Citrus Sinensis ID: 037537
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M2Y7 | 721 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.938 | 0.619 | 0.0 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.970 | 0.835 | 0.379 | 1e-135 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.988 | 0.900 | 0.356 | 1e-130 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.892 | 0.610 | 0.397 | 1e-127 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.893 | 0.733 | 0.384 | 1e-127 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.918 | 0.716 | 0.365 | 1e-126 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.960 | 0.832 | 0.365 | 1e-125 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.890 | 0.692 | 0.385 | 1e-122 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.968 | 0.830 | 0.341 | 1e-121 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.893 | 0.608 | 0.406 | 1e-121 |
| >sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/712 (61%), Positives = 536/712 (75%), Gaps = 35/712 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TFR +L V RDL TGKSLHALY+K++V S YLSNHF+ LYSKCG LS A AF T
Sbjct: 10 TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
+ NVFS+NV++ AYA+ +I ARQLFD+IPQPD VSYNTLIS YAD +T +A+ LFK
Sbjct: 70 EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
MR+ F+ DGFTLSGLI A + + LIKQLHC ++ GFD Y+SVNN+ +T YS+ G L
Sbjct: 130 RMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLL 189
Query: 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240
EA VFY M E++DEVSWNSM+VAYGQH+EG +AL L++EM+ +DM+TLAS+L A
Sbjct: 190 REAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249
Query: 241 FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG--DMRDCMKVFEEIPQPDL 298
TSL+ L+GG QFH LIK+GFHQNSH+GSGLID Y+KC G M D KVF+EI PDL
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDL 309
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHA 357
V+WNTMISGYS EE S++A+ F+++ R+G+ PDDCSFVCV SACSNL SPS KQIH
Sbjct: 310 VVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHG 369
Query: 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGM 417
L IK I SNRISVNNAL+++Y K GNL+DAR +FDRMPE N VS N MI GYAQHG G
Sbjct: 370 LAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGT 429
Query: 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477
EAL L++ ML++ I P ITFV+VLSACAH GKV EGQ+YF+ MK+ F EPE EHYSCM
Sbjct: 430 EALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCM 489
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSIAL-----------------KAANHFLQLEPSNA 520
IDLLGRAGKL +AER I+AMP+ PGS+A +AAN + ++P A
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAA 549
Query: 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIK 580
PYVMLAN+YA + KWEE+A++R+ MR + ++KKPG SWIEVKK+ HVFVAED SHPMI+
Sbjct: 550 TPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIR 609
Query: 581 EIHNYLEEMSRKMKQAGYVPDKE---------------KRLVHHSEKLAVAFGLLSTSYG 625
E++ YLEEM +KMK+ GYV DK+ RL HHSEKLAVAFGL+ST G
Sbjct: 610 EVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDG 669
Query: 626 EPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
E ++V+KNLRICGDCHNAIKF+SA+AGREI VRD RFHCFKDG+CSCGDYW
Sbjct: 670 EELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust.
Identities = 288/759 (37%), Positives = 408/759 (53%), Gaps = 102/759 (13%)
Query: 17 TGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYA 76
T + +H +K+ + FS YL N+ + +YSK G A F++ FS+N +L+AY+
Sbjct: 32 TAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYS 91
Query: 77 RQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSG 136
++ + S + FDQ+PQ D VS+ T+I Y + G A+ + DM ++ + FTL+
Sbjct: 92 KRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTN 151
Query: 137 LITASSNNLCLI--KQLHCLAIYCGFDHYASVNNSLLTCYSR------------------ 176
++ + + C+ K++H + G SV+NSLL Y++
Sbjct: 152 VLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRD 211
Query: 177 -------------NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMV 223
G +D A F +M E +D V+WNSM+ + Q L AL +F +M+
Sbjct: 212 ISSWNAMIALHMQVGQMDLAMAQFEQMAE-RDIVTWNSMISGFNQRGYDLRALDIFSKML 270
Query: 224 SLQL-GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG- 281
L D +TLAS+L+A +LE L G Q H+H++ +GF + + + LI +Y++C G
Sbjct: 271 RDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330
Query: 282 -------------------------------DMRDCMKVFEEIPQPDLVLWNTMISGYSQ 310
DM +F + D+V W MI GY Q
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390
Query: 311 KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSL-GKQIHALTIKI-EIRSNR 368
Y +A+ F+ + G P+ + ++S S+L+ GKQIH +K EI S
Sbjct: 391 HGSYG-EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS-- 447
Query: 369 ISVNNALVAMYSKCGNLEDARRLFDRMP-EHNTVSLNSMIAGYAQHGIGMEALRLFEWML 427
+SV+NAL+ MY+K GN+ A R FD + E +TVS SMI AQHG EAL LFE ML
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507
Query: 428 ETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL 487
+ P +IT+V V SAC H G V +G++YF MMKD+ P HY+CM+DL GRAG L
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 488 TDAERLIEAMPFNPGSIALK-----------------AANHFLQLEPSNAVPYVMLANIY 530
+A+ IE MP P + AA L LEP N+ Y LAN+Y
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLY 627
Query: 531 AASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMS 590
+A GKWEE A IR+ M+D V+K+ GFSWIEVK ++HVF EDG+HP EI+ ++++
Sbjct: 628 SACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIW 687
Query: 591 RKMKQAGYVPD------------KEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLRICG 638
++K+ GYVPD KE+ L HHSEKLA+AFGL+ST + +MKNLR+C
Sbjct: 688 DEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCN 747
Query: 639 DCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
DCH AIKFIS + GREI VRDT RFH FKDG CSC DYW
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 263/737 (35%), Positives = 400/737 (54%), Gaps = 68/737 (9%)
Query: 6 LKTCVG---RRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH 62
+K C+G R K +H ++ L +L N+ + Y+ + A F++
Sbjct: 10 IKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ 69
Query: 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDM 122
N+FS+N LL AY++ I+ F+++P D V++N LI Y+ G +A+ + M
Sbjct: 70 PNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 129
Query: 123 -REKRFDTDGFTLSGLITASSNN--LCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGF 179
R+ + TL ++ SS+N + L KQ+H I GF+ Y V + LL Y+ G
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC 189
Query: 180 LDEAKRVFYEM-----------------------------GEIKDEVSWNSMVVAYGQHR 210
+ +AK+VFY + G KD VSW +M+ Q+
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNG 249
Query: 211 EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGS 270
EA++ F+EM L +D Y S+L A L + G Q HA +I++ F + ++GS
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309
Query: 271 GLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330
LID+Y KC + VF+ + Q ++V W M+ GY Q +++A+ F + R G
Sbjct: 310 ALIDMYCKCKC-LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR-AEEAVKIFLDMQRSGI 367
Query: 331 HPDDCSFVCVISACSNLSP-SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDAR 389
PD + ISAC+N+S G Q H I + + ++V+N+LV +Y KCG+++D+
Sbjct: 368 DPDHYTLGQAISACANVSSLEEGSQFHGKAITSGL-IHYVTVSNSLVTLYGKCGDIDDST 426
Query: 390 RLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449
RLF+ M + VS +M++ YAQ G +E ++LF+ M++ + P +T V+SAC+ G
Sbjct: 427 RLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAG 486
Query: 450 KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALK-- 507
V +GQ+YF +M +G P HYSCMIDL R+G+L +A R I MPF P +I
Sbjct: 487 LVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTL 546
Query: 508 ---------------AANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552
AA ++L+P + Y +L++IYA+ GKW+ VA +RR MR++ V+
Sbjct: 547 LSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVK 606
Query: 553 KKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAGYVPD----------- 601
K+PG SWI+ K ++H F A+D S P + +I+ LEE++ K+ GY PD
Sbjct: 607 KEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEA 666
Query: 602 -KEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDT 660
K K L +HSE+LA+AFGL+ G+PI V KNLR+C DCHNA K IS++ GREI VRD
Sbjct: 667 VKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDA 726
Query: 661 YRFHCFKDGRCSCGDYW 677
RFH FKDG CSCGD+W
Sbjct: 727 VRFHRFKDGTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 255/642 (39%), Positives = 372/642 (57%), Gaps = 38/642 (5%)
Query: 69 NVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFD 128
N L+ Y + + AR +FD + + DL+S+N++I+ A G A+ LF +
Sbjct: 354 NSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLK 413
Query: 129 TDGFTLSGLITASSN---NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKR 185
D +T++ ++ A+S+ L L KQ+H AI + V+ +L+ YSRN + EA+
Sbjct: 414 PDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEI 473
Query: 186 VFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLE 245
+F D V+WN+M+ Y Q +G + L+LF M D +TLA++ L
Sbjct: 474 LFERHN--FDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLF 531
Query: 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMI 305
+ G Q HA+ IKSG+ + + SG++D+Y KC GDM F+ IP PD V W TMI
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC-GDMSAAQFAFDSIPVPDDVAWTTMI 590
Query: 306 SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP-SLGKQIHALTIKIEI 364
SG + E ++A F ++ +G PD+ + + A S L+ G+QIHA +K+
Sbjct: 591 SGCIENGE-EERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNC 649
Query: 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFE 424
+N V +LV MY+KCG+++DA LF R+ N + N+M+ G AQHG G E L+LF+
Sbjct: 650 -TNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFK 708
Query: 425 WMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484
M I P +TF+ VLSAC+H+G V+E K+ M +G +PE EHYSC+ D LGRA
Sbjct: 709 QMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 485 GKLTDAERLIEAMPFNPGS-----------------IALKAANHFLQLEPSNAVPYVMLA 527
G + AE LIE+M + + A L+LEP ++ YV+L+
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 528 NIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLE 587
N+YAA+ KW+E+ R +M+ V+K PGFSWIEVK ++H+FV +D S+ + I+ ++
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVK 888
Query: 588 EMSRKMKQAGYVP------------DKEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLR 635
+M R +KQ GYVP +KE+ L +HSEKLAVAFGLLST PI V+KNLR
Sbjct: 889 DMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLR 948
Query: 636 ICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
+CGDCHNA+K+I+ + REI +RD RFH FKDG CSCGDYW
Sbjct: 949 VCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 247/642 (38%), Positives = 375/642 (58%), Gaps = 37/642 (5%)
Query: 69 NVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFD 128
NVLL +Y R+ A LF++IP+ D V++NTLI+ Y G ++ LF MR+
Sbjct: 188 NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ 247
Query: 129 TDGFTLSGLITA--SSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186
FT SG++ A ++ L +QLH L++ GF ASV N +L YS++ + E + +
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRML 307
Query: 187 FYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLED 246
F EM E+ D VS+N ++ +Y Q + +L F+EM + + A++L+ +L
Sbjct: 308 FDEMPEL-DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS 366
Query: 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMIS 306
L G Q H + + H+G+ L+D+YAKC + +F+ +PQ V W +IS
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM-FEEAELIFKSLPQRTTVSWTALIS 425
Query: 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALTIKIEIR 365
GY QK + L F K+ D +F V+ A ++ S LGKQ+HA I+
Sbjct: 426 GYVQKGLHG-AGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL 484
Query: 366 SNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEW 425
N S + LV MY+KCG+++DA ++F+ MP+ N VS N++I+ +A +G G A+ F
Sbjct: 485 ENVFS-GSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAK 543
Query: 426 MLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG 485
M+E+ + P +++ + VL+AC+H G V +G +YF M ++G P+ +HY+CM+DLLGR G
Sbjct: 544 MIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNG 603
Query: 486 KLTDAERLIEAMPFNPG-----------------SIALKAANHFLQLEP-SNAVPYVMLA 527
+ +AE+L++ MPF P S+A +AA +E +A YV ++
Sbjct: 604 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMS 663
Query: 528 NIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLE 587
NIYAA+G+WE+V +++ MR+RG++K P +SW+EV ++HVF + D +HP EI +
Sbjct: 664 NIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKIN 723
Query: 588 EMSRKMKQAGYVPD------------KEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLR 635
E++ ++++ GY PD K + L +HSE+LAVAF L+ST G PI+VMKNLR
Sbjct: 724 ELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLR 783
Query: 636 ICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
C DCH AIK IS I REITVRDT RFH F +G CSCGDYW
Sbjct: 784 ACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust.
Identities = 254/694 (36%), Positives = 385/694 (55%), Gaps = 72/694 (10%)
Query: 18 GKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYAR 77
G +H + +KN + + +SN I LY KCG
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCG----------------------------- 243
Query: 78 QLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREK--RFDTDGFTLS 135
+ AR LFD+ +V++N++IS YA G AL +F MR R F
Sbjct: 244 --NVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASV 301
Query: 136 GLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKD 195
+ A+ L +QLHC + GF ++ +L+ YS+ + +A R+F E+G + +
Sbjct: 302 IKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGN 361
Query: 196 EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHA 255
VSW +M+ + Q+ EA+ LF EM + + +T + ILTA ++ + HA
Sbjct: 362 VVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP----VISPSEVHA 417
Query: 256 HLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYS 315
++K+ + ++S +G+ L+D Y K G + + KVF I D+V W+ M++GY+Q E +
Sbjct: 418 QVVKTNYERSSTVGTALLDAYVKL-GKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE-T 475
Query: 316 DQALGCFKKLNRVGYHPDDCSFVCVISAC--SNLSPSLGKQIHALTIKIEIRSNRISVNN 373
+ A+ F +L + G P++ +F +++ C +N S GKQ H IK + S+ + V++
Sbjct: 476 EAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSS-LCVSS 534
Query: 374 ALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP 433
AL+ MY+K GN+E A +F R E + VS NSMI+GYAQHG M+AL +F+ M + +
Sbjct: 535 ALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKM 594
Query: 434 TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERL 493
+TF+ V +AC H G V EG+KYF +M P EH SCM+DL RAG+L A ++
Sbjct: 595 DGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 654
Query: 494 IEAMPFNPGSIALK-----------------AANHFLQLEPSNAVPYVMLANIYAASGKW 536
IE MP GS + AA + ++P ++ YV+L+N+YA SG W
Sbjct: 655 IENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDW 714
Query: 537 EEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQA 596
+E A +R+LM +R V+K+PG+SWIEVK + + F+A D SHP+ +I+ LE++S ++K
Sbjct: 715 QERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDL 774
Query: 597 GYVPD------------KEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLRICGDCHNAI 644
GY PD KE L HSE+LA+AFGL++T G P+L++KNLR+CGDCH I
Sbjct: 775 GYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVI 834
Query: 645 KFISAIAGREITVRDTYRFHCF-KDGRCSCGDYW 677
K I+ I REI VRD+ RFH F DG CSCGD+W
Sbjct: 835 KLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/720 (36%), Positives = 401/720 (55%), Gaps = 70/720 (9%)
Query: 15 LVTGKSLHALYLKNLVP-FSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLA 73
+ TG+ AL + +P +S+ N I Y + G A F++ ++ S+NV++
Sbjct: 75 MRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIK 134
Query: 74 AYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFT 133
Y R + AR+LF+ +P+ D+ S+NT++S YA G + A S+F M EK +
Sbjct: 135 GYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194
Query: 134 LSG-----------LITASSNNLCLIKQLHCL--------AIYCGFDHYASVN------- 167
LS ++ S N L+ +CL I + S+N
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALV-SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSW 253
Query: 168 NSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL 227
N+++T Y+++G +DEA+++F E ++D +W +MV Y Q+R EA +LF +M
Sbjct: 254 NTIITGYAQSGKIDEARQLFDE-SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER-- 310
Query: 228 GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCM 287
+ + ++L + E + + L +N + +I YA+C G + +
Sbjct: 311 --NEVSWNAMLAGYVQGERM----EMAKELFDVMPCRNVSTWNTMITGYAQC-GKISEAK 363
Query: 288 KVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL 347
+F+++P+ D V W MI+GYSQ +S +AL F ++ R G + SF +S C+++
Sbjct: 364 NLFDKMPKRDPVSWAAMIAGYSQSG-HSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 348 -SPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSM 406
+ LGKQ+H +K + V NAL+ MY KCG++E+A LF M + VS N+M
Sbjct: 423 VALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTM 481
Query: 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFG 466
IAGY++HG G ALR FE M + P + T V+VLSAC+HTG V +G++YF M +G
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYG 541
Query: 467 FEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGS-----------------IALKAA 509
P +HY+CM+DLLGRAG L DA L++ MPF P + +A AA
Sbjct: 542 VMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAA 601
Query: 510 NHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVF 569
+ +EP N+ YV+L+N+YA+SG+W +V +R MRD+GV+K PG+SWIE++ + H F
Sbjct: 602 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTF 661
Query: 570 VAEDGSHPMIKEIHNYLEEMSRKMKQAGYVP------------DKEKRLVHHSEKLAVAF 617
D HP EI +LEE+ +MK+AGYV +KE+ + +HSE+LAVA+
Sbjct: 662 SVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAY 721
Query: 618 GLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
G++ S G PI V+KNLR+C DCHNAIK+++ I GR I +RD RFH FKDG CSCGDYW
Sbjct: 722 GIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/644 (38%), Positives = 371/644 (57%), Gaps = 41/644 (6%)
Query: 69 NVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFD 128
N L+A Y + R+ SAR++FD++ + D++S+N++I+ Y G E LS+F M +
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293
Query: 129 TDGFTLSGLIT--ASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186
D T+ + A S + L + +H + + F N+LL YS+ G LD AK V
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353
Query: 187 FYEMGEIKDEVSWNSMVVAYGQHREGL--EALQLFQEMVSLQLGLDMYTLASILTAFTSL 244
F EM + + VS+ SM+ Y REGL EA++LF+EM + D+YT+ ++L
Sbjct: 354 FREMSD-RSVVSYTSMIAGYA--REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 410
Query: 245 EDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTM 304
L G + H + ++ + + + L+D+YAKC G M++ VF E+ D++ WNT+
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC-GSMQEAELVFSEMRVKDIISWNTI 469
Query: 305 ISGYSQKEEYSDQALGCFKKL-NRVGYHPDDCSFVCVISACSNLSP-SLGKQIHALTIKI 362
I GYS K Y+++AL F L + PD+ + CV+ AC++LS G++IH ++
Sbjct: 470 IGGYS-KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN 528
Query: 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRL 422
S+R V N+LV MY+KCG L A LFD + + VS MIAGY HG G EA+ L
Sbjct: 529 GYFSDR-HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIAL 587
Query: 423 FEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLG 482
F M + I I+FVS+L AC+H+G V EG ++F++M+ EP EHY+C++D+L
Sbjct: 588 FNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLA 647
Query: 483 RAGKLTDAERLIEAMPFNPGS-----------------IALKAANHFLQLEPSNAVPYVM 525
R G L A R IE MP P + +A K A +LEP N YV+
Sbjct: 648 RTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVL 707
Query: 526 LANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNY 585
+ANIYA + KWE+V +R+ + RG++K PG SWIE+K ++++FVA D S+P + I +
Sbjct: 708 MANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAF 767
Query: 586 LEEMSRKMKQAGYVP------------DKEKRLVHHSEKLAVAFGLLSTSYGEPILVMKN 633
L ++ +M + GY P +KE+ L HSEKLA+A G++S+ +G+ I V KN
Sbjct: 768 LRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKN 827
Query: 634 LRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
LR+CGDCH KF+S + REI +RD+ RFH FKDG CSC +W
Sbjct: 828 LRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/774 (34%), Positives = 417/774 (53%), Gaps = 118/774 (15%)
Query: 12 RRDLVTGKSLHALYLKNLVPFS----AYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFS 67
R L +++H N++ F A++ N I +Y K L+ A F++ + +
Sbjct: 27 RTSLQLARAVHG----NIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIA 82
Query: 68 FNVLLAAYARQLRIASARQLFDQIP--QPDLVSYNTLISAYADCGDTESALSLFKDMREK 125
+++ Y I AR +F++ P D V YN +I+ ++ D SA++LF M+ +
Sbjct: 83 RTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHE 142
Query: 126 RFDTDGFT----LSGL-ITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSR---- 176
F D FT L+GL + A C+ Q H A+ G + SV+N+L++ YS+
Sbjct: 143 GFKPDNFTFASVLAGLALVADDEKQCV--QFHAAALKSGAGYITSVSNALVSVYSKCASS 200
Query: 177 NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHR---------EGL-------------- 213
L A++VF E+ E KDE SW +M+ Y ++ EG+
Sbjct: 201 PSLLHSARKVFDEILE-KDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMIS 259
Query: 214 ---------EALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQ 264
EAL++ + MVS + LD +T S++ A + L G Q HA++++
Sbjct: 260 GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DF 318
Query: 265 NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGY--------------SQ 310
+ H + L+ LY KC G + +FE++P DLV WN ++SGY
Sbjct: 319 SFHFDNSLVSLYYKC-GKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377
Query: 311 KEE----------------YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSL-GK 353
KE+ + ++ L F + R G+ P D +F I +C+ L G+
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437
Query: 354 QIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQH 413
Q HA +KI S+ +S NAL+ MY+KCG +E+AR++F MP ++VS N++IA QH
Sbjct: 438 QYHAQLLKIGFDSS-LSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496
Query: 414 GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEH 473
G G EA+ ++E ML+ I P IT ++VL+AC+H G V +G+KYF M+ ++ P +H
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556
Query: 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGS-----------------IALKAANHFLQLE 516
Y+ +IDLL R+GK +DAE +IE++PF P + + + AA+ L
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616
Query: 517 PSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSH 576
P + Y++L+N++AA+G+WEEVA +R+LMRDRGV+K+ SWIE++ Q+H F+ +D SH
Sbjct: 617 PEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676
Query: 577 PMIKEIHNYLEEMSRKMKQAGYVPD-------------KEKRLVHHSEKLAVAFGLLSTS 623
P + ++ YL+++ ++M++ GYVPD KE L HSEK+AVAFGL+
Sbjct: 677 PEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLP 736
Query: 624 YGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
G I + KNLR CGDCHN +F+S + R+I +RD RFH F++G CSCG++W
Sbjct: 737 PGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/647 (40%), Positives = 376/647 (58%), Gaps = 42/647 (6%)
Query: 69 NVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFD 128
N L+ YA+ IA AR++F + D VS+N++I+ G A+ +K MR
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412
Query: 129 TDGFTLSGLIT--ASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186
FTL ++ AS L +Q+H ++ G D SV+N+L+T Y+ G+L+E +++
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472
Query: 187 FYEMGEIKDEVSWNSMVVAYGQHREGL-EALQLFQEMVSLQLGLDMYTLASILTAFTSLE 245
F M E D+VSWNS++ A + L EA+ F L+ T +S+L+A +SL
Sbjct: 473 FSSMPE-HDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLS 531
Query: 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQP-DLVLWNTM 304
G Q H +K+ + + LI Y KC G+M C K+F + + D V WN+M
Sbjct: 532 FGELGKQIHGLALKNNIADEATTENALIACYGKC-GEMDGCEKIFSRMAERRDNVTWNSM 590
Query: 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP-SLGKQIHALTIKIE 363
ISGY E + +AL + + G D + V+SA ++++ G ++HA +++
Sbjct: 591 ISGYIHNELLA-KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRAC 649
Query: 364 IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLF 423
+ S+ + V +ALV MYSKCG L+ A R F+ MP N+ S NSMI+GYA+HG G EAL+LF
Sbjct: 650 LESD-VVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLF 708
Query: 424 EWM-LETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLG 482
E M L+ PP ++TFV VLSAC+H G + EG K+F M D +G P EH+SCM D+LG
Sbjct: 709 ETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLG 768
Query: 483 RAGKLTDAERLIEAMPFNP-------------------GSIALKAANHFLQLEPSNAVPY 523
RAG+L E IE MP P + KAA QLEP NAV Y
Sbjct: 769 RAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNY 828
Query: 524 VMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIH 583
V+L N+YAA G+WE++ R+ M+D V+K+ G+SW+ +K +H+FVA D SHP I+
Sbjct: 829 VLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIY 888
Query: 584 NYLEEMSRKMKQAGYVP------------DKEKRLVHHSEKLAVAFGLLST-SYGEPILV 630
L+E++RKM+ AGYVP +KE+ L +HSEKLAVAF L + S PI +
Sbjct: 889 KKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRI 948
Query: 631 MKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
MKNLR+CGDCH+A K+IS I GR+I +RD+ RFH F+DG CSC D+W
Sbjct: 949 MKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| 359497290 | 719 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.940 | 0.699 | 0.0 | |
| 147801369 | 719 | hypothetical protein VITISV_037837 [Viti | 0.998 | 0.940 | 0.698 | 0.0 | |
| 356567494 | 722 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.937 | 0.668 | 0.0 | |
| 224129792 | 720 | predicted protein [Populus trichocarpa] | 1.0 | 0.940 | 0.675 | 0.0 | |
| 356526928 | 722 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.937 | 0.660 | 0.0 | |
| 449480927 | 720 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 1.0 | 0.940 | 0.639 | 0.0 | |
| 449457327 | 720 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.940 | 0.639 | 0.0 | |
| 297816218 | 721 | pentatricopeptide repeat-containing prot | 1.0 | 0.938 | 0.627 | 0.0 | |
| 15229194 | 721 | pentatricopeptide repeat-containing prot | 1.0 | 0.938 | 0.619 | 0.0 | |
| 296085749 | 640 | unnamed protein product [Vitis vinifera] | 0.847 | 0.896 | 0.661 | 0.0 |
| >gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/709 (69%), Positives = 573/709 (80%), Gaps = 33/709 (4%)
Query: 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQ 61
FR +LKTC+ RDL TGKSLH+LY+K+ +P S Y SNHFILLYSKCG L+ A AF
Sbjct: 11 FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70
Query: 62 HANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKD 121
NVFSFN ++AAYA++ R A QLFDQIP+PDLVSYNTLISAYADCG+T AL LF
Sbjct: 71 DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130
Query: 122 MREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181
MRE D DGFTLS +ITA +++ LI QLH +A+ GFD Y SVNN+LLT Y +NG LD
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190
Query: 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241
+AKRVFY MG I+DEVSWNSM+VAYGQH+EG +AL LFQEMV L +DM+TLAS+LTAF
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250
Query: 242 TSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLW 301
T LEDL GGLQFH LIK+GFHQNSH+GSGLIDLY+KC G M DC KVFEEI +PDLVLW
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310
Query: 302 NTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALTI 360
NTM+SGYSQ EE+ + AL CF+++ +GY P+DCSFVCVISACSNL SPS GKQIH+L +
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370
Query: 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEAL 420
K +I SNRISV+NAL+AMYSKCGNL+DARRLFDRM EHNTVSLNSMIAGYAQHGI ME+L
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESL 430
Query: 421 RLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480
LF+WMLE I PT+ITF+SVLSACAHTG+V EG YF+MMK+ F EPE EHYSCMIDL
Sbjct: 431 HLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDL 490
Query: 481 LGRAGKLTDAERLIEAMPFNPGSI-----------------ALKAANHFLQLEPSNAVPY 523
LGRAGKL++AE LI MPFNPGSI A+KAAN LQLEPSNA PY
Sbjct: 491 LGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPY 550
Query: 524 VMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIH 583
V+L+N+YA++G+WEEVAT+R+ MRDRGV+KKPG SWIEVKK++HVFVAED SHPMIKEI+
Sbjct: 551 VVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIY 610
Query: 584 NYLEEMSRKMKQAGYVPD---------------KEKRLVHHSEKLAVAFGLLSTSYGEPI 628
+LEEMS KMK+AGYVPD KE RL HHSEKLAVAFGL+ST GEP+
Sbjct: 611 EFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPV 670
Query: 629 LVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
LV+KNLRICGDCHNAIKFISAIAGREITVRD +RFHCFK+G+CSCGDYW
Sbjct: 671 LVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/709 (69%), Positives = 572/709 (80%), Gaps = 33/709 (4%)
Query: 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQ 61
FR +LKTC+ RDL TGKSLH+LY+K+ +P S Y SNHFILLYSKCG L+ A AF
Sbjct: 11 FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70
Query: 62 HANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKD 121
NVFSFN ++AAYA++ R A QLFDQIP+PDLVSYNTLISAYADCG+T AL LF
Sbjct: 71 DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130
Query: 122 MREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181
MRE D D FTLS +ITA +++ LI QLH +A+ GFD Y SVNN+LLT Y +NG LD
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190
Query: 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241
+AKRVFY MG I+DEVSWNSM+VAYGQH+EG +AL LFQEMV L +DM+TLAS+LTAF
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250
Query: 242 TSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLW 301
T LEDL GGLQFH LIK+GFHQNSH+GSGLIDLY+KC G M DC KVFEEI +PDLVLW
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310
Query: 302 NTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALTI 360
NTM+SGYSQ EE+ + AL CF+++ +GY P+DCSFVCVISACSNL SPS GKQIH+L +
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370
Query: 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEAL 420
K +I SNRISV+NAL+AMYSKCGNL+DARRLFDRM EHNTVSLNSMIAGYAQHGI ME+L
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESL 430
Query: 421 RLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480
LF+WMLE I PT+ITF+SVLSACAHTG+V EG YF+MMK+ F EPE EHYSCMIDL
Sbjct: 431 HLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDL 490
Query: 481 LGRAGKLTDAERLIEAMPFNPGSI-----------------ALKAANHFLQLEPSNAVPY 523
LGRAGKL++AE LI MPFNPGSI A+KAAN LQLEPSNA PY
Sbjct: 491 LGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPY 550
Query: 524 VMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIH 583
V+L+N+YA++G+WEEVAT+R+ MRDRGV+KKPG SWIEVKK++HVFVAED SHPMIKEI+
Sbjct: 551 VVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIY 610
Query: 584 NYLEEMSRKMKQAGYVPD---------------KEKRLVHHSEKLAVAFGLLSTSYGEPI 628
+LEEMS KMK+AGYVPD KE RL HHSEKLAVAFGL+ST GEP+
Sbjct: 611 EFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPV 670
Query: 629 LVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
LV+KNLRICGDCHNAIKFISAIAGREITVRD +RFHCFK+G+CSCGDYW
Sbjct: 671 LVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/712 (66%), Positives = 573/712 (80%), Gaps = 35/712 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TFR +LK C+ +RDL+TGK+LHALY K+L+P S YLSNHF LLYSKCG L A +F+ T
Sbjct: 11 TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
Q+ NVFS+N L+ AYA+ I ARQ+FD+IPQPD+VSYNTLI+AYAD G+ AL LF
Sbjct: 71 QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
++RE RF DGFTLSG+I A +++ L++QLHC + CG+D YASVNN++L CYSR GFL
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFL 190
Query: 181 DEAKRVFYEMGE--IKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238
+EA+RVF EMGE +DEVSWN+M+VA GQHREGLEA++LF+EMV L +DM+T+AS+L
Sbjct: 191 NEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVL 250
Query: 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDL 298
TAFT ++DLVGG+QFH +IKSGFH NSH+GSGLIDLY+KC+G M +C KVFEEI PDL
Sbjct: 251 TAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDL 310
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHA 357
VLWNTMISG+SQ E+ S+ + CF+++ G+HPDDCSFVCV SACSNL SPS+GKQ+HA
Sbjct: 311 VLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHA 370
Query: 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGM 417
L IK +I NR+SVNNALVAMYSKCGN+ DARR+FD MPEHN VSLNSMIAGYAQHG+ +
Sbjct: 371 LAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEV 430
Query: 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477
E+LRLFE ML+ +I P ITF++VLSAC HTGKV EGQKYF+MMK+ F EPE EHYSCM
Sbjct: 431 ESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCM 490
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSI-----------------ALKAANHFLQLEPSNA 520
IDLLGRAGKL +AER+IE MPFNPGSI A+KAAN FLQLEP NA
Sbjct: 491 IDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNA 550
Query: 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIK 580
PYVML+N+YA++ +WEE AT++RLMR+RGV+KKPG SWIE+ K++HVFVAED SHPMIK
Sbjct: 551 APYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIK 610
Query: 581 EIHNYLEEMSRKMKQAGYVPD---------------KEKRLVHHSEKLAVAFGLLSTSYG 625
