72.56  Aligned_cols=217  Identities=14%  Similarity=-0.012  Sum_probs=162.3

Q ss_pred             CCCCCCCHHHHHHHHhhcC-ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHHHHHH
Q 037499            2 NKAKPTSPFRLASLLRLQK-DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA-K-MFDEVQQILHQLK   78 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~   78 (262)
                      +|.+...|+.-..++...| +++++++.++.+.           ...+-+..+|+.-...+.+. + ++++++++++.+.
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-----------~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-----------VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-----------HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----------HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            4556666777777787888 5999999999984           35566889999988888887 7 8999999999999


Q ss_pred             hcCCCCccHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-------HHHHHH
Q 037499           79 HDTRVVPEEIIFCNVISFYGRARLLE--------HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-------IDRMTD  143 (262)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~  143 (262)
                      +..  +-+..+|+.-.-++.+.+.++        ++++.++++.+.. +.|..+|+-....+.+.+.       ++++++
T Consensus       153 ~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe  229 (349)
T 3q7a_A          153 LPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELI  229 (349)
T ss_dssp             SSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred             HhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence            854  566777776555555555555        8999999999887 6788999999888888876       789999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC-----CCCchHHHHHHH
Q 037499          144 LFQIMEKYVSPDACSYNILMHGCVVSRRL--------------------EDAWKVFDEMLKRR-----LQPTLVTFGTLI  198 (262)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~m~~~~-----~~~~~~~~~~li  198 (262)
                      .+.+.....+.|...|+-+-..+.+.|..                    .........+...+     -.++...+..++
T Consensus       230 ~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~  309 (349)
T 3q7a_A          230 YILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA  309 (349)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence            99999998899999998877777776654                    23333333333321     135788899999


Q ss_pred             HHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 037499          199 YGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLI  234 (262)
Q Consensus       199 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~  234 (262)
                      ..|...|+.++|.++++.+.+  ...| ...-|...+
T Consensus       310 d~~~~~~~~~~a~~~~~~l~~--~~dpir~~yw~~~~  344 (349)
T 3q7a_A          310 DSFIEQNRVDDAAKVFEKLSS--EYDQMRAGYWEFRR  344 (349)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--TTCGGGHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHh--hhChHHHHHHHHHH
Confidence            999999999999999999975  3344 333444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.8e-07  Score=63.20  Aligned_cols=99  Identities=9%  Similarity=-0.076  Sum_probs=75.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN  160 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  160 (262)
                      .+...+..+...+...|++++|++.|++..+..  |+    ...+..+..+|...|++++|+..+++.....+.+...+.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            456677777888888888888888888887653  44    566777777788888888888888877776666677777


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      .+..++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            7777777778888888777777765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.86  E-value=4.4e-08  Score=64.28  Aligned_cols=96  Identities=4%  Similarity=-0.093  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  132 (262)
                      .+..+...+.+.|++++|+..|++..+..  +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34445555666666666666666665532  3445555566666666666666666666665553 33455555566666


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 037499          133 LTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~  151 (262)
                      ...|++++|+..|++..+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666655543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.84  E-value=3e-07  Score=60.61  Aligned_cols=95  Identities=12%  Similarity=0.007  Sum_probs=50.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---hhhHHHHH
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEE---IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT---VKSFNTLL  129 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll  129 (262)
                      .+...+...|++++|+..|+.+.+..  +.+.   ..+..+..++.+.|++++|...|++..+.. +.+   ..++..+.
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la   83 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence            34455555666666666666655532  1122   345555555556666666666666555543 222   34455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCC
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      .++...|++++|...|+.+....+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC
Confidence            555555555555555555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.83  E-value=8.1e-08  Score=62.99  Aligned_cols=95  Identities=9%  Similarity=-0.075  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      +..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+..+.+...+..+..++.+.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            5567778889999999999999999875 667889999999999999999999999999999888899999999999999


Q ss_pred             CChhHHHHHHHHHHHC
Q 037499          170 RRLEDAWKVFDEMLKR  185 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~  185 (262)
                      |++++|...+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.82  E-value=8e-08  Score=78.39  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=88.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499           55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT  134 (262)
Q Consensus        55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  134 (262)
                      ..+...+.+.|++++|++.+++..+..  +.+..++..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|..
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   86 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            334456677788888888888887752  4557778888888888888888888888887765 5566777888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHhcCChhHHHHHHH
Q 037499          135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHG--CVVSRRLEDAWKVFD  180 (262)
Q Consensus       135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~  180 (262)
                      .|++++|++.|++..+..+.+...+..+..+  +.+.|++++|.+.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888888888888877766555566666555  777788888888777

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.82  E-value=1.4e-07  Score=76.57  Aligned_cols=123  Identities=11%  Similarity=0.013  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT---------------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                      ...+..+...+.+.|++++|+..|++..+.. +.+               ..+|..+..+|.+.|++++|+..+++....
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4445555555555555555555555554432 111               355666666666666666666666666666


Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHH
Q 037499          152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL  211 (262)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  211 (262)
                      .+.+...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++.+++.
T Consensus       347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666666666666665421 23445555666666666665554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.81  E-value=6.3e-09  Score=84.89  Aligned_cols=124  Identities=10%  Similarity=0.008  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      +..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+..+.+...|..+..+|...
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3344556778899999999999998875 566889999999999999999999999999998888889999999999999


Q ss_pred             CChhHHHHHHHHHHHCCCCCchHHHHHHHHH--HHhhCCHHHHHHHHH
Q 037499          170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG--LCLELRVDEALKLKE  215 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  215 (262)
                      |++++|...|++..+.... +...+..+..+  +.+.|++++|++.++
T Consensus        88 g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999886322 34455555555  788899999999988

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.80  E-value=1.5e-07  Score=74.27  Aligned_cols=138  Identities=6%  Similarity=-0.086  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  132 (262)
                      .|..+...+.+.|++++|++.|++..+..   +...          ....       .++..+.. +.+..+|..+..+|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~  283 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHH
Confidence            45666667777777777777777666510   0000          0000       00000011 22345566666666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHH
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK  212 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  212 (262)
                      .+.|++++|++.+++..+..+.+...|..+..+|...|++++|...|++..+... .+...+..+..++...++.+++.+
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665555566666666666666666666666666665421 244455555555555565555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.79  E-value=7.1e-07  Score=58.76  Aligned_cols=93  Identities=12%  Similarity=0.016  Sum_probs=52.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHH
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD---ACSYNILMHG  165 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~  165 (262)
                      .+...+...|++++|.+.|++..+.. +.+.   ..+..+..++.+.|++++|...|+......+.+   ...+..+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            34455556666666666666665543 2222   355555566666666666666666665554433   4445555566


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 037499          166 CVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~  185 (262)
                      +...|++++|...|+.+.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            66666666666666665554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.79  E-value=1.7e-07  Score=64.06  Aligned_cols=130  Identities=13%  Similarity=0.050  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C----Chh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNV---QRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--P----DAC  157 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~  157 (262)
                      ++..+...+...|++++|++.+++..+..-   .+.  ..++..+...+...|++++|.+.+++......  .    ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            344444444445555555555544432210   000  12344444455555555555555544432211  1    123


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499          158 SYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMM  218 (262)
Q Consensus       158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  218 (262)
                      .+..+...+...|++++|...+++..+.    +.. ....++..+...+...|++++|.+.+++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3444455555555555555555444332    100 012234444445555555555555555544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.79  E-value=2.7e-07  Score=74.92  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=105.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---------------EIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      ....|..+...+.+.|++++|+..|++..+..  +.+               ..+|..+..+|.+.|++++|+..|++..
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45578888899999999999999999998753  223               5788889999999999999999999998


Q ss_pred             hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH-HHHHHHH
Q 037499          115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK-VFDEMLK  184 (262)
Q Consensus       115 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~  184 (262)
                      +.. +.+..+|..+..+|...|++++|+..|++..+..+.+...+..+..++.+.++.+++.+ .++.|..
T Consensus       345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            876 66788899999999999999999999999998888778888999999988888877654 4454443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.79  E-value=2.3e-07  Score=63.37  Aligned_cols=135  Identities=15%  Similarity=0.107  Sum_probs=104.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-c
Q 037499          122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQP-T  190 (262)
Q Consensus       122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~-~  190 (262)
                      ..++..+...+...|++++|+..+++......  .+    ..++..+...+...|++++|...+++..+..    ..+ .
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            34678888899999999999999988765433  22    2478889999999999999999999977631    111 1


Q ss_pred             hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP----DAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       191 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ...+..+...+...|++++|...+++..+...-..    ....+..+...|...|++++|.+.+++..+.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45677788889999999999999998765421111    2456788888999999999999999987753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.78  E-value=2.8e-07  Score=63.64  Aligned_cols=64  Identities=9%  Similarity=0.143  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      ...|..+..+|.+.|++++|+..++......+.+...|..+..+|...|++++|...|++..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            3456666666666666666666666666665566666666666666666666666666666654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.77  E-value=1.7e-07  Score=64.71  Aligned_cols=106  Identities=12%  Similarity=0.048  Sum_probs=90.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--------C--------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--------R--------VVPEEIIFCNVISFYGRARLLEHALQVFDEM  113 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  113 (262)
                      ....+......+.+.|++++|+..|.+.....        .        -+.+..+|..+..+|.+.|++++|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            46678889999999999999999999988740        0        1234568889999999999999999999999


Q ss_pred             hhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499          114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA  156 (262)
Q Consensus       114 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  156 (262)
                      .+.. +.+..+|..+..+|...|++++|...|++.....+.+.
T Consensus        90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            9876 66788999999999999999999999999988776555

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.75  E-value=1.3e-05  Score=61.78  Aligned_cols=202  Identities=10%  Similarity=0.014  Sum_probs=148.4

Q ss_pred             HHHHHHHHH---HHhcCChh-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcC
Q 037499           52 LHYDLIITK---LGRAKMFD-EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL----------LEHALQVFDEMSSFN  117 (262)
Q Consensus        52 ~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~  117 (262)
                      ..|..+...   ..+.|.++ +|+.++..+....  |-+..+|+.--.++...+.          +++++.+++.+....
T Consensus        27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            344444433   33456655 8999999999743  3444555543333333332          678999999998876


Q ss_pred             CCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCchHHH
Q 037499          118 VQRTVKSFNTLLNAMLTCG--KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR-LEDAWKVFDEMLKRRLQPTLVTF  194 (262)
Q Consensus       118 ~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~  194 (262)
                       +-+..+|+.-..++...|  .+++++.+++.+.+..+-|..+|+.-.-.....|. ++++++.++.+.+..+. |...|
T Consensus       105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW  182 (331)
T 3dss_A          105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW  182 (331)
T ss_dssp             -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred             -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence             678889988888888888  48999999999999999999999988888888888 58999999999987544 66777


Q ss_pred             HHHHHHHHhh--------------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CChhHHHHH
Q 037499          195 GTLIYGLCLE--------------LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV-----------GELSLALGF  249 (262)
Q Consensus       195 ~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~  249 (262)
                      +.....+...              +.++++++.+.+....  .+-|...|+.+-..+.+.           +.++++++.
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~  260 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES  260 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence            7666665554              5688999999998874  244667776665555554           457889999


Q ss_pred             HHHHHHcCCCCC
Q 037499          250 KEEMVRNKIEMD  261 (262)
Q Consensus       250 ~~~m~~~g~~pd  261 (262)
                      ++++.+  +.||
T Consensus       261 ~~elle--~~pd  270 (331)
T 3dss_A          261 CKELQE--LEPE  270 (331)
T ss_dssp             HHHHHH--HCTT
T ss_pred             HHHHHh--hCcc
Confidence            999887  4565

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.75  E-value=3.1e-08  Score=64.53  Aligned_cols=61  Identities=8%  Similarity=-0.020  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK  150 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  150 (262)
                      .+..+..+|...|++++|++.|++..+.. +.+..++..+..++...|++++|+..|++...
T Consensus        29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444444444444444444444444332 22333444444444444444444444444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.75  E-value=3.1e-07  Score=72.36  Aligned_cols=138  Identities=11%  Similarity=-0.037  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      .+..+...+.+.|++++|++.|++..+.-  +...          ....       .+......+.+..+|..+..+|.+
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla~~~~~  285 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQPVALSCVLNIGACKLK  285 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35566677777777777777777766421  1100          0000       111112233567889999999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499          169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  248 (262)
                      .|++++|...+++..+... .+...+..+..+|...|++++|+..|++..+.  .+-+...+..+..++...++.+++..
T Consensus       286 ~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          286 MSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998642 36778888999999999999999999999875  22366778888888888888777754

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.70  E-value=1.1e-07  Score=74.10  Aligned_cols=148  Identities=6%  Similarity=-0.052  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ...|..+...+.+.|++++|+..|++..+.   .|+...       +...++..++...+          ....|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence            344555666666667777777777776653   233221       11122222222111          0136777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH-HHhhCCHHH
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG-LCLELRVDE  209 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~  209 (262)
                      +|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+... -+...+..+... ....+..+.
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888877777778888888888888888888888888776422 133444444433 234456677


Q ss_pred             HHHHHHHHHH
Q 037499          210 ALKLKEDMMR  219 (262)
Q Consensus       210 a~~~~~~~~~  219 (262)
                      +.++|.++..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            7777877764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.69  E-value=6.5e-08  Score=62.95  Aligned_cols=86  Identities=9%  Similarity=0.044  Sum_probs=44.9

Q ss_pred             cCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499          100 ARLLEHALQVFDEMSSFN--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK  177 (262)
Q Consensus       100 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  177 (262)
                      .|++++|+..|++..+.+  -+.+..++..+..+|...|++++|+..|++..+..+.+..++..+..++.+.|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            355555666666555542  122334555555555555566666665555555555555555555555555555555555


Q ss_pred             HHHHHHHC
Q 037499          178 VFDEMLKR  185 (262)
Q Consensus       178 ~~~~m~~~  185 (262)
                      .+++....
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.60  E-value=2.7e-07  Score=71.90  Aligned_cols=148  Identities=10%  Similarity=-0.061  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      ...+..+...+.+.|++++|+..|++..+..  |+...       +...|+.+++...+.         ...|..+..+|
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~  240 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence            4456677788888899999999998877652  43221       223344444443321         24788999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH-HHhcCChh
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKG-LCAVGELS  244 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~  244 (262)
                      .+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+   +.|+ ...+..+... ....+..+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999864 23678889999999999999999999999874   3454 4455555544 33456778


Q ss_pred             HHHHHHHHHHHc
Q 037499          245 LALGFKEEMVRN  256 (262)
Q Consensus       245 ~a~~~~~~m~~~  256 (262)
                      ++..+|.+|...
T Consensus       317 ~a~~~~~~~l~~  328 (338)
T 2if4_A          317 KQKEMYKGIFKG  328 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhhCC
Confidence            888899888753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.59  E-value=1.6e-06  Score=59.00  Aligned_cols=93  Identities=11%  Similarity=-0.050  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRT-------------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----  151 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----  151 (262)
                      +......+.+.|++++|++.|++..+..  |+             ...|..+..++.+.|++++|+..+++..+.     
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            4445555556666666666666655432  22             125666666666666666666666666555     


Q ss_pred             --CCCChhHH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          152 --VSPDACSY----NILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       152 --~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                        .+.+...|    .....++...|++++|+..|++..+
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence              44555555    6666666666666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.54  E-value=1.8e-05  Score=65.96  Aligned_cols=173  Identities=8%  Similarity=-0.011  Sum_probs=138.5

Q ss_pred             CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499           65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL----------LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT  134 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  134 (262)
                      ...++|++.++++.+..  +-+..+|+.--.++...++          ++++++.++.+.+.. +-+..+|+.-..++.+
T Consensus        43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            44568899999999863  4556667766666666666          899999999999876 6788899998888999


Q ss_pred             cC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-------
Q 037499          135 CG--KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE-------  204 (262)
Q Consensus       135 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------  204 (262)
                      .|  +++++++.++++.+..+.+..+|+.-...+.+.| .++++.+.++++.+..+. |...|+.....+.+.       
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence            99  7799999999999999999999999888888999 899999999999887543 667777766666553       


Q ss_pred             -------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037499          205 -------LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL  243 (262)
Q Consensus       205 -------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  243 (262)
                             +.++++++.+++....  .+-|...|..+-..+.+.++.
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred             ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence                   6689999999998864  233667777777677766653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.49  E-value=5e-06  Score=56.58  Aligned_cols=102  Identities=14%  Similarity=0.084  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-----c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-----E-----EIIFCNVISFYGRARLLEHALQVFDEMSSF----  116 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  116 (262)
                      ...+......+.+.|++++|+..|++..+...-.|     +     ...|..+..++.+.|++++|+..+++.++.    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            45567788889999999999999999987531100     2     338999999999999999999999999886    


Q ss_pred             ---CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499          117 ---NVQRTVKSF----NTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus       117 ---~~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                         . +-+...|    .....++...|++++|+..|++..+..+
T Consensus        91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence               5 4456788    8999999999999999999999876544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.49  E-value=1.5e-06  Score=55.41  Aligned_cols=65  Identities=12%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      ..+..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++.....+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            334444444445555555555555444433 33344444444455555555555555554444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.48  E-value=4e-06  Score=51.30  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      .+..+...+...|++++|++.|++..+.. +.+..++..+..++...|++++|...|++.....+.+...+..+..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            33444444444444444444444444332 2233344444444444444444444444444433333333333333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.48  E-value=1.8e-06  Score=55.71  Aligned_cols=80  Identities=9%  Similarity=0.067  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                      .|+..|++..+.  -+.+...+..+..+|...|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345555555543  23445556666666666666666666666666554 344555666666666666666666666665