EIH Y+ E+ RKMKQAGYVPD KE+RL++HSEKLAVAFGL+ST
Sbjct: 611 EIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEW 670
Query: 626 EPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
PILV+KNLRICGDCHNAIK ISAI GREITVRDT+RFHCFK+G CSCGDYW
Sbjct: 671 VPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa] gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/711 (67%), Positives = 568/711 (79%), Gaps = 34/711 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
+FRQ+LK+C+ +DL+TGKSLH +YLK+L+P S YLSNHFILLYSKC L+ AHHAFNQT
Sbjct: 10 SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
NVFSFN L+AAYA++ I A LFDQIPQPDLVS+NTLI+AYAD GDT SALSLF
Sbjct: 70 HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
+MRE DGFT SG+ITA N++ LI+QLH LA GFD Y SV NSLLT YS+NG L
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGIL 189
Query: 181 DEAKRVFYEMG-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILT 239
+EA+ VF MG E++DEVSWNSM+VAYGQH+ GL+AL L+++MV +DM+TLAS+LT
Sbjct: 190 EEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLT 249
Query: 240 AFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLV 299
F+ +EDL GGLQFHA IK+GF++N H+GSGLID+YAKC M + KVFEEI DLV
Sbjct: 250 TFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLV 309
Query: 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHAL 358
+WNTMISGYSQ +E S +AL CF+++ R GY PDDCSFVC ISACSNL SPS GKQ HAL
Sbjct: 310 VWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHAL 369
Query: 359 TIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGME 418
+K EI SN+ISVNNALV MYSKCGNL+DAR+LF RMP+HNTV+LNS+IAGYAQHGIG E
Sbjct: 370 AMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTE 429
Query: 419 ALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMI 478
+L LFE ML +I PT+IT VS+LSACAHTG+V EG+KYF+MMKD+FG EPE EHYSCMI
Sbjct: 430 SLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMI 489
Query: 479 DLLGRAGKLTDAERLIEAMPFNPGS-----------------IALKAANHFLQLEPSNAV 521
DLLGRAGKL++AERLI+ MPF+PGS +A KAAN FLQLEP+NAV
Sbjct: 490 DLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAV 549
Query: 522 PYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKE 581
PY+MLA++Y+A+ KWEE A IR+LMRDRG++KKPG SWIE+ K++HVFVAED SHP IKE
Sbjct: 550 PYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKE 609
Query: 582 IHNYLEEMSRKMKQAGYVPD---------------KEKRLVHHSEKLAVAFGLLSTSYGE 626
IH YL+EM KMK+AGYVPD KE L HHSEKLAVAFGLL T +GE
Sbjct: 610 IHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGE 669
Query: 627 PILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
P+LV+KNLRICGDCHNAIKF+SAIA R+ITVRD YRFHCF+DGRCSCGDYW
Sbjct: 670 PLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/712 (66%), Positives = 569/712 (79%), Gaps = 35/712 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TFR +LK C+ +RDL+TGK LHALY K+L+P S YLSNHF LLYSKCG L A +F+ T
Sbjct: 11 TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
Q+ NVFS+N L+ AYA+ I AR++FD+IPQPD+VSYNTLI+AYAD G+ L LF+
Sbjct: 71 QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
++RE R DGFTLSG+ITA +++ L++QLHC + CG D YASVNN++L CYSR GFL
Sbjct: 131 EVRELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFL 190
Query: 181 DEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238
EA+RVF EMGE +DEVSWN+M+VA GQHREG+EA+ LF+EMV L +DM+T+AS+L
Sbjct: 191 SEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVL 250
Query: 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDL 298
TAFT ++DLVGG QFH +IKSGFH NSH+GSGLIDLY+KC+G M +C KVFEEI PDL
Sbjct: 251 TAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDL 310
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHA 357
VLWNTMISG+S E+ S+ L CF+++ R G+ PDDCSFVCV SACSNLS PSLGKQ+HA
Sbjct: 311 VLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHA 370
Query: 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGM 417
L IK ++ NR+SVNNALVAMYSKCGN+ DARR+FD MPEHNTVSLNSMIAGYAQHG+ +
Sbjct: 371 LAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEV 430
Query: 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477
E+LRLFE MLE +I P +ITF++VLSAC HTGKV EGQKYF+MMK+ F EPE EHYSCM
Sbjct: 431 ESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCM 490
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSI-----------------ALKAANHFLQLEPSNA 520
IDLLGRAGKL +AER+IE MPFNPGSI A+KAAN FL+LEP NA
Sbjct: 491 IDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNA 550
Query: 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIK 580
PYVML+N+YA++ +WEE AT++RLMR+RGV+KKPG SWIE+ K++HVFVAED SHPMIK
Sbjct: 551 APYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIK 610
Query: 581 EIHNYLEEMSRKMKQAGYVPD---------------KEKRLVHHSEKLAVAFGLLSTSYG 625
EIH Y+ +M +KMKQAGYVPD +E+RL++HSEKLAVAFGL+ST G
Sbjct: 611 EIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEG 670
Query: 626 EPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
PILV+KNLRICGDCHNA+K ISA+ GREITVRDT+RFHCFK+G CSC DYW
Sbjct: 671 VPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g49710-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/711 (63%), Positives = 556/711 (78%), Gaps = 34/711 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
+FRQ LKTC+ RDL TGKSLHALY+K+ VP S YLSNHF+LLYSKC LSAA F+ T
Sbjct: 10 SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
NVFSFN L++AYA++ + A QLFD++PQPD VSYNTLI+AYA GDT+ A LF
Sbjct: 70 HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
+MRE D DGFTLSG+ITA N+ LI+QLH L++ G D Y SV N+L+T YS+NGFL
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189
Query: 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240
EA+R+F+ + E +DEVSWNSMVVAY QHREG +AL+L+ EM L +D++TLAS+LTA
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTA 249
Query: 241 FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVL 300
FT+++DL+GGLQFHA LIKSG+HQNSH+GSGLIDLY+KC G M DC KVF+EI PDLVL
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVL 309
Query: 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALT 359
WNTMISGYS E+ SD+AL CF++L VG+ PDDCS VCVISACSN+ SPS G+Q+H L
Sbjct: 310 WNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLA 369
Query: 360 IKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEA 419
+K++I SNRISVNNAL+AMYSKCGNL DA+ LFD MPEHNTVS NSMIAGYAQHG+G ++
Sbjct: 370 LKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQS 429
Query: 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479
L LF+ MLE + PTNITF+SVL+ACAHTG+V +G+ YF+MMK FG EPE H+SCMID
Sbjct: 430 LHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMID 489
Query: 480 LLGRAGKLTDAERLIEAMPFNPG-----------------SIALKAANHFLQLEPSNAVP 522
LLGRAGKL++AERLIE +PF+PG +A+KAAN LQL+P NA P
Sbjct: 490 LLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549
Query: 523 YVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEI 582
YVMLANIY+ +G+ ++ A++R+LMRDRGV+KKPG SWIEV +++H+FVAED HPMIK+I
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKI 609
Query: 583 HNYLEEMSRKMKQAGYVP----------------DKEKRLVHHSEKLAVAFGLLSTSYGE 626
YLEEM RK+K+ GY P ++E RL HHSEKLAV+FGL+ST GE
Sbjct: 610 QEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGE 669
Query: 627 PILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
PILV KNLRIC DCHNAIK+IS + REITVRD++RFHCFKDG+CSCG YW
Sbjct: 670 PILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/711 (63%), Positives = 554/711 (77%), Gaps = 34/711 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
FRQ LKTC+ RDL TGKSLHALY+K+ VP S YLSNHF+LLYSKC LSAA F+ T
Sbjct: 10 NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
NVFSFN L++AYA++ + A QLFD++PQPD VSYNTLI+AYA GDT+ A LF
Sbjct: 70 HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
+MRE D DGFTLSG+ITA N+ LI+QLH L++ G D Y SV N+L+T YS+NGFL
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189
Query: 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240
EA+R+F+ + E +DEVSWNSMVVAY QHREG +AL+L+ EM L +D++TLAS+LTA
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTA 249
Query: 241 FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVL 300
FT+++DL+GGLQFHA LIKSG+HQNSH+GSGLIDLY+KC G M DC KVF+EI PDLVL
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVL 309
Query: 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALT 359
WNTMISGYS E+ SD+AL CF++L VG+ PDDCS VCVISACSN+ SPS G+Q+H L
Sbjct: 310 WNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLA 369
Query: 360 IKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEA 419
+K++I SNRISVNNAL+AMYSKCGNL DA+ LFD MPEHNTVS NSMIAGYAQHG+G ++
Sbjct: 370 LKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQS 429
Query: 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479
L LF+ MLE PTNITF+SVL+ACAHTG+V +G+ YF+MMK FG EPE H+SCMID
Sbjct: 430 LHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMID 489
Query: 480 LLGRAGKLTDAERLIEAMPFNPG-----------------SIALKAANHFLQLEPSNAVP 522
LLGRAGKL++AERLIE +PF+PG +A+KAAN LQL+P NA P
Sbjct: 490 LLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549
Query: 523 YVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEI 582
YVMLANIY+ +G+ ++ A++R+LMRDRGV+KKPG SWIEV +++H+FVAED HPMIK+I
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKI 609
Query: 583 HNYLEEMSRKMKQAGYVP----------------DKEKRLVHHSEKLAVAFGLLSTSYGE 626
YLEEM RK+K+ GY P ++E RL HHSEKLAV+FGL+ST GE
Sbjct: 610 QEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGE 669
Query: 627 PILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
PILV KNLRIC DCHNAIK+IS + REITVRD++RFHCFKDG+CSCG YW
Sbjct: 670 PILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/712 (62%), Positives = 540/712 (75%), Gaps = 35/712 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
+FR +L V RDL TGKSLHALY+K++V S YLSNHF+ LYSKCGCLS A AF+ T
Sbjct: 10 SFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDST 69
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
+ NVFS+NV++ AYA+ +I ARQLFD+ PQPD VSYNTLIS YAD +T +A+ LFK
Sbjct: 70 EEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFK 129
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
MRE F+ DGFTLSGLI A + + LIKQLHC A+ GFD Y+SVNN+ +T YS+ G L
Sbjct: 130 RMRELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLL 189
Query: 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240
EA VFY M ++DEVSWNSM+VAYGQH+EG +AL L++EM+ +DM+TLAS+L A
Sbjct: 190 REAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249
Query: 241 FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG--DMRDCMKVFEEIPQPDL 298
TSL+ L+GG QFH LIK+GFHQNSH+GSGLID Y+KC G M D KVF+EI PDL
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDL 309
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHA 357
VLWNTMISGYS EE+S++A+ F+++ R+G+ PDDCSFVCV SACSNL SPS GKQIH
Sbjct: 310 VLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHG 369
Query: 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGM 417
L IK I SNRISVNNAL+++Y K GNL DARR+FDRMPE N VS N MI GYAQHG G
Sbjct: 370 LAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGT 429
Query: 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477
EALRL++ ML++ I P NITFV++LSACAH GKV EGQKYF+ MK+ F EPE EHYSCM
Sbjct: 430 EALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCM 489
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSIAL-----------------KAANHFLQLEPSNA 520
IDLLGRAGKL +AER I+AMP+ PGS+A +AA + ++P A
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAA 549
Query: 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIK 580
PYVMLAN+YA +GKWEE+A++R+ MR + ++KKPG SWIEVKK+ HVFVAED SHPMI+
Sbjct: 550 TPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIR 609
Query: 581 EIHNYLEEMSRKMKQAGYVPDKE---------------KRLVHHSEKLAVAFGLLSTSYG 625
E++ YLEEM +KMK+ GYV DK+ RL HHSEKLAVAFGL+ST G
Sbjct: 610 EVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDG 669
Query: 626 EPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
E I+V+KNLRICGDCHNAIKF+SA+AGREI VRD RFHCFKDG+CSCGDYW
Sbjct: 670 EEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana] gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/712 (61%), Positives = 536/712 (75%), Gaps = 35/712 (4%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TFR +L V RDL TGKSLHALY+K++V S YLSNHF+ LYSKCG LS A AF T
Sbjct: 10 TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
+ NVFS+NV++ AYA+ +I ARQLFD+IPQPD VSYNTLIS YAD +T +A+ LFK
Sbjct: 70 EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
MR+ F+ DGFTLSGLI A + + LIKQLHC ++ GFD Y+SVNN+ +T YS+ G L
Sbjct: 130 RMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLL 189
Query: 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240
EA VFY M E++DEVSWNSM+VAYGQH+EG +AL L++EM+ +DM+TLAS+L A
Sbjct: 190 REAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249
Query: 241 FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG--DMRDCMKVFEEIPQPDL 298
TSL+ L+GG QFH LIK+GFHQNSH+GSGLID Y+KC G M D KVF+EI PDL
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDL 309
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHA 357
V+WNTMISGYS EE S++A+ F+++ R+G+ PDDCSFVCV SACSNL SPS KQIH
Sbjct: 310 VVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHG 369
Query: 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGM 417
L IK I SNRISVNNAL+++Y K GNL+DAR +FDRMPE N VS N MI GYAQHG G
Sbjct: 370 LAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGT 429
Query: 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477
EAL L++ ML++ I P ITFV+VLSACAH GKV EGQ+YF+ MK+ F EPE EHYSCM
Sbjct: 430 EALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCM 489
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSIAL-----------------KAANHFLQLEPSNA 520
IDLLGRAGKL +AER I+AMP+ PGS+A +AAN + ++P A
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAA 549
Query: 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIK 580
PYVMLAN+YA + KWEE+A++R+ MR + ++KKPG SWIEVKK+ HVFVAED SHPMI+
Sbjct: 550 TPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIR 609
Query: 581 EIHNYLEEMSRKMKQAGYVPDKE---------------KRLVHHSEKLAVAFGLLSTSYG 625
E++ YLEEM +KMK+ GYV DK+ RL HHSEKLAVAFGL+ST G
Sbjct: 610 EVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDG 669
Query: 626 EPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
E ++V+KNLRICGDCHNAIKF+SA+AGREI VRD RFHCFKDG+CSCGDYW
Sbjct: 670 EELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/620 (66%), Positives = 477/620 (76%), Gaps = 46/620 (7%)
Query: 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQ 61
FR +LKTC+ RDL TGKSLH+LY+K+ +P S Y SNHFILLYSKCG L+ A AF
Sbjct: 11 FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70
Query: 62 HANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKD 121
NVFSFN ++AAYA++ R A QLFDQIP+PDLVSYNTLISAYADCG+T AL LF
Sbjct: 71 DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130
Query: 122 MREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181
MRE D DGFTLS +ITA +++ LI QLH +A+ GFD Y SVNN+LLT Y +NG LD
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190
Query: 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241
+AKRVFY MG I+DEVSWNSM+VAYGQH+EG +AL LFQEMV L +DM+TLAS+LTAF
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250
Query: 242 TSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLW 301
T LEDL GGLQFH LIK+GFHQNSH+GSGLIDLY+KC G M DC KVFEEI +PDLVLW
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310
Query: 302 NTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALTI 360
NTM+SGYSQ EE+ + AL CF+++ +GY P+DCSFVCVISACSNL SPS GKQIH+L +
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370
Query: 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEAL 420
K RLFDRM EHNTVSLNSMIAGYAQHGI ME+L
Sbjct: 371 K----------------------------RLFDRMAEHNTVSLNSMIAGYAQHGIEMESL 402
Query: 421 RLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480
LF+WMLE I PT+ITF+SVLSACAHTG+V EG YF+MMK+ F EPE EHYSCMIDL
Sbjct: 403 HLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDL 462
Query: 481 LGRAGKLTDAERLIEAMPFNPGSI-----------------ALKAANHFLQLEPSNAVPY 523
LGRAGKL++AE LI MPFNPGSI A+KAAN LQLEPSNA PY
Sbjct: 463 LGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPY 522
Query: 524 VMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIH 583
V+L+N+YA++G+WEEVAT+R+ MRDRGV+KKPG SWIEVKK++HVFVAED SHPMIKEI+
Sbjct: 523 VVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIY 582
Query: 584 NYLEEMSRKMKQAGYVPDKE 603
+LEEMS KMK+AGYVPD E
Sbjct: 583 EFLEEMSGKMKRAGYVPDGE 602
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| TAIR|locus:2097365 | 721 | AT3G49710 "AT3G49710" [Arabido | 0.750 | 0.704 | 0.636 | 8e-172 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.626 | 0.428 | 0.371 | 2.1e-129 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.630 | 0.490 | 0.373 | 6.1e-114 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.654 | 0.497 | 0.329 | 2.7e-111 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.608 | 0.484 | 0.334 | 9.1e-109 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.568 | 0.611 | 0.347 | 2.2e-105 | |
| TAIR|locus:2183886 | 752 | RARE1 "REQUIRED FOR ACCD RNA E | 0.654 | 0.589 | 0.328 | 2.8e-101 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.722 | 0.575 | 0.311 | 3.6e-101 | |
| TAIR|locus:2183931 | 822 | AT5G13230 [Arabidopsis thalian | 0.649 | 0.535 | 0.332 | 3.6e-101 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.539 | 0.613 | 0.338 | 1.1e-99 |
| TAIR|locus:2097365 AT3G49710 "AT3G49710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1670 (592.9 bits), Expect = 8.0e-172, P = 8.0e-172
Identities = 325/511 (63%), Positives = 393/511 (76%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TFR +L V RDL TGKSLHALY+K++V S YLSNHF+ LYSKCG LS A AF T
Sbjct: 10 TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
+ NVFS+NV++ AYA+ +I ARQLFD+IPQPD VSYNTLIS YAD +T +A+ LFK
Sbjct: 70 EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
MR+ F+ DGFTLSGLI A + + LIKQLHC ++ GFD Y+SVNN+ +T YS+ G L
Sbjct: 130 RMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLL 189
Query: 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240
EA VFY M E++DEVSWNSM+VAYGQH+EG +AL L++EM+ +DM+TLAS+L A
Sbjct: 190 REAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249
Query: 241 FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG-D-MRDCMKVFEEIPQPDL 298
TSL+ L+GG QFH LIK+GFHQNSH+GSGLID Y+KC G D M D KVF+EI PDL
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDL 309
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHA 357
V+WNTMISGYS EE S++A+ F+++ R+G+ PDDCSFVCV SACSNLS PS KQIH
Sbjct: 310 VVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHG 369
Query: 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGM 417
L IK I SNRISVNNAL+++Y K GNL+DAR +FDRMPE N VS N MI GYAQHG G
Sbjct: 370 LAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGT 429
Query: 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477
EAL L++ ML++ I P ITFV+VLSACAH GKV EGQ+YF+ MK+ F EPE EHYSCM
Sbjct: 430 EALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCM 489
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKA 508
IDLLGRAGKL +AER I+AMP+ PGS+A A
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAA 520
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 2.1e-129, Sum P(3) = 2.1e-129
Identities = 161/433 (37%), Positives = 244/433 (56%)
Query: 69 NVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFD 128
N L+ Y + + AR +FD + + DL+S+N++I+ A G A+ LF +
Sbjct: 354 NSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLK 413
Query: 129 TDGFTLSGLITASSN---NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKR 185
D +T++ ++ A+S+ L L KQ+H AI + V+ +L+ YSRN + EA+
Sbjct: 414 PDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE- 472
Query: 186 VFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLE 245
+ +E D V+WN+M+ Y Q +G + L+LF M D +TLA++ L
Sbjct: 473 ILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLF 531
Query: 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMI 305
+ G Q HA+ IKSG+ + + SG++D+Y KC GDM F+ IP PD V W TMI
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC-GDMSAAQFAFDSIPVPDDVAWTTMI 590
Query: 306 SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP-SLGKQIHALTIKIEI 364
SG + E ++A F ++ +G PD+ + + A S L+ G+QIHA +K+
Sbjct: 591 SGCIENGE-EERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNC 649
Query: 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFE 424
+N V +LV MY+KCG+++DA LF R+ N + N+M+ G AQHG G E L+LF+
Sbjct: 650 -TNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFK 708
Query: 425 WMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484
M I P +TF+ VLSAC+H+G V+E K+ M +G +PE EHYSC+ D LGRA
Sbjct: 709 QMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 485 GKLTDAERLIEAM 497
G + AE LIE+M
Sbjct: 769 GLVKQAENLIESM 781
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 164/439 (37%), Positives = 249/439 (56%)
Query: 69 NVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFD 128
N L+A Y + R+ SAR++FD++ + D++S+N++I+ Y G E LS+F M +
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293
Query: 129 TDGFTLSGLIT--ASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186
D T+ + A S + L + +H + + F N+LL YS+ G LD AK V
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353
Query: 187 FYEMGEIKDEVSWNSMVVAYGQHREGL--EALQLFQEMVSLQLGLDMYTLASILTAFTSL 244
F EM + + VS+ SM+ Y REGL EA++LF+EM + D+YT+ ++L
Sbjct: 354 FREMSD-RSVVSYTSMIAGYA--REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 410
Query: 245 EDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTM 304
L G + H + ++ + + + L+D+YAKC G M++ VF E+ D++ WNT+
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC-GSMQEAELVFSEMRVKDIISWNTI 469
Query: 305 ISGYSQKEEYSDQALGCFKKL-NRVGYHPDDCSFVCVISACSNLSP-SLGKQIHALTIKI 362
I GYS K Y+++AL F L + PD+ + CV+ AC++LS G++IH ++
Sbjct: 470 IGGYS-KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN 528
Query: 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRL 422
S+R V N+LV MY+KCG L A LFD + + VS MIAGY HG G EA+ L
Sbjct: 529 GYFSDR-HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIAL 587
Query: 423 FEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLG 482
F M + I I+FVS+L AC+H+G V EG ++F++M+ EP EHY+C++D+L
Sbjct: 588 FNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLA 647
Query: 483 RAGKLTDAERLIEAMPFNP 501
R G L A R IE MP P
Sbjct: 648 RTGDLIKAYRFIENMPIPP 666
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 153/464 (32%), Positives = 254/464 (54%)
Query: 55 HAFNQTQ-HANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTE 113
HA+ + N F N L+A Y + ++AS++ L DLV++NT++S+
Sbjct: 225 HAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLL 284
Query: 114 SALSLFKDMREKRFDTDGFTLSGLITASSNNLCLI--KQLHCLAIYCG-FDHYASVNNSL 170
AL ++M + + D FT+S ++ A S+ L K+LH A+ G D + V ++L
Sbjct: 285 EALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSAL 344
Query: 171 LTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMV-SLQLGL 229
+ Y + +RVF M + K + WN+M+ Y Q+ EAL LF M S L
Sbjct: 345 VDMYCNCKQVLSGRRVFDGMFDRKIGL-WNAMIAGYSQNEHDKEALLLFIGMEESAGLLA 403
Query: 230 DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKV 289
+ T+A ++ A H ++K G ++ + + L+D+Y++ G + M++
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL-GKIDIAMRI 462
Query: 290 FEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN----------RVGYHPDDCSFVC 339
F ++ DLV WNTMI+GY E + D L K N RV P+ + +
Sbjct: 463 FGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMT 522
Query: 340 VISACSNLSP-SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH 398
++ +C+ LS + GK+IHA IK + ++ ++V +ALV MY+KCG L+ +R++FD++P+
Sbjct: 523 ILPSCAALSALAKGKEIHAYAIKNNLATD-VAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581
Query: 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYF 458
N ++ N +I Y HG G EA+ L M+ + P +TF+SV +AC+H+G V EG + F
Sbjct: 582 NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF 641
Query: 459 SMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP--FN 500
+MK +G EP +HY+C++DLLGRAG++ +A +L+ MP FN
Sbjct: 642 YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFN 685
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
Identities = 142/424 (33%), Positives = 235/424 (55%)
Query: 83 SARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASS 142
+A ++FD++ + ++V++ +I+ G A+ F DM F++D FTLS + +A +
Sbjct: 221 NAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA 280
Query: 143 N--NLCLIKQLHCLAIYCGF--DHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVS 198
NL L KQLH AI G D S+ + C S +G +D+ ++VF M E +S
Sbjct: 281 ELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKC-SADGSVDDCRKVFDRM-EDHSVMS 338
Query: 199 WNSMVVAYGQHRE-GLEALQLFQEMVSL-QLGLDMYTLASILTAFTSLEDLVGGLQFHAH 256
W +++ Y ++ EA+ LF EM++ + + +T +S A +L D G Q
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398
Query: 257 LIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSD 316
K G NS + + +I ++ K S M D + FE + + +LV +NT + G + + +
Sbjct: 399 AFKRGLASNSSVANSVISMFVK-SDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF-E 456
Query: 317 QALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALTIKIEIRSNRISVNNAL 375
QA ++ +F ++S +N+ S G+QIH+ +K+ + N+ V NAL
Sbjct: 457 QAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ-PVCNAL 515
Query: 376 VAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN 435
++MYSKCG+++ A R+F+ M N +S SMI G+A+HG + L F M+E + P
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575
Query: 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIE 495
+T+V++LSAC+H G V+EG ++F+ M + +P+ EHY+CM+DLL RAG LTDA I
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635
Query: 496 AMPF 499
MPF
Sbjct: 636 TMPF 639
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 138/397 (34%), Positives = 223/397 (56%)
Query: 111 DTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIK-QLHCLAIYC-GFDHYASVNN 168
D A+ ++ D T S LI +N + + L C +Y G + N
Sbjct: 41 DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100
Query: 169 SLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLG 228
L+ Y + L++A ++F +M + ++ +SW +M+ AY + + +AL+L M+ +
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQ-RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159
Query: 229 LDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMK 288
++YT +S+L + + D+ H +IK G + + S LID++AK G+ D +
Sbjct: 160 PNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKL-GEPEDALS 215
Query: 289 VFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS 348
VF+E+ D ++WN++I G++Q SD AL FK++ R G+ + + V+ AC+ L+
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSR-SDVALELFKRMKRAGFIAEQATLTSVLRACTGLA 274
Query: 349 P-SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMI 407
LG Q H +K + + +NNALV MY KCG+LEDA R+F++M E + ++ ++MI
Sbjct: 275 LLELGMQAHVHIVKYD---QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331
Query: 408 AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGF 467
+G AQ+G EAL+LFE M + P IT V VL AC+H G + +G YF MK ++G
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI 391
Query: 468 EPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSI 504
+P EHY CMIDLLG+AGKL DA +L+ M P ++
Sbjct: 392 DPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAV 428
|
|
| TAIR|locus:2183886 RARE1 "REQUIRED FOR ACCD RNA EDITING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 148/451 (32%), Positives = 247/451 (54%)
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
++ +V N +L Y + A +LFD++ + + VS T+ISAYA+ G + A+ LF
Sbjct: 114 ENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFS 173
Query: 121 DMREKRFDTDGFTLSGLITASSNNLCLI--KQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178
M + L+ + N L +Q+H I G S+ ++ Y + G
Sbjct: 174 GMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCG 233
Query: 179 FLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238
+L AKRVF +M +K V+ ++V Y Q +AL+LF ++V+ + D + + +L
Sbjct: 234 WLVGAKRVFDQMA-VKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVL 292
Query: 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDL 298
A SLE+L G Q HA + K G +G+ L+D Y KCS C + F+EI +P+
Sbjct: 293 KACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESAC-RAFQEIREPND 351
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKL-NRVGYHPDDCSFVCVISACSNLSP-SLGKQIH 356
V W+ +ISGY Q ++ ++A+ FK L ++ + ++ + ACS L+ ++G Q+H
Sbjct: 352 VSWSAIISGYCQMSQF-EEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVH 410
Query: 357 ALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIG 416
A IK + ++ +AL+ MYSKCG L+DA +F+ M + V+ + I+G+A +G
Sbjct: 411 ADAIKRSLIGSQYG-ESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNA 469
Query: 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSC 476
EALRLFE M+ + P ++TF++VL+AC+H G V +G+ M + P +HY C
Sbjct: 470 SEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDC 529
Query: 477 MIDLLGRAGKLTDAERLIEAMPFNPGSIALK 507
MID+ R+G L +A + ++ MPF P +++ K
Sbjct: 530 MIDIYARSGLLDEALKFMKNMPFEPDAMSWK 560
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 165/529 (31%), Positives = 275/529 (51%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TF V K C + G+S HAL L + ++ N + +YS+C LS A F++
Sbjct: 129 TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIP-----QPDLVSYNTLISAYADCGDTESA 115
+V S+N ++ +YA+ + A ++F ++ +PD + TL++ C +
Sbjct: 189 SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNI---TLVNVLPPCASLGTH 245
Query: 116 LSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQL-HC------LAIYCGFDHYASVN- 167
SL K + F + + + CL+ C ++ V+
Sbjct: 246 -SLGKQLH--CFAVTSEMIQNMFVGN----CLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 168 NSLLTCYSRNGFLDEAKRVFYEMGEIK---DEVSWNSMVVAYGQHREGLEALQLFQEMVS 224
N+++ YS+ G ++A R+F +M E K D V+W++ + Y Q G EAL + ++M+S
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 225 LQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKS--GFHQNSH-----IGSGLIDLYA 277
+ + TL S+L+ S+ L+ G + H + IK +N H + + LID+YA
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418
Query: 278 KCSGDMRDCMKVFEEI-PQP-DLVLWNTMISGYSQKEEYSDQALGCFKKL--NRVGYHPD 333
KC + +F+ + P+ D+V W MI GYSQ + +++AL ++ P+
Sbjct: 419 KCK-KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD-ANKALELLSEMFEEDCQTRPN 476
Query: 334 DCSFVCVISACSNLSP-SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLF 392
+ C + AC++L+ +GKQIHA ++ + + + V+N L+ MY+KCG++ DAR +F
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536
Query: 393 DRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVA 452
D M N V+ S++ GY HG G EAL +F+ M +T + VL AC+H+G +
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596
Query: 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501
+G +YF+ MK +FG P EHY+C++DLLGRAG+L A RLIE MP P
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEP 645
|
|
| TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 150/451 (33%), Positives = 249/451 (55%)
Query: 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDM 122
+N F L+ AY+ + SAR +F+ I D+V + ++S Y + G E +L L M
Sbjct: 179 SNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCM 238
Query: 123 REKRFDTDGFTLSGLITASSN--NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180
R F + +T + AS K +H + + V LL Y++ G +
Sbjct: 239 RMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDM 298
Query: 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240
+A +VF EM + D V W+ M+ + Q+ EA+ LF M + + +TL+SIL
Sbjct: 299 SDAFKVFNEMPK-NDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNG 357
Query: 241 FTSLEDLVG-GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLV 299
++ G G Q H ++K GF + ++ + LID+YAKC M +K+F E+ + V
Sbjct: 358 -CAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCE-KMDTAVKLFAELSSKNEV 415
Query: 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHAL 358
WNT+I GY E +A F++ R + +F + AC++L S LG Q+H L
Sbjct: 416 SWNTVIVGYENLGE-GGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGL 474
Query: 359 TIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGME 418
IK + +++V+N+L+ MY+KCG+++ A+ +F+ M + S N++I+GY+ HG+G +
Sbjct: 475 AIKTN-NAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQ 533
Query: 419 ALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYF-SMMKDMFGFEPEGEHYSCM 477
ALR+ + M + + P +TF+ VLS C++ G + +GQ+ F SM++D G EP EHY+CM
Sbjct: 534 ALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRD-HGIEPCLEHYTCM 592
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKA 508
+ LLGR+G+L A +LIE +P+ P + +A
Sbjct: 593 VRLLGRSGQLDKAMKLIEGIPYEPSVMIWRA 623
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 127/375 (33%), Positives = 218/375 (58%)
Query: 137 LITASSNNLCLIKQLHCLAIYCGFD-HYASVNNSL---LTCYSRNGFLDEAKRVFYEMGE 192
L T +++ ++Q+H +I G A + L L + A +VF ++ +
Sbjct: 22 LQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEK 81
Query: 193 IKDEVSWNSMVVAYGQHREGLEALQLFQEM-VSLQLGLDMYTLASILTAFTSLEDLVGGL 251
+ WN+++ Y + + A L++EM VS + D +T ++ A T++ D+ G
Sbjct: 82 PINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGE 141
Query: 252 QFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQK 311
H+ +I+SGF ++ + L+ LYA C GD+ KVF+++P+ DLV WN++I+G+++
Sbjct: 142 TIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200
Query: 312 EEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP-SLGKQIHALTIKIEIRSNRIS 370
+ ++AL + ++N G PD + V ++SAC+ + +LGK++H IK+ + N S
Sbjct: 201 GK-PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 259
Query: 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430
+N L+ +Y++CG +E+A+ LFD M + N+VS S+I G A +G G EA+ LF++M T
Sbjct: 260 -SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 318
Query: 431 -IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD 489
+ P ITFV +L AC+H G V EG +YF M++ + EP EH+ CM+DLL RAG++
Sbjct: 319 GLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKK 378
Query: 490 AERLIEAMPFNPGSI 504
A I++MP P +
Sbjct: 379 AYEYIKSMPMQPNVV 393
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M2Y7 | PP274_ARATH | No assigned EC number | 0.6193 | 1.0 | 0.9389 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 677 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-152 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-137 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-56 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-48 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-26 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 9e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 461 bits (1188), Expect = e-152
Identities = 250/706 (35%), Positives = 381/706 (53%), Gaps = 68/706 (9%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TF VL+TC G DL G+ +HA ++ + N I +Y KCG
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG------------ 236
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
+ SAR +FD++P+ D +S+N +IS Y + G+ L LF
Sbjct: 237 -------------------DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF 277
Query: 121 DMREKRFDTDGFTLSGLITASS--NNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178
MRE D D T++ +I+A + L +++H + GF SV NSL+ Y G
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 179 FLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238
EA++VF M E KD VSW +M+ Y ++ +AL+ + M + D T+AS+L
Sbjct: 338 SWGEAEKVFSRM-ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDL 298
+A L DL G++ H + G + + LI++Y+KC + ++VF IP+ D+
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK-CIDKALEVFHNIPEKDV 455
Query: 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP-SLGKQIHA 357
+ W ++I+G +AL F+++ + P+ + + +SAC+ + GK+IHA
Sbjct: 456 ISWTSIIAGLRLNNR-CFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHA 513
Query: 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGM 417
++ I + + NAL+ +Y +CG + A F+ E + VS N ++ GY HG G
Sbjct: 514 HVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGS 571
Query: 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477
A+ LF M+E+ + P +TF+S+L AC+ +G V +G +YF M++ + P +HY+C+
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 478 IDLLGRAGKLTDAERLIEAMPFNPGSI---AL--------------KAANHFLQLEPSNA 520
+DLLGRAGKLT+A I MP P AL AA H +L+P++
Sbjct: 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691
Query: 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIK 580
Y++L N+YA +GKW+EVA +R+ MR+ G+ PG SW+EVK ++H F+ +D SHP IK
Sbjct: 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751
Query: 581 EIHNYLEEMSRKMKQAGYVPDKEKRL-----------VHHSEKLAVAFGLLSTSYGEPIL 629
EI+ LE KMK +G + + HSE+LA+AFGL++T G PI
Sbjct: 752 EINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIW 811
Query: 630 VMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGD 675
V KNL +C +CHN +KFIS I REI+VRDT +FH FKDG CSCGD
Sbjct: 812 VTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 417 bits (1074), Expect = e-137
Identities = 221/632 (34%), Positives = 330/632 (52%), Gaps = 51/632 (8%)
Query: 86 QLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREK-RFDTDGFTLSGLITASSNN 144
+L D + VS + I CG AL LF+ + F T L+ A
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA- 135
Query: 145 LCLIKQLHCLA------IYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVS 198
+K + C+ GF+ + N +L + + G L +A+R+F EM E ++ S
Sbjct: 136 ---LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-RNLAS 191
Query: 199 WNSMV---VAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHA 255
W +++ V G +RE A LF+EM + T +L A L G Q H
Sbjct: 192 WGTIIGGLVDAGNYRE---AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248
Query: 256 HLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYS 315
++K+G ++ + LID+Y+KC GD+ D VF+ +P+ V WN+M++GY+ YS
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKC-GDIEDARCVFDGMPEKTTVAWNSMLAGYAL-HGYS 306
Query: 316 DQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALTIKIEIRSNRISVNNA 374
++AL + ++ G D +F +I S L KQ HA I+ + I N A
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD-IVANTA 365
Query: 375 LVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT 434
LV +YSK G +EDAR +FDRMP N +S N++IAGY HG G +A+ +FE M+ + P
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
Query: 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLI 494
++TF++VLSAC ++G +G + F M + +P HY+CMI+LLGR G L +A +I
Sbjct: 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
Query: 495 EAMPFNPGS-----------------IALKAANHFLQLEPSNAVPYVMLANIYAASGKWE 537
PF P + AA + P YV+L N+Y +SG+
Sbjct: 486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545
Query: 538 EVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAG 597
E A + ++ +G+ P +WIEVKKQ H F + D HP +EI+ L+E+ +++ + G
Sbjct: 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605
Query: 598 YV-----------PDKEKRL-VHHSEKLAVAFGLLSTSYGEPILVMKNLRICGDCHNAIK 645
YV D+EK +HSEKLA+AFGL++TS P+ + ++ RIC DCH IK
Sbjct: 606 YVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIK 665
Query: 646 FISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677
FI+ + REI VRD RFH FK G+CSCGDYW
Sbjct: 666 FIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 1e-56
Identities = 131/426 (30%), Positives = 223/426 (52%), Gaps = 11/426 (2%)
Query: 69 NVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFD 128
N +L+ + R + A +F ++P+ DL S+N L+ YA G + AL L+ M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 129 TDGFTLSGLITASSN--NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186
D +T ++ +L +++H + GF+ V N+L+T Y + G + A+ V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 187 FYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLED 246
F M +D +SWN+M+ Y ++ E LE L+LF M L + D+ T+ S+++A L D
Sbjct: 245 FDRM-PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMIS 306
G + H +++K+GF + + + LI +Y G + KVF + D V W MIS
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS-LGSWGEAEKVFSRMETKDAVSWTAMIS 362
Query: 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL-SPSLGKQIHALTIKIEIR 365
GY +K D+AL + + + PD+ + V+SAC+ L +G ++H L + +
Sbjct: 363 GY-EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421
Query: 366 SNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEW 425
S + V NAL+ MYSKC ++ A +F +PE + +S S+IAG + EAL F
Sbjct: 422 SYVV-VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 426 MLETNIPPTNITFVSVLSACAHTGKVAEGQKYFS-MMKDMFGFEPEGEHYSCMIDLLGRA 484
ML T + P ++T ++ LSACA G + G++ + +++ GF +G + ++DL R
Sbjct: 481 MLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF--DGFLPNALLDLYVRC 537
Query: 485 GKLTDA 490
G++ A
Sbjct: 538 GRMNYA 543
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 8e-48
Identities = 115/355 (32%), Positives = 174/355 (49%), Gaps = 17/355 (4%)
Query: 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVN-- 167
G E AL L + M+E R D L LC K+ +S
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALF-----RLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 168 -----NSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEM 222
N++L+ + R G L A VF +M E +D SWN +V Y + EAL L+ M
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRM 178
Query: 223 VSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGD 282
+ + D+YT +L + DL G + HAH+++ GF + + + LI +Y KC GD
Sbjct: 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-GD 237
Query: 283 MRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342
+ VF+ +P+ D + WN MISGY + E + L F + + PD + VIS
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 343 ACSNLSP-SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTV 401
AC L LG+++H +K + +SV N+L+ MY G+ +A ++F RM + V
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVD-VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355
Query: 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456
S +MI+GY ++G+ +AL + M + N+ P IT SVLSACA G + G K
Sbjct: 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TF +L+ G G+ LH LK V ++S I +YSKCG
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG------------ 273
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFK 120
I AR +FD +P+ V++N++++ YA G +E AL L+
Sbjct: 274 -------------------DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 121 DMREKRFDTDGFTLSGLITASSN--NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178
+MR+ D FT S +I S L KQ H I GF N +L+ YS+ G
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
Query: 179 FLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238
+++A+ VF + K+ +SWN+++ YG H G +A+++F+ M++ + + T ++L
Sbjct: 375 RMEDARNVF-DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 239 TA--FTSLED 246
+A ++ L +
Sbjct: 434 SACRYSGLSE 443
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 9e-20
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 33/131 (25%)
Query: 555 PGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAGYVPD------------- 601
PG W E KK ++ DGSHP KE E+ +++K G VP+
Sbjct: 1 PGCVWSEGKK----TLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 602 -----KEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGREIT 656
K K L H+EK A+A+GLL+T I V+K R+CGDCH ++I+ GREI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT---RIIKVLK--RMCGDCHEFFRYIAKYTGREII 105
Query: 657 VRDTYRFHCFK 667
VRD RFH FK
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-14
Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 3/184 (1%)
Query: 316 DQALGCFKKLNRVGYHPDDCSFVCVISACSN-LSPSLGKQIHALTIKIEIRSNRISVNNA 374
+QAL + + + D+ ++V + C + G ++ + + S + + NA
Sbjct: 68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLGVRLGNA 126
Query: 375 LVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT 434
+++M+ + G L A +F +MPE + S N ++ GYA+ G EAL L+ ML + P
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLI 494
TF VL C +A G++ + + FGFE + + + +I + + G + A +
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVV-RFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 495 EAMP 498
+ MP
Sbjct: 246 DRMP 249
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 94 PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITA 140
PD+V+YNTLI Y G E AL LF +M+++ + +T S LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447
+ V+ N++I GY + G EAL+LF M + I P T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 64 NVFSFNVLLAAYARQLRIASARQLFDQIP----QPDLVSYNTLISAYAD 108
+V ++N L+ Y ++ ++ A +LF+++ +P++ +Y+ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 97 VSYNTLISAYADCGDTESALSLFKDMREKRF 127
V+YN+LIS Y G E AL LFK+M+EK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 296 PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346
PD+V +NT+I GY +K + ++AL F ++ + G P+ ++ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKV-EEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 93 QPDLVSYNTLISAYADCGDTESALSLFKDMR 123
+PD+V+YNTLI G + A+ L +M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 VSYNTLISAYADCGDTESALSLFKDMREKRF 127
V+YNTLI G E AL LFK+M+E+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQT 60
TF +++ L K HA ++ P + + LYSK G + A + F++
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQIPQ----PDLVSYNTLISAYADCGDTESAL 116
N+ S+N L+A Y R A ++F+++ P+ V++ ++SA G +E
Sbjct: 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446
Query: 117 SLFKDMRE 124
+F+ M E
Sbjct: 447 EIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 3e-04
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 373 NALVAMYSKCGNLEDARRLFDRMPEH----NTVSLNSMIAGYAQ 412
N L+ Y K G +E+A +LF+ M + N + + +I G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 96 LVSYNTLISAYADCGDTESALSLFKDMREKR 126
L +YN L+ A A GD + AL++ ++M+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 194 KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241
D V++N+++ Y + + EAL+LF EM + ++YT + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 197 VSWNSMVVAYGQHREGLEALQLFQEMVS 224
V++NS++ Y + + EAL+LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 69/326 (21%), Positives = 139/326 (42%), Gaps = 35/326 (10%)
Query: 45 SKCGCLSAAHHAFNQTQHA----NVFSFNVLLAAYARQLRIASARQ----LFDQIPQPDL 96
+K G + A F++ +A NV +F L+ AR ++A A + + +PD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 97 VSYNTLISAYADCGDTESALSLFKDMR--EKRFDTDGFTLSGLITASSNN------LCLI 148
V +N LISA G + A + +M+ D D T+ L+ A +N +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 149 KQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEI---KDEVSWNSMVVA 205
+ +H I + Y NS C S+ G D A ++ +M + DEV ++++V
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNS---C-SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 206 YGQHREGLEALQLFQEMVS--LQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFH 263
G + +A ++ Q+ ++LG Y+ S++ A ++ ++ L+ + +
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYS--SLMGACSNAKNWKKALELYEDIKSIKLR 716
Query: 264 QNSHIGSGLIDLYAKCSGDMRD-CMKVFEEIPQ----PDLVLWNTMISGYSQKEEYSDQA 318
+ LI A C G+ ++V E+ + P+ + ++ ++ S++++ +D
Sbjct: 717 PTVSTMNALIT--ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKDDADVG 773
Query: 319 LGCFKKLNRVGYHPDDCSFVCVISAC 344
L + G P+ C+ C
Sbjct: 774 LDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 295 QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQ 354
+ D L+ T+IS + K D F ++ G + +F +I C+ + + K
Sbjct: 469 KADCKLYTTLISTCA-KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR-AGQVAKA 526
Query: 355 IHALTIKI--EIRSNRISVNNALVAMYSKCGNLEDARRLFDRM-----------PEHNTV 401
A I ++ +R+ V NAL+ S CG R FD + P+H TV
Sbjct: 527 FGAYGIMRSKNVKPDRV-VFNALI---SACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK-YFSM 460
+++ A G A +++ + E NI T + +++C+ G Y M
Sbjct: 583 G--ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
Query: 461 MKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497
K G +P+ +S ++D+ G AG L A +++
Sbjct: 641 KKK--GVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.62 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.38 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.37 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.31 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.29 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.27 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.2 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.15 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.12 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.11 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.06 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.03 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.03 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.96 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.96 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.94 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.94 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.9 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.88 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.87 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.85 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.83 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.81 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.8 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.77 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.74 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.74 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.74 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.68 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.66 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.66 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.57 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.47 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.37 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.37 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.29 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.26 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.18 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.18 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.08 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.08 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.9 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.87 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.78 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.78 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.77 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.74 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.49 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.26 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.06 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.0 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.98 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.96 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.93 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.84 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.76 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.67 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.55 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.41 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.33 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.26 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.23 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.07 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.05 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.92 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.72 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.5 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.29 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.25 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.19 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.13 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.11 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.97 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.86 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.68 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.58 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.5 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.18 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.71 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 93.63 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.58 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.46 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.32 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.23 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.02 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.59 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.89 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.84 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.79 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.56 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.43 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.22 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.19 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.92 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.64 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.39 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 89.66 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.47 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 89.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.28 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.55 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.38 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.46 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 87.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.21 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 87.17 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 86.48 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.41 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.39 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.15 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 86.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.53 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.27 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 84.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.61 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.54 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.36 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.9 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 83.59 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.1 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.07 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.04 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.89 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 81.89 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.63 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.45 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 80.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 80.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.58 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-133 Score=1140.83 Aligned_cols=669 Identities=36% Similarity=0.624 Sum_probs=658.4
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHH
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYA 76 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~ 76 (677)
||+++|.+|++.|++++|.++|+.|.+.|+.||.++|+.++++|++.+++..+.++|..+.+ +|+.++|.||.+|+
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHH
Q 037537 77 RQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 77 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~ 154 (677)
++|++++|.++|+.|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..++ .++++|..
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 155 AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
+.+.|+.||..+||+||.+|+++|++++|.++|++| ..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|+ +++|.++|++|.++|+++||+||.+|+++ |+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~vs~~~mi~~~~~~-g~ 470 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-IDKALEVFHNIPEKDVISWTSIIAGLRLN-NR 470 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-HHHHHHHHHhCCCCCeeeHHHHHHHHHHC-CC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 315 SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
.++|+++|++|.. +++||..||+++|.+|++.| ++.++++|..+.+.|+.++ ..++|+||++|+|+|++++|.++|+
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~-~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD-GFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc-ceechHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999986 69999999999999999999 9999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHH
Q 037537 394 RMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEH 473 (677)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 473 (677)
.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.+|+.|+..+
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999977799999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHH-----------------HHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA-----------------LKAANHFLQLEPSNAVPYVMLANIYAASGKW 536 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~ 536 (677)
|++|+++|+|+|++++|.+++++|+.+|+..+ +.+++++++++|+++..|+.|+++|+..|+|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence 99999999999999999999999999999876 6788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCccc-----------hhhh
Q 037537 537 EEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAGYVPD-----------KEKR 605 (677)
Q Consensus 537 ~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd-----------~~~~ 605 (677)
++|.++++.|+++|++|+||+|||++++++|.|++||.+||+.++||..|+++..+|++.||+|| |+..
T Consensus 708 ~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~ 787 (857)
T PLN03077 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDI 787 (857)
T ss_pred HHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 6788
Q ss_pred hhhhhHHHHHHHhhccCCCCCcEEEEecccccCCccchhhhHhhhcCceEEEecCCccccccCccccCCC
Q 037537 606 LVHHSEKLAVAFGLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGD 675 (677)
Q Consensus 606 ~~~~~~~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~ 675 (677)
+++||||||+|||||++|||.||||+||||+|+|||+++|+||++++|+|||||++|||||+||+|||+|
T Consensus 788 ~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 788 FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-120 Score=1008.10 Aligned_cols=580 Identities=36% Similarity=0.618 Sum_probs=569.0
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcC-CCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHH
Q 037537 94 PDLVSYNTLISAYADCGDTESALSLFKDMREKR-FDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSL 170 (677)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~l 170 (677)
++..+|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.+. .+.++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999999864 78999999999999999988 899999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHH
Q 037537 171 LTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 171 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 250 (677)
+++|+++|++++|.++|++| +.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m-~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM-PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC-CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~ 330 (677)
.++|..+.+.|+.+|..++|+|+++|+++|+ +++|.++|++|+++|+++||+||.+|++. |+.++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~~~vt~n~li~~y~~~-g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGD-IEDARCVFDGMPEKTTVAWNSMLAGYALH-GYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCC-HHHHHHHHHhCCCCChhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999 99999999999999999999999999999 999999999999999999
Q ss_pred CCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHH
Q 037537 331 HPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAG 409 (677)
Q Consensus 331 ~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~ 409 (677)
.||..||++++.+|++.+ ++.+.++|..+.+.|+.++ ..++|+||++|+|+|++++|.++|++|.+||+++||+||.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD-IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC-eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 999999999999999999 9999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHH
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (677)
|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+.+|+.|+..+|++||++|+|+|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCCCChHH-----------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 490 AERLIEAMPFNPGSIA-----------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~-----------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
|.+++++|+..|+..+ +.+++++++++|++..+|+.|+++|++.|+|++|.+++++|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999998766 66788899999999999999999999999999999999999999999
Q ss_pred cCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCccc------------hhhhhhhhhHHHHHHHhhc
Q 037537 553 KKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAGYVPD------------KEKRLVHHSEKLAVAFGLL 620 (677)
Q Consensus 553 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd------------~~~~~~~~~~~la~~~~~~ 620 (677)
|.||+|||++++++|.|++||.+||+..+||+.|+++..+|++.||.|| |+..+.+||||||+|||||
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999998 7778999999999999999
Q ss_pred cCCCCCcEEEEecccccCCccchhhhHhhhcCceEEEecCCccccccCccccCCCCC
Q 037537 621 STSYGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677 (677)
Q Consensus 621 ~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~~~ 677 (677)
++|||.||||+||||+|+|||+++|+||++++|+|||||++|||||+||+|||+|||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-82 Score=724.92 Aligned_cols=645 Identities=25% Similarity=0.367 Sum_probs=558.4
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHH
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYA 76 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~ 76 (677)
+++.++.++.+.|++++|..+++.|.+.|++|+..+|..++..|.+.+.++.|.++|..+.+ +++.++|.|+.+|+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999998877 78889999999999
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHH
Q 037537 77 RQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 77 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~ 154 (677)
++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..++ .++++|..
T Consensus 133 ~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888 89999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 155 AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
+.+.|+.+|+.++|+||.+|+++|++++|.++|++| +.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m-~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM-PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC-CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|+ +++|.++|++|.+||.++||+||.+|++. |+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~~s~n~li~~~~~~-g~ 369 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS-WGEAEKVFSRMETKDAVSWTAMISGYEKN-GL 369 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC-HHHHHHHHhhCCCCCeeeHHHHHHHHHhC-CC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 315 SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
+++|+++|++|.+.|+.||..||+++|.+|++.+ ++.+.++|..+.+.|+.++ ..++|+||++|+++|++++|.++|+
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY-VVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHH
Q 037537 394 RMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEH 473 (677)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 473 (677)
+|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.+|.+|++.|.++.+.+++..+.+. |+.|+..+
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~ 526 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFL 526 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcccee
Confidence 99999999999999999999999999999999986 58999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQK 553 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 553 (677)
+++||++|+|+|++++|.++|++| .| |..+|++|+.+|++.|+.++|.++|++|.+.|++|
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~--~~-----------------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH--EK-----------------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc--CC-----------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999998 43 34556666666666666666666666666666655
Q ss_pred CCceeEEEECCE-EE-----------EEEe-CCCCCCCHHHHH----------HHHHHHHHHHHHcCCccch---hhhhh
Q 037537 554 KPGFSWIEVKKQ-MH-----------VFVA-EDGSHPMIKEIH----------NYLEEMSRKMKQAGYVPDK---EKRLV 607 (677)
Q Consensus 554 ~~~~s~~~~~~~-~~-----------~~~~-~~~~~~~~~~i~----------~~l~~l~~~~~~~g~~pd~---~~~~~ 607 (677)
+.- ++..+-.. .| .-+. .....|.. +.| ..+++..+.++++++.||. ..++.
T Consensus 588 d~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 588 DEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred Ccc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 431 11110000 00 0000 00001111 111 1355666666677777771 11111
Q ss_pred ---hh-----hHHHH-HHHhhccCCCCCcEEEEecccccCCccchhhhHhhhcCc--------eEEEecCCccccccCcc
Q 037537 608 ---HH-----SEKLA-VAFGLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGR--------EITVRDTYRFHCFKDGR 670 (677)
Q Consensus 608 ---~~-----~~~la-~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~--------~i~~~d~~~~h~f~~g~ 670 (677)
.| .|+.+ ..+.+.+..++..+.+.+-+...|++.++.+....|..+ ..|.- .+..|-|..|.