Q ss_pred             Hhc
Q 037499          149 EKY  151 (262)
Q Consensus       149 ~~~  151 (262)
                      ...
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.44  E-value=3.1e-05  Score=63.42  Aligned_cols=204  Identities=11%  Similarity=0.033  Sum_probs=137.8

Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 037499           23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL  102 (262)
Q Consensus        23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  102 (262)
                      +++..+|+++.           ...+.+...|...+..+.+.|+++.|..++++....   |.+...+..    |+....
T Consensus       196 ~Rv~~~ye~al-----------~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e  257 (493)
T 2uy1_A          196 SRMHFIHNYIL-----------DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMD  257 (493)
T ss_dssp             HHHHHHHHHHH-----------HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTT
T ss_pred             HHHHHHHHHHH-----------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcc
Confidence            45667777763           344557889999999999999999999999999974   444333332    222211


Q ss_pred             HHHHHHHHHHHhhcC------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499          103 LEHALQVFDEMSSFN------------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus       103 ~~~a~~~~~~~~~~~------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      .++.   ++.+.+.-            ......+|...+..+.+.+..+.|..+|+.. .....+...|...+..-...+
T Consensus       258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~  333 (493)
T 2uy1_A          258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT  333 (493)
T ss_dssp             CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH
T ss_pred             hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC
Confidence            1111   22222110            0112345777777777788899999999999 332244455543333333333


Q ss_pred             -ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 037499          171 -RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF  249 (262)
Q Consensus       171 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  249 (262)
                       +.+.|..+|+...+.- +-+...+...+......|+.+.|..+|+++.      .....|...+..=...|+.+.+..+
T Consensus       334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v  406 (493)
T 2uy1_A          334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFREL  406 (493)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence             6999999999998863 2234456667777788999999999998872      2567788888777788999999998


Q ss_pred             HHHHHH
Q 037499          250 KEEMVR  255 (262)
Q Consensus       250 ~~~m~~  255 (262)
                      +++..+
T Consensus       407 ~~~~~~  412 (493)
T 2uy1_A          407 VDQKMD  412 (493)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.43  E-value=7.5e-06  Score=66.72  Aligned_cols=125  Identities=5%  Similarity=-0.138  Sum_probs=84.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhc-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--C-ChhHHH
Q 037499           96 FYGRARLLEHALQVFDEMSSF-----N--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--P-DACSYN  160 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~-~~~~~~  160 (262)
                      .+...|++++|+.++++..+.     |  .+....+++.|..+|...|++++|+.++++....     |+  | ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345678888888888776542     1  1112356788888888888888888888776432     22  2 245678


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHH-----CCC-CCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          161 ILMHGCVVSRRLEDAWKVFDEMLK-----RRL-QPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       161 ~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .+...|...|++++|..++++..+     .|. .|+ ..+...+-.++...+.+++|+.++.++++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888877654     232 222 234455556677778888888888887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.43  E-value=4.4e-06  Score=53.85  Aligned_cols=80  Identities=9%  Similarity=0.001  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       105 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      .|++.|++..+.. +.+...+..+..+|...|++++|+..|++.....+.+...|..+..+|...|++++|...|++..+
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566677766654 456677777777888888888888888887777666677777778888888888888888777765


Q ss_pred             C
Q 037499          185 R  185 (262)
Q Consensus       185 ~  185 (262)
                      .
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.43  E-value=2.5e-06  Score=69.47  Aligned_cols=125  Identities=9%  Similarity=-0.034  Sum_probs=96.3

Q ss_pred             HHhcCChhHHHHHHHHHHhcC--CCC----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----C--CCCChhhHHH
Q 037499           61 LGRAKMFDEVQQILHQLKHDT--RVV----PEEIIFCNVISFYGRARLLEHALQVFDEMSSF-----N--VQRTVKSFNT  127 (262)
Q Consensus        61 ~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~  127 (262)
                      +...|++++|+.++++..+..  -+.    ....+++.|..+|...|++++|+.++++..+.     |  .+....+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            557899999999998886531  122    23568899999999999999999999887642     2  1123467899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc-----CC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          128 LLNAMLTCGKIDRMTDLFQIMEKY-----VS--PD-ACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       128 ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      |...|...|++++|+.++++....     |+  |+ ..+.+.+..++...+.+++|+.+|+++++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999877542     33  32 345567778888899999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.40  E-value=1.7e-05  Score=66.09  Aligned_cols=174  Identities=6%  Similarity=-0.117  Sum_probs=141.4

Q ss_pred             cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCccHH
Q 037499           19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM----------FDEVQQILHQLKHDTRVVPEEI   88 (262)
Q Consensus        19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~   88 (262)
                      ....++|++.++.+..           -.+-+..+|+.--.++...++          ++++++.++.+.+..  +-+..
T Consensus        42 ~~~~eeal~~~~~~l~-----------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~  108 (567)
T 1dce_A           42 GELDESVLELTSQILG-----------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYG  108 (567)
T ss_dssp             TCCSHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHH
T ss_pred             CCCCHHHHHHHHHHHH-----------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHH
Confidence            3444578999988833           445577889888888888877          999999999999864  66778


Q ss_pred             HHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499           89 IFCNVISFYGRAR--LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus        89 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      +|+.-.-++.+.+  +++++++.++++.+.. +.+..+|+.-..++.+.| .++++++.+.++.+..+.|...|+.....
T Consensus       109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l  187 (567)
T 1dce_A          109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (567)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence            8888888888889  7799999999999987 778899999888888999 89999999999999888999999988877


Q ss_pred             HHhc--------------CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499          166 CVVS--------------RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV  207 (262)
Q Consensus       166 ~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  207 (262)
                      +.+.              +.++++.+.+++...... -|...|.-+-..+.+.++.
T Consensus       188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCC
T ss_pred             HHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCc
Confidence            7663              457889999999888643 3667777776666666653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.40  E-value=3.5e-05  Score=51.51  Aligned_cols=110  Identities=13%  Similarity=0.006  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHH
Q 037499          101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV----SRRLEDAW  176 (262)
Q Consensus       101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~  176 (262)
                      +++++|+++|++..+.| .+...    +...|...+..++|++.|++..+.  .+...+..+...|..    .+++++|.
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            45677777777777666 33322    555565666666677777766654  455566666666666    66777777


Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 037499          177 KVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRV  220 (262)
Q Consensus       177 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~  220 (262)
                      ..|++..+.|   +...+..|...|..    .+++++|.++|++..+.
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            7777776654   44555556666666    56777777777666553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.38  E-value=1.7e-06  Score=58.73  Aligned_cols=56  Identities=11%  Similarity=0.049  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-----------ChhHHHHHHHHHHHCCCCCchHHHH
Q 037499          138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR-----------RLEDAWKVFDEMLKRRLQPTLVTFG  195 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~  195 (262)
                      +++|+..|++..+..+.+...|..+..+|...|           ++++|...|++..+.  .|+...|.
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~  128 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL  128 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence            346666666666655555556666666665543           556666666665553  34444333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.36  E-value=5.2e-06  Score=52.16  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                      ..+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|...|++++|++.|++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444444444444444444444444332 223334444444444444444444444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.35  E-value=8.2e-07  Score=56.72  Aligned_cols=93  Identities=12%  Similarity=0.013  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC------hh
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT------VK  123 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~  123 (262)
                      +...|..+...+...|++++|+..|++..+..  +.+...+..+..++.+.|++++|++.|++..+.. +.+      ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence            56788899999999999999999999999853  5678889999999999999999999999998764 333      44


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHH
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLF  145 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~  145 (262)
                      .+..+..++...|+.+.|+..+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHH
Confidence            5555556666666555554433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.31  E-value=1.6e-05  Score=48.51  Aligned_cols=83  Identities=10%  Similarity=0.057  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      +...|..+...+...|++++|+..+++..+..  +.+...+..+..++.+.|++++|.+.|++..+.. +.+..++..+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~   84 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            56788889999999999999999999998853  5567889999999999999999999999998875 55667777777


Q ss_pred             HHHHhc
Q 037499          130 NAMLTC  135 (262)
Q Consensus       130 ~~~~~~  135 (262)
                      .++...
T Consensus        85 ~~~~~~   90 (91)
T 1na3_A           85 NAKQKQ   90 (91)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.30  E-value=5.9e-05  Score=50.38  Aligned_cols=111  Identities=10%  Similarity=-0.025  Sum_probs=72.8

Q ss_pred             CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHH
Q 037499           65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDR  140 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~  140 (262)
                      +++++|++.|++..+. | .+...    |...|...+.+++|+++|++..+.|   +...+..|...|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            4567777777777664 3 23332    5566666666777777777777654   44566666666666    667777


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 037499          141 MTDLFQIMEKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRR  186 (262)
Q Consensus       141 a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~  186 (262)
                      |++.|++..+.  .++..+..+...|..    .+++++|...|++..+.|
T Consensus        80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77777776654  445566666667766    677777777777777665

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.25  E-value=4.3e-05  Score=62.58  Aligned_cols=191  Identities=12%  Similarity=-0.027  Sum_probs=129.9

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-   81 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-   81 (262)
                      |..+..|...+..+.+.|++++|.++|++...           . +.+...|..    |+...+.++.   ++.+.+.. 
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-----------~-P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~  270 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-----------M-SDGMFLSLY----YGLVMDEEAV---YGDLKRKYS  270 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------H-CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------C-CCcHHHHHH----HHhhcchhHH---HHHHHHHHH
Confidence            44556678888888999999999999999843           3 334334432    2222222222   22222210 


Q ss_pred             -------CC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 037499           82 -------RV---VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEK  150 (262)
Q Consensus        82 -------~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~  150 (262)
                             +.   .....+|...+....+.++.+.|.++|++. +.. ..+...|......-...+ +.+.|..+|+...+
T Consensus       271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~  348 (493)
T 2uy1_A          271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL  348 (493)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence                   00   112345777777777888999999999999 321 223444543333323333 69999999999988


Q ss_pred             cCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      ..+.++..|...+....+.|+.+.|..+|+++.     .....|...+..-...|+.+.+.+++++..+
T Consensus       349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            765556677778888889999999999999973     2577888888777788999999999988875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.24  E-value=1.2e-05  Score=50.45  Aligned_cols=66  Identities=15%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      +.+...+..+..+|...|++++|+..|++..+..+.+...|..+..+|...|++++|...|++..+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345667777777888888888888888888777776777777888888888888888888777665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.23  E-value=1e-05  Score=54.90  Aligned_cols=113  Identities=12%  Similarity=-0.002  Sum_probs=81.7

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL----------EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      +.+.+++|++.++...+..+.+...|..+..++...+++          ++|+..|++..+.... +..+|..+..+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence            445677777777777777777777777777777776654          5999999999987433 56788889999987


Q ss_pred             hC-----------CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          204 EL-----------RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       204 ~g-----------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      .|           ++++|++.|++..+.   .|+...|...+...      ++|-++.-.+-..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al~~~------~ka~el~~~~~~~  147 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT------AKAPQLHAEAYKQ  147 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHH------HhCHhccCccccc
Confidence            74           899999999999865   78877776555443      3445544444433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.12  E-value=0.00059  Score=59.25  Aligned_cols=156  Identities=12%  Similarity=0.061  Sum_probs=106.2

Q ss_pred             HHHHhhcCChHHHHH-hhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499           13 ASLLRLQKDPKLALQ-LFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC   91 (262)
Q Consensus        13 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   91 (262)
                      .......+++++|.+ ++..+.                +......++..+.+.|..+.|+++.+.-        ...   
T Consensus       606 ~~~~~~~~~~~~a~~~~l~~i~----------------~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~---  658 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVLPNVE----------------GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQK---  658 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTGGGCC----------------CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHH---
T ss_pred             HhHHHHhCCHHHHHHHHHhcCC----------------chHHHHHHHHHHHhCCChHHheecCCCc--------chh---
Confidence            344456889999988 776551                1333477888888899999988765321        111   


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR  171 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  171 (262)
                        .......|+++.|+++.+.+      .+...|..+...+.+.|+++.|.++|.++..        |..+...|...|+
T Consensus       659 --f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~  722 (814)
T 3mkq_A          659 --FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNN  722 (814)
T ss_dssp             --HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTC
T ss_pred             --eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCC
Confidence              33456789999999886443      3567899999999999999999999998865        4555666666777


Q ss_pred             hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      .+...++.+.....|      -++....+|.+.|++++|++++.++
T Consensus       723 ~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          723 KEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            777666666555543      1233344455566777776666554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.91  E-value=0.0015  Score=42.58  Aligned_cols=140  Identities=12%  Similarity=0.111  Sum_probs=87.4

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK  177 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  177 (262)
                      .-.|.+++..++..+..+.   .+..-||-++--....-+-+-..++++.+-+.  .|..          .+|++.....
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki--FDis----------~C~NlKrVi~   82 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--FDLD----------KCQNLKSVVE   82 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--SCGG----------GCSCTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh--cCcH----------hhhcHHHHHH
Confidence            3457777777777777653   34445555555555555555555555555432  3322          3444444444


Q ss_pred             HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499          178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK  257 (262)
Q Consensus       178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  257 (262)
                      .+-.+-.     +...+...+.....+|+-++-.+++..+..  ..+|++.....+..+|.+.|+..+|.+++.+..++|
T Consensus        83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            4433221     445566677777788888888888777543  456777777788888888888888888888888877


Q ss_pred             CC
Q 037499          258 IE  259 (262)
Q Consensus       258 ~~  259 (262)
                      ++
T Consensus       156 ~k  157 (172)
T 1wy6_A          156 EK  157 (172)
T ss_dssp             CH
T ss_pred             hH
Confidence            63

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.85  E-value=0.0036  Score=48.64  Aligned_cols=142  Identities=8%  Similarity=0.035  Sum_probs=91.0

Q ss_pred             CccHHHHHHHHHHH--HhcC---CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh---cC-----CHHHHHHHHHHHH-
Q 037499           84 VPEEIIFCNVISFY--GRAR---LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT---CG-----KIDRMTDLFQIME-  149 (262)
Q Consensus        84 ~~~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g-----~~~~a~~~~~~~~-  149 (262)
                      +.+...|...+++.  ...+   +..+|..+|++..+.. |-....|..+..+|..   .+     ........++... 
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            34445555555443  3333   3478888888888764 3334555544444431   11     1111111222211 


Q ss_pred             -hcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499          150 -KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ  228 (262)
Q Consensus       150 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~  228 (262)
                       ..++.++.+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++....   .|...
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~  344 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGAN  344 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcC
Confidence             2234778888888777777899999999999999875  67777777788888899999999999988764   67776


Q ss_pred             HHH
Q 037499          229 VFA  231 (262)
Q Consensus       229 ~~~  231 (262)
                      +|.
T Consensus       345 t~~  347 (372)
T 3ly7_A          345 TLY  347 (372)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.82  E-value=0.00039  Score=42.99  Aligned_cols=56  Identities=11%  Similarity=0.086  Sum_probs=26.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499           59 TKLGRAKMFDEVQQILHQLKHDTRVVPEEI-IFCNVISFYGRARLLEHALQVFDEMSSF  116 (262)
Q Consensus        59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  116 (262)
                      ..+.+.|++++|+..+++..+..  +.+.. .+..+..+|...|++++|++.|++..+.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34444455555555555544431  22333 4444444444555555555555544443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.76  E-value=0.0018  Score=50.34  Aligned_cols=135  Identities=10%  Similarity=-0.007  Sum_probs=96.8

Q ss_pred             CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc---C-C----hhHHHHHHHHHHHC
Q 037499          119 QRTVKSFNTLLNAML--TCG---KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS---R-R----LEDAWKVFDEMLKR  185 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~----~~~a~~~~~~m~~~  185 (262)
                      +.+..+|...+.+..  ..+   ...+|..+|++..+..|.....|..+..+|...   + .    .......++.....
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            667888888887654  333   458999999999998887777776655555311   1 1    11111122221111


Q ss_pred             -CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          186 -RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       186 -~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                       ..+.+..+|..+...+...|++++|...++++...   .|+...|..+...+.-.|++++|.+.+++....
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             22456778888877777789999999999999986   488888888888999999999999999988763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.70  E-value=0.00046  Score=42.68  Aligned_cols=57  Identities=16%  Similarity=0.108  Sum_probs=25.7

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVK-SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      .+.+.|++++|++.|++..+.. +.+.. .+..+..+|...|++++|++.|++.....+
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3444444444444444444432 22333 444444444444444444444444444433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.67  E-value=0.00038  Score=55.87  Aligned_cols=61  Identities=10%  Similarity=0.005  Sum_probs=31.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--P-DACSYNILMHGCVVSRRLEDAWKVFDEML  183 (262)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  183 (262)
                      .+++.+..+|...|++++|+.++++....     |+  | ...+++.+...|...|++++|..++++..
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34555555555555555555555544321     11  1 23345555666666666666666555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.65  E-value=0.00024  Score=56.95  Aligned_cols=84  Identities=8%  Similarity=-0.073  Sum_probs=39.3

Q ss_pred             CChhHHHHHHHHHHhcC--CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----C-CCC-ChhhHHHHHHH
Q 037499           65 KMFDEVQQILHQLKHDT--RVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSF-----N-VQR-TVKSFNTLLNA  131 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~ll~~  131 (262)
                      |++++|+.++++..+..  -+.|    ...+++.|..+|...|++++|+.++++..+.     | -.| ...+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            45555665555544310  1111    1344555555555556665555555554321     1 011 12335555555


Q ss_pred             HHhcCCHHHHHHHHHHH
Q 037499          132 MLTCGKIDRMTDLFQIM  148 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~  148 (262)
                      |...|++++|+.++++.
T Consensus       392 ~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          392 YMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHH
Confidence            55555555555555444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.63  E-value=0.00029  Score=56.48  Aligned_cols=84  Identities=10%  Similarity=-0.034  Sum_probs=49.3