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~~~f~~~d 744 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKVHAFLTDD 744 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEEEEEecCC
Confidence 11 12222 234454444444433333478899999999988777655 33332 36789998776
Q ss_pred ccC
Q 037537 671 CSC 673 (677)
Q Consensus 671 csc 673 (677)
-|-
T Consensus 745 ~~h 747 (857)
T PLN03077 745 ESH 747 (857)
T ss_pred CCC
Confidence 554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=601.58 Aligned_cols=462 Identities=24% Similarity=0.384 Sum_probs=435.1
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHH
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNL-VPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAY 75 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~ 75 (677)
+|+.+|.++.+.|++++|+++|+.|...+ +.|+..+|+.++.+|++.++++.|.++|..|.+ ||+.++|.|+.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 47899999999999999999999999865 789999999999999999999999999999987 9999999999999
Q ss_pred HhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHH
Q 037537 76 ARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHC 153 (677)
Q Consensus 76 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~ 153 (677)
+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+. .++++|.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH
Q 037537 154 LAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYT 233 (677)
Q Consensus 154 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 233 (677)
.+.+.|+.+|..++|+||++|+++|++++|.++|++| +.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..|
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCC
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~ 313 (677)
|++++.+|++.|+++.|+++|..|.+.|+.||..++++|+++|+++|+ +++|.++|++|.+||+++||+||.+|++. |
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G 405 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPRKNLISWNALIAGYGNH-G 405 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCCCCeeeHHHHHHHHHHc-C
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHH-hhcccCccchhHHHHHHHHccCCHHHHHHH
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIK-IEIRSNRISVNNALVAMYSKCGNLEDARRL 391 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 391 (677)
+.++|+++|++|.+.|+.||..||+++|.+|++.| ++.|.+++..+.+ .|+.|+ ..+|++++++|++.|++++|.++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999876 588888 88889999999999988888888
Q ss_pred HhcCC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 392 FDRMP-EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 392 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+. |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 88886 47888888888888888888888888888865 4454 568888888888888888888888888877 7654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=580.89 Aligned_cols=506 Identities=15% Similarity=0.187 Sum_probs=475.0
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHhhccc-----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHH
Q 037537 30 VPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLIS 104 (677)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 104 (677)
..++...|..++..|.+.|++++|.++|+.|.+ ++...++.++..|.+.|.+++|.++|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356778899999999999999999999999988 455677888899999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 037537 105 AYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDE 182 (677)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 182 (677)
+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.++ .+.+++..|.+.|+.||..+|++||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhhc---CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHhHHHHHHHHHccCCChHHHHHHHHHH
Q 037537 183 AKRVFYEM---GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVS--LQLGLDMYTLASILTAFTSLEDLVGGLQFHAHL 257 (677)
Q Consensus 183 A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (677)
|.++|++| +..||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 7789999999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC----CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC
Q 037537 258 IKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP----QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 258 ~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~ 333 (677)
.+.|+.|+..+|+++|.+|++.|+ +++|.++|++|. .||.++|+++|.+|++. |+.++|+++|++|.+.|+.||
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~-G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA-GDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999 999999999997 48999999999999999 999999999999999999999
Q ss_pred cchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHH
Q 037537 334 DCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIA 408 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~ 408 (677)
..+|+++|.+|++.| .+.+.+++..+.+.|+.|+ ..+||+||++|++.|++++|.++|++|.+ ||..+|+++|.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999 9999999999999999999 99999999999999999999999999963 89999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------CCHHHHHHHHHHhHHhc
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----T-------------------GKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~m~~~~ 465 (677)
+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~- 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA- 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-
Confidence 999999999999999999999999999999999977642 1 2246799999999998
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
|+.||..+|+.++..+.+.+..+.+..+++.|...|. +++..+|++|++++.+. .++|..++++
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~--------------~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD--------------SQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC--------------CcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 9999999999999999999999999999999975543 35788999999998432 3689999999
Q ss_pred HHhCCCccCC
Q 037537 546 MRDRGVQKKP 555 (677)
Q Consensus 546 m~~~g~~~~~ 555 (677)
|.+.|+.|+-
T Consensus 906 m~~~Gi~p~~ 915 (1060)
T PLN03218 906 AASLGVVPSV 915 (1060)
T ss_pred HHHcCCCCCc
Confidence 9999999764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-64 Score=562.42 Aligned_cols=491 Identities=14% Similarity=0.155 Sum_probs=338.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCC
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLV-PFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (677)
|..++..|.+.|+++.|+++|+.|.+.|+ +++..+++.++..|.+.|.+++|.++|..|..||..+||.|+.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 55667777778888888888888888774 45555666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHhccCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHH
Q 037537 81 IASARQLFDQIPQ----PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 81 ~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~ 154 (677)
++.|.++|+.|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.++ .+.+++..
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6666666666653 56666666666666666666666666666666666666666666666666666 56666666
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-----CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 037537 155 AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-----GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL 229 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 229 (677)
|.+.|+.||..+|+.||.+|++.|++++|.++|++| +..||.++|++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 666666666666666666666666666666666666 235666666666666666666666666666666666666
Q ss_pred CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC----CCChhhHHHHH
Q 037537 230 DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP----QPDLVLWNTMI 305 (677)
Q Consensus 230 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~----~~~~~~~~~li 305 (677)
+..+|+.+|.+|++.|++++|.++|..|.+.|+.||..+|++++++|++.|+ +++|.++|++|. .||..+|+++|
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666 666666666664 35666666666
Q ss_pred hhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC
Q 037537 306 SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN 384 (677)
Q Consensus 306 ~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 384 (677)
.+|++. |++++|.++|++|...|+.||..||+++|.+|++.| .+.+.+++..|.+.|+.|+ ..+|++|+.+|++.|+
T Consensus 692 ~ay~k~-G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 692 GACSNA-KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD 769 (1060)
T ss_pred HHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC
Confidence 666666 666666666666666666666666666666666666 6666666666666666666 6666666666666666
Q ss_pred HHHHHHHHhcCCC----CCcchHHHHHHHHHH-----------------------cCChHHHHHHHHHHHHCCCCCCHHH
Q 037537 385 LEDARRLFDRMPE----HNTVSLNSMIAGYAQ-----------------------HGIGMEALRLFEWMLETNIPPTNIT 437 (677)
Q Consensus 385 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~-----------------------~g~~~~A~~l~~~m~~~g~~p~~~t 437 (677)
+++|.++|+.|.+ ||..+|++++..|.+ .+..++|+.+|++|++.|+.||..|
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 6666666666643 566666666543221 1223679999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
|+.+|.++...+..+.+..+++.|... +..|+..+|++||+++++. .++|..++++|.
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 999998777888899888888888766 7788899999999998543 478999999984
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-28 Score=282.86 Aligned_cols=531 Identities=13% Similarity=0.100 Sum_probs=406.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhH
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 83 (677)
..+...|+++.|...+..+++.. +.+...+..+...+.+.|++++|.+.+..+.. .+...++.+...|.+.|++++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 45667899999999999998875 55677778888888999999999999988876 456678888889999999999
Q ss_pred HHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHh
Q 037537 84 ARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYC 158 (677)
Q Consensus 84 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~ 158 (677)
|.+.|+.+.+ | +...|..+...+...|++++|.+.|+++.+....+ ......+...+...++ .+..++..+.+.
T Consensus 382 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999988764 3 45667788888889999999999998887654222 2233445555666665 666666666553
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
.+.++.++..+...|...|++++|.+.|+++ . ...+...+..+...+...|++++|.+.|+++...+ +.+..++..
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 4556778888888888999999999998887 2 22345567778888888899999999998887754 235677778
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCC
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~ 313 (677)
+...+...|+.++|...+..+.+.+ +.+...+..+...|.+.|+ .++|..+++++. ..+...|..+...|.+. |
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ-LKKALAILNEAADAAPDSPEAWLMLGRAQLAA-G 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-C
Confidence 8888888888888888888887765 4566677788888888888 888888888875 34567888888888888 8
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHH
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
++++|+..|+++.+.. ..+...+..+...+...+ .+.+...+..+.+. .|+....+..++..+.+.|++++|.+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887643 223445666666677777 88888888777754 3444677888888888888888888888
Q ss_pred hcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 393 DRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 393 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
+.+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~ 768 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPN 768 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 88764 35566777888888888888888888888875 455567777888888888888888888888764 344
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCC-CCCChHH-----------------HHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMP-FNPGSIA-----------------LKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~-----------------~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
+...+..+...|.+.|++++|.+.|+++. ..|+... ....++++++.|+++..+..++.+|.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 67778888888888888888888888762 2333222 34556677788888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 037537 532 ASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~~g~ 551 (677)
..|++++|.++++++.+.+.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 88888888888888887663
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-27 Score=277.43 Aligned_cols=526 Identities=14% Similarity=0.058 Sum_probs=406.5
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 84 (677)
.+...|+++.|...+..+++.+ +.+...+..+...+...|++++|...++.+.+ .+...+..+...+.+.|++++|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 3456788999999998888876 33334444556677788999999999988876 3455677788888899999999
Q ss_pred HHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhhcchh--hHHHHHHHHHHh
Q 037537 85 RQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASSNNLC--LIKQLHCLAIYC 158 (677)
Q Consensus 85 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~--~~~~i~~~~~~~ 158 (677)
...++.+.+ .+...|+.+...+.+.|++++|.++|+++.+. .|+. ..+..+-..+...++ .+...+..+.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 998887764 35567888888899999999999999988764 3443 344444445555555 566666666665
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
.. .+......++..|.+.|++++|.++++++ ...++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..
T Consensus 427 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 427 DP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred CC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 42 23445667778888999999999999888 233466778888899999999999999999887743 224556777
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCC
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~ 313 (677)
+...+...|++++|.+.+..+.+.. +.+..++..+...|.+.|+ .++|...|+++. ..+...+..+...|.+. |
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 581 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELNPQEIEPALALAQYYLGK-G 581 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-C
Confidence 7788888899999999999888765 4567788888888888888 999999988874 24556777888888888 8
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHH
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
++++|+.+++++.... ..+..++..+...+...+ .+.+...+..+.+.. |+.+..+..+...|.+.|++++|...|
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887643 345567777778888888 888888888877653 333677888889999999999999999
Q ss_pred hcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 393 DRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 393 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
+++.+ .+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|...|+.+.+. .|
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~ 734 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---AP 734 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CC
Confidence 88754 356788888999999999999999999998865 556777888888888899999999999988864 56
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCC-CCCChHH------------------HHHHHHHhccCCCCchhHHHHHHHH
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMP-FNPGSIA------------------LKAANHFLQLEPSNAVPYVMLANIY 530 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~------------------~~~~~~l~~l~p~~~~~~~~l~~~y 530 (677)
+..++..+..++.+.|++++|.+.++++. ..|+... ....+++++..|+++..+..++.+|
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66778888888999999999998887762 2333322 5556777788899999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037537 531 AASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 531 ~~~g~~~~a~~~~~~m~~~ 549 (677)
...|+ .+|+.+++++.+.
T Consensus 815 ~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL 832 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh
Confidence 99999 8899988888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=216.93 Aligned_cols=102 Identities=58% Similarity=0.911 Sum_probs=83.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCHHHHHHHHH-HHHHHHHHcCCccch-----------hhhhhhhhHHHHHHHhhccCC
Q 037537 556 GFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLE-EMSRKMKQAGYVPDK-----------EKRLVHHSEKLAVAFGLLSTS 623 (677)
Q Consensus 556 ~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~l~~~~~~~g~~pd~-----------~~~~~~~~~~la~~~~~~~~~ 623 (677)
|+||+++ |.|++||.+||+...+...+. .....++..|+.++. +..+.+||||||+||||+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 7899988 999999999999854444332 222333334443332 34779999999999999998
Q ss_pred CCCcEEEEecc-cccCCccchhhhHhhhcCceEEEecCCcccccc
Q 037537 624 YGEPILVMKNL-RICGDCHNAIKFISAIAGREITVRDTYRFHCFK 667 (677)
Q Consensus 624 ~~~~~~~~~nl-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~f~ 667 (677)
+|+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 77 -----~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 -----RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred -----eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 899998 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-18 Score=205.20 Aligned_cols=514 Identities=12% Similarity=0.054 Sum_probs=282.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhH----------------HHHHHHHHccCChHHHHHHHhhccc--cCh
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLS----------------NHFILLYSKCGCLSAAHHAFNQTQH--ANV 65 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~g~~~~a~~~~~~~~~--~~~ 65 (677)
.+...+.+.|+.++|.+.++++.+.. |.+.... ..+...+.+.|++++|.+.++.+.. |+.
T Consensus 67 ~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~ 145 (1157)
T PRK11447 67 ARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPE 145 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCC
Confidence 34556677778888888887777776 3333322 2233456677788888887777766 222
Q ss_pred hHH-HHH-HHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCC------------
Q 037537 66 FSF-NVL-LAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFD------------ 128 (677)
Q Consensus 66 ~~~-~~l-i~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------ 128 (677)
... ... .......|+.++|++.|+.+.+ | +...+..+...+...|+.++|+..|+++.+....
T Consensus 146 ~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 146 LDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 111 111 1112234777788887777764 3 3445667777788888888888888877543210
Q ss_pred ----CCccc---HHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-Cee
Q 037537 129 ----TDGFT---LSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEV 197 (677)
Q Consensus 129 ----p~~~t---~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~ 197 (677)
++... +...+..+..... .+...+....+....|+. .....-..+...|++++|...|++. ...| +..
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~ 304 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE 304 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 00000 0000100000000 111111111111111111 1112234455667777777777766 2223 455
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHccCCChHHHHHHHHHHHHhCCCC
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTL------------ASILTAFTSLEDLVGGLQFHAHLIKSGFHQ 264 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~------------~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 264 (677)
.+..+...|.+.|++++|+..|++..+..... +...+ ......+.+.|++++|...+..+++.. +.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 66677777777777777777777766543211 11111 111234456677777777777777653 33
Q ss_pred chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhh----------------------------------
Q 037537 265 NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISG---------------------------------- 307 (677)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~---------------------------------- 307 (677)
+...+..+...|...|+ .++|++.|++..+ | +...+..+...
T Consensus 384 ~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 44556666677777777 7777777776542 2 22233333332
Q ss_pred --------hcccCCCHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 308 --------YSQKEEYSDQALGCFKKLNRVGYHPDDC-SFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 308 --------~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
+... |++++|++.|++..+. .|+.. .+..+-..+...| .+.+...+..+++.. |+++.....+..
T Consensus 463 ~~~~~a~~~~~~-g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al 537 (1157)
T PRK11447 463 RLAQQAEALENQ-GKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGL 537 (1157)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 3334 5566666666665543 34332 2333444455555 666666665555422 222334444444
Q ss_pred HHHccCCHHHHHHHHhcCCCCC----c---------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPEHN----T---------VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
.+.+.|+.++|...++.++... . ..+..+...+...|+.++|+.+++. .+++...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 4555566666666665554311 0 0112234456666777777666651 24445556666667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+...|+.++|...|+.+.+. .| +...+..++.+|...|++++|++.++... +..|+++..+
T Consensus 613 ~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---------------~~~p~~~~~~ 674 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLP---------------ATANDSLNTQ 674 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---------------ccCCCChHHH
Confidence 77777777777777777753 34 45667777777777777777777777553 4556666667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 524 VMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 524 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..+..++...|++++|.++++++...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 77777777777777777777776654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-18 Score=199.64 Aligned_cols=532 Identities=11% Similarity=-0.000 Sum_probs=363.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHH--------------
Q 037537 5 VLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSF-------------- 68 (677)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~-------------- 68 (677)
.++.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 3456778899999999999999886 77889999999999999999999999999988 332221
Q ss_pred ---HHHHHHHHhcCChhHHHHHhccCCCC--CcchHHH--HHHHHHhCCChhHHHHHHHHhHhcCCCCCccc-HHHHHHH
Q 037537 69 ---NVLLAAYARQLRIASARQLFDQIPQP--DLVSYNT--LISAYADCGDTESALSLFKDMREKRFDTDGFT-LSGLITA 140 (677)
Q Consensus 69 ---~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a 140 (677)
..+...+.+.|++++|.+.|+...+. +...... ........|+.++|++.|+++.+. .|+... ...+-..
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 23344688899999999999988753 2222111 111122458999999999999876 465443 3333334
Q ss_pred hhcchh--hHHHHHHHHHHhCCC----------------CC---hhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCe
Q 037537 141 SSNNLC--LIKQLHCLAIYCGFD----------------HY---ASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDE 196 (677)
Q Consensus 141 ~~~~~~--~~~~i~~~~~~~g~~----------------~~---~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~ 196 (677)
+...++ .+...+..+.+..-. .+ ...+...+..+-.....+.|...+.+. ...|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 444444 566666666543210 01 111122222222223344555555543 112221
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc-hhhH-----
Q 037537 197 VSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN-SHIG----- 269 (677)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~----- 269 (677)
. .......+...|++++|+..|++..+. .| |...+..+..++.+.|++++|...+..+++..-... ...+
T Consensus 271 ~-~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 271 R-ARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 1 123356677899999999999999885 35 677888888999999999999999999988642221 1112
Q ss_pred -------HHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcc-hHH
Q 037537 270 -------SGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDC-SFV 338 (677)
Q Consensus 270 -------~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~ 338 (677)
..+...+.+.|+ +++|...|++... .+...+..+...+... |++++|++.|++..+. .|+.. .+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~-~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~--~p~~~~a~~ 423 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANN-LAQAERLYQQARQVDNTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRM--DPGNTNAVR 423 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 122446678888 9999999998863 4556777788888888 9999999999999874 45543 333
Q ss_pred HHHHHhhccChhHHHHHHHHHHHhhc--------ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHH
Q 037537 339 CVISACSNLSPSLGKQIHALTIKIEI--------RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMI 407 (677)
Q Consensus 339 ~ll~a~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li 407 (677)
.+...+.....+.+......+..... ... ...+..+...+...|++++|.+.|++..+ | +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~-~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ-NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33333322225555555443221110 001 23456677889999999999999998765 3 455677888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh---------HHHHHHH
Q 037537 408 AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG---------EHYSCMI 478 (677)
Q Consensus 408 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---------~~~~~li 478 (677)
..|.+.|++++|...|+++.+.. +.+...+..+...+...++.++|...++.+... ...++. ..+..+.
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998743 223444444445567789999999998876532 222221 1233456
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHH---------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIA---------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
+.|...|+.++|.++++.-|..+.... ....+++++.+|+++.++..++.+|...|++++|.+.+
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 778889999999999986554443222 66677888999999999999999999999999999999
Q ss_pred HHHHhC
Q 037537 544 RLMRDR 549 (677)
Q Consensus 544 ~~m~~~ 549 (677)
+...+.
T Consensus 661 ~~ll~~ 666 (1157)
T PRK11447 661 AKLPAT 666 (1157)
T ss_pred HHHhcc
Confidence 977653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-19 Score=175.99 Aligned_cols=378 Identities=17% Similarity=0.255 Sum_probs=246.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhH-HHHHHH
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASV-NNSLLT 172 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~-~~~li~ 172 (677)
.+|..+...+-..|++++|+.+|+.|.+. +|+. ..|..+-.++...++ .+.+.+...++. .|+... .+.+-.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 45555666666666666666666666553 2321 122222222222222 222222222211 222211 122223
Q ss_pred HHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHH
Q 037537 173 CYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 173 ~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~ 249 (677)
.....|++.+|...+.+. ...| =.+.|+.|...+-.+|+..+|+.-|++.+. +.|+ ...|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 334456666666666554 2233 245677777777777777777777776665 4444 3455566666666666666
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC-hhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD-LVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
|...+..+.... +....++..+...|...|. ++-|+..+++..+ |+ ...||.|..++-.. |+..+|.+.|.+..
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~-ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGL-LDLAIDTYKRALELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEecccc-HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHH
Confidence 666665555432 2233444555555555566 6666666665542 33 24566666666666 66666666666555
Q ss_pred hcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CC-cchH
Q 037537 327 RVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HN-TVSL 403 (677)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~ 403 (677)
. +.|+ .....+.|...|...|.+++|..+|....+ |. ....
T Consensus 348 ~--l~p~----------------------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~ 391 (966)
T KOG4626|consen 348 R--LCPN----------------------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH 391 (966)
T ss_pred H--hCCc----------------------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh
Confidence 4 2233 266789999999999999999999998766 32 3468
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLL 481 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 481 (677)
|.|...|-++|+.++|+..|++.+. ++|+ ...|+.+-..+-..|+++.|.+.+...+ .+.|. .+..+.|...|
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTFAEAHSNLASIY 466 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHHHHHHhhHHHHh
Confidence 9999999999999999999999998 7898 5789999999999999999999999888 46776 67888999999
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHH
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEV 539 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a 539 (677)
-.+|++.+|..-+++. ++++|+-+.+|..++-..---.+|.+-
T Consensus 467 kDsGni~~AI~sY~~a---------------LklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTA---------------LKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred hccCCcHHHHHHHHHH---------------HccCCCCchhhhHHHHHHHHHhcccch
Confidence 9999999999999876 578888888888887776666666663
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=187.98 Aligned_cols=302 Identities=15% Similarity=0.147 Sum_probs=230.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc---hhhHHHHHHHHHHcC
Q 037537 204 VAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN---SHIGSGLIDLYAKCS 280 (677)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 280 (677)
..+...|++++|+..|+++.+.+. .+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556667777777777766421 2334566666666677777777777776665432111 245677888888888
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHH
Q 037537 281 GDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHA 357 (677)
Q Consensus 281 ~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~ 357 (677)
+ +++|..+|+++.+ .+..+++.++..+.+. |++++|++.|+.+.+.+..++....
T Consensus 122 ~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~-------------------- 179 (389)
T PRK11788 122 L-LDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEI-------------------- 179 (389)
T ss_pred C-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHH--------------------
Confidence 8 9999999998864 5667899999999998 9999999999999876433221111
Q ss_pred HHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037537 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT 434 (677)
Q Consensus 358 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 434 (677)
...+..+...|.+.|++++|...|+++.+ | +...+..+...|.+.|++++|+++|+++.+.+....
T Consensus 180 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 180 -----------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred -----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 23356678888999999999999998764 3 355788888999999999999999999998542222
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..++..+..++...|++++|...++.+.+. .|+...+..++..|.+.|++++|.++++++. +
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l---------------~ 310 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQL---------------R 310 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH---------------H
Confidence 467888999999999999999999999865 6777778899999999999999999998773 4
Q ss_pred cCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCcee
Q 037537 515 LEPSNAVPYVMLANIYAA---SGKWEEVATIRRLMRDRGVQKKPGFS 558 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~~~s 558 (677)
..|++ ..+..++..+.. .|+.+++..++++|.+++++++|.+.
T Consensus 311 ~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 311 RHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred hCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 45654 466666766654 56999999999999999999999743
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-15 Score=171.22 Aligned_cols=519 Identities=11% Similarity=0.011 Sum_probs=284.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHh
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLF 88 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f 88 (677)
..|++++|...+++.++.. |-+..++..|...|.+.|+.++|+...++..+ |+-..+..++..+ ++.++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3478888888888888877 55677888888888888888888888888777 3222222222222 6666666666
Q ss_pred ccCCC--CC-cchHHHHHHH--------HHhCCChhHHHHHHHHhHhcCCCCCcccHHHH-HHHhhcchh--hHHHHHHH
Q 037537 89 DQIPQ--PD-LVSYNTLISA--------YADCGDTESALSLFKDMREKRFDTDGFTLSGL-ITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 89 ~~m~~--~~-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~~~--~~~~i~~~ 154 (677)
+++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...++ .+..++..
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 66643 22 2222222222 3333 22332222 2221122223322222 444444444 34444444
Q ss_pred HHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CCHh
Q 037537 155 AIYCGFDHYASVNNSLLTCYSR-NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLG-LDMY 232 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~ 232 (677)
+.+.+. .+......|-.+|.. .++ +++..+++.. ...|...+..+...|.+.|+.++|.++++++...-.. |+..
T Consensus 208 L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~-lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 208 ARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG-IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh-cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 444432 222223333334444 233 4444444432 3334444555555555555555555555544322111 2222
Q ss_pred HHHHH------------------------------HHHHccCCChH-----------------------------HHHHH
Q 037537 233 TLASI------------------------------LTAFTSLEDLV-----------------------------GGLQF 253 (677)
Q Consensus 233 t~~~l------------------------------l~a~~~~~~~~-----------------------------~a~~~ 253 (677)
++.-+ +..+.+.++++ ++.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 22111 11122222222 22222
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC----hhhHHHHHhhhcccCCC---HHHHHHH---
Q 037537 254 HAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD----LVLWNTMISGYSQKEEY---SDQALGC--- 321 (677)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~~~~---~~~A~~l--- 321 (677)
+..+.+.. +-+....--+.-...+.|+ .++|.++|++... ++ ...-+-++..|.+. +. ..+++.+
T Consensus 365 ~~~~y~~~-~~~~~~l~q~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 365 ARLLYQQE-PANLTRLDQLTWQLMQNGQ-SREAADLLLQRYPFQGDARLSQTLMARLASLLESH-PYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHccc-HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC-CcccchHHHHHhccc
Confidence 22222221 1122222222223344566 7777777776643 11 22333555556555 43 3333333
Q ss_pred ---------HHH----------Hhh-cCCCCC--cchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 322 ---------FKK----------LNR-VGYHPD--DCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 322 ---------~~~----------m~~-~g~~p~--~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
..+ ... .+..|+ .......+..|...+ .+.+...+....... |+ ......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd-~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PD-AWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--Cc-hHHHHHHHHH
Confidence 111 111 112233 222222223333335 555666555544433 33 2223334444
Q ss_pred HHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++.. +++...+..+.......|++++|..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999887654 444556777778888999999999999888754 2233333344445556699999999
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC-CCCCChHH------------------HHHHHHHhccCC
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM-PFNPGSIA------------------LKAANHFLQLEP 517 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~------------------~~~~~~l~~l~p 517 (677)
.++...+ +.|+...|..+..++.+.|+.++|.+.+++. ...|+... ....+++++++|
T Consensus 598 ~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9988875 4677888888888899999999999988876 33455443 556778889999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
+++..+..+..+|...|++++|...+++..+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=180.06 Aligned_cols=293 Identities=14% Similarity=0.097 Sum_probs=234.5
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-cC------hhHHHHHHHHHHhcCCh
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-AN------VFSFNVLLAAYARQLRI 81 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~g~~ 81 (677)
....|+++.|...+..+++.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 446688888999999998875 55667888888888889999999988888776 21 24577788888888999
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHh
Q 037537 82 ASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYC 158 (677)
Q Consensus 82 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~ 158 (677)
+.|..+|+.+.+ ++..+++.++..+.+.|++++|.+.++.+.+.+..++....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 999999888865 45667888888899999999999999888775422211100
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
...+..+...+.+.|++++|.+.|+++ ...| +...+..+...+.+.|++++|+++|+++...+......++..
T Consensus 180 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 180 -----AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 112356677888999999999999998 2233 355788888999999999999999999987543333567888
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcc---c
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQ---K 311 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~---~ 311 (677)
+..++...|+++.|.+.+..+.+. .|+..++..+...|.+.|+ +++|.++|+++. .|+..+++.++..+.. .
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~-~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEG-PEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 999999999999999999999887 4666677899999999999 999999999875 4888899988887764 4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCcc
Q 037537 312 EEYSDQALGCFKKLNRVGYHPDDC 335 (677)
Q Consensus 312 ~~~~~~A~~l~~~m~~~g~~p~~~ 335 (677)
|+.++++.+|++|.+.+++|++.
T Consensus 332 -g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 -GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -ccchhHHHHHHHHHHHHHhCCCC
Confidence 58899999999999988888765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-15 Score=167.67 Aligned_cols=522 Identities=13% Similarity=0.030 Sum_probs=285.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHH----
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAA---- 74 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~---- 74 (677)
+..|.+.+...|+.++|+...++.++.. |.|...+..+ ..+ ++.++|..+++++.+ .+..++..+...