Q ss_pred             CCHHHHHHHHHHHHhc-----CC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCc-hHHHHHHHHH
Q 037499          136 GKIDRMTDLFQIMEKY-----VS--P-DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----R-LQPT-LVTFGTLIYG  200 (262)
Q Consensus       136 g~~~~a~~~~~~~~~~-----~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~li~~  200 (262)
                      |++++|+.++++..+.     ++  | ...+++.+..+|...|++++|..++++..+.     | -.|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4566666666554332     11  1 2345666777777777777777777665531     2 1222 3456667777


Q ss_pred             HHhhCCHHHHHHHHHHHHH
Q 037499          201 LCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       201 ~~~~g~~~~a~~~~~~~~~  219 (262)
                      |...|++++|+.++++..+
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            7777777777777766544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.63  E-value=0.0013  Score=40.39  Aligned_cols=15  Identities=7%  Similarity=-0.082  Sum_probs=5.4

Q ss_pred             HhcCCHHHHHHHHHH
Q 037499           98 GRARLLEHALQVFDE  112 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~  112 (262)
                      .+.|++++|+..|++
T Consensus        54 ~~~g~y~~Ai~~w~~   68 (93)
T 3bee_A           54 FISFRFQEAIDTWVL   68 (93)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            333333333333333

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.58  E-value=0.00066  Score=54.48  Aligned_cols=92  Identities=12%  Similarity=0.014  Sum_probs=72.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC-----C---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCc-hHH
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYV-----S---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----R-LQPT-LVT  193 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~  193 (262)
                      +..+.+.|++++|+.++++..+..     +   ....+++.+...|...|++++|+.++++....     | ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            455667899999999999887542     2   22467899999999999999999999987742     2 2333 457


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ++.|...|...|++++|+.++++..+-
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            888999999999999999999887543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.55  E-value=0.0019  Score=40.57  Aligned_cols=63  Identities=11%  Similarity=-0.025  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFN------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  151 (262)
                      .+..+...+.+.+++..|..+|+...+.-      -.+...++..+..++.+.|++++|+..+++....
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34444444444555555555444443210      0122333444444444444444444444444433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.45  E-value=0.0028  Score=38.88  Aligned_cols=46  Identities=13%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      ++|..++++.....+.+......+...+.+.|++++|...|+++.+
T Consensus        26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4444444444444444444444444444444444444444444444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.41  E-value=0.0035  Score=39.32  Aligned_cols=75  Identities=5%  Similarity=-0.048  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-----RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK  123 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  123 (262)
                      .+..-+..+...+.+.+++..|...|+...+..     .-.+...++..+..++.+.|+++.|+..+++..+.. |.+..
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~   81 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQR   81 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHH
Confidence            366777889999999999999999999987642     113467789999999999999999999999998764 33433


Q ss_pred             h
Q 037499          124 S  124 (262)
Q Consensus       124 ~  124 (262)
                      +
T Consensus        82 ~   82 (104)
T 2v5f_A           82 A   82 (104)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.014  Score=40.22  Aligned_cols=101  Identities=14%  Similarity=0.174  Sum_probs=58.2

Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH
Q 037499           97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW  176 (262)
Q Consensus        97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  176 (262)
                      ..+.|+++.|.++.+++      .+...|..|.......|+++-|.+.|.+...        +..+.-.|.-.|+.++..
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence            34566666666665544      2345666666666666666666666666554        455555555566666555


Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499          177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM  217 (262)
Q Consensus       177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  217 (262)
                      ++-+.....|      -++.....+...|+++++.++|.+.
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            5555444433      2333444455567777776666443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.38  E-value=0.0053  Score=41.22  Aligned_cols=79  Identities=13%  Similarity=0.018  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChhHHHHHH
Q 037499          105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG---KIDRMTDLFQIMEKYVSP--DACSYNILMHGCVVSRRLEDAWKVF  179 (262)
Q Consensus       105 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~  179 (262)
                      .+.+-|.+..+.| +++..+...+..++++++   +.++++.+|+...+...|  ....+-.+.-+|.+.|++++|.+.+
T Consensus        16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            3344444444444 345555555555555555   344555555555544311  2334444444555555555555555


Q ss_pred             HHHHH
Q 037499          180 DEMLK  184 (262)
Q Consensus       180 ~~m~~  184 (262)
                      +.+.+
T Consensus        95 ~~lL~   99 (152)
T 1pc2_A           95 RGLLQ   99 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55555

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.38  E-value=0.011  Score=44.20  Aligned_cols=84  Identities=12%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhc-CCh
Q 037499          103 LEHALQVFDEMSSFNVQRT---VKSFNTLLNAMLTC-----GKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVS-RRL  172 (262)
Q Consensus       103 ~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-g~~  172 (262)
                      ...|...+++..+..  |+   -..|..+...|.+.     |+.++|.+.|++..+..+ .+..++......+++. |+.
T Consensus       179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            345556666666543  33   44666666666663     677777777777766665 3466666666666663 667


Q ss_pred             hHHHHHHHHHHHCCCC
Q 037499          173 EDAWKVFDEMLKRRLQ  188 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~  188 (262)
                      +.+.+.+++.......
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            7777777777665544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.017  Score=39.81  Aligned_cols=100  Identities=12%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH
Q 037499           60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID  139 (262)
Q Consensus        60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  139 (262)
                      ...+.|+++.|.++.+.+       .+...|..|.....+.|+++-|.+.|.+...         +..+.-.|.-.|+.+
T Consensus        14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            344455555555554443       1344455555555555555555555555442         233334444445544


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 037499          140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD  180 (262)
Q Consensus       140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  180 (262)
                      +..++-+.....+.     ++.....+.-.|+++++.++|.
T Consensus        78 ~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           78 KLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHH
Confidence            44443333332211     2333334444555555555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.26  E-value=0.02  Score=49.65  Aligned_cols=131  Identities=11%  Similarity=0.095  Sum_probs=88.0

Q ss_pred             HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499           10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII   89 (262)
Q Consensus        10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   89 (262)
                      ..++..+.+.|..++|+++.+.-                 .     .-.......|+++.|.++.+.+       .+...
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~-----------------~-----~~f~~~l~~~~~~~A~~~~~~~-------~~~~~  683 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQ-----------------D-----QKFELALKVGQLTLARDLLTDE-------SAEMK  683 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCH-----------------H-----HHHHHHHHHTCHHHHHHHHTTC-------CCHHH
T ss_pred             HHHHHHHHhCCChHHheecCCCc-----------------c-----hheehhhhcCCHHHHHHHHHhh-------CcHhH
Confidence            56777888899999999877543                 1     1134567789999999986433       45678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS  169 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  169 (262)
                      |..+...+.+.++++.|.+.|.++..         |..+...+...|+.+...++-+.....+.     ++....+|.+.
T Consensus       684 W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-----~~~A~~~~~~~  749 (814)
T 3mkq_A          684 WRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-----FNLAFNAYWIA  749 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----hHHHHHHHHHc
Confidence            99999999999999999999998764         34455555556666665555555444322     23333445556


Q ss_pred             CChhHHHHHHHHHH
Q 037499          170 RRLEDAWKVFDEML  183 (262)
Q Consensus       170 g~~~~a~~~~~~m~  183 (262)
                      |++++|.+++.++.
T Consensus       750 g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          750 GDIQGAKDLLIKSQ  763 (814)
T ss_dssp             TCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHcC
Confidence            66666666655543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.23  E-value=0.0084  Score=40.25  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--chHHHHHHHHHHHhhCCHHHHH
Q 037499          137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR---RLEDAWKVFDEMLKRRLQP--TLVTFGTLIYGLCLELRVDEAL  211 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~  211 (262)
                      ....+.+.|.+....++++..+...+.-++++.+   +.+++..+|+...+.+ .|  +...+-.+.-+|.+.|++++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3455667777766667788888888889999988   6669999999988874 23  3445555666889999999999


Q ss_pred             HHHHHHHHhcCCCCC
Q 037499          212 KLKEDMMRVYNVKPD  226 (262)
Q Consensus       212 ~~~~~~~~~~~~~p~  226 (262)
                      +.++.+.+.   .|+
T Consensus        92 ~y~~~lL~i---eP~  103 (152)
T 1pc2_A           92 KYVRGLLQT---EPQ  103 (152)
T ss_dssp             HHHHHHHHH---CTT
T ss_pred             HHHHHHHhc---CCC
Confidence            999999865   664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.08  E-value=0.0096  Score=44.57  Aligned_cols=108  Identities=11%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhcCC--CChhHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-CCHHH
Q 037499          138 IDRMTDLFQIMEKYVS--PDACSYNILMHGCVV-----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE-LRVDE  209 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~  209 (262)
                      ...|...+++..+..+  .+...|..+...|.+     .|+.++|.+.|++..+.+..-+..++......+++. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            5677888888888777  467899999999999     499999999999999964332477888888888885 99999


Q ss_pred             HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499          210 ALKLKEDMMRVYNVK--PDAQVFASLIKGLCAVGELSLALGFKEEMV  254 (262)
Q Consensus       210 a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  254 (262)
                      +.+.+++.... ...  |+....+.+-        -.+|..++++..
T Consensus       259 a~~~L~kAL~a-~p~~~P~~~lan~~~--------q~eA~~LL~~~~  296 (301)
T 3u64_A          259 FDEALDRALAI-DPESVPHNKLLVILS--------QKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHHHHHC-CGGGCSSCHHHHHHH--------HHHHHHHHHTHH
T ss_pred             HHHHHHHHHcC-CCCCCCChhHHHHHH--------HHHHHHHHHHhH
Confidence            99999999875 333  5544444332        345556555543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.95  E-value=0.039  Score=36.77  Aligned_cols=36  Identities=14%  Similarity=0.152  Sum_probs=25.3

Q ss_pred             CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCCcc
Q 037499           49 YNLLHYDLIITKLGRAKMF------DEVQQILHQLKHDTRVVPE   86 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~   86 (262)
                      .|..+|-..+...-+.|+.      ++.+++|++....  ++|+
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~   52 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPD   52 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGG
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCcc
Confidence            3677777777777777777      7777777777663  5665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.80  E-value=0.034  Score=37.06  Aligned_cols=103  Identities=6%  Similarity=0.025  Sum_probs=51.3

Q ss_pred             ccHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHHHhc
Q 037499           85 PEEIIFCNVISFYGRARLL------EHALQVFDEMSSFNVQRTVK-SFNTLLNA------MLTCGKIDRMTDLFQIMEKY  151 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~------~~~~g~~~~a~~~~~~~~~~  151 (262)
                      -|..+|-..+....+.|++      ++..++|++.... ++|+.. .|...+..      +...++.++|.++|+.+...
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3455566666666666666      6666777766653 344321 11111111      11234555555555555443


Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037499          152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ  188 (262)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  188 (262)
                      ...-...|......-.+.|++.+|.+++.+....+..
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            2211445555555555555555555555555554433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.63  E-value=0.023  Score=36.75  Aligned_cols=19  Identities=21%  Similarity=0.233  Sum_probs=8.2

Q ss_pred             HHHhhCCHHHHHHHHHHHH
Q 037499          200 GLCLELRVDEALKLKEDMM  218 (262)
Q Consensus       200 ~~~~~g~~~~a~~~~~~~~  218 (262)
                      ++.+.|++++|.+.++.+.
T Consensus        83 g~yklg~Y~~A~~~~~~lL  101 (126)
T 1nzn_A           83 GNYRLKEYEKALKYVRGLL  101 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH
Confidence            3444444444444444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.61  E-value=0.048  Score=35.23  Aligned_cols=90  Identities=12%  Similarity=-0.047  Sum_probs=64.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC--ChhHHHHHHHHHHhc
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR---MTDLFQIMEKYVSP--DACSYNILMHGCVVS  169 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  169 (262)
                      ...........+.+-|.+....| .++..+-..+..++.++.....   ++.+++.+...+.|  .....-.+.-++.+.
T Consensus         9 ~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl   87 (126)
T 1nzn_A            9 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   87 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             hccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence            33344455666777777666666 4777777778888888877665   88888887776532  344555677788899


Q ss_pred             CChhHHHHHHHHHHHC
Q 037499          170 RRLEDAWKVFDEMLKR  185 (262)
Q Consensus       170 g~~~~a~~~~~~m~~~  185 (262)
                      |++++|.+.++.+.+.
T Consensus        88 g~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQT  103 (126)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            9999999999998885

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.44  E-value=1.4e-05  Score=63.63  Aligned_cols=203  Identities=11%  Similarity=0.079  Sum_probs=133.5

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV   83 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   83 (262)
                      ..|..|..|+.+....+.+.+|++.|-+..                |+..|..++..+.+.|.+++-++.+...++.   
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---  112 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD----------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK---  112 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS----------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhCC----------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence            467889999999999999999999887762                5667888999999999999999999887764   


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-----------  152 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----------  152 (262)
                      .-++.+=+.|+-+|++.++..+..+++       ..||..-...+.+-|...|.++.|.-+|..+..-.           
T Consensus       113 ~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~  185 (624)
T 3lvg_A          113 ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE  185 (624)
T ss_dssp             CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred             hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            233444568899999999865433322       24666666677777777777777776665543211           


Q ss_pred             ---------C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 037499          153 ---------S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN  222 (262)
Q Consensus       153 ---------~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  222 (262)
                               . .++.||-.+-.+|...+.+.-|.-.--.+.-.     ..-...++..|-..|.+++-+.+++.-..  -
T Consensus       186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg--l  258 (624)
T 3lvg_A          186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG--L  258 (624)
T ss_dssp             GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT--S
T ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC--C
Confidence                     1 57788888888888777776665554333321     11122344455555666665555555431  1


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 037499          223 VKPDAQVFASLIKGLCA  239 (262)
Q Consensus       223 ~~p~~~~~~~l~~~~~~  239 (262)
                      -.....+|+-|.-.|++
T Consensus       259 ErAHmGmFTELaILYsK  275 (624)
T 3lvg_A          259 ERAHMGMFTELAILYSK  275 (624)
T ss_dssp             TTCCHHHHHHHHHHHHS
T ss_pred             CchhHHHHHHHHHHHHh
Confidence            12344445544444444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.068  Score=45.85  Aligned_cols=126  Identities=14%  Similarity=0.042  Sum_probs=77.2

Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHhcCCCChhHH-HHHHHHHHhcCCh-hHHHHHHHHHHHC------CCCC-ch----
Q 037499          126 NTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSY-NILMHGCVVSRRL-EDAWKVFDEMLKR------RLQP-TL----  191 (262)
Q Consensus       126 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~-~~a~~~~~~m~~~------~~~~-~~----  191 (262)
                      ..++..+...|+ .+.|..+|+++....+.....+ ..++..+.+.++- -+|.+++.+..+.      ...+ +.    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            445555555666 5779999998887655333333 3334444343322 2355555444321      1111 11    


Q ss_pred             ------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          192 ------VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       192 ------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                            .....=...+...|+++.|+++-++....  .+-+..+|..|..+|...|+++.|+-.++-+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                  01111134456789999999999998863  2335789999999999999999999888776

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.16  E-value=0.14  Score=33.55  Aligned_cols=138  Identities=13%  Similarity=0.067  Sum_probs=74.4

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 037499           61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR  140 (262)
Q Consensus        61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  140 (262)
                      +.-.|.+++..++..+.....    +..-+|-+|--....-+-+-..++++.+-+.   -|.          ..+|+...
T Consensus        17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHH
Confidence            344699999999999988754    3333444444444455666666666655432   121          12233333


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       141 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ....+-.+.    .+...+...+......|..++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+..+.
T Consensus        80 Vi~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           80 VVECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            333322221    23344455555556666666666666654332 3455555556666666666666666666666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.078  Score=45.50  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCccHHH-H-HHHHHHHHhcCC-HHHHHHHHHHHhhc------CCCCC-
Q 037499           53 HYDLIITKLGRAKM-FDEVQQILHQLKHDTRVVPEEII-F-CNVISFYGRARL-LEHALQVFDEMSSF------NVQRT-  121 (262)
Q Consensus        53 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~-  121 (262)
                      .-..++..+...++ ++.|+.+|+++.+..   |...+ + ..++..+...++ --+|.+++.+..+.      ..++. 
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~---p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~  326 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD---PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD  326 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence            33556666666776 588999999998863   43332 2 334444434332 23556555554321      11111 


Q ss_pred             hh----------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          122 VK----------SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM  182 (262)
Q Consensus       122 ~~----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  182 (262)
                      ..          ....=..-+...|+++-|+++-++.....|.+-.+|..|..+|...|+++.|+-.++.+
T Consensus       327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            10          11111334667899999999999999888888899999999999999999999999887

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.08  E-value=0.8  Score=41.69  Aligned_cols=190  Identities=12%  Similarity=0.070  Sum_probs=120.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---------------
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR---------------  120 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------  120 (262)
                      .++..+...+.++.+.++....      +.++.....+..+|...|++++|.+.|.+... |+..               
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence            4556677778887777655433      23444556678899999999999999987531 1100               


Q ss_pred             --------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037499          121 --------TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL  187 (262)
Q Consensus       121 --------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  187 (262)
                              -..-|.-++..+.+.+.++.+.++-....+... .+    ...|..+..++...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                    112366778888889999998888776655433 22    23688999999999999999999988876544


Q ss_pred             CCchHHHHHHHHHHHhhCCH------------HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHH
Q 037499          188 QPTLVTFGTLIYGLCLELRV------------DEALKLKEDMMRVY-NVKPDAQVFASLIKGLCAVGELSLALGF-KEEM  253 (262)
Q Consensus       188 ~~~~~~~~~li~~~~~~g~~------------~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m  253 (262)
                      +  ...+..|+...|..|..            ++..+++....+.. .+...+.-|..|-.-+...|++.+|-++ |+..
T Consensus       970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B          970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp             C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence            3  45677777777766554            34444443322110 1111112344444445667777766554 4444


Q ss_pred             H
Q 037499          254 V  254 (262)
Q Consensus       254 ~  254 (262)
                      .
T Consensus      1048 ~ 1048 (1139)
T 4fhn_B         1048 S 1048 (1139)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.01  E-value=0.4  Score=42.20  Aligned_cols=193  Identities=12%  Similarity=0.003  Sum_probs=99.5

Q ss_pred             HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-C-----CccHHH
Q 037499           16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-V-----VPEEII   89 (262)
Q Consensus        16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~   89 (262)
                      ....|+.++++.++........        ...+....-..+.-+....|..++++.++........ +     .+....
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~--------s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~  455 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSR--------ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH  455 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSC--------CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccC--------CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence            4568888999999988744210        1112233333444455566666678887777665321 0     011111


Q ss_pred             HHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           90 FCNVISFYGRARL-LEHALQVFDEMSSFNVQRTVK--SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        90 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      -..+.-++.-.|. -+++.+.+..+.... .....  +--+|...+.-.|+-+....++..+.+....+..-...+.-++
T Consensus       456 gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl  534 (963)
T 4ady_A          456 GASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL  534 (963)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence            1222222222232 245555555555422 11111  1223334455667777777777766554322233333444455


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHH---HHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFG---TLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                      .-.|+.+.+..+++.+.... .| ..-|.   ++.-+|+..|+.....+++..+..
T Consensus       535 l~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~  588 (963)
T 4ady_A          535 INYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS  588 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             hhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence            57788888888888777641 22 22232   233456677787666667777654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.91  E-value=0.13  Score=31.60  Aligned_cols=63  Identities=11%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      +.-+..+-++.+......|++.+..+.+++|.+.+++..|+++|+.+..+.+  +...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence            3445666677777777788888888888888888888888888888766433  33445666653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.84  E-value=0.067  Score=42.28  Aligned_cols=69  Identities=12%  Similarity=0.095  Sum_probs=36.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hcCCCCCHHH
Q 037499          160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----VYNVKPDAQV  229 (262)
Q Consensus       160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~  229 (262)
                      ..++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+++.+    ..|+.|+..+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            334455555566666555555555432 23455555566666666666666555555432    2355555544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.76  E-value=0.32  Score=44.27  Aligned_cols=178  Identities=14%  Similarity=0.118  Sum_probs=107.7

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCC------------CCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQP------------LKPFRYNLLHYDLIITKLGRAKMFDEVQ   71 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~   71 (262)
                      .++.+-..++.++...|++++|.+.|++....-.......            ......-..-|..++..+.+.+.++.++
T Consensus       840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi  919 (1139)
T 4fhn_B          840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL  919 (1139)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred             CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence            3444557788999999999999999998733211000000            0000112234677888888999999999


Q ss_pred             HHHHHHHhcCCCC-cc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-----------
Q 037499           72 QILHQLKHDTRVV-PE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-----------  137 (262)
Q Consensus        72 ~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----------  137 (262)
                      ++-+...+..+-. ++  ...|..+.+.+...|++++|...+-.+.....  -......|+..++..|.           
T Consensus       920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~g  997 (1139)
T 4fhn_B          920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPT  997 (1139)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTS
T ss_pred             HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCcc
Confidence            8887776643211 11  22578889999999999999999988876532  34455666666665544           


Q ss_pred             -HHHHHHHHHHH-Hhc-CC-CChhHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 037499          138 -IDRMTDLFQIM-EKY-VS-PDACSYNILMHGCVVSRRLEDAWK-VFDEML  183 (262)
Q Consensus       138 -~~~a~~~~~~~-~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~  183 (262)
                       .+++.+++..- +.. .+ ..+.-|..|-..+...|++.+|-. +|+.+.
T Consensus       998 l~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B          998 LRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence             44555555432 222 11 222345555566667777765443 444443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.72  E-value=0.56  Score=36.98  Aligned_cols=169  Identities=10%  Similarity=-0.008  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhH----HHHHHHHHHhcCCC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDE----VQQILHQLKHDTRV   83 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~----a~~~~~~~~~~~~~   83 (262)
                      ...|+..|.+.|+.++..+++...++--.      .-+..-....-..++..+.... ..+.    ..+.+++...+...
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~   95 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLS------SISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT   95 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGG------GSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999998854311      0111123445666777776643 3333    44444444443211


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC
Q 037499           84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-----TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV---SPD  155 (262)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~  155 (262)
                      -....+=..++..|...|++.+|.+++.++.+.--..     -..+|..-+..|...+++.++...+.......   .++
T Consensus        96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~  175 (394)
T 3txn_A           96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP  175 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence            1112233468899999999999999998887531111     13456666788899999999999998775432   233


Q ss_pred             hhHHH----HHHHHHH-hcCChhHHHHHHHHHH
Q 037499          156 ACSYN----ILMHGCV-VSRRLEDAWKVFDEML  183 (262)
Q Consensus       156 ~~~~~----~l~~~~~-~~g~~~~a~~~~~~m~  183 (262)
                      +....    .-...+. ..++|..|...|-+..
T Consensus       176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            33332    2234455 7899999988887764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.51  E-value=0.12  Score=40.85  Aligned_cols=57  Identities=4%  Similarity=-0.021  Sum_probs=33.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                      ..++..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334555555666666666665555443 445556666666666666666666666554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.04  E-value=0.09  Score=35.68  Aligned_cols=67  Identities=4%  Similarity=-0.221  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499            4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-------LLHYDLIITKLGRAKMFDEVQQILHQ   76 (262)
Q Consensus         4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~   76 (262)
                      .+...+..-+..+...|.++.|+-+...+...         ....++       ..++..+..++...+++.+|...|++
T Consensus        18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl---------~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q   88 (167)
T 3ffl_A           18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTL---------SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM   88 (167)
T ss_dssp             ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            34456677788889999999999888775332         112222       23667788899999999999999999


Q ss_pred             HHh
Q 037499           77 LKH   79 (262)
Q Consensus        77 ~~~   79 (262)
                      ..+
T Consensus        89 ALq   91 (167)
T 3ffl_A           89 ALQ   91 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=95.00  E-value=0.32  Score=31.64  Aligned_cols=62  Identities=11%  Similarity=0.116  Sum_probs=45.1

Q ss_pred             hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      .-+..+-++.+...++.|++.+....+++|.+.+++..|+++|+-+..+.  .+...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence            33456666667677788888888888888888888888888888887643  333456666654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.96  E-value=1.2  Score=35.96  Aligned_cols=197  Identities=14%  Similarity=0.111  Sum_probs=124.3

Q ss_pred             cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH--HHHHHHH
Q 037499           19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII--FCNVISF   96 (262)
Q Consensus        19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~   96 (262)
                      .|+++.|++.+-.+.+...     ..............++..|...++++...+.+..+.+..|..+...+  ...++..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r-----~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~  103 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTR-----QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEY  103 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-----SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhh-----hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3778888887744422100     01244556777888999999999999999988888776554443322  2223333


Q ss_pred             HHhcCCHHH--HHHHHHHHhh--cC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C----ChhHHHHH
Q 037499           97 YGRARLLEH--ALQVFDEMSS--FN-VQR---TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--P----DACSYNIL  162 (262)
Q Consensus        97 ~~~~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~l  162 (262)
                      .......+.  -..+.+.+..  .| +-.   .......|...|...|++.+|.+++..+.....  .    -...+...
T Consensus       104 l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q  183 (445)
T 4b4t_P          104 LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ  183 (445)
T ss_dssp             HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            333443332  2222222211  11 111   112345678889999999999999998864322  1    14567788


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH----CCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLK----RRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ++.|...+++..|..+++++..    ....|+  ...+...+..+...+++.+|.+.|.++...
T Consensus       184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            8999999999999999988753    222232  234566777788889999988888877654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.77  E-value=1.6  Score=38.64  Aligned_cols=158  Identities=9%  Similarity=0.044  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHH
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS--FYGRARLLEHALQVFDEMSSFNVQRTVKSF--NTLLNA  131 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~  131 (262)
                      ++...+...|+-+....++..+.+..    +..+...+..  ++.-.|+.+.+..+.+.+.... .|...--  .++.-+
T Consensus       495 ALGli~vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglA  569 (963)
T 4ady_A          495 GMGLCMLGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALA  569 (963)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred             HHhhhhcccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            34445667788888888888777631    2333333333  3446788888888888887642 2322222  234456


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH-HHH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV-DEA  210 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a  210 (262)
                      |+..|+.....+++..+......+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++
T Consensus       570 yaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a  648 (963)
T 4ady_A          570 YAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA  648 (963)
T ss_dssp             TTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred             hcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence            7788898877778888876644444444444555556777777888887776653 34444333333344434443 567


Q ss_pred             HHHHHHHHH
Q 037499          211 LKLKEDMMR  219 (262)
Q Consensus       211 ~~~~~~~~~  219 (262)
                      +.++..+..
T Consensus       649 id~L~~L~~  657 (963)
T 4ady_A          649 IDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcc
Confidence            778887764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.46  E-value=0.44  Score=32.36  Aligned_cols=115  Identities=9%  Similarity=0.023  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC-chHH
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDA-------CSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQP-TLVT  193 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~  193 (262)
                      +-.-+..+...|.++.|+-+...+.....  ++.       .++..+..++...+++..|...|++..+.. .-+ +..+
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            33446677778888888877766544322  221       255667777788888888888888765421 111 1111


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      .+.+-    ......          .......+...--.+..||.+.|++++|+.+++.+
T Consensus       103 ~~~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          103 RPSTG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            11110    000000          00022334455555778888999999999888764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.05  E-value=0.75  Score=29.93  Aligned_cols=72  Identities=11%  Similarity=0.019  Sum_probs=49.2

Q ss_pred             CCCChhHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          152 VSPDACSYNILMHGCVVSRRL---EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      +.+++.+--.+.-++.+..+.   .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+   +.|+
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~  110 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN  110 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCC
Confidence            337777766666677766654   46788888887765322344555566688888888888888888874   4664

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.75  E-value=0.68  Score=28.46  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      .-+..+-++.+... .+.|++.+..+.+++|-+.+++..|.++|+.++
T Consensus        26 ~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           26 AWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444554443 355555555555555555555555555555554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.44  E-value=2.5  Score=34.00  Aligned_cols=190  Identities=9%  Similarity=0.061  Sum_probs=121.8

Q ss_pred             CChhHHHHHHHHHHhc----CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH----HhcC
Q 037499           65 KMFDEVQQILHQLKHD----TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM----LTCG  136 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g  136 (262)
                      ++++.|++.+..+.+.    .....+......++..|...++++...+.+.-+.+..... ......+++.+    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            6788888888766653    1244557778889999999999999988887766443122 23334444433    2233


Q ss_pred             CHHH--HHHHHHHHHhc--CC--C---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCc---hHHHHHHHHHHH
Q 037499          137 KIDR--MTDLFQIMEKY--VS--P---DACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPT---LVTFGTLIYGLC  202 (262)
Q Consensus       137 ~~~~--a~~~~~~~~~~--~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~  202 (262)
                      ..+.  -+.+.+.....  +.  .   .......+...|...|++.+|.+++..+...  |..+.   ...+..-++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3332  22222221111  11  1   2234567889999999999999999998753  32222   345666788899


Q ss_pred             hhCCHHHHHHHHHHHHHh-cCCC--CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          203 LELRVDEALKLKEDMMRV-YNVK--PD--AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       203 ~~g~~~~a~~~~~~~~~~-~~~~--p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ..+++..|..++.++... ....  |+  ...|...+..+...+++.+|...|.+..+
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999999999987432 1122  22  23566677778888898888887776643

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.29  E-value=2.2  Score=32.80  Aligned_cols=130  Identities=12%  Similarity=0.045  Sum_probs=71.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhcCCCCChhhHHHHHHH
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ----VFDEMSSFNVQRTVKSFNTLLNA  131 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~~  131 (262)
                      ++..-|.+.+++++|++++..-                ...+.+.|+...|-+    +++-+.+.+++++......++..
T Consensus        40 Ti~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L  103 (336)
T 3lpz_A           40 LVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC  103 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3444556666666666654332                223334455433333    33445556667777666667666


Q ss_pred             HHhcCCHHH-HHHHHHHH----HhcC--C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          132 MLTCGKIDR-MTDLFQIM----EKYV--S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       132 ~~~~g~~~~-a~~~~~~~----~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      +.....-+- -..+.+.+    .+.+  + -|+.....+...|.+.+++.+|...|-    .|..++...|..++.-+..
T Consensus       104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~  179 (336)
T 3lpz_A          104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK  179 (336)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence            665543111 11122221    2222  3 778888889999999999999888773    2334444666656555444


Q ss_pred             hC
Q 037499          204 EL  205 (262)
Q Consensus       204 ~g  205 (262)
                      .+
T Consensus       180 ~~  181 (336)
T 3lpz_A          180 QD  181 (336)
T ss_dssp             TS
T ss_pred             hc
Confidence            43

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.03  E-value=0.87  Score=33.66  Aligned_cols=52  Identities=13%  Similarity=0.153  Sum_probs=25.0

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK  150 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  150 (262)
                      .+.|+++.+++....-++.. |-|...-..++..+|-.|+++.|.+-++...+
T Consensus         8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34455555555544444433 44444444455555555555555554444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.03  E-value=0.5  Score=37.87  Aligned_cols=58  Identities=3%  Similarity=-0.142  Sum_probs=25.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDEM  113 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  113 (262)
                      .+...|.+.|+++.|.+.+.++.... +..--...+-.+++.+...+++..+...+.+.
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34444445555555555554444321 11112333444444444445555444444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.67  E-value=1.7  Score=34.82  Aligned_cols=97  Identities=8%  Similarity=-0.120  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHH--
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTL--  197 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l--  197 (262)
                      +...+...|.+.|++++|.++|.++.....   .-...+-.+++.+...+++..+...+.+.... .-.++....+.+  
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            455566666666666666666666654332   22344555566666666666666666655432 111122221111  


Q ss_pred             --HHHHHhhCCHHHHHHHHHHHHHh
Q 037499          198 --IYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       198 --i~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                        ...+...+++..|.+.|-+....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence              11123445666666666555554

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.26  E-value=1.5  Score=28.54  Aligned_cols=44  Identities=7%  Similarity=0.185  Sum_probs=19.0

Q ss_pred             HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499          106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME  149 (262)
Q Consensus       106 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  149 (262)
                      ..+-++.+....+.|++.+....+.+|.+.+++.-|.++|+-++
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK  115 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK  115 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=91.38  E-value=0.0076  Score=48.51  Aligned_cols=186  Identities=9%  Similarity=0.071  Sum_probs=112.1

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      -.+|..+..++.+..+.|.+++-+..+.-.++..          ..|.+  =+.|+-+|++.++..+-.+++.       
T Consensus        80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----------ke~~I--DteLi~ayAk~~rL~elEefl~-------  140 (624)
T 3lvg_A           80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----------RESYV--ETELIFALAKTNRLAELEEFIN-------  140 (624)
T ss_dssp             CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----------CSTTT--THHHHHHHHTSCSSSTTTSTTS-------
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----------ccccc--HHHHHHHHHhhCcHHHHHHHHc-------
Confidence            4678889999999999999999999999886652          22233  3377889999888766444322       


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------------------CCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--------------------NVQRTVKSFNTLLNAMLTCGKIDRMT  142 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~~~~g~~~~a~  142 (262)
                       .|+..-...+..-|...|.++.|.-+|..+...                    .-.-++.||--+-.+|...+.+.-|.
T Consensus       141 -~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq  219 (624)
T 3lvg_A          141 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ  219 (624)
T ss_dssp             -CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred             -CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence             244444555666666777776666555543211                    01235667888888888777776665


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499          143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK  214 (262)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  214 (262)
                      ..--.+.-.    +.-...++..|-..|.+++-+.+++.-... -.....+|+-|.-.|++ -++++..+.+
T Consensus       220 icGLniIvh----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK-Y~PeKlmEHl  285 (624)
T 3lvg_A          220 MCGLHIVVH----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK-FKPQKMREHL  285 (624)
T ss_dssp             HHHHHHHCC----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS-SCTTHHHHHH
T ss_pred             Hhcchhccc----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh-cCHHHHHHHH
Confidence            554433321    111223445566677777766666665532 23345566666555543 2344433333

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.86  E-value=4.3  Score=30.88  Aligned_cols=142  Identities=11%  Similarity=0.081  Sum_probs=74.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhcCCCCChhhHHHHHH
Q 037499           59 TKLGRAKMFDEVQQILHQLKHDT----RVVPEEIIFCNVISFYGRARLLEHALQ----VFDEMSSFNVQRTVKSFNTLLN  130 (262)
Q Consensus        59 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~  130 (262)
                      ......|++=+|.+.++-+..+.    ...--......-...+.+.|+...|-+    +.+.+.+.+.+++......++.
T Consensus        21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~  100 (312)
T 2wpv_A           21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR  100 (312)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred             HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            34444566666665554443321    111111222223334455676554444    3455566677777777777777


Q ss_pred             HHHhcCCHH-HHHHHHHHH----HhcC--C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499          131 AMLTCGKID-RMTDLFQIM----EKYV--S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC  202 (262)
Q Consensus       131 ~~~~~g~~~-~a~~~~~~~----~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  202 (262)
                      .+.....-+ .-.++++.+    .+.+  + .++.....+...|.+.|++.+|+..|-.    |-.-|...+..++.-+.
T Consensus       101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~  176 (312)
T 2wpv_A          101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL  176 (312)
T ss_dssp             HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence            765533211 112222222    2222  2 6778888888888888888888877641    11113455555554444