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~ 155 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQ 155 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhcc
Confidence 4567889999999999999999999886 4444444444 322 889999999999998 345556666555
Q ss_pred ----HHhcCChhHHHHHhccCCCCC--cchHHH-HHHHHHhCCChhHHHHHHHHhHhcCCCCCccc-HHHHHHHhhcc-h
Q 037537 75 ----YARQLRIASARQLFDQIPQPD--LVSYNT-LISAYADCGDTESALSLFKDMREKRFDTDGFT-LSGLITASSNN-L 145 (677)
Q Consensus 75 ----~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~-~ 145 (677)
|.+.+....+++ .....|+ ...... +...|.+.|++++|++++.++.+.+ |.... ...+-.++... +
T Consensus 156 ~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 156 NALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred chhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhC
Confidence 777766666666 3333344 443444 4899999999999999999999985 33333 33333344432 2
Q ss_pred h-hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcC----CCCCeeeHHHH------------------
Q 037537 146 C-LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMG----EIKDEVSWNSM------------------ 202 (677)
Q Consensus 146 ~-~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~~l------------------ 202 (677)
. .+..+ .+..+..++.++.++.+.|.+.|+.++|.+++++++ ..|+..+|--+
T Consensus 232 ~~~a~al----~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 232 DDRLLAL----QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred HHHHHHH----hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 2 22222 222445788899999999999999999999999981 11222222111
Q ss_pred ------------HHHHHhCCCch-----------------------------HHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 037537 203 ------------VVAYGQHREGL-----------------------------EALQLFQEMVSLQLGL-DMYTLASILTA 240 (677)
Q Consensus 203 ------------i~~~~~~g~~~-----------------------------~A~~~~~~m~~~g~~p-d~~t~~~ll~a 240 (677)
+..+.++++++ ++.+.++.|.+.. | +....--+--.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~ 385 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQ 385 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 22222333332 2222222222210 1 22222222222
Q ss_pred HccCCChHHHHHHHHHHHHh-C-CCCchhhHHHHHHHHHHcCCCHHHHHHH----------------------------H
Q 037537 241 FTSLEDLVGGLQFHAHLIKS-G-FHQNSHIGSGLIDLYAKCSGDMRDCMKV----------------------------F 290 (677)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~~A~~~----------------------------f 290 (677)
....|+.++|.+++.+.... + -..+....+-|+..|.+.+. +....++ +
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY-LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc-ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 34455666666666655542 1 11233344455555555432 1111111 1
Q ss_pred hhCCC---C--ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhc
Q 037537 291 EEIPQ---P--DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEI 364 (677)
Q Consensus 291 ~~~~~---~--~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~ 364 (677)
..... + +...|..+...+.. +++++|+..|.+.... .|+......+..++...| .+.+...+..+...
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~--~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD--TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh--CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 11110 1 23344444444432 4445555555544432 244333222222233445 55555555544322
Q ss_pred ccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMI---AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 365 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
.++ ...+..+...+.+.|+.++|...|++..+.++..++... ......|++++|+..|++.++ +.|+...+..+
T Consensus 539 ~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~L 615 (987)
T PRK09782 539 DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVAR 615 (987)
T ss_pred CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 122 223344445555556666666655554443222222222 122223566666666666555 23455555555
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC-CCCCChHH--------------
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM-PFNPGSIA-------------- 505 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~-------------- 505 (677)
..++.+.|+.++|...++...+. .|+ ...+..+...+...|++++|++.+++. ...|+...
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 55555666666666666555532 332 444455555555566666666555543 12233222
Q ss_pred ----HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 506 ----LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 506 ----~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
....+++++++|++..+.....+...+..+++.|.+-+++.-.-+.
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4445566789999999999999999999999999988877655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-16 Score=171.85 Aligned_cols=417 Identities=11% Similarity=0.002 Sum_probs=270.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCC
Q 037537 37 SNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGD 111 (677)
Q Consensus 37 ~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~ 111 (677)
+......+.+.|++++|...|++.+. |+...|..+..+|.+.|++++|+..++...+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44556677788889999988888777 7777888888888888999888888887664 3 45578888888888899
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcC
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMG 191 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 191 (677)
+++|+.-|......+-. +......+ +.-+.+......+...++.-
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~---------------------------------~~~~l~~~a~~~~~~~l~~~- 254 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQA---------------------------------VERLLKKFAESKAKEILETK- 254 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHhcC-
Confidence 98888887665543211 10000000 00000000112222222221
Q ss_pred CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-hHHHHHHH---HHccCCChHHHHHHHHHHHHhC-C-CCc
Q 037537 192 EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM-YTLASILT---AFTSLEDLVGGLQFHAHLIKSG-F-HQN 265 (677)
Q Consensus 192 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~---a~~~~~~~~~a~~~~~~~~~~g-~-~~~ 265 (677)
.++..++..+.. |....+......-+.+-.+ ..|+. ..+..+.. -....++++.|.+.+..+++.+ . +..
T Consensus 255 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 255 -PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred -CCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 122223332222 2221122222111111111 11110 00100000 0122355667777777766654 2 223
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC-hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD-LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
...++.+...|...|+ +++|...|++..+ |+ ...|..+...+... |++++|+..|++..+. .|+.
T Consensus 331 a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~--~p~~-------- 398 (615)
T TIGR00990 331 AIALNLRGTFKCLKGK-HLEALADLSKSIELDPRVTQSYIKRASMNLEL-GDPDKAEEDFDKALKL--NSED-------- 398 (615)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCC--------
Confidence 3456666677777777 8888888877653 33 44667777777777 8888888888887653 3432
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHH
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 419 (677)
+.++..+...|...|++++|...|++..+ | +...|..+...+.+.|++++|
T Consensus 399 --------------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 399 --------------------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 55677788889999999999999988764 3 456778888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-H-------HHHHHHHHHhhcCChHHHH
Q 037537 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-E-------HYSCMIDLLGRAGKLTDAE 491 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~~~A~ 491 (677)
+..|++.++.. +.+...+..+...+...|++++|...|+...+. .|+. . .++.....+...|++++|.
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999998742 344778888899999999999999999998754 3431 1 1222223344569999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 492 RLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 492 ~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+++++. ++++|++...+..|+.+|.+.|++++|++.+++..+.
T Consensus 529 ~~~~kA---------------l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 529 NLCEKA---------------LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHH---------------HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 998875 4677888889999999999999999999999998664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=159.64 Aligned_cols=417 Identities=16% Similarity=0.145 Sum_probs=269.8
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcch
Q 037537 69 NVLLAAYARQLRIASARQLFDQIPQPDL---VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNL 145 (677)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 145 (677)
..|..-.-+.|++++|++.-...-+.|. ...-.+-..+.+..+++....--....+.. ..-..+|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~y----------- 119 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAY----------- 119 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHH-----------
Confidence 3455555678999999987665544322 222233356667667766554433332221 1122334
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 037537 146 CLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMV 223 (677)
Q Consensus 146 ~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 223 (677)
..+.+.+-..|++++|..+++.+ ...| .+..|-.+..++...|+.+.|.+.|.+.+
T Consensus 120 ----------------------sn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 120 ----------------------SNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred ----------------------HHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 44555555566666666666655 2222 34456666666666666666666666655
Q ss_pred HCCCCCCHhHHHHHHHH-HccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CCh-h
Q 037537 224 SLQLGLDMYTLASILTA-FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PDL-V 299 (677)
Q Consensus 224 ~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~-~ 299 (677)
+ +.|+.+...+-+.- ....|++.+|..-+..+++.. +.-..+|+.|...+-..|+ +..|..-|++... |+. .
T Consensus 178 q--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Ge-i~~aiq~y~eAvkldP~f~d 253 (966)
T KOG4626|consen 178 Q--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGE-IWLAIQHYEEAVKLDPNFLD 253 (966)
T ss_pred h--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcch-HHHHHHHHHHhhcCCCcchH
Confidence 5 33444433332222 223455666666555555442 2223455555555555555 6666666665543 221 3
Q ss_pred hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDC-SFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 300 ~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
.|-.|-..|... +.+++|+..|.+... ..|+.. .+..+-..+-..| ++.+..-++..+. ++|+.+..|+.|..
T Consensus 254 AYiNLGnV~ke~-~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 254 AYINLGNVYKEA-RIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLAN 328 (966)
T ss_pred HHhhHHHHHHHH-hcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHH
Confidence 444555555555 556666665555443 344432 1222222233334 4444444444332 34555789999999
Q ss_pred HHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
++-..|++.+|.+.+..... | -..+.+.|...|...|.+++|..+|....+ +-|. ...++.|...+-+.|++++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHH
Confidence 99999999999999998765 3 345788899999999999999999999988 6677 5788999999999999999
Q ss_pred HHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 454 GQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
|...+++.. .++|+ ...|+.+...|-..|+.+.|.+.+.+. +..+|.-+.++..|..+|-.
T Consensus 407 Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA---------------I~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 407 AIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA---------------IQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH---------------HhcCcHHHHHHhhHHHHhhc
Confidence 999999988 57887 678999999999999999999998876 46667777889999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 037537 533 SGKWEEVATIRRLMRD 548 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~ 548 (677)
+|+..+|+.-++...+
T Consensus 469 sGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALK 484 (966)
T ss_pred cCCcHHHHHHHHHHHc
Confidence 9999999999988765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-14 Score=162.64 Aligned_cols=392 Identities=12% Similarity=0.053 Sum_probs=286.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 037537 101 TLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180 (677)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 180 (677)
-.+......|+.++|++++.+..... +.+...+..+...+.+.|++
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~----------------------------------~~~a~~~~~lA~~~~~~g~~ 65 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM----------------------------------QLPARGYAAVAVAYRNLKQW 65 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 34556668899999999888876421 22333456777888999999
Q ss_pred hHHHHHHhhc-C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 181 DEAKRVFYEM-G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 181 ~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
++|.++|++. . .+.+...+..+...+...|++++|+..+++..+. .|+...+..+..++...|+.+.|...+..++
T Consensus 66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999996 2 2334556778888899999999999999999875 3433227777778889999999999999999
Q ss_pred HhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-CCh------hhHHHHHhhh-----cccCCCH---HHHHHHHH
Q 037537 259 KSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-PDL------VLWNTMISGY-----SQKEEYS---DQALGCFK 323 (677)
Q Consensus 259 ~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-~~~------~~~~~li~~~-----~~~~~~~---~~A~~l~~ 323 (677)
+.. +.+..+...+...+.+.+. .+.|.+.++.... |+. .....++... ... +++ ++|++.++
T Consensus 144 ~~~-P~~~~~~~~la~~l~~~~~-~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~-~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRA-PQTQQYPTEYVQALRNNRL-SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK-ERYAIADRALAQYD 220 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCC-hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh-HHHHHHHHHHHHHH
Confidence 875 4455666677888888777 8999999988775 221 0111222222 122 233 77888888
Q ss_pred HHhhc-CCCCCcc-hHHH----HHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCC
Q 037537 324 KLNRV-GYHPDDC-SFVC----VISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMP 396 (677)
Q Consensus 324 ~m~~~-g~~p~~~-t~~~----ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 396 (677)
.+... ...|+.. .+.. .+.+....+ .+.+...+..+.+.+.+.. ......+...|...|++++|...|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P-~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP-PWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 88854 2334332 1111 133444556 8888888888887653211 2233336789999999999999999875
Q ss_pred CCC-------cchHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHH
Q 037537 397 EHN-------TVSLNSMIAGYAQHGIGMEALRLFEWMLETN-----------IPPTN---ITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 397 ~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~ 455 (677)
+.+ ...+..+..++...|++++|+++++.+.... -.|+. ..+..+...+...|+.++|.
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 422 1245567778899999999999999998752 11332 24456667788999999999
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
.+++.+... .+.+...+..+..++.+.|++++|++.+++. ++++|++...+..++..+...|+
T Consensus 380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a---------------l~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKA---------------EVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------HhhCCCChHHHHHHHHHHHHhCC
Confidence 999999864 3335778889999999999999999999876 57889999999999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 037537 536 WEEVATIRRLMRDR 549 (677)
Q Consensus 536 ~~~a~~~~~~m~~~ 549 (677)
|++|..+++.+.+.
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998874
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-14 Score=155.26 Aligned_cols=412 Identities=10% Similarity=0.070 Sum_probs=280.9
Q ss_pred HHHccCChHHHHHHHhhccc--cChh-HHHHHHHHHHhcCChhHHHHHhccCCCCCcchHH-HH--HHHHHhCCChhHHH
Q 037537 43 LYSKCGCLSAAHHAFNQTQH--ANVF-SFNVLLAAYARQLRIASARQLFDQIPQPDLVSYN-TL--ISAYADCGDTESAL 116 (677)
Q Consensus 43 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~l--i~~~~~~g~~~~A~ 116 (677)
...+.|+++.|...|++..+ |+.. ....++..+...|+.++|+..+++...|+...+. .+ ...|...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34599999999999999998 4431 2338888999999999999999998877555444 33 45778889999999
Q ss_pred HHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC
Q 037537 117 SLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD 195 (677)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~ 195 (677)
++|+++.+. .|+ ++.++..++..|...++.++|.+.++++ ...|+
T Consensus 123 ely~kaL~~--dP~--------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 123 ALWQSSLKK--DPT--------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHhh--CCC--------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 999999875 343 3344456778888999999999999998 33455
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 037537 196 EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLID 274 (677)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 274 (677)
...+-.++..+...++..+|++.++++.+.. | +...+..+..+..+.|-...|.++...- |+.++-.....
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~ 240 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ 240 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH
Confidence 4444333333333566666999999998853 5 4566677788888888888877665542 22111111000
Q ss_pred -------HHHHcC---------C--CHHHHHHHHhhCCC-----CCh-hhH----HHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 275 -------LYAKCS---------G--DMRDCMKVFEEIPQ-----PDL-VLW----NTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 275 -------~y~~~g---------~--~~~~A~~~f~~~~~-----~~~-~~~----~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
-..+.+ + -.+.|..-++.+.. |.. ..| --.+-++... ++..++++.|+.|.
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r-~r~~~vi~~y~~l~ 319 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR-HQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhh
Confidence 000000 0 02222222222211 111 111 1122334444 55566666666665
Q ss_pred hcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC--------
Q 037537 327 RVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH-------- 398 (677)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------- 398 (677)
..|.+ .. ..+--++.++|...+++++|..+|..+...
T Consensus 320 ~~~~~----------------------------------~P-~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~ 364 (822)
T PRK14574 320 AEGYK----------------------------------MP-DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS 364 (822)
T ss_pred hcCCC----------------------------------CC-HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC
Confidence 55432 22 456678889999999999999999887432
Q ss_pred -CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 399 -NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-----------PPT--N-ITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 399 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~--~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
+......|.-+|...+++++|..+++++.+..- .|| - ..+..+...+...|++.+|++.++.+..
T Consensus 365 ~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~ 444 (822)
T PRK14574 365 DDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS 444 (822)
T ss_pred cchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122246788899999999999999999987311 122 2 2344556667889999999999999976
Q ss_pred hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 464 MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
. -+-|......+.+++...|.+.+|++.++.. ..++|++..+...++.++...|+|.+|..+.
T Consensus 445 ~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a---------------~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 445 T--APANQNLRIALASIYLARDLPRKAEQELKAV---------------ESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred h--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------hhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4 3337888899999999999999999999766 3567888888999999999999999998888
Q ss_pred HHHHhC
Q 037537 544 RLMRDR 549 (677)
Q Consensus 544 ~~m~~~ 549 (677)
+...+.
T Consensus 508 ~~l~~~ 513 (822)
T PRK14574 508 DDVISR 513 (822)
T ss_pred HHHHhh
Confidence 776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-14 Score=136.19 Aligned_cols=434 Identities=15% Similarity=0.151 Sum_probs=279.7
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--ccCChHHH-HHHHhhccc---cChhHHHHHHHHHHhcCChh
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYS--KCGCLSAA-HHAFNQTQH---ANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~~a-~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 82 (677)
...+|.++.+.-+++.|.+.|++.++.+-..|++.-+ ...+..-| .+-|-.|.+ .+..+| |.|++.
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVA 196 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHH
Confidence 4567889999999999999999999988888776533 33333322 244555554 333344 456554
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCC
Q 037537 83 SARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDH 162 (677)
Q Consensus 83 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~ 162 (677)
+ -+|+..+ ....+|..||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+.+-. .++.+...|+...+.|
T Consensus 197 d--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 D--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--VGKKLVAEMISQKMTP 271 (625)
T ss_pred H--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--ccHHHHHHHHHhhcCC
Confidence 4 4555544 466899999999999999999999999999998999999999999875543 4588899999999999
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHh----hc---CCCCCeeeHHHHHHHHHhCCCchH-HHHHHHHHHH----CCCCC-
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFY----EM---GEIKDEVSWNSMVVAYGQHREGLE-ALQLFQEMVS----LQLGL- 229 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~----~m---~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p- 229 (677)
|..++|+++...++.|+++.|++.+- +| |..|...+|..+|..+.+.+++.+ |..++.+... +.++|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999999887766554 34 889999999999999999888754 4444444432 23333
Q ss_pred ---CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHh
Q 037537 230 ---DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMIS 306 (677)
Q Consensus 230 ---d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~ 306 (677)
|..-|...+..|.+..+.+.|.++++.+.... +++..=.-+ ....-|..+..
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~--------------------N~~~ig~~~-----~~~fYyr~~~~ 406 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD--------------------NWKFIGPDQ-----HRNFYYRKFFD 406 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--------------------chhhcChHH-----HHHHHHHHHHH
Confidence 45668889999999999999999887664321 011000000 01122333444
Q ss_pred hhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCH
Q 037537 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNL 385 (677)
Q Consensus 307 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 385 (677)
..|+. ...+..+..|..|.-.-+-|+..+...+++|....+ ++....++..++..|.... ..+.
T Consensus 407 licq~-es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~------------- 471 (625)
T KOG4422|consen 407 LICQM-ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLR------------- 471 (625)
T ss_pred HHHHH-HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHH-------------
Confidence 55555 556677777777777667777777777777777777 7777777777776664433 1111
Q ss_pred HHHHHHHhcCC-CCCcchHHHHHHHHHHc-CChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037537 386 EDARRLFDRMP-EHNTVSLNSMIAGYAQH-GIGME-ALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMK 462 (677)
Q Consensus 386 ~~A~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 462 (677)
++.+.++.+-. .|+...-..+-...++. -++.+ ....-.+|.+...+| ...+.++..+.+.|..++|.++|..+.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 11222222211 22212111111111111 01111 122234455443333 345555556678888888888888775
Q ss_pred HhcCCccChHHHH---HHHHHHhhcCChHHHHHHHHhC
Q 037537 463 DMFGFEPEGEHYS---CMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 463 ~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m 497 (677)
+..+--|-....+ -+++.-.+......|...++-|
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5534344444444 3444555666777777777666
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=160.40 Aligned_cols=316 Identities=10% Similarity=0.022 Sum_probs=154.0
Q ss_pred HHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhH
Q 037537 72 LAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLI 148 (677)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 148 (677)
+..+.+.|++++|..+++.... | +...+..++......|++++|...|+++.+. .|+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~----------------- 109 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQ----------------- 109 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCC-----------------
Confidence 3444455666666655555432 2 2333334444455566666666666665543 2221
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 037537 149 KQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ 226 (677)
Q Consensus 149 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 226 (677)
...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++.+....
T Consensus 110 ---------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 110 ---------------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred ---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 222334444555556666666555555 2222 23345555555555666666666555554432
Q ss_pred CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHH
Q 037537 227 LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNT 303 (677)
Q Consensus 227 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~ 303 (677)
..+. ..+.. +..+...|++++|...+..+++..-.++......+...+.+.|+ .++|...|++..+ .+...+..
T Consensus 175 P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~-~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 PPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK-YQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCHHHHHH
Confidence 2111 11111 22244555555555555555444322222333333445555555 5555555555432 23344445
Q ss_pred HHhhhcccCCCHHH----HHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHH
Q 037537 304 MISGYSQKEEYSDQ----ALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMY 379 (677)
Q Consensus 304 li~~~~~~~~~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y 379 (677)
+...|.+. |++++ |+..|++.... .|+. ..++..+...|
T Consensus 252 Lg~~l~~~-G~~~eA~~~A~~~~~~Al~l--~P~~----------------------------------~~a~~~lg~~l 294 (656)
T PRK15174 252 LGLAYYQS-GRSREAKLQAAEHWRHALQF--NSDN----------------------------------VRIVTLYADAL 294 (656)
T ss_pred HHHHHHHc-CCchhhHHHHHHHHHHHHhh--CCCC----------------------------------HHHHHHHHHHH
Confidence 55555555 55543 45555555442 3332 34445555556
Q ss_pred HccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 037537 380 SKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI-TFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 455 (677)
.+.|++++|...+++..+ | +...+..+...|.+.|++++|+..|+++.+. .|+.. .+..+..++...|+.++|.
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666555443 2 2334555555566666666666666666553 33332 2222344455566666666
Q ss_pred HHHHHhHH
Q 037537 456 KYFSMMKD 463 (677)
Q Consensus 456 ~~~~~m~~ 463 (677)
..|+...+
T Consensus 373 ~~l~~al~ 380 (656)
T PRK15174 373 SVFEHYIQ 380 (656)
T ss_pred HHHHHHHH
Confidence 66665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-14 Score=156.60 Aligned_cols=316 Identities=11% Similarity=0.036 Sum_probs=202.0
Q ss_pred HHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCC
Q 037537 169 SLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLE 245 (677)
Q Consensus 169 ~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 245 (677)
-++....+.|++++|..+++.. ...| +...+..++.+....|++++|++.|+++... .|+ ...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 3445666778888888887776 2222 3445566666777788888888888888773 343 455666667778888
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCC-hhhHHHHHhhhcccCCCHHHHHHHH
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPD-LVLWNTMISGYSQKEEYSDQALGCF 322 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~~~~~~~A~~l~ 322 (677)
+++.|...+..+++.. +.+...+..+...|...|+ .++|...++.+. .|+ ...+..+ ..+.+. |++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~-g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPPRGDMIATC-LSFLNK-SRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHc-CCHHHHHHHH
Confidence 8888888888887763 4456677777888888888 888888877653 232 2233333 335666 8888888888
Q ss_pred HHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHH----HHHHHhcCCC
Q 037537 323 KKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLED----ARRLFDRMPE 397 (677)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~~~~~~~ 397 (677)
+.+......++......+..++...+ .+.+...+....... |+...++..+...|.+.|++++ |...|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 88766533333333333344555666 666666666666532 3335666667777777777664 5666666543
Q ss_pred --C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH-
Q 037537 398 --H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE- 472 (677)
Q Consensus 398 --~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~- 472 (677)
| +...+..+...+...|++++|+..+++..+. .|+ ...+..+..++...|++++|...++.+.+. .|+..
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~ 353 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSK 353 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchH
Confidence 2 3446666677777777777777777777663 333 445555666666777777777777766643 34432
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+..+..+|...|+.++|.+.+++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2333455666777777777776655
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-14 Score=155.91 Aligned_cols=406 Identities=13% Similarity=0.017 Sum_probs=250.4
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhH
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 83 (677)
..+...|+++.|...++..++.. |++..|..+..+|.+.|++++|...+....+ .+..++..+..+|...|++++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45677899999999999999764 6788899999999999999999999999888 345688889999999999999
Q ss_pred HHHHhccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCC
Q 037537 84 ARQLFDQIPQPD---LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGF 160 (677)
Q Consensus 84 A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~ 160 (677)
|..-|......+ ......++.-+.. ..+........+. .|........+..
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~-------------------- 266 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGN-------------------- 266 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHH--------------------
Confidence 998876543211 1111111111111 2222222222222 2221111111111
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-eeeHHHHHHHH---HhCCCchHHHHHHHHHHHCC-CCCC-HhH
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-EVSWNSMVVAY---GQHREGLEALQLFQEMVSLQ-LGLD-MYT 233 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~pd-~~t 233 (677)
|........+..-++.- ...++ ...+..+...+ ...+++++|++.|++..+.+ ..|+ ...
T Consensus 267 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 267 -------------YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA 333 (615)
T ss_pred -------------HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence 10000011111101111 00010 01111111111 12356667777777666543 2232 344
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcc
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQ 310 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 310 (677)
+..+...+...|+++.|...+...++.. +.+...+..+...|...|+ +++|...|++..+ .+...|..+...+..
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGD-PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5555555566677777777777666552 2234456666666777677 7777777776542 345667777777777
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHH
Q 037537 311 KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARR 390 (677)
Q Consensus 311 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 390 (677)
. |++++|+..|++..+. .|+. ...+..+...|.+.|++++|..
T Consensus 412 ~-g~~~~A~~~~~kal~l--~P~~----------------------------------~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 412 K-GEFAQAGKDYQKSIDL--DPDF----------------------------------IFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred c-CCHHHHHHHHHHHHHc--CccC----------------------------------HHHHHHHHHHHHHCCCHHHHHH
Confidence 7 8888888888887753 3442 3445566777788888888888
Q ss_pred HHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HH-------HHHHHHHHhccCCHHHHHHHHH
Q 037537 391 LFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-IT-------FVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 391 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t-------~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
.|++..+ .+...|+.+...+...|++++|++.|++.++.. |+. .+ ++..+..+...|++++|.++++
T Consensus 455 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 455 TFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8887654 345678888888888899999999998888743 321 11 1112222334688999999998
Q ss_pred HhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 460 MMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 460 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+. .|+ ...+..+..+|.+.|++++|.++|++.
T Consensus 533 kAl~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 533 KALII---DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHhc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 87753 454 446788889999999999999998876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-14 Score=158.03 Aligned_cols=400 Identities=11% Similarity=-0.019 Sum_probs=265.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 82 (677)
+......|+.++|++++....... +.+...+..+..++.+.|++++|.+++++... .+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 455667788888888888887633 55556677888888888888888888888665 34556667777788888888
Q ss_pred HHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhC
Q 037537 83 SARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCG 159 (677)
Q Consensus 83 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g 159 (677)
+|...+++..+ | +.. |..+...+...|+.++|+..+++..+. .|+
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~----------------------------- 148 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ----------------------------- 148 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------------
Confidence 88888877654 3 344 777777888888888888888888764 343
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCe------eeHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC
Q 037537 160 FDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDE------VSWNSMVVAYG-----QHREG---LEALQLFQEMVSL 225 (677)
Q Consensus 160 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~ 225 (677)
+..++..+...+.+.|..+.|.+.++.....|+. .....++.... ..+++ ++|++.++.+.+.
T Consensus 149 ---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred ---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 2333345566677778888888888877222221 01122222221 12233 6788888888754
Q ss_pred -CCCCCHh-HHH----HHHHHHccCCChHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C
Q 037537 226 -QLGLDMY-TLA----SILTAFTSLEDLVGGLQFHAHLIKSGFH-QNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P 296 (677)
Q Consensus 226 -g~~pd~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~ 296 (677)
...|+.. .+. ..+.++...++.++|+..++.+.+.+-+ |+. ....+...|...|+ .++|...|+++.+ |
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~-~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQ-PEKAQSILTELFYHPE 303 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCC-cHHHHHHHHHHhhcCC
Confidence 2233321 111 1133455668889999999888877532 221 22235667888888 9999999888753 2
Q ss_pred C-----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCc--c
Q 037537 297 D-----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNR--I 369 (677)
Q Consensus 297 ~-----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~--~ 369 (677)
. ...+..+..++.+. |++++|..+++.+... .|.......+. .-.|+. .
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~-g~~~eA~~~l~~~~~~--~P~~~~~~~~~---------------------~~~p~~~~~ 359 (765)
T PRK10049 304 TIADLSDEELADLFYSLLES-ENYPGALTVTAHTINN--SPPFLRLYGSP---------------------TSIPNDDWL 359 (765)
T ss_pred CCCCCChHHHHHHHHHHHhc-ccHHHHHHHHHHHhhc--CCceEeecCCC---------------------CCCCCchHH
Confidence 1 12355566677778 8899999999888764 23221110000 001110 2
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSAC 445 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 445 (677)
.....+...+...|++++|.++++++.. .+...+..+...+...|++++|++.+++.++. .|| ...+.......
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH
Confidence 2445667788888999999999988754 35667888888888999999999999988884 466 45666666677
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGE 472 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~ 472 (677)
...|++++|..+++.+.+. .|+..