Q ss_pred             hh
Q 037499          203 LE  204 (262)
Q Consensus       203 ~~  204 (262)
                      ..
T Consensus       177 ~~  178 (312)
T 2wpv_A          177 CQ  178 (312)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.62  E-value=4  Score=30.19  Aligned_cols=54  Identities=17%  Similarity=0.142  Sum_probs=28.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      ..+.|.+++|++....-.+..|.|...-..++..+|-.|+++.|.+-++...+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            344555555555555555555555555555555555555555555555555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.38  E-value=2.5  Score=27.47  Aligned_cols=67  Identities=12%  Similarity=0.068  Sum_probs=50.4

Q ss_pred             CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          119 QRTVKSFNTLLNAMLTCGK---IDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       119 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      .|+..+--.+..++.++..   ..+++.+++.+.+.++ .....+--+.-++.+.|+++.|.+..+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            6777776667777777765   4467888888776655 34556667778888999999999999988885

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.09  E-value=2.8  Score=27.61  Aligned_cols=70  Identities=11%  Similarity=0.021  Sum_probs=47.8

Q ss_pred             CChhHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          154 PDACSYNILMHGCVVSRRL---EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       154 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      ++..+--.+.-++.+..+.   .+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+.   .|+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~  109 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERN  109 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCC
Confidence            6666666666677776654   467778888777543223444445566788888888888888888853   564

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.81  E-value=7.5  Score=30.69  Aligned_cols=168  Identities=7%  Similarity=-0.028  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCChhhH--
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP---EEIIFCNVISFYGRAR-LLEHALQVFDEMSSFNVQRTVKSF--  125 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--  125 (262)
                      .+...+...|.+.|+.++..+++.....-.+..+   .......++..+.... ..+.-.++..+..+-. .-...+|  
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            4567889999999999999999988865322223   2445677888887754 3344444444433211 0111223  


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCchHH
Q 037499          126 ----NTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD-----ACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLVT  193 (262)
Q Consensus       126 ----~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~  193 (262)
                          ..++..|...|++.+|.+++..+..... .|     ...+..-+..|...+++.++...+......  .+.+++.+
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence                3678899999999999999998876533 22     345667788899999999999999887654  22233333


Q ss_pred             HHHH----HHHHH-hhCCHHHHHHHHHHHHHh
Q 037499          194 FGTL----IYGLC-LELRVDEALKLKEDMMRV  220 (262)
Q Consensus       194 ~~~l----i~~~~-~~g~~~~a~~~~~~~~~~  220 (262)
                      ...+    ...+. ..+++..|...|-+..+.
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            2221    12345 789999998887776554

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=88.76  E-value=4.7  Score=28.34  Aligned_cols=56  Identities=9%  Similarity=-0.005  Sum_probs=43.1

Q ss_pred             cCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499          135 CGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT  190 (262)
Q Consensus       135 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  190 (262)
                      ++...++.++|..|...+.  .-...|......+...|++.+|..+|+.-++.+-.|-
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~  149 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY  149 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence            4446678888888877666  5667788888888888888888888888888776663

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=87.47  E-value=2.8  Score=32.54  Aligned_cols=64  Identities=14%  Similarity=0.207  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCC
Q 037499          194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE--LSLALGFKEEMVRNKIE  259 (262)
Q Consensus       194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~  259 (262)
                      ...++.-|...|+.++|.+.++++..- .+ -...+...+..++-+.++  .+.+..++..+.+.|+-
T Consensus       220 i~~lL~EY~~s~D~~EA~~ci~EL~~p-~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll  285 (358)
T 3eiq_C          220 IDMLLKEYLLSGDISEAEHCLKELEVP-HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI  285 (358)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCT-TC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHccCC-cc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence            566777788888888888888887321 11 122334455555554433  34566777777766653

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=86.97  E-value=4.5  Score=26.13  Aligned_cols=63  Identities=13%  Similarity=0.161  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCC
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR--LEDAWKVFDEMLKRRL  187 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~  187 (262)
                      ...++.-|...|+.++|.+.++++.........+...+..+.-+.++  .+.+..++..+.+.|+
T Consensus        10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~   74 (129)
T 2nsz_A           10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST   74 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence            34556666666666666666666643211223333444444444322  3455566666655543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=86.64  E-value=6.5  Score=27.63  Aligned_cols=57  Identities=18%  Similarity=0.089  Sum_probs=44.6

Q ss_pred             cCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          169 SRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      .++...+..+|..|...|+.-. ..-|......+...|++.+|..+|+.-.+. +..|-
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~  149 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY  149 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence            4457789999999998876443 456777788888899999999999988876 66774

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=85.91  E-value=3.6  Score=27.52  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=12.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 037499          126 NTLLNAMLTCGKIDRMTDLFQIME  149 (262)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~~~~~~~  149 (262)
                      ..++.-|...|+.++|.+.++++.
T Consensus        13 ~~lL~EY~~~~D~~EA~~cl~EL~   36 (152)
T 2ion_A           13 DMLLKEYLLSGDISEAEHCLKELE   36 (152)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhC
Confidence            344555555555555555555553

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=85.39  E-value=4.6  Score=24.74  Aligned_cols=78  Identities=8%  Similarity=-0.069  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE  181 (262)
Q Consensus       102 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  181 (262)
                      ..++|..+-+.+...+.  ...+--.-+..+...|++++|..+.+...   .||...|.++...  +.|-.+++..-+.+
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~   93 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCEW--HLGLGAALDRRLAG   93 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence            44555555555554331  11111112233445555555555433222   2555555544433  55555555555545


Q ss_pred             HHHCC
Q 037499          182 MLKRR  186 (262)
Q Consensus       182 m~~~~  186 (262)
                      +..+|
T Consensus        94 la~sg   98 (115)
T 2uwj_G           94 LGGSS   98 (115)
T ss_dssp             HHTCS
T ss_pred             HHhCC
Confidence            54443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=85.14  E-value=6.2  Score=26.01  Aligned_cols=69  Identities=6%  Similarity=-0.061  Sum_probs=28.6

Q ss_pred             ccHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499           85 PEEIIFCNVISFYGRARLL---EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      |+..+-....-++.+..+.   .+++.+++++.+.+-.......--|.-++.+.|++++|.+..+.+.+..|
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            4444444444444444432   34445555544432111111122233344455555555555555444433

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=84.98  E-value=4.9  Score=24.68  Aligned_cols=77  Identities=9%  Similarity=-0.052  Sum_probs=33.9

Q ss_pred             CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037499          102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE  181 (262)
Q Consensus       102 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  181 (262)
                      ..++|..+-+.+...+.  ...+--.-+..+...|++++|..+.+...   .||...|.++...  +.|-.+++..-+.+
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~   94 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCEY--RLGLGSALESRLNR   94 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence            44555555555544331  11111112233445555555555443322   2555555544433  44555555555544


Q ss_pred             HHHC
Q 037499          182 MLKR  185 (262)
Q Consensus       182 m~~~  185 (262)
                      +..+
T Consensus        95 la~s   98 (116)
T 2p58_C           95 LARS   98 (116)
T ss_dssp             HTTC
T ss_pred             HHhC
Confidence            4444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=84.51  E-value=2.1  Score=31.37  Aligned_cols=20  Identities=30%  Similarity=0.321  Sum_probs=13.1

Q ss_pred             HHHHHHHhcCChhHHHHHHH
Q 037499           56 LIITKLGRAKMFDEVQQILH   75 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~   75 (262)
                      +.+...++.|+.+.+..+++
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~   26 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLE   26 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHH
Confidence            44556677788776666654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=81.89  E-value=5.6  Score=28.27  Aligned_cols=185  Identities=9%  Similarity=-0.006  Sum_probs=90.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHH
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS--FNTLLNAM  132 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~  132 (262)
                      .+...++.|+.+.+..+++.+.+. +..++..  .-.+.+...+..|+.+-    ++.+.+.|..++...  -.+.+...
T Consensus        12 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A   86 (241)
T 1k1a_A           12 PLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLA   86 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHH
Confidence            345667789998888888866553 3333311  01123444456677654    444445554443221  12234445


Q ss_pred             HhcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH---HHHHHHHHHhhC
Q 037499          133 LTCGKIDRMTDLFQIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT---FGTLIYGLCLEL  205 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g  205 (262)
                      +..|+.+-+..+++.....    ...+....+.+ ...+..|+.+    +++.+.+.|..++...   -.+.+...+..|
T Consensus        87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            5678877666666554311    11222222333 2334556644    4455555555444221   123334455678


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          206 RVDEALKLKEDMMRVYNVKPDA---QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       206 ~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      +.+-+..++    +. |..++.   .-.+. +...+..|+.+    +++.+.+.|..|+
T Consensus       162 ~~~~v~~Ll----~~-g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          162 SLSMVQLLL----QH-GANVNAQMYSGSSA-LHSASGRGLLP----LVRTLVRSGADSS  210 (241)
T ss_dssp             CHHHHHHHH----HT-TCCTTCBCTTSCBH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred             CHHHHHHHH----Hc-CCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHhcCCCCC
Confidence            776554444    32 444432   11222 23334556644    4555556776665

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.58  E-value=7  Score=23.96  Aligned_cols=76  Identities=11%  Similarity=-0.056  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499          137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED  216 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  216 (262)
                      ..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+    ..||...|..|.  -.+.|--+++..-+.+
T Consensus        21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~   93 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAG   93 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence            46677777776666544 3333334456677888888888776544    367877777663  3577888888777777


Q ss_pred             HHH
Q 037499          217 MMR  219 (262)
Q Consensus       217 ~~~  219 (262)
                      +..
T Consensus        94 la~   96 (115)
T 2uwj_G           94 LGG   96 (115)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            754

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=81.54  E-value=16  Score=28.06  Aligned_cols=48  Identities=8%  Similarity=0.052  Sum_probs=31.3

Q ss_pred             CChhHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037499           65 KMFDEVQQILHQLKHDTRV---VPEEIIFCNVISFYGRARLLEHALQVFDE  112 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  112 (262)
                      +++++.++-++.-.+...+   ---..+|.++..-|.+.+++++|++++..
T Consensus        10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~   60 (336)
T 3lpz_A           10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS   60 (336)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            3455555555555554322   22345677788889999999999998754

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=81.32  E-value=17  Score=28.23  Aligned_cols=79  Identities=10%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499          159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQVFASLIKG  236 (262)
Q Consensus       159 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  236 (262)
                      ...++.=|...|+.++|.+.++++..-... .......+..++-+.++  .+...+++..+... ++-+.......+...
T Consensus       220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~Gf~~v  297 (358)
T 3eiq_C          220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGYERI  297 (358)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence            577788888889999999998888643221 23334444444444333  45577788777765 555554444444444


Q ss_pred             HHh
Q 037499          237 LCA  239 (262)
Q Consensus       237 ~~~  239 (262)
                      +..
T Consensus       298 l~~  300 (358)
T 3eiq_C          298 YNE  300 (358)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            433

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=80.98  E-value=7.5  Score=23.89  Aligned_cols=76  Identities=8%  Similarity=-0.064  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499          137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED  216 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  216 (262)
                      ..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+-    .||...|..|.  -.+.|--+++..-+.+
T Consensus        22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~   94 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNR   94 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence            46777777777766544 33333344566778899998888776543    67888777764  3577888887777767


Q ss_pred             HHH
Q 037499          217 MMR  219 (262)
Q Consensus       217 ~~~  219 (262)
                      +..
T Consensus        95 la~   97 (116)
T 2p58_C           95 LAR   97 (116)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            644

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=80.78  E-value=10  Score=25.31  Aligned_cols=49  Identities=12%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499          141 MTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP  189 (262)
Q Consensus       141 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  189 (262)
                      +.++|..|...+.  .-...|......+...|++.+|..+|+.-++.+-.|
T Consensus        84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P  134 (152)
T 4a1g_A           84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP  134 (152)
T ss_dssp             HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            5566666655544  445555666666666666666666666666655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.81
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.81
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.52
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.45
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.3
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.21
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.2
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.11
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.08
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.08
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.07
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.03
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.02
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.0
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.89
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.84
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.8
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.8
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.59
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.53
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.47
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.34
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.3
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.23
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.06
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.02
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.97
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.88
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.88
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	97.37
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.11
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.71
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.03
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.62
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	88.46
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	84.19
d1u9pa1	36	Arc repressor {Salmonella bacteriophage P22 [TaxId	84.09
d1khda1	69	Anthranilate phosphoribosyltransferase (TrpD) {Pec	80.36

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-18  Score=134.90  Aligned_cols=239  Identities=12%  Similarity=0.054  Sum_probs=134.1

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++..+..++.++.+.|++++|+..|+.+..           ..+.+..+|..+..++.+.|++++|+..+....+..
T Consensus        29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~   97 (388)
T d1w3ba_          29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-----------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK   97 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHhhhhccccccccccccccccc
Confidence            355666777888888888888888888888733           233467788888888888888888887776665431


Q ss_pred             CC------------------------------------------------------------------CccHHHHHHHHH
Q 037499           82 RV------------------------------------------------------------------VPEEIIFCNVIS   95 (262)
Q Consensus        82 ~~------------------------------------------------------------------~~~~~~~~~l~~   95 (262)
                      ..                                                                  +.+...+..+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  177 (388)
T d1w3ba_          98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC  177 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcc
Confidence            00                                                                  001223333444


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499           96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA  175 (262)
Q Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  175 (262)
                      .+...|++++|...+++..+.. +.+..+|..+...+...|++++|+..++......+.+...+..+...+.+.|++++|
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  256 (388)
T d1w3ba_         178 VFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHH
Confidence            4455555556665555555433 333444555555555555555555555555444444444455555555555555555


Q ss_pred             HHHHHHHHHCC---------------------------------CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 037499          176 WKVFDEMLKRR---------------------------------LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN  222 (262)
Q Consensus       176 ~~~~~~m~~~~---------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  222 (262)
                      ...|++..+..                                 .+.+...+..+...+...|++++|++.|++..+   
T Consensus       257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---  333 (388)
T d1w3ba_         257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE---  333 (388)
T ss_dssp             HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence            55555544432                                 122334444444455555555555555555543   


Q ss_pred             CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          223 VKP-DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       223 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ..| +..++..+..+|.+.|++++|.+.|++.++
T Consensus       334 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            223 344555555666666666666666666554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-17  Score=127.51  Aligned_cols=232  Identities=13%  Similarity=0.063  Sum_probs=191.6

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV   84 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   84 (262)
                      +...+...+..+.+.|++++|+..|+.+.+           ..+.+..+|..+..++...|+++.|+..|.+..+..  +
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----------~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p   84 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-----------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--P   84 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHH-----------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--c
Confidence            445567888999999999999999999843           445578899999999999999999999999998753  5


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-h---------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV-K---------------SFNTLLNAMLTCGKIDRMTDLFQIM  148 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---------------~~~~ll~~~~~~g~~~~a~~~~~~~  148 (262)
                      -+...+..+..+|...|++++|.+.+++.....  |+. .               .....+..+...+.+.+|.+.|.+.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence            567889999999999999999999999987643  221 1               1111223344556788899999888


Q ss_pred             HhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-
Q 037499          149 EKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-  225 (262)
Q Consensus       149 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-  225 (262)
                      ....+  .+..++..+...+...|++++|...+++...... -+...|..+..++...|++++|++.|++..+.   .| 
T Consensus       163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~  238 (323)
T d1fcha_         163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPG  238 (323)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred             HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHH---hhc
Confidence            77665  6678889999999999999999999999988642 35778888999999999999999999999875   34 


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          226 DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +..+|..+..+|.+.|++++|++.|++.++
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            577899999999999999999999999876

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-17  Score=130.22  Aligned_cols=222  Identities=16%  Similarity=0.170  Sum_probs=193.1

Q ss_pred             CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499            3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR   82 (262)
Q Consensus         3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   82 (262)
                      |.++..+..++..+...|++++|...++....           ..+.+...|..+...+...|++++|+..++...... 
T Consensus       166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  233 (388)
T d1w3ba_         166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-  233 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred             cchhHHHHhhcccccccCcHHHHHHHHHHHHH-----------hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-
Confidence            34455677888999999999999999998733           334477899999999999999999999999998853 


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499           83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                       +.+...+..+..++.+.|++++|++.|++..+.. +.+..++..+..++...|++++|++.++......+.+...+..+
T Consensus       234 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  311 (388)
T d1w3ba_         234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL  311 (388)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHH
Confidence             5667788889999999999999999999998875 56678899999999999999999999999999888899999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC
Q 037499          163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVG  241 (262)
Q Consensus       163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  241 (262)
                      ...+.+.|++++|...|++..+.. +-+..++..+..+|.+.|++++|+..|++..+   +.| +...|..+..+|.+.|
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999998863 23567888899999999999999999999985   456 5778999999998887


Q ss_pred             C
Q 037499          242 E  242 (262)
Q Consensus       242 ~  242 (262)
                      |
T Consensus       388 D  388 (388)
T d1w3ba_         388 D  388 (388)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-14  Score=111.00  Aligned_cols=235  Identities=11%  Similarity=-0.010  Sum_probs=181.6

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      +|.++.+|..++.++...|++++|+..|++...           -.+-+...|..++..+...|++++|++.+++.....
T Consensus        49 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  117 (323)
T d1fcha_          49 DPKHMEAWQYLGTTQAENEQELLAISALRRCLE-----------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT  117 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc-----------cccccccccccccccccccccccccccchhhHHHhc
Confidence            577778899999999999999999999998743           234478899999999999999999999999987642