T Consensus 438 l~~~~~~~A~~~~~~ll~~---~Pd~~ 461 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAR---EPQDP 461 (765)
T ss_pred HHhCCHHHHHHHHHHHHHh---CCCCH
Confidence 8888999999999998875 45543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-13 Score=141.00 Aligned_cols=502 Identities=13% Similarity=0.066 Sum_probs=282.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccC------hhHHHHHHHHHHhcCChhHHHHH
Q 037537 14 DLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHAN------VFSFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 87 (677)
....++.++....... +.++.+.+.|.+.|-..|++..+..+...+...+ ...|-.+..+|...|+++.|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3444555555555554 5566666666676666777777776666665511 22355566677777777777776
Q ss_pred hccCCC--CCc--chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcch-h------hHHHHHHHHH
Q 037537 88 FDQIPQ--PDL--VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNL-C------LIKQLHCLAI 156 (677)
Q Consensus 88 f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~------~~~~i~~~~~ 156 (677)
|-+..+ +|- ..+--|.+.|.+.|+++.+...|+...+. .||..--..+|....... . .+..+.....
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 665544 222 23335566677777777777777776653 354443333333222111 1 2222222222
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCh------hHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHC---CC
Q 037537 157 YCGFDHYASVNNSLLTCYSRNGFL------DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSL---QL 227 (677)
Q Consensus 157 ~~g~~~~~~~~~~li~~~~~~g~~------~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 227 (677)
+.- +.|...|-.+-.+|-...-+ ..|..++..-+..+-....|.+...+...|.+++|...|...... -.
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 221 33444454444444433222 222222222222344555666666677777777777777666543 12
Q ss_pred CCCHh------HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CCh
Q 037537 228 GLDMY------TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDL 298 (677)
Q Consensus 228 ~pd~~------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~ 298 (677)
.+|.. +--.+.+..-..++.+.|.+.|..+++.. +.-+..|-.|..+--..+. ..+|...+....+ .|.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~-~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNN-LYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccC-cHHHHHHHHHHHhcccCCc
Confidence 22221 11223333344556666667776666552 1111222222222222233 5566666655542 344
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcC-CCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVG-YHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
..|+.+-.-+... ..+..|.+-|......- ..+|..+..++=+.|.. ..+.+.. +.
T Consensus 565 ~arsl~G~~~l~k-~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~--------------~l~~~~r-----n~--- 621 (1018)
T KOG2002|consen 565 NARSLLGNLHLKK-SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ--------------ALHNPSR-----NP--- 621 (1018)
T ss_pred HHHHHHHHHHHhh-hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH--------------Hhccccc-----Ch---
Confidence 4555554455544 44455555444443321 11232222111111100 0000000 00
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 454 (677)
-...+..++|.++|.++.+ +|...-|.+...++..|++.+|..+|.+..+.. .-+..+|..+...|...|.+..|
T Consensus 622 -ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 -EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 1123567888999887765 466677888888999999999999999999875 34556888899999999999999
Q ss_pred HHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC-CCCCChHH---------HHHHHHHhccCCCCchhHH
Q 037537 455 QKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM-PFNPGSIA---------LKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~---------~~~~~~l~~l~p~~~~~~~ 524 (677)
.++|+...+.+.-.-+..+..+|..++-++|.+.+|.+.+... ...|.... .+.++.+++.++. +..
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~---t~e 776 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR---TLE 776 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc---cHH
Confidence 9999999988776678889999999999999999999887654 22333222 5555666666663 222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 525 MLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
..-...+..++|.++|..|...+-+
T Consensus 777 ---ev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 777 ---EVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2233456689999999999887644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-12 Score=124.27 Aligned_cols=422 Identities=14% Similarity=0.141 Sum_probs=290.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-----hHHHHHHHHHHhCCCCChhHHHHH
Q 037537 96 LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-----LIKQLHCLAIYCGFDHYASVNNSL 170 (677)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~i~~~~~~~g~~~~~~~~~~l 170 (677)
+.+=|.|++ ....|.+.++.-+|++|++.|+......-..++.-.+-... .-.+-|-.+.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 456677765 45678999999999999999987776665555554332222 11222222333332 122222
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHH
Q 037537 171 LTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 171 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 250 (677)
|.|++.+ ++-+. ..++..++..||.|+++--..+.|.++|++-.....+.+..+|+.+|.+-+ +..+
T Consensus 191 -----K~G~vAd---L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred -----ccccHHH---HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhcc
Confidence 3455444 44444 456778999999999999999999999999999889999999999998764 3345
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHh----hCC----CCChhhHHHHHhhhcccCCCH-HHHHHH
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFE----EIP----QPDLVLWNTMISGYSQKEEYS-DQALGC 321 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~~~~~-~~A~~l 321 (677)
+++..+|+...+.||..++|+++...++.|+ ++.|++.+- +|+ +|...+|..+|..+++. +++ .-|..+
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~-F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re-~dp~k~as~~ 335 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGK-FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE-SDPQKVASSW 335 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc-CCchhhhHHH
Confidence 8899999999999999999999999999998 887766554 443 69999999999999998 555 345566
Q ss_pred HHHHhh----cCCCC----CcchHHHHHHHhhccC-hhHHHHHHHHHHHh------hcccCccchhHHHHHHHHccCCHH
Q 037537 322 FKKLNR----VGYHP----DDCSFVCVISACSNLS-PSLGKQIHALTIKI------EIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 322 ~~~m~~----~g~~p----~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~------~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
+.+++. .-++| |...|.+.++.|.+.. .+.+.+++...... |-......-|..+.+..+....++
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554 23444 3456788999999999 99999999876542 111111345677888889999999
Q ss_pred HHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-C-----------
Q 037537 387 DARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-K----------- 450 (677)
Q Consensus 387 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~----------- 450 (677)
.-...|+.|.. |+..+..-++++....|.++-.-.++..|+..|..-+...-..++.-+++.. .
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 99999998864 6777777788888888888888888888887774444333333333333222 0
Q ss_pred --------HHH-HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc-
Q 037537 451 --------VAE-GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA- 520 (677)
Q Consensus 451 --------~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~- 520 (677)
+.+ ....-.+++ ...-.....++..-++.|.|+.++|.+++.-...+.+.+ |..+
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i------------p~~p~ 560 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI------------PRSPL 560 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC------------CCCcc
Confidence 001 111111222 223345567888889999999999999998663332221 1111
Q ss_pred -hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 521 -VPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 521 -~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
-+..-|.+.-........|+.+++.|...+..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 12335556666778888999999999776653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-11 Score=136.94 Aligned_cols=423 Identities=13% Similarity=0.053 Sum_probs=295.1
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHhhccccChhH-HHHH--HHHHHhcCChhH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFS-AYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFS-FNVL--LAAYARQLRIAS 83 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~ 83 (677)
...+.|++..|+..+.++++.. |.+ +.++ .++..+...|+.++|...+++...|+... +..+ ...|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3468899999999999999886 333 2344 88899999999999999999998754333 3333 557888899999
Q ss_pred HHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHh
Q 037537 84 ARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYC 158 (677)
Q Consensus 84 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~ 158 (677)
|.++|+++.+ | |...+..++..|...++.++|++.++++... .|+...+..+......... .+.+.+..+++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999876 3 4566778888999999999999999999865 5666666333333322222 566666666666
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHH-------HHHHH---------hCCCc---hHHHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSM-------VVAYG---------QHREG---LEALQLF 219 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~l-------i~~~~---------~~g~~---~~A~~~~ 219 (677)
. +.+...+..++....+.|-...|.++..+- |+.++=... +.-.+ ...++ +.|+.-+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4 556778888889999999999998888765 444431110 11111 11222 3455555
Q ss_pred HHHHHC-CCCCCHh-----HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 220 QEMVSL-QLGLDMY-----TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 220 ~~m~~~-g~~pd~~-----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
+.+... +-.|... ...--+-++...++..++.+.++.+...+.+....+--++.++|...+. .++|..+|+++
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~-P~kA~~l~~~~ 353 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL-PEKAAPILSSL 353 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHH
Confidence 555442 2223221 2234455778888999999999999988877677788899999999888 99999999987
Q ss_pred CCC---------ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcch-HHHHHHHhhccChhHHHHHHHHHHHhh
Q 037537 294 PQP---------DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCS-FVCVISACSNLSPSLGKQIHALTIKIE 363 (677)
Q Consensus 294 ~~~---------~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~i~~~~~~~~ 363 (677)
... +......|.-+|... +++++|..+++.+.+. .|..+. |. .-. ..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~-e~~~~A~~~l~~~~~~--~p~~~~~~~----~~~----------------~~ 410 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNES-EQLDKAYQFAVNYSEQ--TPYQVGVYG----LPG----------------KE 410 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhc-ccHHHHHHHHHHHHhc--CCcEEeccC----CCC----------------CC
Confidence 431 222346778888888 9999999999999863 331110 00 000 00
Q ss_pred cccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 037537 364 IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFV 439 (677)
Q Consensus 364 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 439 (677)
..++-......++..+...|++.+|++.++.+.. -|...+..+...+...|.+.+|.+.++..... .|+ ..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHH
Confidence 0111133445566777788888888888888764 36667888888888888888888888766653 454 55666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
....+....|++++|..+.+.+.+.
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 7777777888888888888888765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-11 Score=129.57 Aligned_cols=454 Identities=13% Similarity=0.092 Sum_probs=231.8
Q ss_pred hHHHHHHHhhccc--cChhHHHHHHHHH--HhcCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCChhHHHHHH
Q 037537 50 LSAAHHAFNQTQH--ANVFSFNVLLAAY--ARQLRIASARQLFDQIPQ------PDLVSYNTLISAYADCGDTESALSLF 119 (677)
Q Consensus 50 ~~~a~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 119 (677)
++.|.+.|..+.+ |+- +...|..+. -..+++..|+.+|..... +|+. -.+-..+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5777777777766 221 112222222 234677777777776332 2321 12224555777888888888
Q ss_pred HHhHhcCCCCCcccHHHHHHHhhcch---h---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCC
Q 037537 120 KDMREKRFDTDGFTLSGLITASSNNL---C---LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEI 193 (677)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~a~~~~~---~---~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 193 (677)
.+.++. .|+.+.-...|.-....- + .+.+......+.. ..|+.+.+.|-+.|.-.|++..+..+...+ ..
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~a-i~ 298 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHA-IK 298 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHH-HH
Confidence 777653 342211111111110000 0 2222222222111 345556666666666666666666666655 21
Q ss_pred CC------eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH--HHHHHHHHccCCChHHHHHHHHHHHHhCCCCc
Q 037537 194 KD------EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYT--LASILTAFTSLEDLVGGLQFHAHLIKSGFHQN 265 (677)
Q Consensus 194 ~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 265 (677)
.+ ..+|-.+.++|-..|++++|...|.+-.+. .||.++ +..+...+...|+++.+...|+.+.+.. +.+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 11 223555666666666666666666555442 333333 3344555666666666666666666553 334
Q ss_pred hhhHHHHHHHHHHcC----CCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHH
Q 037537 266 SHIGSGLIDLYAKCS----GDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFV 338 (677)
Q Consensus 266 ~~~~~~li~~y~~~g----~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~ 338 (677)
..+...|...|+..+ . .+.|..+..+..+ .|...|-.+-..+-+. ++..++..|....
T Consensus 376 ~etm~iLG~Lya~~~~~~~~-~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~--d~~~sL~~~~~A~------------ 440 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEK-RDKASNVLGKVLEQTPVDSEAWLELAQLLEQT--DPWASLDAYGNAL------------ 440 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHHhc--ChHHHHHHHHHHH------------
Confidence 444445555555432 2 3455555554443 2334444444444432 3333344444332
Q ss_pred HHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-------CCcc------hHHH
Q 037537 339 CVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-------HNTV------SLNS 405 (677)
Q Consensus 339 ~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~~------~~~~ 405 (677)
..+...+.... +.+.|.+...+...|++++|...|..... +|.. +--.
T Consensus 441 ------------------d~L~~~~~~ip-~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 441 ------------------DILESKGKQIP-PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred ------------------HHHHHcCCCCC-HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 11222233333 55666666666666666666666654432 1221 1111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
+...+-..++++.|.+.|....+. .|+- ..|..++......+...+|...+...... ...++..++-+.+.+.+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhh
Confidence 333444455666666666666653 3442 33444432223344555555555555542 233344444444455555
Q ss_pred CChHHHHHHHHhC----CCCCChHH-----------------------------HHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 485 GKLTDAERLIEAM----PFNPGSIA-----------------------------LKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 485 g~~~~A~~~~~~m----~~~~~~~~-----------------------------~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
..+.-|.+-|+.+ ...+|... .....++++.+|.|..+-+-++-+++
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhh
Confidence 5555454422222 11222211 33445678899999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 037537 532 ASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~~g~ 551 (677)
..|+|.+|..+|.+.++...
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh
Confidence 99999999999999998775
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-09 Score=109.56 Aligned_cols=445 Identities=11% Similarity=0.074 Sum_probs=262.5
Q ss_pred HHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH----hHhcCCCCCcccHHHHHHHhhcchh
Q 037537 74 AYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKD----MREKRFDTDGFTLSGLITASSNNLC 146 (677)
Q Consensus 74 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~ 146 (677)
+|++...++.|.++++...+ .+...|.+-...--++|+.+...++..+ +...|+..+...|..=-.+|-..+.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 44555556666666665554 3555666555555566666666665543 3445666666555555555555554
Q ss_pred --hHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHHhhc-CC-CCCeeeHHHHHHHHHhCCCchHHHHHHH
Q 037537 147 --LIKQLHCLAIYCGFDHY--ASVNNSLLTCYSRNGFLDEAKRVFYEM-GE-IKDEVSWNSMVVAYGQHREGLEALQLFQ 220 (677)
Q Consensus 147 --~~~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~m-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 220 (677)
..+.|...++.-|++.. ..+|+.--..+.+.+.++-|+.+|... .. ..+...|.-....=-..|..++-..+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555555555555332 235555556666666666666666554 11 2234456555555555666666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCCh
Q 037537 221 EMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDL 298 (677)
Q Consensus 221 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~ 298 (677)
+....- +-...-|.....-.-..|+...|+.++.++.+.. +.+..+|-+-+..-+.... ++.|+.+|.+.. .++.
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e-~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDE-LERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcccc-HHHHHHHHHHHhccCCcc
Confidence 665531 1123333333444455566666666666666654 3355566666666666555 666666666554 2444
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
..|.--+..---. +..++|++++++.++. -|+- ...|-.+...
T Consensus 652 Rv~mKs~~~er~l-d~~eeA~rllEe~lk~--fp~f----------------------------------~Kl~lmlGQi 694 (913)
T KOG0495|consen 652 RVWMKSANLERYL-DNVEEALRLLEEALKS--FPDF----------------------------------HKLWLMLGQI 694 (913)
T ss_pred hhhHHHhHHHHHh-hhHHHHHHHHHHHHHh--CCch----------------------------------HHHHHHHhHH
Confidence 4443333322223 5566666666655542 3332 3445555566
Q ss_pred HHccCCHHHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE--HN-TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
+-..++++.|++.|..-.+ |+ +..|-.+...--+.|..-.|..++++.+-.+ +-|...|...|..-.+.|+.++|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655444 32 3346666665566666666666666666554 445566666666666666666666
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHH---------------HHHHHHHhccCCCCc
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA---------------LKAANHFLQLEPSNA 520 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l~~l~p~~~ 520 (677)
.+.....+. .+.+-..|..-|.+..+.++-..+...+++....|.... ..=+.+++..+|++.
T Consensus 774 ~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 774 LLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 666666553 333455566666666666666666666666654454443 222345568899999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEEC
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVK 563 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 563 (677)
.+|.-+...+..+|.-++-.+++++.... .|.-|..|..+.
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999999887664 366688887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-11 Score=128.45 Aligned_cols=509 Identities=13% Similarity=0.069 Sum_probs=295.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 037537 20 SLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPD 95 (677)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 95 (677)
.++..+...|+.|+..+|.++|.-|+..|+.+.|. +|..|.- -+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56788889999999999999999999999999999 8888776 44567899999988888887665 688
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-hH-------hcCCCCCcccHHHHHHHhhcchh---------hHHHHHHHHHHh
Q 037537 96 LVSYNTLISAYADCGDTESALSLFKD-MR-------EKRFDTDGFTLSGLITASSNNLC---------LIKQLHCLAIYC 158 (677)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~~---------~~~~i~~~~~~~ 158 (677)
..+|+.|..+|.+.|+... ++.-++ |. ..|+-....-|...+.+|..... ..+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765 332222 22 23443344445455555554432 234455556665
Q ss_pred CCCCChhHHHHHHHHHHhcC-----ChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH
Q 037537 159 GFDHYASVNNSLLTCYSRNG-----FLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYT 233 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g-----~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 233 (677)
+....+..|+.=...+.+.. .+++-..........++..++.+++..-..+|+.+.|..++.+|.+.|++.+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 52222222221111122221 2233333333332358999999999999999999999999999999999999998
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCC
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~ 313 (677)
|..++-+ .++......+..-|...|+.|+..++.--+-...+.|. ...+....+.-.--....+..+..+...+ .
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~-t~~~~e~sq~~hg~tAavrsaa~rg~~a~-k 316 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ-TKYGEEGSQLAHGFTAAVRSAACRGLLAN-K 316 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh-hhhcccccchhhhhhHHHHHHHhcccHhH-H
Confidence 8888866 78888899999999999999999999877766666433 22221111100000111122222221111 1
Q ss_pred CHH-----HHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHh--hcccCccchhHHHHHHHHc----
Q 037537 314 YSD-----QALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKI--EIRSNRISVNNALVAMYSK---- 381 (677)
Q Consensus 314 ~~~-----~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~--~~~~~~~~~~~~li~~y~k---- 381 (677)
+.+ -....+.+..-.|+......|...... ...| -+...++-..+..- ...++.+..+..++.-|.+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111 111111111112222111111111111 0111 22222222211110 0111111111111111111
Q ss_pred ------------------cCCHHHHHHHH------------hcCC----CCCcchH-----------HHHHHHHHHcCCh
Q 037537 382 ------------------CGNLEDARRLF------------DRMP----EHNTVSL-----------NSMIAGYAQHGIG 416 (677)
Q Consensus 382 ------------------~g~~~~A~~~~------------~~~~----~~~~~~~-----------~~li~~~~~~g~~ 416 (677)
.....+..+.. .... ++....| +.++..+...-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 1110 0111222 3334444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCccChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM-FGFEPEGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
.+++..-+.....-+ | ..|..+|+-|.+...++.|..+.++.... -.+..|..-+..+.+.+.|-+...+|..+++
T Consensus 476 lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 444433322222111 1 46788888888888999998888877532 0233456678889999999999999999999
Q ss_pred hCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 037537 496 AMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSW 559 (677)
Q Consensus 496 ~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 559 (677)
++.. ..+..|.-..+..-+.+.-+..|+.+...++++-....|+.. .|.-|
T Consensus 553 e~ks------------~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 553 EDKS------------SAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhhH------------HhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8853 124445556677888899999999999999999999999876 35545
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-09 Score=108.65 Aligned_cols=483 Identities=16% Similarity=0.129 Sum_probs=310.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHH
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 87 (677)
.+|+.++|..++.++++.. +.....|-+|...|-..|+.+++...+-.+.. .|...|-.+-....+.|.++.|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999987 77889999999999999999999987654443 6778899999999999999999999
Q ss_pred hccCCCCCcchHHH---HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHH----Hhhcchh---hHHHHHHHHHH
Q 037537 88 FDQIPQPDLVSYNT---LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLIT----ASSNNLC---LIKQLHCLAIY 157 (677)
Q Consensus 88 f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~~~~~---~~~~i~~~~~~ 157 (677)
|.+..+.++.-|-. =+..|-+.|+...|.+-|.++.+.....|-.-+..++. .+....+ .++.+.+...+
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99988744444443 35678899999999999999987643222222333333 3333333 44445555554
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C------------------------CCCCeeeHH----HHHHHHHh
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G------------------------EIKDEVSWN----SMVVAYGQ 208 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~------------------------~~~~~~~~~----~li~~~~~ 208 (677)
.+-..+...++.++.+|.+...++.|......+ + ..++..+|+ -+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 455566677888899999998888888777665 1 112222222 12334444
Q ss_pred CCCchHHHHHHHHHHHCCCCC--CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHH
Q 037537 209 HREGLEALQLFQEMVSLQLGL--DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDC 286 (677)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A 286 (677)
....+....+.....+..+.| +..-|.-+..++...|.+..|..++..+.......+..+|--+..+|...|. .+.|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-YEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-HHHH
Confidence 454555555555555555434 5667888999999999999999999999988766778899999999999999 9999
Q ss_pred HHHHhhCCC--CCh-hhHHHHHhhhcccCCCHHHHHHHHHHHhhcC--------CCCCcchHHHHHHHhhccC-hh----
Q 037537 287 MKVFEEIPQ--PDL-VLWNTMISGYSQKEEYSDQALGCFKKLNRVG--------YHPDDCSFVCVISACSNLS-PS---- 350 (677)
Q Consensus 287 ~~~f~~~~~--~~~-~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g--------~~p~~~t~~~ll~a~~~~~-~~---- 350 (677)
...|+.+.. |+. ..--+|-.-+.+. |+.++|++.+..|...+ ..|+.........-+...| .+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~-g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQL-GNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhc-CCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999864 332 2333444556666 99999999999875221 2222222222222222333 22
Q ss_pred HHHHHHHHHHHhh-c----------------ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC------C--Ccc----
Q 037537 351 LGKQIHALTIKIE-I----------------RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE------H--NTV---- 401 (677)
Q Consensus 351 ~~~~i~~~~~~~~-~----------------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~--~~~---- 401 (677)
.+..+.....+.. + .+........++.+-.+.++.....+-...-.. . ...
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 2222221111100 0 000011222334444444443222222211100 1 111
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC---hHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNI--PPTNI--TF-VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE---GEH 473 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~ 473 (677)
.+.-++.++++.+++++|+.+...+....+ .++.. .+ ...+.++...+++..|..+++.|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 234567788999999999999998887542 22221 22 34456667899999999999999987665444 346
Q ss_pred HHHHHHHHhhcCChHHHHHHHHh
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
|++..+...+.|+-.-=.+++..
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666666666654444444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-11 Score=123.29 Aligned_cols=438 Identities=11% Similarity=0.045 Sum_probs=261.4
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCC
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (677)
||.++|..|+..|+.+.|- +|.-|.-...+....+++.++..-.+.++.+.++ .|-+.+|+.|..+|...||
T Consensus 27 tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 27 TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHHhccc
Confidence 6999999999999999998 9999999999999999999999988888887776 5778899999999999998
Q ss_pred hhH---HHHHhccCCC---CC----cc---------------hHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHH
Q 037537 81 IAS---ARQLFDQIPQ---PD----LV---------------SYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLS 135 (677)
Q Consensus 81 ~~~---A~~~f~~m~~---~~----~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 135 (677)
+.. .++.++.+.. +. .. .-...+.-..-.|.++.+++++..|.... -..++.
T Consensus 99 li~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa---~~~p~~ 175 (1088)
T KOG4318|consen 99 LILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA---WNAPFQ 175 (1088)
T ss_pred hHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc---ccchHH
Confidence 765 2221111111 00 00 01123334445566666666665554321 111222
Q ss_pred HHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCCc
Q 037537 136 GLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDEVSWNSMVVAYGQHREG 212 (677)
Q Consensus 136 ~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~ 212 (677)
.+|+-+.....-.+.+.......--.++...+.++++.-...|+++.|..++.+| |..-+..-+-.|+-+ .+..
T Consensus 176 vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~ 252 (1088)
T KOG4318|consen 176 VFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAA 252 (1088)
T ss_pred HHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccc
Confidence 2466665555566666665544433699999999999999999999999999999 333344444445544 7888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHH-----------HHHHH-----------------------
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQF-----------HAHLI----------------------- 258 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~-----------~~~~~----------------------- 258 (677)
.-+..+++-|.+.|+.|++.|+..-+..+...|....+... ...+.
T Consensus 253 q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~ 332 (1088)
T KOG4318|consen 253 QVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKK 332 (1088)
T ss_pred hHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhH
Confidence 88899999999999999999998877777664432221111 00110
Q ss_pred --HhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCC-------ChhhHHHHHhhhccc-C----------------
Q 037537 259 --KSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQP-------DLVLWNTMISGYSQK-E---------------- 312 (677)
Q Consensus 259 --~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~-~---------------- 312 (677)
=.|+.....+|...+...- .|. -++.+++-..+..| ++..+..++.-|.+. +
T Consensus 333 ~fLlg~d~~~aiws~c~~l~h-Qgk-~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~ 410 (1088)
T KOG4318|consen 333 LFLLGTDILEAIWSMCEKLRH-QGK-GEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL 410 (1088)
T ss_pred HHHhccccchHHHHHHHHHHH-cCC-CchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 0122222223322222211 233 44444444444321 223333333332221 0
Q ss_pred ----CCHHHHHHHHHHHhhcCCCCCcch----------------------------HHHHHHHhhccC-hhHHHHHHHHH
Q 037537 313 ----EYSDQALGCFKKLNRVGYHPDDCS----------------------------FVCVISACSNLS-PSLGKQIHALT 359 (677)
Q Consensus 313 ----~~~~~A~~l~~~m~~~g~~p~~~t----------------------------~~~ll~a~~~~~-~~~~~~i~~~~ 359 (677)
.+..+..++... ..||..- -..++..|.+.. .......-+..
T Consensus 411 ~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 411 NLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred hhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111111 1222110 001111111111 11111111111
Q ss_pred HHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CC
Q 037537 360 IKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNT------VSLNSMIAGYAQHGIGMEALRLFEWMLETN-IP 432 (677)
Q Consensus 360 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~ 432 (677)
...-+ +..|..||+......++++|....++...+|. .-+..+.+...+.+....+..++++|.+.- ..
T Consensus 486 e~~lf----~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~ 561 (1088)
T KOG4318|consen 486 EDLLF----AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENE 561 (1088)
T ss_pred HHHHh----hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCC
Confidence 11111 45788999999999999999999998887654 347888889999999999999999998732 23
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 433 PT-NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 433 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
|+ ..++-.+++.....|..+.-.++++-+..
T Consensus 562 ~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs 593 (1088)
T KOG4318|consen 562 PLVAIILFPLLNSGAPAGQQEKLKKLADILVS 593 (1088)
T ss_pred chHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 43 45566666666667766666666655543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=128.46 Aligned_cols=155 Identities=17% Similarity=0.258 Sum_probs=106.2
Q ss_pred HHHHHHHccCCHHHHHHHHhcCC-----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMP-----EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAH 447 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 447 (677)
.++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.|++.++. .|+ ......++..+..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 34444555566666666655532 245667888888899999999999999999985 564 7788889999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.|+.+++.++++...+. .+.|...+..+..+|...|+.++|+..+++. ++..|+|+.....+.
T Consensus 193 ~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~---------------~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKA---------------LKLNPDDPLWLLAYA 255 (280)
T ss_dssp TCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH---------------HHHSTT-HHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccc---------------ccccccccccccccc
Confidence 99999999999988875 3556778889999999999999999999876 467788999999999
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 037537 528 NIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~m~ 547 (677)
+++...|+.++|.+++++.-
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHT----------------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999987753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-09 Score=100.61 Aligned_cols=411 Identities=11% Similarity=0.096 Sum_probs=215.9
Q ss_pred HccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCc-chHHHHHHHHHhCCChhHHHHH
Q 037537 45 SKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDL-VSYNTLISAYADCGDTESALSL 118 (677)
Q Consensus 45 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~ 118 (677)
..++++..|+.+|++... .+...|-.-+.+=.++..+..|+.+|+.... |-+ ..|--.+-.--..|+...|.++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344555555555555554 3344454555555555555555555554332 211 1222222223334555555555
Q ss_pred HHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCee
Q 037537 119 FKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEV 197 (677)
Q Consensus 119 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~ 197 (677)
|++-.+- .|+...|++.|+.=.+-..++.|+.++++. -..|++.
T Consensus 164 ferW~~w-----------------------------------~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 164 FERWMEW-----------------------------------EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred HHHHHcC-----------------------------------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence 5554432 333444455555555555555555555554 2345555
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh----HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc--hhhHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY----TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN--SHIGSG 271 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 271 (677)
+|--...-=-++|+...|..+|+...+. -.|.. .|++...--.+....+.|.-++...++.- +.+ ...|..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~ 285 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHH
Confidence 5555555445555555555555544332 11121 22222222233445555666665555542 112 233333
Q ss_pred HHHHHHHcCCC--HHHHHHH-----HhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCc-------
Q 037537 272 LIDLYAKCSGD--MRDCMKV-----FEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDD------- 334 (677)
Q Consensus 272 li~~y~~~g~~--~~~A~~~-----f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~------- 334 (677)
++..=-+.|+. ++++.-- ++++.. -|-.+|--.+.---.. |+.+...++|++.... ++|-.