Q ss_pred             CCCcc-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037499           82 RVVPE-------------EIIFCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQI  147 (262)
Q Consensus        82 ~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  147 (262)
                      .-...             .......+..+...+.+.+|.+.|.+..+.. -..+..++..+...+...|++++|+..|++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  197 (323)
T d1fcha_         118 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  197 (323)
T ss_dssp             TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccc
Confidence            11000             0111122334445667888999998877643 123566788889999999999999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-----
Q 037499          148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-----  222 (262)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----  222 (262)
                      .....+.+..+|..+...|.+.|++++|.+.|++..+... -+..++..+..+|.+.|++++|+..|++..+...     
T Consensus       198 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             ccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            9988888899999999999999999999999999988632 2567888899999999999999999999876311     


Q ss_pred             ----CCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499          223 ----VKPDAQVFASLIKGLCAVGELSLALG  248 (262)
Q Consensus       223 ----~~p~~~~~~~l~~~~~~~g~~~~a~~  248 (262)
                          .......|..+-.++...|+.+.+..
T Consensus       277 ~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         277 RGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                11123456677777777777765543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-13  Score=104.17  Aligned_cols=215  Identities=10%  Similarity=0.019  Sum_probs=173.4

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCccH
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      +..+...+.+.+.+++|+++++.+..           -.+-+..+|+....++...| ++++|+..++...+..  +-+.
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~-----------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~  112 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIE-----------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNY  112 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHH-----------HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--Hhhh
Confidence            45677788899999999999999843           45558889999999988876 5899999999998853  6678


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      .+|..+..++.+.|++++|++.++++.+.. +.+..+|..+..++...|++++|+..++++.+..+.+...|+.+...+.
T Consensus       113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         113 QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence            899999999999999999999999999876 6788999999999999999999999999999998888999998887777


Q ss_pred             hcCC------hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499          168 VSRR------LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA  239 (262)
Q Consensus       168 ~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  239 (262)
                      +.+.      +++|...+....+... .+...|..+...+. ....+++.+.++...+......+...+..+...|..
T Consensus       192 ~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         192 NTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence            7665      5788888888888642 35666766655544 444677888888877652333456677777777754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=7.7e-13  Score=100.14  Aligned_cols=222  Identities=11%  Similarity=0.087  Sum_probs=175.7

Q ss_pred             hHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCCccH
Q 037499           22 PKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA--------------KMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus        22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      .+++..+|+++           +...+.++..|...+..+.+.              +..++|..+|++..+. ..+.+.
T Consensus        32 ~~Rv~~vyerA-----------l~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-~~p~~~   99 (308)
T d2onda1          32 TKRVMFAYEQC-----------LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNM   99 (308)
T ss_dssp             HHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCH
T ss_pred             HHHHHHHHHHH-----------HHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-cCCCCH
Confidence            45577777776           334455778888777765443              3457889999998864 245566


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-H
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG-C  166 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~  166 (262)
                      ..|...+..+.+.|+++.|..+|+++.+........+|...+..+.+.|+.++|.++|+...+..+.+...|...... +
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~  179 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            788888999999999999999999998764222345789999999999999999999999998888666666655544 3


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChh
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGELS  244 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~  244 (262)
                      ...|+.+.|..+|+.+.+. .+.+...|...+..+...|+++.|..+|++..+..+..|+  ...|...+..-...|+.+
T Consensus       180 ~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~  258 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             HhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence            4568999999999999987 3446788999999999999999999999999876445553  457888888878899999


Q ss_pred             HHHHHHHHHHHc
Q 037499          245 LALGFKEEMVRN  256 (262)
Q Consensus       245 ~a~~~~~~m~~~  256 (262)
                      .+..+++++.+.
T Consensus       259 ~~~~~~~r~~~~  270 (308)
T d2onda1         259 SILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.3e-12  Score=94.90  Aligned_cols=199  Identities=7%  Similarity=0.039  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      ...|+.+...+.+.+.+++|+++++++.+..  |-+...|+....++...+ ++++|++.+++..+.. +-+..+|..+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            5677788888999999999999999999863  566778899898888876 5999999999998876 67789999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC---
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR---  206 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---  206 (262)
                      .++.+.|++++|++.++++.+..+.+...|..+...+.+.|++++|...++.+.+.++. +...|+.+...+.+.+.   
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            99999999999999999999999999999999999999999999999999999997533 56677766666555444   


Q ss_pred             ---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          207 ---VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       207 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                         +++|+..+.+..+.  .+-+...|..+...+... ..+++.+.++...+.
T Consensus       199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDL  248 (315)
T ss_dssp             HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHh
Confidence               68899999988864  233667777776655444 467788888877663

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.7e-13  Score=97.09  Aligned_cols=201  Identities=9%  Similarity=-0.082  Sum_probs=147.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      ...+|..+..+|.+.|++++|+..|++..+..  |-++.+|..+..++.+.|++++|++.|++..+.. +.+..++..+.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg  112 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHH
Confidence            45688889999999999999999999999853  5678899999999999999999999999999876 55677899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh----C
Q 037499          130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE----L  205 (262)
Q Consensus       130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g  205 (262)
                      .+|...|++++|...|+...+..+.+......+..++.+.+..+.+..+.........  +...+. ++..+...    +
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~  189 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWN-IVEFYLGNISEQT  189 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHHH-HHHHHTTSSCHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--hhhhhh-HHHHHHHHHHHHH
Confidence            9999999999999999999888776666666666666777776666666666655422  222222 22222211    2


Q ss_pred             CHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499          206 RVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD  261 (262)
Q Consensus       206 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd  261 (262)
                      ..+.+...+......   .| ...+|..+...|...|++++|...|++.++  ..|+
T Consensus       190 ~~~~~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~  241 (259)
T d1xnfa_         190 LMERLKADATDNTSL---AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH  241 (259)
T ss_dssp             HHHHHHHHCCSHHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred             HHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC
Confidence            223332222222111   12 234677788899999999999999999886  3454

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.3e-11  Score=91.82  Aligned_cols=194  Identities=10%  Similarity=0.074  Sum_probs=155.9

Q ss_pred             CChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 037499           20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR   99 (262)
Q Consensus        20 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (262)
                      +..++|..+|++....          ..+.+...|...+....+.|+++.|..+|+.+.+.. ......+|...+..+.+
T Consensus        78 ~~~~~a~~i~~ral~~----------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-~~~~~~~w~~~~~~~~~  146 (308)
T d2onda1          78 LFSDEAANIYERAIST----------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHHHHTT----------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH----------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence            4457888999887432          234467788999999999999999999999998742 12224578899999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037499          100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV  178 (262)
Q Consensus       100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  178 (262)
                      .++.+.|.++|+++.+.+ +.+...|...... +...|+.+.|..+|+.+....+.+...|...+..+.+.|+++.|+.+
T Consensus       147 ~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~  225 (308)
T d2onda1         147 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  225 (308)
T ss_dssp             HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHH
Confidence            999999999999998875 4555566555543 34568999999999999998888899999999999999999999999


Q ss_pred             HHHHHHCC-CCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 037499          179 FDEMLKRR-LQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP  225 (262)
Q Consensus       179 ~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p  225 (262)
                      |++..+.. ..|.  ...|...+..-...|+.+.+.++++++.+.+.-.+
T Consensus       226 fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            99998863 3333  45788888887889999999999999987644333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.6e-12  Score=95.66  Aligned_cols=198  Identities=12%  Similarity=-0.142  Sum_probs=139.8

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      .+..++..|.+.|++++|+..|+....           -.+.++.+|+.+..++.+.|++++|+..|+++.+..  +-+.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~-----------l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~  105 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALA-----------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYN  105 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhc-----------cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhh
Confidence            466788999999999999999999844           344588999999999999999999999999999853  4557


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV  167 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (262)
                      .++..+..++...|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+.......... ...++ ++..+.
T Consensus       106 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~  182 (259)
T d1xnfa_         106 YAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE-QWGWN-IVEFYL  182 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC-STHHH-HHHHHT
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh-hhhhh-HHHHHH
Confidence            788999999999999999999999998875 445555555555666667666666666666554332 22222 222222


Q ss_pred             hcCC----hhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          168 VSRR----LEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       168 ~~g~----~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      ....    .+.+...+......  .| ...+|..+...+...|++++|.+.|++...   ..|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~  241 (259)
T d1xnfa_         183 GNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVH  241 (259)
T ss_dssp             TSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCC
Confidence            2211    12222222111111  12 234666788899999999999999999985   3554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=5.4e-10  Score=85.14  Aligned_cols=239  Identities=10%  Similarity=-0.020  Sum_probs=157.0

Q ss_pred             HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CC-Ccc
Q 037499           11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---RV-VPE   86 (262)
Q Consensus        11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~   86 (262)
                      ..+.++...|++++|+++++.......      ..........+..+..++...|++++|+..+++..+..   +. ...
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~------~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELP------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCC------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCc------CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            346677899999999999988644210      00001124567888899999999999999999886521   11 112


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C
Q 037499           87 EIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQRT---VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-----P  154 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~  154 (262)
                      ...+..+...+...|++..+...+.+....    +....   ...+..+...+...|+++.+...+........     .
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            345666777888888988888888766431    11111   23455566777788888888877766554321     0


Q ss_pred             -----------------------------------------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---c
Q 037499          155 -----------------------------------------DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP---T  190 (262)
Q Consensus       155 -----------------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~  190 (262)
                                                               ....+......+...|++++|...++.........   .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence                                                     11123344555566777777777777665542221   2


Q ss_pred             hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh---cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          191 LVTFGTLIYGLCLELRVDEALKLKEDMMRV---YNVKPD-AQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       191 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      ...+..+..++...|++++|...+++....   .+..|+ ..++..+..+|...|++++|.+.+++..+
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334556777888999999999999887542   133333 44677788889999999999999888654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=2.2e-10  Score=87.30  Aligned_cols=221  Identities=9%  Similarity=-0.071  Sum_probs=158.3

Q ss_pred             hhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----------hcCChhHHHHHHHHHHhcCCCCcc
Q 037499           17 RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG----------RAKMFDEVQQILHQLKHDTRVVPE   86 (262)
Q Consensus        17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~   86 (262)
                      ...+..++|+++++.+..           ..+-+...|+..-..+.          ..|.+++|+.+++...+..  +-+
T Consensus        40 ~~~~~~~~al~~~~~~l~-----------~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~  106 (334)
T d1dcea1          40 QAGELDESVLELTSQILG-----------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKS  106 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred             hcccccHHHHHHHHHHHH-----------HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCc
Confidence            334445899999998843           23335566655443333          3345789999999998753  567


Q ss_pred             HHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499           87 EIIFCNVISFYGRAR--LLEHALQVFDEMSSFNVQRTVKSFN-TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM  163 (262)
Q Consensus        87 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  163 (262)
                      ...|..+..++...+  ++++|+..++++.+.. +++...+. .....+...+.+++|+..++......+.+...|+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~  185 (334)
T d1dcea1         107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            777777777776665  5899999999998875 55666654 4456777889999999999999998888899999999


Q ss_pred             HHHHhcCChhHHHHHH------------------------------HHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499          164 HGCVVSRRLEDAWKVF------------------------------DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL  213 (262)
Q Consensus       164 ~~~~~~g~~~~a~~~~------------------------------~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  213 (262)
                      ..+.+.|++++|...+                              ....... +++...+..+...+...|+.++|...
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~  264 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKE  264 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHH
Confidence            9998888765442221                              1111111 11222333445566777889999988


Q ss_pred             HHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          214 KEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVR  255 (262)
Q Consensus       214 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  255 (262)
                      +.+..+.   .| +...+..+..+|...|+.++|.+.+++..+
T Consensus       265 ~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         265 LQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             HHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8877642   34 556778888899999999999999999887

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.6e-09  Score=73.78  Aligned_cols=129  Identities=8%  Similarity=-0.027  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  132 (262)
                      .|+. ...+...|+++.|++.|.++     .+|+..+|..+..+|...|++++|++.|++..+.. +.+...|..+..+|
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~   80 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence            3443 55677788888888888754     24566778888888888888888888888888776 56677888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC----------------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSP----------------DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ  188 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  188 (262)
                      .+.|++++|++.|++.....+.                ...++..+..++.+.|++++|.+.+.........
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            8888888888888877543221                1244556666777777777777777776665433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.1e-09  Score=73.02  Aligned_cols=123  Identities=9%  Similarity=-0.071  Sum_probs=104.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE  173 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  173 (262)
                      ...+...|++++|++.|.++.    +|+..+|..+..+|...|++++|++.|++..+..+.+...|..+..+|.+.|+++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence            556778999999999998753    6778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCC--------------Cc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          174 DAWKVFDEMLKRRLQ--------------PT-LVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       174 ~a~~~~~~m~~~~~~--------------~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      +|...|++.......              ++ ..++..+..++.+.|++++|.+.+....+.
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999998753110              11 244556777889999999999999988753

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.7e-09  Score=66.96  Aligned_cols=91  Identities=14%  Similarity=0.066  Sum_probs=47.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499           94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE  173 (262)
Q Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  173 (262)
                      ...+.+.|++++|+..|++..+.. |.+...|..+..+|...|++++|+..+....+..+.+...|..+..++...|+++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            344445555555555555555443 3444455555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHC
Q 037499          174 DAWKVFDEMLKR  185 (262)
Q Consensus       174 ~a~~~~~~m~~~  185 (262)
                      +|...|++..+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            555555555543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=7.7e-09  Score=76.99  Aligned_cols=202  Identities=8%  Similarity=-0.016  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CCh
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDT---RVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQ-RTV  122 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~  122 (262)
                      ..|......|...+++++|.+.|.+..+-.   +-++ ...+|..+..+|.+.|++++|.+.+++..+.    |.. ...
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            356677889999999999999999886521   1112 2467899999999999999999999977542    211 113


Q ss_pred             hhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-----
Q 037499          123 KSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-----  190 (262)
Q Consensus       123 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----  190 (262)
                      .++..+...|.. .|++++|++.+++..+...      .-..++..+...+...|++++|...|++.........     
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  197 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence            456666666744 6999999999988754322      1245688899999999999999999999887532211     


Q ss_pred             h-HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh--cCChhHHHHHHHHH
Q 037499          191 L-VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD---AQVFASLIKGLCA--VGELSLALGFKEEM  253 (262)
Q Consensus       191 ~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~--~g~~~~a~~~~~~m  253 (262)
                      . ..+...+..+...|+++.|.+.+++..+...-.++   ......++.++..  .+.+++|+..|+.+
T Consensus       198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            1 12334445667889999999999988643111112   2345666666655  34577777766543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=9.9e-09  Score=69.24  Aligned_cols=93  Identities=11%  Similarity=0.044  Sum_probs=66.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR  171 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  171 (262)
                      .....|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+..+.+..+|..++.++...|+
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            34556667777777777777777665 55666777777777777777777777777777666667777777777777777


Q ss_pred             hhHHHHHHHHHHHC
Q 037499          172 LEDAWKVFDEMLKR  185 (262)
Q Consensus       172 ~~~a~~~~~~m~~~  185 (262)
                      +++|...+++....
T Consensus        94 ~~eA~~~~~~a~~~  107 (159)
T d1a17a_          94 FRAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            77777777777765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=8.2e-09  Score=69.65  Aligned_cols=110  Identities=13%  Similarity=0.075  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  132 (262)
                      .+......+.+.|++++|+..|++..+..  +.+...|..+..+|...|++++|++.|++..+.. +.+..+|..+..++
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~   88 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHH
Confidence            45566778999999999999999999864  6778899999999999999999999999999876 66778999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG  165 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  165 (262)
                      ...|++++|...+++.....+.+...+..+..+
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            999999999999999998877666666555433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.2e-09  Score=65.78  Aligned_cols=103  Identities=10%  Similarity=-0.001  Sum_probs=58.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499           57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG  136 (262)
Q Consensus        57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  136 (262)
                      -...+.+.|++++|+..|.+..+..  |.+...|..+..+|.+.|++++|++.+.+..+.+ +.+...|..+..++...|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence            4455555566666666666665542  4445555556666666666666666666655554 445555666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499          137 KIDRMTDLFQIMEKYVSPDACSYNIL  162 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~~~~~~~~~~l  162 (262)
                      ++++|+..|++..+..+.+...+..+
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            66666666666655544444444333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.2e-09  Score=76.67  Aligned_cols=102  Identities=13%  Similarity=0.029  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      |+...+......+.+.|++++|+..|++..+..  |.+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence            577778888999999999999999999988753  6678889999999999999999999999998865 5567889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVS  153 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~  153 (262)
                      ..+|...|++++|+..|++.....+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999998766443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.03  E-value=2.1e-07  Score=67.96  Aligned_cols=226  Identities=11%  Similarity=-0.029  Sum_probs=160.6

Q ss_pred             CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 037499            5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR----AKMFDEVQQILHQLKHD   80 (262)
Q Consensus         5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~   80 (262)
                      ||..+..|+..+.+.+++++|++.|++..+.             -+...+..|...|..    ..+...|...+......
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence            4556788999999999999999999998443             267777778888877    67899999999998875


Q ss_pred             CCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHhcC
Q 037499           81 TRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML----TCGKIDRMTDLFQIMEKYV  152 (262)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~  152 (262)
                      .    +......+...+..    ..+.+.|...++...+.|. +.  ....+...+.    .......+...+...... 
T Consensus        68 ~----~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~--a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-  139 (265)
T d1ouva_          68 N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AE--GCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-  139 (265)
T ss_dssp             T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HH--HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-
T ss_pred             c----ccchhhccccccccccccchhhHHHHHHHhhhhhhhh-hh--HHHhhcccccCCCcccchhHHHHHHhhhhhcc-
Confidence            2    33334444444433    5678999999999888763 22  2223333333    234566777777665543 