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIan-vpp~~ekr~W~R 363 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV-GDKDRIRETYERAIAN-VPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence 33333333320 3333222 122222 2334555455444445 6666666666666543 33321
Q ss_pred chHHHHHHHhh---ccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHH----ccCCHHHHHHHHhcCCC--CCcchHH
Q 037537 335 CSFVCVISACS---NLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYS----KCGNLEDARRLFDRMPE--HNTVSLN 404 (677)
Q Consensus 335 ~t~~~ll~a~~---~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~~--~~~~~~~ 404 (677)
..|.-+=-+|- ... .+..++++...++ +.|....++.-+--||+ ++.++..|++++....- |..-++-
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 11111111111 122 4555666655555 33333445554444444 56788888888876543 5556677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
.-|..-.+.++++....+|++.++-+ +-|..+|......=...|+.+.|..+|+.+++...+..-...|-+.|+.=...
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence 77777778888888888888888854 44567777777777788888888888888887533333345677777777788
Q ss_pred CChHHHHHHHHhCC
Q 037537 485 GKLTDAERLIEAMP 498 (677)
Q Consensus 485 g~~~~A~~~~~~m~ 498 (677)
|.++.|..++++..
T Consensus 521 ~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 521 GEFEKARALYERLL 534 (677)
T ss_pred chHHHHHHHHHHHH
Confidence 88888888888763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-10 Score=112.73 Aligned_cols=457 Identities=13% Similarity=0.146 Sum_probs=260.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHccCChHHHHHHHhhccc--cC------hhHHHHHHHHHHh
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSAYLSN-HFILLYSKCGCLSAAHHAFNQTQH--AN------VFSFNVLLAAYAR 77 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~ 77 (677)
+.+.......+|+..++.+++...-|+.-... .+-+.+.+...+.+|.+.++.... |+ ....|.+.-.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 34555556677777777777776655554432 233456677777888877765554 21 2234555556778
Q ss_pred cCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHH
Q 037537 78 QLRIASARQLFDQIPQ--PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLA 155 (677)
Q Consensus 78 ~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~ 155 (677)
.|.+++|+.-|+...+ ||..+--.|+-++..-|+-++..+.|.+|..-...||..-|. +..
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~~---------- 351 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KEK---------- 351 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CCc----------
Confidence 8999999999988664 776654445555666788888888999988766666665541 000
Q ss_pred HHhCCCCChhHHHHHH-----HHHHhcCChhHHHH-------HHhhcCCCCCeee---HH------------------HH
Q 037537 156 IYCGFDHYASVNNSLL-----TCYSRNGFLDEAKR-------VFYEMGEIKDEVS---WN------------------SM 202 (677)
Q Consensus 156 ~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~-------~f~~m~~~~~~~~---~~------------------~l 202 (677)
-.|+....|.-| .-.-+.+. ..|++ +..-+ ..||-.. |- .-
T Consensus 352 ----ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~k 425 (840)
T KOG2003|consen 352 ----DDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINK 425 (840)
T ss_pred ----CCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence 011211111111 11111111 11111 11111 2222111 11 01
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH--HHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcC
Q 037537 203 VVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA--SILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCS 280 (677)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 280 (677)
..-|.++|+++.|++++.-..+..-+.-+..-+ .++.-.-.-.++..|.++-+..+... .-+....+.--+.-...|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 234778899999999888886654332222222 22222223346666766666655332 111111111111122237
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHh---hhcccCCCHHHHHHHHHHHhhcCCCCCc-chHHHHHHHhhccChhHHHHHH
Q 037537 281 GDMRDCMKVFEEIPQPDLVLWNTMIS---GYSQKEEYSDQALGCFKKLNRVGYHPDD-CSFVCVISACSNLSPSLGKQIH 356 (677)
Q Consensus 281 ~~~~~A~~~f~~~~~~~~~~~~~li~---~~~~~~~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~i~ 356 (677)
+ +++|.+.+.+....|...-.+|.. .+-.. |+.++|++.|-++.. +-.+. .....+-+-+..+. +.+..|-
T Consensus 505 d-~dka~~~ykeal~ndasc~ealfniglt~e~~-~~ldeald~f~klh~--il~nn~evl~qianiye~le-d~aqaie 579 (840)
T KOG2003|consen 505 D-LDKAAEFYKEALNNDASCTEALFNIGLTAEAL-GNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLE-DPAQAIE 579 (840)
T ss_pred c-HHHHHHHHHHHHcCchHHHHHHHHhcccHHHh-cCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhh-CHHHHHH
Confidence 7 888888888887666544333322 23334 788889888877643 22222 22222222232222 2222333
Q ss_pred HHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037537 357 ALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP 433 (677)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 433 (677)
-++....+.|+++.+.+.|.+.|-+.|+-..|.+.+-.--+ -|+.+..-|..-|....-+++|+..|++.-- +.|
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 33444455565588888888888888888888776543322 3555555566667777778888888888765 688
Q ss_pred CHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 434 TNITFVSVLSACA-HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 434 ~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+..-|..++..|. +.|++.+|..++...-+ .++-|.....-|+...+..|. .+|.++-+++
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 8888888877774 67888888888888766 466677777788887777763 3444444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-07 Score=95.91 Aligned_cols=508 Identities=13% Similarity=0.040 Sum_probs=339.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhc
Q 037537 13 RDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFD 89 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~ 89 (677)
++...|+.++....+.+ |.++..|-+-.+.--..|.+..|+.+...--+ .+..+|-.-+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 56677888888888777 55555665555555667777777765543332 2222232211 2333444444444
Q ss_pred cCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHH
Q 037537 90 QIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVN 167 (677)
Q Consensus 90 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~ 167 (677)
......+.+-..-+.+---..+...=.+++++.++. -|+++. |=++.....+ .++.++...++.- +.+...|
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw 413 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW 413 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH
Confidence 333211111111111111112222233444444443 244332 2223333333 4555555554442 3333333
Q ss_pred HHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCHhHHHHHHHHH
Q 037537 168 NSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQE----MVSLQLGLDMYTLASILTAF 241 (677)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~pd~~t~~~ll~a~ 241 (677)
-+|++..-++.|.+++++. ....+...|-+-...=-.+|+.+....+..+ +...|+..+...|..=..+|
T Consensus 414 ----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 414 ----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 4566677788899998877 3445677788777777788888888877755 45678888988888888889
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHH
Q 037537 242 TSLEDLVGGLQFHAHLIKSGFHQNS--HIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSD 316 (677)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~ 316 (677)
-..|..-.+..+....+..|++... .+|..-.+.+.+.+. ++-|+.+|....+ .+...|......--.. |..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp~k~slWlra~~~ek~h-gt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFPCKKSLWLRAAMFEKSH-GTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhccchhHHHHHHHHHHHhc-CcHH
Confidence 8889888888888888888875543 567777778888888 9999999887764 4556777766655555 7888
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcC
Q 037537 317 QALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRM 395 (677)
Q Consensus 317 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 395 (677)
+-..+|++....- +-....+.......-..| ...++.+...+..... ++..++-+-+..-.....++.|+.+|.+.
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p--nseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP--NSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888898888752 222333333333344456 7788888777766543 33678888888888999999999999887
Q ss_pred CC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH
Q 037537 396 PE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE 472 (677)
Q Consensus 396 ~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 472 (677)
.. +....|.--+...-..+..++|++++++.++. -|+ ...|..+-..+-+.++++.|...|..=.+. .+-.+.
T Consensus 645 r~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ip 720 (913)
T KOG0495|consen 645 RSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIP 720 (913)
T ss_pred hccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCch
Confidence 64 66777877777777788999999999998884 566 567777777888888999888887765532 333466
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
.|-.|.++=-+.|.+-.|..++++.. --+|+|...|...+.+-.+.|..+.|..+..+..+. .
T Consensus 721 LWllLakleEk~~~~~rAR~ildrar---------------lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--c 783 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRAR---------------LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--C 783 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHH---------------hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 78888888889999999999998874 335889999999999999999999999888777654 3
Q ss_pred cCCceeEEE
Q 037537 553 KKPGFSWIE 561 (677)
Q Consensus 553 ~~~~~s~~~ 561 (677)
|..|.-|.+
T Consensus 784 p~sg~LWaE 792 (913)
T KOG0495|consen 784 PSSGLLWAE 792 (913)
T ss_pred CccchhHHH
Confidence 567777754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-10 Score=116.34 Aligned_cols=278 Identities=9% Similarity=0.085 Sum_probs=168.6
Q ss_pred cCChhHHHHHHhhcCCCC--Cee-eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH--HHHHHHccCCChHHHH
Q 037537 177 NGFLDEAKRVFYEMGEIK--DEV-SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA--SILTAFTSLEDLVGGL 251 (677)
Q Consensus 177 ~g~~~~A~~~f~~m~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~ 251 (677)
.|+++.|++.+... +.. +.. .|-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~-~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRN-ADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666666655 221 111 1222223335666666666666666552 33332222 2233445556666666
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC
Q 037537 252 QFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH 331 (677)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~ 331 (677)
+.++.+.+.. +.+..+...+...|.+.|+ +++|.+++..+ .+.+..
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gd-w~~a~~~l~~l--------------------------------~k~~~~ 219 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGA-WSSLLDILPSM--------------------------------AKAHVG 219 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHh-HHHHHHHHHHH--------------------------------HHcCCC
Confidence 6655555544 3344455555555555555 55555555444 443322
Q ss_pred CCcc-------hHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchH
Q 037537 332 PDDC-------SFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSL 403 (677)
Q Consensus 332 p~~~-------t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~ 403 (677)
++.. +|..++..-.... .+...+.+....+ ..+.+ +.+...+...+.+.|+.++|.+++++..+.....-
T Consensus 220 ~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~ 297 (398)
T PRK10747 220 DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR-KTRHQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER 297 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH-HHhCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 1110 1111111111111 1111222222111 11223 77888899999999999999999988766433333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
-.++.+....++.+++++..+...+.. +-|...+..+...|...+++++|.+.|+.+.+ ..|+...+..+..++.+
T Consensus 298 l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 298 LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDR 373 (398)
T ss_pred HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHH
Confidence 334556666799999999999999853 44466788899999999999999999999985 48999999999999999
Q ss_pred cCChHHHHHHHHhC
Q 037537 484 AGKLTDAERLIEAM 497 (677)
Q Consensus 484 ~g~~~~A~~~~~~m 497 (677)
.|+.++|.+.+++-
T Consensus 374 ~g~~~~A~~~~~~~ 387 (398)
T PRK10747 374 LHKPEEAAAMRRDG 387 (398)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999865
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-10 Score=103.78 Aligned_cols=308 Identities=15% Similarity=0.154 Sum_probs=220.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHHcCCCH
Q 037537 208 QHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQ---NSHIGSGLIDLYAKCSGDM 283 (677)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~ 283 (677)
-++++++|+++|-+|.+. .| +..+-.++-+.|.+.|..+.|..+|..+.++.--+ .......|..-|...|- +
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl-~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL-L 123 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh-h
Confidence 357889999999999873 22 23334566677888899999999999888753111 12344556777888899 9
Q ss_pred HHHHHHHhhCCCCCh---hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHH
Q 037537 284 RDCMKVFEEIPQPDL---VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTI 360 (677)
Q Consensus 284 ~~A~~~f~~~~~~~~---~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~ 360 (677)
|.|+.+|..+.+.+. ...-.|+..|-.. .+|++|++.-+++...|-++..+-.
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eI----------------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEI----------------------- 179 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHH-----------------------
Confidence 999999999876333 3556678889888 9999999999999887655554333
Q ss_pred HhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037537 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNIT 437 (677)
Q Consensus 361 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 437 (677)
...|.-|...+....+.+.|..++.+..+. .+..=-.+...+...|+++.|++.++...+++..--..+
T Consensus 180 --------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 180 --------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 445566677777778889999999887652 333344456778899999999999999998753333567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHH-HhCCCCCChHHHHHHHHHhccC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLI-EAMPFNPGSIALKAANHFLQLE 516 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~l~~l~ 516 (677)
...|..+|.+.|+.+++...+..+.+. .+....-..+.+.-....-.+.|...+ +....+|+.
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~------------- 315 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM------------- 315 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-------------
Confidence 888999999999999999999988865 444444455555444444455555554 344444443
Q ss_pred CCCchhHHHHHHHH---HhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEE
Q 037537 517 PSNAVPYVMLANIY---AASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFV 570 (677)
Q Consensus 517 p~~~~~~~~l~~~y---~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~ 570 (677)
..+..|+..- +..|++.+.+.+++.|....++..|-+.....+-+.|.|.
T Consensus 316 ----~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 316 ----RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ----HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 3344455443 2347799999999999988888888887777777777665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-10 Score=117.32 Aligned_cols=282 Identities=15% Similarity=0.125 Sum_probs=202.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHHcCCCHHHHHH
Q 037537 211 EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSG--FHQNSHIGSGLIDLYAKCSGDMRDCMK 288 (677)
Q Consensus 211 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~~A~~ 288 (677)
+..+|+.+|...... +.-+......+-++|-..+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.----|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456788888774432 33334666677778888888888888888887653 233556676666544332110111223
Q ss_pred HHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCc
Q 037537 289 VFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNR 368 (677)
Q Consensus 289 ~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~ 368 (677)
+.+.. .-...+|-++-..|.-. ++.+.|++.|++..+ +.|+-
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQ--ldp~f---------------------------------- 454 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQ--LDPRF---------------------------------- 454 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhc--cCCcc----------------------------------
Confidence 33332 33457888888888887 888889888888775 23321
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLN---SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
..+|+-+..-+.....+|.|...|+.....|+..|| .+...|.++++.+.|+-.|++.++-+ +-|.+....+...+
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQ 533 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHH
Confidence 445566666666677899999999988876666555 46778999999999999999998843 33466777777788
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
-+.|+.|+|+++++++.. +.|. +-.--..+..+.-.++.++|+..+++.. ++-|++...|.
T Consensus 534 ~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk---------------~~vP~es~v~~ 595 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELK---------------ELVPQESSVFA 595 (638)
T ss_pred HHhhhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH---------------HhCcchHHHHH
Confidence 889999999999999874 4553 3333344566778899999999998874 67789999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 525 MLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++..+|-+.|+.+.|+.-|.-|.+..
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999999999999999888876643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.3e-10 Score=114.72 Aligned_cols=220 Identities=14% Similarity=0.045 Sum_probs=126.1
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHH
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 249 (677)
..+...|+++.|...++++ ...| +......+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------- 228 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------- 228 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------
Confidence 4455566666666666665 2222 3344555556666666666666666666555433211 110000
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
...+..++....+..+ .+...++++.++. .+......+...+... |+.++|.+++.+..
T Consensus 229 ----------------~~a~~~l~~~~~~~~~-~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~-g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ----------------QQAWIGLMDQAMADQG-SEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC-DDHDTAQQIILDGL 290 (398)
T ss_pred ----------------HHHHHHHHHHHHHhcC-HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 0112222222223233 5556666666652 4555666677777777 77788888777776
Q ss_pred hcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchH
Q 037537 327 RVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSL 403 (677)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~ 403 (677)
+. .||. . -.++......++.+++.+..+...+ .|...+
T Consensus 291 ~~--~~~~-~------------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~ 331 (398)
T PRK10747 291 KR--QYDE-R------------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLW 331 (398)
T ss_pred hc--CCCH-H------------------------------------HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHH
Confidence 53 2331 1 0111222234666777766666554 244456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMK 462 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 462 (677)
.++...+.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.++++...
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777778888888888888777 46777777777777888888888877777654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-12 Score=87.44 Aligned_cols=50 Identities=30% Similarity=0.512 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-09 Score=111.91 Aligned_cols=318 Identities=16% Similarity=0.181 Sum_probs=221.8
Q ss_pred HHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHH
Q 037537 173 CYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 173 ~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~ 249 (677)
.+++ |++++|.+++.++ ..+.+...|.+|...|-+.|+.++++..+-..- .+.| |..-|..+-.-..+.|+++.
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHH
Confidence 3444 9999999999998 334567789999999999999999988764443 3445 45667777777788899999
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCCh----h----hHHHHHhhhcccCCCHHHHHHH
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDL----V----LWNTMISGYSQKEEYSDQALGC 321 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~----~----~~~~li~~~~~~~~~~~~A~~l 321 (677)
|.-.+..+++.. +++....---..+|-+.|+ ...|..-|.++.+.+. . .--.++..|... ++.+.|.+.
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~-~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~-~~~e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGD-LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH-NERERAAKA 302 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh-HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 999999999886 5666666667788888898 8888888887764222 1 111234444445 445666666
Q ss_pred HHHHhhcC-CCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---
Q 037537 322 FKKLNRVG-YHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--- 397 (677)
Q Consensus 322 ~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--- 397 (677)
+......+ -..+ ...++.++.+|.+...++.|......+..
T Consensus 303 le~~~s~~~~~~~-----------------------------------~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 303 LEGALSKEKDEAS-----------------------------------LEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred HHHHHhhcccccc-----------------------------------ccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 66655421 1111 23334444444444444444433322211
Q ss_pred -----------------------CCcchHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcc
Q 037537 398 -----------------------HNTVSLN----SMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHT 448 (677)
Q Consensus 398 -----------------------~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~ 448 (677)
++..+|+ -+.-++......+....+.....+..+.|+ ...|.-+..++...
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 1222222 222334444444445555555566664444 56788899999999
Q ss_pred CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLAN 528 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~ 528 (677)
|.+.+|..+|..+....+ .-+...|--+..+|...|..++|.+.+++. +.+.|++..+-..|..
T Consensus 428 ~~~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv---------------l~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREG-YQNAFVWYKLARCYMELGEYEEAIEFYEKV---------------LILAPDNLDARITLAS 491 (895)
T ss_pred ccHHHHHHHHHHHhcCcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHH---------------HhcCCCchhhhhhHHH
Confidence 999999999999987622 234678999999999999999999999876 6788999999999999
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 037537 529 IYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 529 ~y~~~g~~~~a~~~~~~m~ 547 (677)
.|-+.|+.++|.+.+..|.
T Consensus 492 l~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhcCCHHHHHHHHhccc
Confidence 9999999999999999876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-12 Score=87.53 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=48.2
Q ss_pred CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc
Q 037537 194 KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS 243 (677)
Q Consensus 194 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 243 (677)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-09 Score=112.61 Aligned_cols=281 Identities=11% Similarity=0.026 Sum_probs=168.5
Q ss_pred CCCchHHHHHHHHHHHCCCCCCH-hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHH
Q 037537 209 HREGLEALQLFQEMVSLQLGLDM-YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCM 287 (677)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~ 287 (677)
.|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+ .+.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~-~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE-LHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-HHHHH
Confidence 45555555555554432 2322 22223334444555566666655555443211112233334555555566 66666
Q ss_pred HHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHh---hccC-hhHHHHHHHHHH
Q 037537 288 KVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISAC---SNLS-PSLGKQIHALTI 360 (677)
Q Consensus 288 ~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~~~~-~~~~~~i~~~~~ 360 (677)
..++.+.+ | +...+..+...+.+. |++++|.+++..+.+.++.++......-..+. ...+ .+.+........
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666542 2 334555666666666 77777777777777665432221111111111 0111 111111222222
Q ss_pred Hhhc---ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcch---HHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037537 361 KIEI---RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVS---LNSMIAGYAQHGIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 361 ~~~~---~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 432 (677)
+... ..+ +..+..+...+.+.|+.++|.+++++..+ ||... +..........++.+.+++.+++..+. .
T Consensus 253 ~~~p~~~~~~-~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 253 KNQPRHRRHN-IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHCCHHHhCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 2111 123 78889999999999999999999998876 43331 122222334457788999999888874 4
Q ss_pred CC-H--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 433 PT-N--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 433 p~-~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|+ . ....++...|.+.|++++|.++|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 4 45668888899999999999999954332 56899999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=122.52 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
..+...|.+.|+.++|.+.|++..+ | |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccc
Confidence 3344444444444444444444432 2 23344444444444555555444444444432 333334444444455555
Q ss_pred CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 450 KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 450 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
+.++|..+|+...+. -+.|+.....+.+++...|+.++|.++.++
T Consensus 229 ~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 229 RYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 555555555554432 112344444455555555555555554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-09 Score=103.47 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=155.8
Q ss_pred HHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHH
Q 037537 277 AKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGK 353 (677)
Q Consensus 277 ~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 353 (677)
.-+|+ ...|..-|+.... | +...|--+-..|.+. .+.++....|.+..+- .|
T Consensus 337 fL~g~-~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~-~~~~~~~~~F~~A~~l--dp--------------------- 391 (606)
T KOG0547|consen 337 FLKGD-SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE-NQSEKMWKDFNKAEDL--DP--------------------- 391 (606)
T ss_pred hhcCC-chhhhhhHHHHHhcCcccchHHHHHHHHHhhh-hccHHHHHHHHHHHhc--CC---------------------
Confidence 34466 6666666666542 2 222255566667777 7777777777776642 23
Q ss_pred HHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 354 QIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 354 ~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
.++.+|..-..++.-.+++++|..-|++... .++..|-.+..+.-+.+++++++..|++.++.
T Consensus 392 -------------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk- 457 (606)
T KOG0547|consen 392 -------------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK- 457 (606)
T ss_pred -------------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 2266777777777788899999999998765 35567777777778888999999999999886
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC---------hHHHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE---------GEHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (677)
++--+..|+.....+...++++.|.+.|+..++. .|+ +.+--+++-.--+ +++..|.+++++.
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA---- 529 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKA---- 529 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHH----
Confidence 4555788999999999999999999999988853 454 1111122221122 7788888887765
Q ss_pred ChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 502 GSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
++++|+...+|..|...-.+.|+.++|+++|++-.
T Consensus 530 -----------~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 530 -----------IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -----------HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999998754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-09 Score=97.67 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=210.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-cChh------HHHHHHHHHHhcCChhHH
Q 037537 12 RRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-ANVF------SFNVLLAAYARQLRIASA 84 (677)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~A 84 (677)
++..+.|..+|-+|.+.. +.+..+.-+|-+.|.+.|..+.|.++|+.+.+ ||.. +.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467889999999999865 66677788899999999999999999999888 5532 344566778899999999
Q ss_pred HHHhccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCC
Q 037537 85 RQLFDQIPQPD---LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFD 161 (677)
Q Consensus 85 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~ 161 (677)
+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++.+.+-++..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 99999987633 345667899999999999999999999887644433221
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILT 239 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 239 (677)
...|.-|...+....+++.|+.++.+. ...|+ +..--.+...+...|+++.|++.++...+.+..--+.+...+..
T Consensus 180 --AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 180 --AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred --HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 112234445555667888899999887 33333 33334455778899999999999999988775555677888899
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHh-hCC-CCChhhHHHHHhhhcccC--CCH
Q 037537 240 AFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFE-EIP-QPDLVLWNTMISGYSQKE--EYS 315 (677)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~-~~~-~~~~~~~~~li~~~~~~~--~~~ 315 (677)
+|...|+++++...+..+.+....++ .-..+-+.-..... .+.|..... ++. +|+...+..+|..-.... |..
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEG-IDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhC-hHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 99999999999999999888743333 33344443333344 666665554 443 588888888888665431 456
Q ss_pred HHHHHHHHHHhhcCC
Q 037537 316 DQALGCFKKLNRVGY 330 (677)
Q Consensus 316 ~~A~~l~~~m~~~g~ 330 (677)
.+.+.+++.|....+
T Consensus 335 k~sL~~lr~mvge~l 349 (389)
T COG2956 335 KESLDLLRDMVGEQL 349 (389)
T ss_pred hhhHHHHHHHHHHHH
Confidence 777888888876543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-08 Score=97.44 Aligned_cols=200 Identities=17% Similarity=0.118 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHH
Q 037537 313 EYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRL 391 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 391 (677)
|++++|.+.|++.+...-.-....|+.=|.+- ..+ ++++...+-.+ +++-.++..+.-.+.+.|--..+...|.++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~kl--h~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKL--HAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 77888888888877543322222333322222 222 44444333221 222223355666666667667777777776
Q ss_pred HhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCc
Q 037537 392 FDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE 468 (677)
Q Consensus 392 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 468 (677)
+-+... .|+....-|...|-+.|+-.+|.+.+-+--.. ++-|..|..-|...|....-++++..+|++.. -++
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liq 656 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQ 656 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcC
Confidence 655443 35566666777777777777776655443332 34455566666666666666777777777664 457
Q ss_pred cChHHHHHHHH-HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 469 PEGEHYSCMID-LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 469 p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
|+..-|..||. .+.|.|++++|.++++... +.-|.|....-.|..++...|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~h---------------rkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIH---------------RKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHH---------------HhCccchHHHHHHHHHhcccc
Confidence 77777766654 3456677777777776652 122445555555555555555
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-07 Score=92.46 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=129.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP-TNITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 444 (677)
..+|+-+..-|....+...|.+.+++..+ .|-..|-.|..+|.-.+...-|+-.|++..+. +| |...|.+|...
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGEC 441 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 66778888889999999999999987665 57789999999999999999999999999984 55 58899999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
|.+.++.++|...|...... | ..+...+..|.++|-+.++.++|...+++-... ...--+.+|+...+-.
T Consensus 442 Y~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~--------~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV--------SELEGEIDDETIKARL 511 (559)
T ss_pred HHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHhhcccchHHHHHHH
Confidence 99999999999999998874 3 335678999999999999999999998765210 0000122333333444
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 037537 525 MLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~ 545 (677)
-|..-+.+.++|++|...-.+
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHH
Confidence 477778888999998776554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-07 Score=93.86 Aligned_cols=435 Identities=13% Similarity=0.135 Sum_probs=265.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHhhccc-----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHh
Q 037537 34 AYLSNHFILLYSKCGCLSAAHHAFNQTQH-----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYAD 108 (677)
Q Consensus 34 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 108 (677)
+.+|..-+....++|++..-+..|++... .....|...+......|-++-+.++++.-.+-++..-+.-|..++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35566666777788999999999998877 3445788888888889999999999999888777778889999999
Q ss_pred CCChhHHHHHHHHhHhcC------CCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCC--CC--hhHHHHHHHHHHh
Q 037537 109 CGDTESALSLFKDMREKR------FDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFD--HY--ASVNNSLLTCYSR 176 (677)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~--~~--~~~~~~li~~~~~ 176 (677)
.+++++|.+.+...+... .+.+...|.-+..-.++..+ ....+ +.+++.|+. +| ...|++|.+.|.+
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 999999999998876432 23445556666666666665 22222 223344432 23 4689999999999
Q ss_pred cCChhHHHHHHhhc-CCCCCeeeHHHHHHHHHhCC----------------C------chHHHHHHHHHHHCCC-C----
Q 037537 177 NGFLDEAKRVFYEM-GEIKDEVSWNSMVVAYGQHR----------------E------GLEALQLFQEMVSLQL-G---- 228 (677)
Q Consensus 177 ~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~~~~g----------------~------~~~A~~~~~~m~~~g~-~---- 228 (677)
.|.++.|+.++++. ...-.+.-++.+..+|++-. + .+-.+.-|+.+...+. -
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999986 11223333555555554321 1 1122233333333211 0
Q ss_pred -----C-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhC-----CCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCC
Q 037537 229 -----L-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSG-----FHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPD 297 (677)
Q Consensus 229 -----p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~ 297 (677)
| +..+|..-.. ...|+..+-...+..+++.- ...-...|..+.+.|-..|+ +++|+.+|++..+-+
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~-l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD-LDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc-HHHHHHHHHHhhcCC
Confidence 1 1112211111 22355666667777777642 11223567888999999999 999999999987643
Q ss_pred hh-------hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC-----------------cchHHHHHHHhhccC-hhHH
Q 037537 298 LV-------LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD-----------------DCSFVCVISACSNLS-PSLG 352 (677)
Q Consensus 298 ~~-------~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~-----------------~~t~~~ll~a~~~~~-~~~~ 352 (677)
-. +|-.....=.+. .+++.|+++.++....--.|. ...|...+..-...| ++..