Q ss_pred             CCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhcCCC
Q 037499          153 SPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRVYNVK  224 (262)
Q Consensus       153 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~  224 (262)
                       .+...+..+...|..    ..+...+...++...+.|   +......+...|..    ..++++|+.+|++..+. |  
T Consensus       140 -~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g--  212 (265)
T d1ouva_         140 -NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E--  212 (265)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T--
T ss_pred             -cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-c--
Confidence             666777888888775    456677888888887765   55566556555554    56899999999999775 3  


Q ss_pred             CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 037499          225 PDAQVFASLIKGLCA----VGELSLALGFKEEMVRNKIE  259 (262)
Q Consensus       225 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~  259 (262)
                       ++..+..|...|..    ..+.++|.++|++..+.|-.
T Consensus       213 -~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         213 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             -CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence             45566677777765    34789999999999887743

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=5.1e-09  Score=73.39  Aligned_cols=100  Identities=7%  Similarity=-0.071  Sum_probs=92.5

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      |+...+......|.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|++++|+..|+...+..+.+..+|..+..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            677778888999999999999999999998876 7788899999999999999999999999999988888999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 037499          165 GCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      +|.+.|++++|...|++..+.
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999988763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=5e-09  Score=78.06  Aligned_cols=205  Identities=11%  Similarity=-0.009  Sum_probs=141.3

Q ss_pred             HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---C-CC
Q 037499            9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---R-VV   84 (262)
Q Consensus         9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~   84 (262)
                      |...+..|...|++++|.+.|.+......     .......-..+|..+..+|.+.|++++|++.+++..+..   + ..
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~-----~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQK-----KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            56778889999999999999988743200     000111234688999999999999999999999776521   1 11


Q ss_pred             ccHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh--
Q 037499           85 PEEIIFCNVISFYGR-ARLLEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA--  156 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--  156 (262)
                      ....++..+...|.. .|++++|++.|++..+.    +.++ ...++..+...+...|++++|+..|+++....+.+.  
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            224556677777754 69999999999987542    2122 134678889999999999999999999877654221  


Q ss_pred             -----hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-Cc---hHHHHHHHHHHHh--hCCHHHHHHHHHHHH
Q 037499          157 -----CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PT---LVTFGTLIYGLCL--ELRVDEALKLKEDMM  218 (262)
Q Consensus       157 -----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~---~~~~~~li~~~~~--~g~~~~a~~~~~~~~  218 (262)
                           ..+...+..+...|+++.|...+++..+.... ++   ......++.++..  .+.+++|+..|+++.
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence                 23445666777899999999999998875321 11   2244556666554  245788888776543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=1.8e-09  Score=82.08  Aligned_cols=203  Identities=11%  Similarity=-0.020  Sum_probs=148.4

Q ss_pred             hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCccHHHHH-HHH
Q 037499           18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM--FDEVQQILHQLKHDTRVVPEEIIFC-NVI   94 (262)
Q Consensus        18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~-~l~   94 (262)
                      ..|++++|+..++...           ...+.+...|..+..++...++  +++|+..+..+.+..  +++...+. ...
T Consensus        85 ~~~~~~~al~~~~~~l-----------~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~  151 (334)
T d1dcea1          85 SAALVKAELGFLESCL-----------RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRF  151 (334)
T ss_dssp             HHHHHHHHHHHHHHHH-----------HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----------HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHH
Confidence            3455889999999883           3455588888888888887765  789999999998853  45566554 455


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH------------------------------HHH
Q 037499           95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM------------------------------TDL  144 (262)
Q Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a------------------------------~~~  144 (262)
                      ..+...+.++.|++.++.+.+.+ +-+..+|+.+..++.+.|++++|                              ...
T Consensus       152 ~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~  230 (334)
T d1dcea1         152 VAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF  230 (334)
T ss_dssp             HHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHH
Confidence            77778899999999999999886 66788898888888887765433                              222


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 037499          145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK  224 (262)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  224 (262)
                      +.......+++...+..++..+...+++++|...+.+..... +.+..++..+..++...|++++|++.++++.+.   .
T Consensus       231 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l---d  306 (334)
T d1dcea1         231 YHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV---D  306 (334)
T ss_dssp             HHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH---C
T ss_pred             HHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C
Confidence            222223333444445556667777889999999999888763 225667888889999999999999999999865   6


Q ss_pred             CC-HHHHHHHHHHHH
Q 037499          225 PD-AQVFASLIKGLC  238 (262)
Q Consensus       225 p~-~~~~~~l~~~~~  238 (262)
                      |+ ...|..|...+.
T Consensus       307 P~~~~y~~~L~~~~~  321 (334)
T d1dcea1         307 PMRAAYLDDLRSKFL  321 (334)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHh
Confidence            64 445555554444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.89  E-value=1.9e-08  Score=63.53  Aligned_cols=90  Identities=4%  Similarity=-0.056  Sum_probs=55.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499           56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC  135 (262)
Q Consensus        56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  135 (262)
                      .+...+.+.|++++|+..|++..+..  |-+..+|..+..++.+.|++++|+..|++..+.. |.+..+|..+..+|...
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence            34555666666666666666666542  3345666666666666666666666666666554 44556666666666666


Q ss_pred             CCHHHHHHHHHHH
Q 037499          136 GKIDRMTDLFQIM  148 (262)
Q Consensus       136 g~~~~a~~~~~~~  148 (262)
                      |++++|++.+++.
T Consensus        98 g~~~~A~~~l~~~  110 (112)
T d1hxia_          98 HNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            6666666666553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.1e-07  Score=63.19  Aligned_cols=111  Identities=9%  Similarity=-0.061  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499           53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM  132 (262)
Q Consensus        53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  132 (262)
                      .+......+.+.|++++|+..|.+..+.....+..               ...-......+       ...+|+.+..+|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~---------------~~~~~~~~~~~-------~~~~~~nla~~y   72 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF---------------SNEEAQKAQAL-------RLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC---------------CSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc---------------chHHHhhhchh-------HHHHHHHHHHHH
Confidence            44455667777777888877777766532111110               00000000000       112455566666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      .+.|++++|+..++......|.++.+|..+..+|...|++++|...|+...+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            67777777777777766666666666777777777777777777777776664

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.9e-06  Score=64.85  Aligned_cols=201  Identities=11%  Similarity=-0.006  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC----CCC-
Q 037499           51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE-----EIIFCNVISFYGRARLLEHALQVFDEMSSFN----VQR-  120 (262)
Q Consensus        51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-  120 (262)
                      ..........+...|++++|++++++..+..  +.+     ...+..+..++...|++++|++.|++..+..    ..+ 
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3445556677889999999999999988742  222     3467778899999999999999999876531    111 


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C---C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC
Q 037499          121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----S---P-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQ  188 (262)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~  188 (262)
                      ...++..+...+...|++..+...+.......    .   + ....+..+...+...|+++.+...+.......    ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence            13456667788899999999999988765421    1   1 12355667788899999999999998887642    22


Q ss_pred             CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-----DAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       189 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      .....+......+...++...+...+.+.........     ....+..+...+...|+.++|...+.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  239 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  239 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            2334455555667777888777777766544311111     1122333344445555555555555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.83  E-value=4.5e-08  Score=61.68  Aligned_cols=92  Identities=10%  Similarity=-0.056  Sum_probs=84.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499           91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus        91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ..+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++.....+.+...|..+...|...|
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            345677889999999999999999876 6678999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHH
Q 037499          171 RLEDAWKVFDEML  183 (262)
Q Consensus       171 ~~~~a~~~~~~m~  183 (262)
                      ++++|.+.+++..
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6e-08  Score=61.99  Aligned_cols=91  Identities=13%  Similarity=0.002  Sum_probs=38.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CC-hhHHHHHHHHHH
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK---IDRMTDLFQIMEKYVS-PD-ACSYNILMHGCV  167 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~-~~-~~~~~~l~~~~~  167 (262)
                      +++.+...+++++|.+.|++..+.+ +.+..++..+..++.++++   +++|+.+|+++....+ ++ ..+|..+..+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3344444444444444444444443 3344444444444443322   2234444444443332 11 123444444444


Q ss_pred             hcCChhHHHHHHHHHHH
Q 037499          168 VSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       168 ~~g~~~~a~~~~~~m~~  184 (262)
                      +.|++++|.+.|+++.+
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            44444444444444444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.9e-08  Score=61.70  Aligned_cols=100  Identities=15%  Similarity=0.136  Sum_probs=83.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCch-HHHHHHHHHH
Q 037499          126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL---EDAWKVFDEMLKRRLQPTL-VTFGTLIYGL  201 (262)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~-~~~~~li~~~  201 (262)
                      ..+++.+...+++++|.+.|+.....++.+..++..+..++.+.++.   ++|+.+|+++...+..|+. .++..+..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45778888999999999999999999999999999999999876554   5699999998876544442 4677788899


Q ss_pred             HhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499          202 CLELRVDEALKLKEDMMRVYNVKPDAQ  228 (262)
Q Consensus       202 ~~~g~~~~a~~~~~~~~~~~~~~p~~~  228 (262)
                      .+.|++++|++.|+++.+.   .|+..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~---~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT---EPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHh---CcCCH
Confidence            9999999999999999875   56543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.2e-06  Score=59.44  Aligned_cols=128  Identities=10%  Similarity=-0.021  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      .+......+.+.|++++|+..|.+..+.. +....             ..+........+      -..+|+.+..+|.+
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~-------------~~~~~~~~~~~~------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESS-------------FSNEEAQKAQAL------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCC-------------CCSHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccc-------------cchHHHhhhchh------HHHHHHHHHHHHHh
Confidence            44556677888888888888888776542 11100             000011111111      12467888999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc
Q 037499          169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAV  240 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  240 (262)
                      .|++++|+..++..++... .+...+..+..+|...|++++|+..|++..+.   .| |......+-.+..+.
T Consensus        75 ~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHH
Confidence            9999999999999998743 37888999999999999999999999999875   45 555555554444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.71  E-value=1.2e-06  Score=59.24  Aligned_cols=95  Identities=9%  Similarity=0.017  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499          124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL  203 (262)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  203 (262)
                      +|+.+..+|.+.|++++|+..++......+.+...|..+..++...|++++|...|++..+..+ .+......+-....+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            4556666777777777777777777777677777777777777777777777777777776532 233344444333333


Q ss_pred             hCCHH-HHHHHHHHHHH
Q 037499          204 ELRVD-EALKLKEDMMR  219 (262)
Q Consensus       204 ~g~~~-~a~~~~~~~~~  219 (262)
                      .+... ...+++..|.+
T Consensus       145 ~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         145 AKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHh
Confidence            33332 23444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.69  E-value=6.5e-07  Score=59.58  Aligned_cols=110  Identities=9%  Similarity=-0.054  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499           52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV---PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL  128 (262)
Q Consensus        52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  128 (262)
                      ..+..-+..+.+.|++.+|+..|.+........   ++....                    ....    .....+|+.+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nl   73 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNL   73 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhH
Confidence            345556677788888888888888776531100   111000                    0000    0112356666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499          129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR  185 (262)
Q Consensus       129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  185 (262)
                      ..+|.+.|++++|++.++...+..+.+..+|..+..++...|++++|...|+...+.
T Consensus        74 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            677777777777777777777666666777777777777777777777777777664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.6e-07  Score=57.95  Aligned_cols=58  Identities=9%  Similarity=0.150  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037499           92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK  150 (262)
Q Consensus        92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  150 (262)
                      .+...+.+.|++++|++.|.+.++.+ +.+..++..+..+|.+.|++++|+..++++.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            34444445555555555555544443 33444444444555555555555555544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7.2e-07  Score=57.43  Aligned_cols=60  Identities=10%  Similarity=0.014  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499           54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS  115 (262)
Q Consensus        54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  115 (262)
                      +..+...+.+.|++++|+..|.+..+..  +.+..++..+..+|.+.|++++|++.++++++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3445555556666666666666555532  34455555566666666666666666655544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=1.2e-06  Score=59.34  Aligned_cols=86  Identities=6%  Similarity=-0.111  Sum_probs=60.1

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499          121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG  200 (262)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  200 (262)
                      ....|..+..++.+.|++++|+..+.+..+..+.+...|..+..++.+.|++++|...|+...+... .+......+..+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~  154 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            4456677777788888888888888888777777777888888888888888888888888777532 244455555544


Q ss_pred             HHhhCCH
Q 037499          201 LCLELRV  207 (262)
Q Consensus       201 ~~~~g~~  207 (262)
                      ..+....
T Consensus       155 ~~~l~~~  161 (169)
T d1ihga1         155 KQKIKAQ  161 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4443333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.59  E-value=1.7e-06  Score=58.53  Aligned_cols=83  Identities=13%  Similarity=-0.055  Sum_probs=56.9

Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499          154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL  233 (262)
Q Consensus       154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  233 (262)
                      .....|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|++++|+..|++..+.  -+.+...+..+
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l  151 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            345566777778888888888888888887764 235667777778888888888888888887764  12244555555


Q ss_pred             HHHHHh
Q 037499          234 IKGLCA  239 (262)
Q Consensus       234 ~~~~~~  239 (262)
                      ..+..+
T Consensus       152 ~~~~~~  157 (169)
T d1ihga1         152 LKVKQK  157 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.57  E-value=3.6e-06  Score=55.86  Aligned_cols=125  Identities=10%  Similarity=-0.051  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499           89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV  168 (262)
Q Consensus        89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  168 (262)
                      .+..-...+.+.|++.+|+..|.+....-  +....           ............      ....+|+.+..+|.+
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~-----------~~~~~~~~~~~~------~~~~~~~Nla~~~~~   79 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEE-----------WDDQILLDKKKN------IEISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTT-----------CCCHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhh-----------hhhHHHHHhhhh------HHHHHHhhHHHHHHH
Confidence            34445667778889999998888877531  11000           000000000000      123578889999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 037499          169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKG  236 (262)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~  236 (262)
                      .|++++|++.++...+.+ +.+..+|..+..++...|++++|+..|++..+.   .|+ ..+...+-.+
T Consensus        80 l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l---~P~n~~~~~~l~~~  144 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELC  144 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHH
T ss_pred             hcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence            999999999999999874 347789999999999999999999999999865   554 4444444333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.53  E-value=4.7e-06  Score=56.18  Aligned_cols=59  Identities=14%  Similarity=-0.042  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499          159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM  218 (262)
Q Consensus       159 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  218 (262)
                      |+.+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|...|+++.
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444445555555555555555554432 2234444444455555555555555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=4.4e-06  Score=56.93  Aligned_cols=71  Identities=13%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCchHH
Q 037499          123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK-----RRLQPTLVT  193 (262)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~  193 (262)
                      ..+..+..++.+.|++++|+..++++....+.+...|..++.+|.+.|+.++|++.|+++.+     .|+.|+..+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            34556666666777777777777777666666677777777777777777777777666533     366665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.42  E-value=5.8e-07  Score=65.38  Aligned_cols=121  Identities=10%  Similarity=0.000  Sum_probs=56.6

Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037499           99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV  178 (262)
Q Consensus        99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  178 (262)
                      +.|++++|+..+++..+.. |.+...+..+...|+..|++++|...|+...+..+.+...+..+...+...+..+++..-
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            4455666666666555554 445555555666666666666666666655554444444444443333322222221111


Q ss_pred             HHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       179 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      .......+.+++...+......+...|+.++|...++++.+.
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            111001111122223333344455566666666666665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.38  E-value=3.6e-06  Score=55.26  Aligned_cols=128  Identities=13%  Similarity=0.072  Sum_probs=75.0

Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499           97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC----------GKIDRMTDLFQIMEKYVSPDACSYNILMHGC  166 (262)
Q Consensus        97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  166 (262)
                      |-+.+.+++|++.|+...+.. |.+..++..+..+|...          +.+++|+..|++..+..|.+..+|..+..+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            445566777777777777665 55666676666666543          3345566666666665555555666555555


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 037499          167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA  246 (262)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  246 (262)
                      ...|++.               ++..         ...+.+++|.+.|++..+.   .|+...|...+..+      .+|
T Consensus        86 ~~~g~~~---------------~~~~---------~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~------~ka  132 (145)
T d1zu2a1          86 TSFAFLT---------------PDET---------EAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT------AKA  132 (145)
T ss_dssp             HHHHHHC---------------CCHH---------HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH------HTH
T ss_pred             HHcccch---------------hhHH---------HHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH------HHH
Confidence            4433211               0000         0123467788888888754   67666665544433      456


Q ss_pred             HHHHHHHHHcCC
Q 037499          247 LGFKEEMVRNKI  258 (262)
Q Consensus       247 ~~~~~~m~~~g~  258 (262)
                      .+++.+..+.|+
T Consensus       133 ~~~~~e~~k~~~  144 (145)
T d1zu2a1         133 PQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHSSS
T ss_pred             HHHHHHHHHHhc
Confidence            777777777664

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=2.3e-06  Score=56.30  Aligned_cols=75  Identities=11%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499           60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA----------RLLEHALQVFDEMSSFNVQRTVKSFNTLL  129 (262)
Q Consensus        60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  129 (262)
                      .|-+.+.+++|+..|+...+..  |.+..++..+..++...          +.+++|++.|++..+.. |.+..+|..+.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG   82 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG   82 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHH
Confidence            3567788999999999999864  77788888888888754          45688999999999876 67788999998


Q ss_pred             HHHHhcCC
Q 037499          130 NAMLTCGK  137 (262)
Q Consensus       130 ~~~~~~g~  137 (262)
                      .+|...|+
T Consensus        83 ~~y~~~g~   90 (145)
T d1zu2a1          83 NAYTSFAF   90 (145)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHccc
Confidence            88877653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.34  E-value=2.9e-05  Score=52.76  Aligned_cols=124  Identities=10%  Similarity=-0.009  Sum_probs=83.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499           93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL  172 (262)
Q Consensus        93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  172 (262)
                      ........|++++|.+.|.+.....  +....        ......+.+...-..+..   .....+..++..+.+.|++
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~---~~~~a~~~la~~~~~~g~~   83 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE---DKVLAHTAKAEAEIACGRA   83 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH---HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCc
Confidence            4456677788888888888877642  22211        111111111111111211   2345677888889999999


Q ss_pred             hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hcCCCCCHHHH
Q 037499          173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----VYNVKPDAQVF  230 (262)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~  230 (262)
                      ++|...++++.... +-+...|..++.+|.+.|+.++|++.|+++.+    ..|+.|+..+-
T Consensus        84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            99999999998874 34778899999999999999999999988743    34888987763

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=0.00028  Score=52.61  Aligned_cols=138  Identities=9%  Similarity=0.060  Sum_probs=77.9

Q ss_pred             CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499            2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT   81 (262)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   81 (262)
                      ..||......++..|.+.|.++.|..+|..+.                   -|..++..+.+.++++.|.+++....   
T Consensus        10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-------------------d~~rl~~~~v~l~~~~~avd~~~k~~---   67 (336)
T d1b89a_          10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------------------NFGRLASTLVHLGEYQAAVDGARKAN---   67 (336)
T ss_dssp             TCC----------------CTTTHHHHHHHTT-------------------CHHHHHHHHHTTTCHHHHHHHHHHHT---
T ss_pred             cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-------------------CHHHHHHHHHhhccHHHHHHHHHHcC---
Confidence            44566666777888888889988888888772                   25567777788888888877765442   


Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                          +..+|..+...+.+......|     .+.......+......++..|-..|.+++...+++........+...++.
T Consensus        68 ----~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~  138 (336)
T d1b89a_          68 ----STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE  138 (336)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred             ----CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHH
Confidence                345666667777666555432     12222223344445567777777777777777777665444466666777


Q ss_pred             HHHHHHhcC
Q 037499          162 LMHGCVVSR  170 (262)
Q Consensus       162 l~~~~~~~g  170 (262)
                      ++..|++.+
T Consensus       139 L~~lyak~~  147 (336)
T d1b89a_         139 LAILYSKFK  147 (336)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhC
Confidence            777777654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.8e-06  Score=68.83  Aligned_cols=137  Identities=6%  Similarity=-0.155  Sum_probs=81.0

Q ss_pred             hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499           18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY   97 (262)
Q Consensus        18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (262)
                      ..+.++.|+..++....           ..+++...+..+...+.+.|+.+.|...+.......    ...++..+...+
T Consensus        98 a~~~Y~~ai~~l~~~~~-----------l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~LG~l~  162 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFN-----------VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----CQHCLVHLGDIA  162 (497)
T ss_dssp             HHHHHHHHHHHHTC------------------------------------------CCHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHC-----------CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHH
Confidence            45667777777776532           233456677777788888888888887776665421    234667788888


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499           98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR  170 (262)
Q Consensus        98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  170 (262)
                      ...+++++|+..|++..+.. |-+...|+.+...+...|+..+|+..|.+.....+|...++..+...+.+..
T Consensus       163 ~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         163 RYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            88888888988888888775 5566788888888888888888888888888877788888888887776544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.8e-06  Score=68.91  Aligned_cols=116  Identities=9%  Similarity=0.010  Sum_probs=71.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499           85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH  164 (262)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  164 (262)
                      ++...+..+...+.+.|+.+.|...+.......   ...++..+...+...|++++|+..|++.....|.+...|+.+..
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~  194 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI  194 (497)
T ss_dssp             -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            445566777777788888888888777665432   13567778888888999999999999998888888889999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh
Q 037499          165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE  204 (262)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  204 (262)
                      .+...|+..+|...|.+..... +|...++..|...+.+.
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence            9999999999999999888764 45677777777766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.24  E-value=1.9e-06  Score=62.64  Aligned_cols=122  Identities=10%  Similarity=-0.030  Sum_probs=86.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHH
Q 037499          132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEA  210 (262)
Q Consensus       132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a  210 (262)
                      ..+.|++++|+..+++..+..|.|...+..++..++..|++++|...|+...+..  |+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence            4577999999999999999999999999999999999999999999999999863  43 34444444444433433333


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ..-...... .+-+++...+......+...|+.++|.++++++.+.
T Consensus        84 ~~~~~~~~~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhc-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            221111100 011122334445566788899999999999998774

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.23  E-value=0.00033  Score=50.40  Aligned_cols=194  Identities=12%  Similarity=0.028  Sum_probs=134.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSF  125 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  125 (262)
                      |+..+..+...+.+.+++++|++.|++..+. |   +...+..|...|..    ..+...|..++....+.+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            4667788888999999999999999999875 3   55666677777776    668999999999988866   23344


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHH
Q 037499          126 NTLLNAMLT----CGKIDRMTDLFQIMEKYVSPDACSYNILMHG--CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY  199 (262)
Q Consensus       126 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  199 (262)
                      ..+...+..    ..+.+.|...++.....+.+...........  .........+...+......+   +...+..+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~  150 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  150 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence            444444433    5678899999998877655433322222222  123445667777777766643   5666777777


Q ss_pred             HHHh----hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 037499          200 GLCL----ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNK  257 (262)
Q Consensus       200 ~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g  257 (262)
                      .+..    ..+...+..+++...+.    .+......+...|..    ..+.++|..+|.+..+.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g  212 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  212 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence            7765    45677788888777653    355566666656655    568899999999887766

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.06  E-value=4.1e-05  Score=50.67  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             HHHHH--HHHHHhcCChhHHHHHHHHHHhcCCCCc----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           53 HYDLI--ITKLGRAKMFDEVQQILHQLKHDTRVVP----------EEIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        53 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      +|..+  ...+.+.|++++|+..|++..+...-.|          ...+|+.+..+|.+.|++++|.+.+++..
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            44444  3444455666666666666654211111          12345555555666666666555555544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.02  E-value=0.00011  Score=48.48  Aligned_cols=89  Identities=17%  Similarity=0.094  Sum_probs=52.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCC--CC----------hhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCc---
Q 037499          131 AMLTCGKIDRMTDLFQIMEKYVS--PD----------ACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----RLQPT---  190 (262)
Q Consensus       131 ~~~~~g~~~~a~~~~~~~~~~~~--~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~~~---  190 (262)
                      .+.+.|++++|+..|++.....+  |+          ...|+.+..+|.+.|++++|...+++....     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            33444555555555555443222  11          245666677777777777777776666542     11111   


Q ss_pred             --hHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499          191 --LVTFGTLIYGLCLELRVDEALKLKEDMMR  219 (262)
Q Consensus       191 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~  219 (262)
                        ...+..+..+|...|++++|+..|++..+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              22456677788888888888888887654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.3e-05  Score=45.90  Aligned_cols=72  Identities=10%  Similarity=-0.054  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499           90 FCNVISFYGRARLLEHALQVFDEMSSFN-----VQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI  161 (262)
Q Consensus        90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  161 (262)
                      +..+...+.+.|++++|+.+|++..+..     ..+ ...++..+..++.+.|++++|+..++++.+..|.+..+++.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            3344555555555555555555443321     001 12344555555555555555555555555544444444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.00017  Score=43.16  Aligned_cols=78  Identities=6%  Similarity=-0.044  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499           50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-----RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS  124 (262)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  124 (262)
                      +...+..+...+.+.|+++.|+..|++..+..     .......++..+..++.+.|++++|++.++++.+.. |-+..+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence            45566788999999999999999999887632     111235789999999999999999999999999875 445566


Q ss_pred             HHHH
Q 037499          125 FNTL  128 (262)
Q Consensus       125 ~~~l  128 (262)
                      ++.+
T Consensus        83 ~~Nl   86 (95)
T d1tjca_          83 NGNL   86 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.88  E-value=0.0023  Score=47.60  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=60.0

Q ss_pred             CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499            8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE   87 (262)
Q Consensus         8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (262)
                      .+..++..+.+.++++.|.++++..                -+..+|..+...+.+......+.-     ... ....++
T Consensus        42 d~~rl~~~~v~l~~~~~avd~~~k~----------------~~~~~~k~~~~~l~~~~e~~la~i-----~~~-~~~~~~   99 (336)
T d1b89a_          42 NFGRLASTLVHLGEYQAAVDGARKA----------------NSTRTWKEVCFACVDGKEFRLAQM-----CGL-HIVVHA   99 (336)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH----------------TCHHHHHHHHHHHHHTTCHHHHHH-----TTT-TTTTCH
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHHc----------------CCHHHHHHHHHHHHhCcHHHHHHH-----HHH-HhhcCH
Confidence            4566777777777777777777654                145566666666666554433211     111 122334


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499           88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG  136 (262)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  136 (262)
                      .....++..|...|.+++...+++...... ..+...++.++.+|++.+
T Consensus       100 d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_         100 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence            444556666666666666666666654332 344555666666666543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.37  E-value=0.005  Score=38.00  Aligned_cols=141  Identities=12%  Similarity=0.123  Sum_probs=84.9

Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH
Q 037499           97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW  176 (262)
Q Consensus        97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  176 (262)
                      +.-.|.+++..+++.+....   .+..-||-++--....-+-+-..++++.+-+.  .|.          ..+++.....
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~--FDl----------s~C~Nlk~vv   76 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--FDL----------DKCQNLKSVV   76 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--SCG----------GGCSCTHHHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh--cCc----------hhhhcHHHHH
Confidence            34457777777777777653   34445555555555555555555555555432  222          1233333333


Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499          177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN  256 (262)
Q Consensus       177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  256 (262)
                      ..+-.+-     -+...+...+.....+|+-+.-.+++..+.+  .-.|++.....+..+|.+.|...++.+++.+..+.
T Consensus        77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            3332221     1344556666777778888877777777655  44667777777778888888888888888888777


Q ss_pred             CCC
Q 037499          257 KIE  259 (262)
Q Consensus       257 g~~  259 (262)
                      |++
T Consensus       150 G~K  152 (161)
T d1wy6a1         150 GEK  152 (161)
T ss_dssp             TCH
T ss_pred             hHH
Confidence            753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.79  E-value=0.024  Score=35.61  Aligned_cols=15  Identities=27%  Similarity=0.476  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHhhcC
Q 037499          103 LEHALQVFDEMSSFN  117 (262)
Q Consensus       103 ~~~a~~~~~~~~~~~  117 (262)
                      +++|+++|++..+.|
T Consensus         9 ~~~A~~~~~kaa~~g   23 (133)
T d1klxa_           9 LKKAIQYYVKACELN   23 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            444444444444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.69  E-value=0.029  Score=35.20  Aligned_cols=112  Identities=11%  Similarity=-0.062  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHH
Q 037499          137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALK  212 (262)
Q Consensus       137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~  212 (262)
                      ++++|++.|++.-+.+.+  ..+..+.  .....+.++|...+++..+.|   +......|...|..    ..+.++|.+
T Consensus         8 d~~~A~~~~~kaa~~g~~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHH
Confidence            678899999988776543  3333343  345578899999999998876   44555556555554    457899999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 037499          213 LKEDMMRVYNVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNKIE  259 (262)
Q Consensus       213 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~  259 (262)
                      +|++..+. +   ++.....|...|..    ..+.++|.++|++..+.|..
T Consensus        81 ~~~~aa~~-g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          81 YYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHhhhhcc-C---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            99999774 3   44455556666665    45899999999999888753

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.043  Score=33.80  Aligned_cols=70  Identities=11%  Similarity=-0.001  Sum_probs=44.8

Q ss_pred             CChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499          154 PDACSYNILMHGCVVSR---RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD  226 (262)
Q Consensus       154 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~  226 (262)
                      ++..+--...-++++..   +.++++.+|+...+.+..-....+-.|.-+|.+.|++++|.+.++.+.+.   .|+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i---eP~  105 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERN  105 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc---CCC
Confidence            55555555555665554   44678888888776532111234455666788888888888888888754   554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.71  E-value=0.079  Score=30.81  Aligned_cols=63  Identities=11%  Similarity=0.121  Sum_probs=44.5

Q ss_pred             ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499          171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK  235 (262)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  235 (262)
                      +.-+..+-++.+......|++.+..+.+++|.+.+++..|+++|+.+....+  ++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            3345666666776777788888888888888888888888888888876432  33446665553

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.69  E-value=0.1  Score=32.08  Aligned_cols=138  Identities=13%  Similarity=0.077  Sum_probs=70.1

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 037499           61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR  140 (262)
Q Consensus        61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  140 (262)
                      +.-.|.+++..+++.+.....    +..-|+-+|--....-+-+-..++++.+-+.   -|..          .+++...
T Consensus        12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHH
Confidence            445689999999999988753    3344555555555556666677777666442   1111          1112222


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499          141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV  220 (262)
Q Consensus       141 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  220 (262)
                      ....+-.+-    .+...+...++...+.|.-++-.++++.+.+. -+|++...-.+..+|.+.|...++-+++.+..+.
T Consensus        75 vv~C~~~~n----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          75 VVECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            222111111    22333344444555555555555555554443 2344445555555555555555555555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.34  Score=29.66  Aligned_cols=47  Identities=13%  Similarity=0.074  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499          138 IDRMTDLFQIMEKYVSPD-ACSYNILMHGCVVSRRLEDAWKVFDEMLK  184 (262)
Q Consensus       138 ~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  184 (262)
                      .++++.+|+.+.+..+.+ ...+..+..+|.+.|++++|.+.++.+.+
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            345555555554433322 23444455555555555555555555555

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.62  E-value=0.33  Score=28.16  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499           69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS  114 (262)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  114 (262)
                      +..+-++.+... .+.|++.+..+.+++|-+.+++..|.++|+..+
T Consensus        24 e~rrgmN~l~~~-DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          24 ELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444443 344555555555555555555555555554444

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.46  E-value=1.7  Score=26.62  Aligned_cols=64  Identities=13%  Similarity=0.127  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCC
Q 037499          125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL--EDAWKVFDEMLKRRLQ  188 (262)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~~~~  188 (262)
                      ...++.-|...|+.++|...++++.........++..+..+.-+.+.-  +.+.+++..+...|+-
T Consensus        10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~i   75 (129)
T d2nsza1          10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI   75 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCC
Confidence            455666777777777777777766432112233444444444444433  2345566777666543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=84.19  E-value=6.8  Score=29.46  Aligned_cols=183  Identities=7%  Similarity=-0.052  Sum_probs=115.2

Q ss_pred             CChhHHHHHHHHHHhcCCCCccHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499           65 KMFDEVQQILHQLKHDTRVVPEEII--FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT  142 (262)
Q Consensus        65 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  142 (262)
                      .+.+.+..++..........++...  ...+.......+..+.+..++......+  .+.....-.+......+++..+.
T Consensus       228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~  305 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN  305 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence            4677777777777665333332211  1122223334566777887777766554  33444444555566778999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC------------CCCCc----------hHH-----HH
Q 037499          143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR------------RLQPT----------LVT-----FG  195 (262)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------------~~~~~----------~~~-----~~  195 (262)
                      ..+..+.........-.--+..++...|+.+.|...|......            |.+++          ...     -.
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~  385 (450)
T d1qsaa1         306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM  385 (450)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH
T ss_pred             HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHH
Confidence            8888875443344555566778888999999999999886542            11100          000     01


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499          196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM  253 (262)
Q Consensus       196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  253 (262)
                      .-+..+...|....|...|..+..  .  .+......+.....+.|.++.|+....+.
T Consensus       386 ~ra~~L~~~g~~~~A~~e~~~l~~--~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         386 ARVRELMYWNLDNTARSEWANLVK--S--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHT--T--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHh--C--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            224556778999999998888865  2  24556667777788899999888766554

>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}

class: All alpha proteins
fold: Ribbon-helix-helix
superfamily: Ribbon-helix-helix
family: Arc/Mnt-like phage repressors
domain: Arc repressor
species: Salmonella bacteriophage P22 [TaxId: 10754]

Probab=84.09  E-value=0.96  Score=19.58  Aligned_cols=33  Identities=9%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499          210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE  242 (262)
Q Consensus       210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  242 (262)
                      .+.+..+..+..|...|...|..++..+.+.|+
T Consensus         3 vldlvrkvaeeng~s~ns~iy~~vmes~kkegr   35 (36)
T d1u9pa1           3 VLDLVRKVAEENGRSVNSEIYQRVMESFKKEGR   35 (36)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCcchhHHHHHHHHHHHHHccC
Confidence            344444544444666677777777777666654

>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}

class: All alpha proteins
fold: Methionine synthase domain-like
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Pectobacterium carotovorum [TaxId: 554]

Probab=80.36  E-value=2.7  Score=22.25  Aligned_cols=63  Identities=16%  Similarity=0.112  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhhC--CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499          194 FGTLIYGLCLEL--RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI  258 (262)
Q Consensus       194 ~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  258 (262)
                      |..++.-....+  ..+++..+++.+..  |-.++...-..|+....+.-..++...+.+-|++.+.
T Consensus         2 ~~~il~kl~~g~~Ls~ee~~~~~~~i~~--g~~~d~qiaafL~al~~kg~t~dEi~g~~~am~~~~~   66 (69)
T d1khda1           2 HQPILEKLFKSQSMTQEESHQLFAAIVR--GELEDSQLAAALISMKMRGERPEEIAGAASALLADAQ   66 (69)
T ss_dssp             CHHHHHHHHTTCCCCHHHHHHHHHHHTT--TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence            334444444333  34566667766664  4444555444444444555566666666777766654