T Consensus 418 y~~v~dLa~vw~~waemElrh-~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRH-ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 33 444444444566 678888888777653211111 111222333334456 7777
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC----CCcc-hHHHHHHHHHH---cCChHHHHHHHH
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE----HNTV-SLNSMIAGYAQ---HGIGMEALRLFE 424 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~---~g~~~~A~~l~~ 424 (677)
+.++..++...+... . +.-...-.+-...-++++.+++++-.. |++. .||+-+.-+.+ .-..+.|..+|+
T Consensus 497 k~vYdriidLriaTP-q-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATP-Q-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHhcCCH-H-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 777777777665443 1 112222223344557777777776543 4432 57766655543 224677888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHH
Q 037537 425 WMLETNIPPTNITFVSVLSAC--AHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMI 478 (677)
Q Consensus 425 ~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li 478 (677)
+.++ |.+|...-+..|+-+- -..|....|..++++... ++++. ...|+..|
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 8877 6666654333333322 245777778888877665 45443 34455544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-08 Score=106.94 Aligned_cols=283 Identities=12% Similarity=0.017 Sum_probs=179.0
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCChHHHHHHHhhccc--cChh--HHHHHHHHHHhcCChhHH
Q 037537 10 VGRRDLVTGKSLHALYLKNLVPFSA-YLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVF--SFNVLLAAYARQLRIASA 84 (677)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~--~~~~li~~~~~~g~~~~A 84 (677)
...|+++.|.+.+....+.. |++ ..+-....+..+.|+.+.|.+.+....+ |+.. +.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34578888888887776654 333 3334445667778888888888888655 4432 333346777778888888
Q ss_pred HHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCC
Q 037537 85 RQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFD 161 (677)
Q Consensus 85 ~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~ 161 (677)
...++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.++. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 888888765 3 4556778888888888888888888888877643221 1110000
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH-HH
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEMGEI---KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA-SI 237 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~l 237 (677)
..+..++..-......+...+.++.. +. .+...+..+...+...|+.++|.+++++..+.. ||..... .+
T Consensus 230 ---~a~~~~l~~~~~~~~~~~L~~~~~~~-p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~ 303 (409)
T TIGR00540 230 ---KAEIGLLDEAMADEGIDGLLNWWKNQ-PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPL 303 (409)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHC-CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHH
Confidence 00111111111122233444444444 22 266667777788888888888888888887743 4433210 12
Q ss_pred HH--HHccCCChHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHHcCCCHHHHHHHHhh--C--CCCChhhHHHHHhhhc
Q 037537 238 LT--AFTSLEDLVGGLQFHAHLIKSGFHQNS--HIGSGLIDLYAKCSGDMRDCMKVFEE--I--PQPDLVLWNTMISGYS 309 (677)
Q Consensus 238 l~--a~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~~A~~~f~~--~--~~~~~~~~~~li~~~~ 309 (677)
+. .....++.+.+.+.++...+.. +.|. ....++...+.+.|+ +++|.+.|+. . ..|+...+..+...+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 22 2233466677777777766652 3333 556677788888888 8888888883 4 2577777778888888
Q ss_pred ccCCCHHHHHHHHHHHh
Q 037537 310 QKEEYSDQALGCFKKLN 326 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~ 326 (677)
+. |+.++|.+++++-.
T Consensus 382 ~~-g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QA-GDKAEAAAMRQDSL 397 (409)
T ss_pred Hc-CCHHHHHHHHHHHH
Confidence 88 88888888888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-08 Score=98.34 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=140.2
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
+.+...+.+-|+-.++.++|...|++..+- -...|+.|..-|....+...|++-++..++-. +.|...|-.+..+|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 455667778888899999999999988763 45679999999999999999999999999964 66788999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
.-.+...-|+-+|++..+ .+| |...|.+|.+.|.+.+++++|.+-|++.-.-.+ -+...++
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d---------------te~~~l~ 470 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD---------------TEGSALV 470 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc---------------cchHHHH
Confidence 999999999999999985 466 789999999999999999999999998742222 2557899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 037537 525 MLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.|.++|-+.++.++|...+.+-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-06 Score=85.79 Aligned_cols=399 Identities=12% Similarity=0.127 Sum_probs=236.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-hHHHHHHHHH-HhCCCCChhHHHHHHHHHH
Q 037537 98 SYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-LIKQLHCLAI-YCGFDHYASVNNSLLTCYS 175 (677)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~~i~~~~~-~~g~~~~~~~~~~li~~~~ 175 (677)
.|++|...|.+.|.++.|.++|++-.+.- .+..-|+.+..+++.-.. ......+... +.|-..+..
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~---------- 317 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV---------- 317 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh----------
Confidence 59999999999999999999999877642 344456677777766554 2222222111 111111111
Q ss_pred hcCChhHHHHHHhhc--------------CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC------HhHHH
Q 037537 176 RNGFLDEAKRVFYEM--------------GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD------MYTLA 235 (677)
Q Consensus 176 ~~g~~~~A~~~f~~m--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~t~~ 235 (677)
+++-...-|+.+ ....++..|..-... ..|++.+-...|.+..+. +.|- ...|.
T Consensus 318 ---dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 318 ---DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWV 391 (835)
T ss_pred ---hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHH
Confidence 112222222222 122344556554443 457777888888887653 3332 23466
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhCCCCc---hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-----------------
Q 037537 236 SILTAFTSLEDLVGGLQFHAHLIKSGFHQN---SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ----------------- 295 (677)
Q Consensus 236 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~~A~~~f~~~~~----------------- 295 (677)
.+.+.|-..|+++.|+.+|+...+..++.- ..+|..-..+=.+..+ ++.|.++.+....
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 777778888999999999998887654332 3455555566666666 8888888776531
Q ss_pred ----CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccc
Q 037537 296 ----PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRIS 370 (677)
Q Consensus 296 ----~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 370 (677)
++...|+..+.---.. |-++....+++++.+..+.......+-.+- .-... .+.+.++++.-+..=-.|..-.
T Consensus 471 ~rlhrSlkiWs~y~DleEs~-gtfestk~vYdriidLriaTPqii~NyAmf-LEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESL-GTFESTKAVYDRIIDLRIATPQIIINYAMF-LEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1223455555444444 667777778888877554322221111110 11122 4555555554444322333345
Q ss_pred hhHHHHHHHHc---cCCHHHHHHHHhcCCCCC-cchHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 037537 371 VNNALVAMYSK---CGNLEDARRLFDRMPEHN-TVSLNSMIAGYA----QHGIGMEALRLFEWMLETNIPPTN--ITFVS 440 (677)
Q Consensus 371 ~~~~li~~y~k---~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ 440 (677)
+|+..+.-+.+ .-+++.|+.+|++..+-- +..--++--.|+ .+|....|++++++.-.. +++.. ..|+.
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni 627 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 66666655544 236899999999887621 222233333444 478889999999997653 56553 57888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCccChH---HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE---HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
.|.--...=-+...+.++++.++. -|+.. ..--..++=.+.|.++.|..++.....- .+|
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~--------------~dP 690 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI--------------CDP 690 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc--------------CCC
Confidence 876555444455667788888764 45533 2334456667889999999999765321 122
Q ss_pred -CCchhHHHHHHHHHhcCC
Q 037537 518 -SNAVPYVMLANIYAASGK 535 (677)
Q Consensus 518 -~~~~~~~~l~~~y~~~g~ 535 (677)
.+...|.+.=.-=.++|+
T Consensus 691 r~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred cCChHHHHHHHHHHHhcCC
Confidence 245667777777788888
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-09 Score=107.58 Aligned_cols=278 Identities=16% Similarity=0.098 Sum_probs=183.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc------cChhHHHHHHHHHHhcCC-hhHHHH
Q 037537 14 DLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH------ANVFSFNVLLAAYARQLR-IASARQ 86 (677)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~-~~~A~~ 86 (677)
+.++|...|..+ ...+..+..+...+..+|-..+++++|+++|+.+.+ .+...|+..+-.+-+.-. --.|..
T Consensus 334 ~~~~A~~~~~kl-p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKL-PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhh-HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567888888884 444456668888889999999999999999998887 566677776654432111 112333
Q ss_pred HhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhH
Q 037537 87 LFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASV 166 (677)
Q Consensus 87 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~ 166 (677)
+.+.++ -.+.+|-++...|.-+++.+.|++.|++..+. .|+ + .+.
T Consensus 413 Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~-f-------------------------------aYa 457 (638)
T KOG1126|consen 413 LIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR-F-------------------------------AYA 457 (638)
T ss_pred HHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc-c-------------------------------chh
Confidence 443333 35678999999999999999999999888753 231 2 223
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHc
Q 037537 167 NNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWN---SMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFT 242 (677)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~ 242 (677)
|+-+-.=+.....+|.|.+.|+.. ...|...|| .|.-.|.+.++++.|.-.|+...+. -| +.+....+...+-
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~A-l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKA-LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQH 534 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhh-hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHH
Confidence 344444455567788888888887 555555544 4566788888888888888888763 34 3455555566667
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHH
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
+.|+.++|+++++.+...... |+..---....+...++ .++|...++++++ | +...+-.+...|.+. |+.+.|+
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~-~~~~~Al 611 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRL-GNTDLAL 611 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-ccchHHH
Confidence 778888888888887766522 22222223333444466 7788877777763 3 445566666777777 7777777
Q ss_pred HHHHHHhhcCCCCC
Q 037537 320 GCFKKLNRVGYHPD 333 (677)
Q Consensus 320 ~l~~~m~~~g~~p~ 333 (677)
.-|.-+.+-..++.
T Consensus 612 ~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 612 LHFSWALDLDPKGA 625 (638)
T ss_pred HhhHHHhcCCCccc
Confidence 77777766444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-08 Score=92.64 Aligned_cols=278 Identities=10% Similarity=0.074 Sum_probs=175.2
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHH
Q 037537 209 HREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMK 288 (677)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~ 288 (677)
.|++.+|.++..+-.+.+-.| ...|.....+.-..||.+.+-.++..+.+..-.++..+.-+........|+ .+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d-~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD-YPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-chhHHH
Confidence 355555555555544433222 223333444444555555555555555544324444444455555555555 555555
Q ss_pred HHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCc-------chHHHHHHHhhccC-hhHHHHHHH
Q 037537 289 VFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDD-------CSFVCVISACSNLS-PSLGKQIHA 357 (677)
Q Consensus 289 ~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~-~~~~~~i~~ 357 (677)
-.+++. ..+..........|.+. |++.+.+.++..|.+.|+-.|+ .++..+|+-+...+ .+.-+..+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 444432 34555566666666666 6666666666666666654432 45666666665555 333222222
Q ss_pred HHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 037537 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN 435 (677)
Q Consensus 358 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 435 (677)
.. ......+ +.+..+++.-+..||+.++|.++..+..++ |.. -...-.+.+-++...-++..++-.+. .+-++
T Consensus 254 ~~-pr~lr~~-p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQ-PRKLRND-PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hc-cHHhhcC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 22 2233344 667788999999999999999998876653 333 22233455667777777777666654 24445
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+.+|-.-|.+.+.+.+|..+|+... ...|+..+|+-+.+++.+.|+.++|.+..++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 788888899999999999999999777 45899999999999999999999999998865
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-05 Score=79.22 Aligned_cols=441 Identities=13% Similarity=0.062 Sum_probs=211.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChh-HHHHHHHHHHhcCChhHHHHH
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVF-SFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~ 87 (677)
.+++...|+.+|+..+... ..+...|..-+.+-.++..+..|+.++++.+. |-+. .|-..+.+=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456677777887777665 44555666666666677777777777776665 3221 344444444455666667777
Q ss_pred hccCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCC--C
Q 037537 88 FDQIP--QPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGF--D 161 (677)
Q Consensus 88 f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~--~ 161 (677)
|+... +|+...|++.|..-.+-+..+.|..+|++..- +.|+..+|.--.+-=-+.|. .+++++...+..=- .
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 66654 36666677766666666666666666666553 34665555444444334444 45555555444311 1
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC---eeeHHHHHHHHHhCCCc---hHHHH-----HHHHHHHCCCCC
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD---EVSWNSMVVAYGQHREG---LEALQ-----LFQEMVSLQLGL 229 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~---~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~~g~~p 229 (677)
.+..++.+....=.++..++.|.-+|.-. ..-|. ...|..+...=-+.|+. ++++- -|+.++..+ +-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 11223333333334444555555554433 00111 11122222221222322 22221 112222221 12
Q ss_pred CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCch-------hhHHHHHHHH---HHcCCCHHHHHHHHhhCCC---C
Q 037537 230 DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNS-------HIGSGLIDLY---AKCSGDMRDCMKVFEEIPQ---P 296 (677)
Q Consensus 230 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y---~~~g~~~~~A~~~f~~~~~---~ 296 (677)
|-.+|--.++.-...|+.+...++++.++..- +|-. .+|--+=.++ ....+ ++.++++|+.... .
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed-~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED-VERTRQVYQACLDLIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhcCc
Confidence 33344444444444455555555555544331 2211 1111111111 11223 4455555433221 1
Q ss_pred ChhhHHHH----HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccch
Q 037537 297 DLVLWNTM----ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISV 371 (677)
Q Consensus 297 ~~~~~~~l----i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 371 (677)
...|+.-+ ..--.+. .+...|.+++.... |.-|-..+|..-|..-..++ .+..+.++...+..+ |.+..+
T Consensus 399 kkFtFaKiWlmyA~feIRq-~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~ 473 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQ-LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYA 473 (677)
T ss_pred ccchHHHHHHHHHHHHHHH-cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHH
Confidence 11222221 1122233 44455555554433 34455555544444444444 555555555444322 222445
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC-C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE-H----NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA 446 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 446 (677)
+......=...|+.+.|+.+|+-... | ....|-+-|.--...|.++.|..+|+++++.. +-..+|.++..--.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhc
Confidence 55555555566777777777765543 3 23456666666666777777777777777642 22224433332211
Q ss_pred -----ccC-----------CHHHHHHHHHHhHHh
Q 037537 447 -----HTG-----------KVAEGQKYFSMMKDM 464 (677)
Q Consensus 447 -----~~g-----------~~~~a~~~~~~m~~~ 464 (677)
..+ .+..|..+|+.+...
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 222 456777777776543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-08 Score=95.88 Aligned_cols=196 Identities=20% Similarity=0.200 Sum_probs=145.6
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
..+..+...+... |++++|.+.|++..+. .|+. ...+..+...
T Consensus 32 ~~~~~la~~~~~~-~~~~~A~~~~~~~l~~--~p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 32 KIRVQLALGYLEQ-GDLEVAKENLDKALEH--DPDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHHHHH
Confidence 4455566666666 7788888888777653 2332 3445566777
Q ss_pred HHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP-TNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 454 (677)
|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.|++..+....| +...+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 7788888888888876653 344567778888888999999999999988743223 244566677778889999999
Q ss_pred HHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 455 QKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
...++...+. .+.+...+..+...+.+.|++++|.+.+++.. +..|.++..+..++..+...|
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQ---------------QTYNQTAESLWLGIRIARALG 217 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHHh
Confidence 9999988864 22346678888889999999999999988763 334667778888889999999
Q ss_pred ChHHHHHHHHHHHh
Q 037537 535 KWEEVATIRRLMRD 548 (677)
Q Consensus 535 ~~~~a~~~~~~m~~ 548 (677)
++++|..+.+.+..
T Consensus 218 ~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 218 DVAAAQRYGAQLQK 231 (234)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999998887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-07 Score=89.68 Aligned_cols=288 Identities=12% Similarity=0.017 Sum_probs=202.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHHhcCChhHHHHH
Q 037537 12 RRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 87 (677)
.|++..|..+..+-.+.+ +.....|..-..+-.+.|+.+.+-+...++.+ ++..+.-.........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588999999888877777 44455566667778888999999999998887 3444566666778888999999887
Q ss_pred hccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCCh
Q 037537 88 FDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYA 164 (677)
Q Consensus 88 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~ 164 (677)
.+...+ .++..-....+.|.+.|++.+...++..|.+.|+--|...- ++ ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~---------------~l-----------e~ 229 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA---------------RL-----------EQ 229 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH---------------HH-----------HH
Confidence 776543 57788888999999999999999999999988765443211 00 11
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc
Q 037537 165 SVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT 242 (677)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 242 (677)
.+|+.+++=....+..+.-...++.. ....+...-.+++.-+.+.|+.++|.++..+-.+.+..|+ ...+-.+.
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l 305 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhc
Confidence 22344444333334444444455555 1223455556677778888888888888888888776666 22233456
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHH
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALG 320 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~ 320 (677)
+.++...-.+..+...+.- +.++..+.+|...|.+.+. +.+|...|+... .|+..+|+-+-.++.+. |++.+|.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~-w~kA~~~leaAl~~~~s~~~~~~la~~~~~~-g~~~~A~~ 382 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKL-WGKASEALEAALKLRPSASDYAELADALDQL-GEPEEAEQ 382 (400)
T ss_pred CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHc-CChHHHHH
Confidence 6677776666666655542 3445778888888888888 899988888664 58888888888899888 88888888
Q ss_pred HHHHHhhcCCCCC
Q 037537 321 CFKKLNRVGYHPD 333 (677)
Q Consensus 321 l~~~m~~~g~~p~ 333 (677)
.+++-...-..|+
T Consensus 383 ~r~e~L~~~~~~~ 395 (400)
T COG3071 383 VRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhcCCC
Confidence 8887664433343
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.7e-07 Score=87.43 Aligned_cols=392 Identities=9% Similarity=0.008 Sum_probs=231.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHhhccccChh---HHHHHHHHHHhcCChhH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFS-AYLSNHFILLYSKCGCLSAAHHAFNQTQHANVF---SFNVLLAAYARQLRIAS 83 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 83 (677)
-|-+.|++++|++.+...+... |+ +.-|......|...|+|++..+--....+-++. ++..-.+++-..|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 4667788888888888888764 55 677777777888888888877776666663333 33334445555666666
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHh--------Hh-cC--CCCCcccHHHHHHHhhcchhhHHHHH
Q 037537 84 ARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDM--------RE-KR--FDTDGFTLSGLITASSNNLCLIKQLH 152 (677)
Q Consensus 84 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~-~g--~~p~~~t~~~ll~a~~~~~~~~~~i~ 152 (677)
|+. -+|-.++..++..+.-..-+.+++... .+ .+ +-|......+.+..+...
T Consensus 202 al~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~-------- 264 (606)
T KOG0547|consen 202 ALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD-------- 264 (606)
T ss_pred HHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--------
Confidence 643 122333333333333333333333221 11 11 223332222223222111
Q ss_pred HHHHHhCC----CCChhHHHHHHHHHHhc-CChhHHHHHHhhc----CCCCCee-----------eHHHHHHHHHhCCCc
Q 037537 153 CLAIYCGF----DHYASVNNSLLTCYSRN-GFLDEAKRVFYEM----GEIKDEV-----------SWNSMVVAYGQHREG 212 (677)
Q Consensus 153 ~~~~~~g~----~~~~~~~~~li~~~~~~-g~~~~A~~~f~~m----~~~~~~~-----------~~~~li~~~~~~g~~ 212 (677)
...... ..|...-..+-..|... ..+..|...+.+- ...++.. +.+....-+.-.|+.
T Consensus 265 --~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 265 --PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred --ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 111111 11222222222222221 1234444443332 0111111 111111223446888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
..|.+.|+..+.....++.- |.-+..+|....+.++..+.|....+.. +.++.+|.--..++.-.++ +++|..=|++
T Consensus 343 ~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q-~e~A~aDF~K 419 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ-YEEAIADFQK 419 (606)
T ss_pred hhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH-HHHHHHHHHH
Confidence 89999999888865444332 6666777888888899999998888876 4566677766777776677 8999998888
Q ss_pred CCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCcc
Q 037537 293 IPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 293 ~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~ 369 (677)
... .++..|--+--+..+. +.+++++..|++..+. -|+. +
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkk--FP~~----------------------------------~ 462 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKK--FPNC----------------------------------P 462 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh--CCCC----------------------------------c
Confidence 764 3444555555555667 7888888888887764 2332 7
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--CC-------cch--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--HN-------TVS--LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NIT 437 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-------~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 437 (677)
.+||-....+...+++++|.+.|+...+ |+ +.. --+++..- =.+++..|++++++..+. .|- ...
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A 539 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQA 539 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHH
Confidence 7888888888899999999999987653 22 111 11111111 237788888888888874 444 577
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
|.+|...-.+.|++++|.++|+....
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888888888887654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-06 Score=79.27 Aligned_cols=435 Identities=12% Similarity=0.019 Sum_probs=232.0
Q ss_pred HHHHccCChHHHHHHHhhccc------cChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCh
Q 037537 42 LLYSKCGCLSAAHHAFNQTQH------ANVFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDT 112 (677)
Q Consensus 42 ~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 112 (677)
.-+....++..|..+++.-.. .++..| +...|-..|++++|..++..+.+ ++...|-.|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 334455566666666654443 112222 33455566777777777766543 4555566666666666777
Q ss_pred hHHHHHHHHhHhcCCCCCcccHHHHH-HHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 113 ESALSLFKDMREKRFDTDGFTLSGLI-TASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
.+|..+-... |+...-..++ ...-+.++ ...++|..+...- .-.-+|..+.--.-.+.+|.+++.+
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7776664433 2222222222 22222233 3333333332211 1112333333333457888888888
Q ss_pred c-CCCCCeeeHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc--cCCChHHHHHHHHHHHHhCCCCc
Q 037537 190 M-GEIKDEVSWNSM-VVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT--SLEDLVGGLQFHAHLIKSGFHQN 265 (677)
Q Consensus 190 m-~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~~ 265 (677)
+ ...|+-...|.- .-+|.+..-++-+.+++....+. -||+ |+..-+.+|. +.=+-..+++-...+.+.+-..
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 7 334555555543 34567777777777777777653 2443 3333333442 2222223333333333322111
Q ss_pred hhhHHHHHHHHHHcC-----CCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHH
Q 037537 266 SHIGSGLIDLYAKCS-----GDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCV 340 (677)
Q Consensus 266 ~~~~~~li~~y~~~g-----~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 340 (677)
-..+.-.++.. + -+.|.+++-.+...=...--.++--|.+. ++..+|..+.+++.- ..|-.. +
T Consensus 253 ----~~f~~~l~rHNLVvFrn-gEgALqVLP~L~~~IPEARlNL~iYyL~q-~dVqeA~~L~Kdl~P--ttP~Ey----i 320 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRN-GEGALQVLPSLMKHIPEARLNLIIYYLNQ-NDVQEAISLCKDLDP--TTPYEY----I 320 (557)
T ss_pred ----chhHHHHHHcCeEEEeC-CccHHHhchHHHhhChHhhhhheeeeccc-ccHHHHHHHHhhcCC--CChHHH----H
Confidence 01112222221 2 34555555443322222333445556777 899999988876531 222222 2
Q ss_pred HHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHHcCC
Q 037537 341 ISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSLNSMIAGYAQHGI 415 (677)
Q Consensus 341 l~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~ 415 (677)
+.+. +..++..-......+.-|.+.|+-.-+ ..+.--.+|.+.+.-..+
T Consensus 321 lKgv--------------------------v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 321 LKGV--------------------------VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred HHHH--------------------------HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 2221 111121111222334556666655433 223345667777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHH-HHHHHHhhcCChHHHHHHH
Q 037537 416 GMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYS-CMIDLLGRAGKLTDAERLI 494 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~ 494 (677)
+++.+-.++....--...|.+-| .+..|.+..|.+.+|+++|-.+... .+ .+..+|. .|...|.++|+.+-|.+++
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 88888888877775433444443 4667888889999999988776532 22 3445554 4567888999999999998
Q ss_pred HhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 495 EAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 495 ~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
-++....+ .-+....+.+-|.++|.+--|.+.|+.+....
T Consensus 452 lk~~t~~e----------------~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 452 LKTNTPSE----------------RFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhcCCchh----------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 88753221 12334566777888888888888888877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-05 Score=83.28 Aligned_cols=456 Identities=13% Similarity=0.077 Sum_probs=264.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccccC---hhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhC
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQHAN---VFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADC 109 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 109 (677)
.+..+++.| ..+.+..+....+.+.+.. ..+.....-.+...|+.++|......-.. .+.+.|..+.-.+-..
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344555555 4455666666666655511 11222222234456888888887766554 4567799888888888
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
.++++|++.|+..... .||.... +.-|--.-++.|+++.....-.+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qi--------------------------------lrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQI--------------------------------LRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHH--------------------------------HHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999988764 4553321 12222222233333333332222
Q ss_pred c-C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHhHHHHHHH------HHccCCChHHHHHHHHHHHHh
Q 037537 190 M-G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ-LGLDMYTLASILT------AFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 190 m-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~ 260 (677)
. . .......|..+..++.-.|++..|..++++..+.. -.|+...+.-... .....|.++.|.+.+......
T Consensus 135 LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 135 LLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 2 1 23345678888888888999999999988887654 2455555543322 235566667666655443322
Q ss_pred CCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhc-ccCCCHHHHH-HHHHHHhhcCCCCCcch
Q 037537 261 GFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYS-QKEEYSDQAL-GCFKKLNRVGYHPDDCS 336 (677)
Q Consensus 261 g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~-~~~~~~~~A~-~l~~~m~~~g~~p~~~t 336 (677)
+......--.-.+.+.+.++ +++|..++..+. .||.+-|+.....+. +- .+.-+++ .+|....+.-..-....
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~-lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~-~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQ-LEEAVKVYRRLLERNPDNLDYYEGLEKALGKI-KDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhh-HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhcCcccccch
Confidence 12222333445567777788 999999998876 467776666554443 23 2333444 56665544311111111
Q ss_pred HHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHH----HHHhcCC--------------C
Q 037537 337 FVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDAR----RLFDRMP--------------E 397 (677)
Q Consensus 337 ~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~----~~~~~~~--------------~ 397 (677)
. .-++...... .+.........++.|+ +.++..+...|-.-...+--. .....+. .
T Consensus 292 R-lplsvl~~eel~~~vdkyL~~~l~Kg~----p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 292 R-LPLSVLNGEELKEIVDKYLRPLLSKGV----PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred h-ccHHHhCcchhHHHHHHHHHHHhhcCC----CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0 0011111122 3334444444455555 455566666554432222111 1111111 2
Q ss_pred CCcchHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHH
Q 037537 398 HNTVSLNS--MIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHY 474 (677)
Q Consensus 398 ~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 474 (677)
|....|+. ++..|-..|+++.|+..++..++. .|+. .-|..=...+.+.|++++|..++++..+. -.||...-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~IN 442 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAIN 442 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHH
Confidence 34445554 567788999999999999999884 6774 35656667889999999999999999864 34666655
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHH--HHHHHhcCChHHHHHHHHHH
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVML--ANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l--~~~y~~~g~~~~a~~~~~~m 546 (677)
..-+.-..|+.+.++|.++......++...+ ..+-+++ -.|..+ +.+|.+.|+|.+|++=|...
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~----~~L~~mq----cmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAV----NNLAEMQ----CMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchh----hhHHHhh----hHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 5666777899999999999988765543222 1111111 123332 45577777777777655443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-06 Score=86.78 Aligned_cols=419 Identities=13% Similarity=0.114 Sum_probs=207.7
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-------------------------c
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-------------------------A 63 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------------~ 63 (677)
....|+++.|...++... .| +.....|..+..+....|++.-|.+.|..+-. .
T Consensus 454 aid~~df~ra~afles~~-~~-~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt 531 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLE-MG-PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGT 531 (1636)
T ss_pred ccccCchHHHHHHHHhhc-cC-ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCc
Confidence 345677888877666543 22 23334566665555555555555555443322 1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhh
Q 037537 64 NVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASS 142 (677)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 142 (677)
+.+-..+++..+ ..++.+|..+|-+- | .-..-|..|....+|++|+.+-+-. | .|.- ..-.+.+++..
T Consensus 532 ~fykvra~lail--~kkfk~ae~ifleq---n--~te~aigmy~~lhkwde~i~lae~~---~-~p~~eklk~sy~q~l~ 600 (1636)
T KOG3616|consen 532 DFYKVRAMLAIL--EKKFKEAEMIFLEQ---N--ATEEAIGMYQELHKWDEAIALAEAK---G-HPALEKLKRSYLQALM 600 (1636)
T ss_pred hHHHHHHHHHHH--HhhhhHHHHHHHhc---c--cHHHHHHHHHHHHhHHHHHHHHHhc---C-ChHHHHHHHHHHHHHH
Confidence 111222222222 23567777776331 1 1123455666667777777664422 1 1110 01112222222
Q ss_pred cchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeeeHHHHHHHHHhCCCchHHHHHH
Q 037537 143 NNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVSWNSMVVAYGQHREGLEALQLF 219 (677)
Q Consensus 143 ~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 219 (677)
..+. .+.+ +..+..-.-+.|..|.+.|.+..|.+.-..- ....|......+..++.+..-+++|=++|
T Consensus 601 dt~qd~ka~e---------lk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf 671 (1636)
T KOG3616|consen 601 DTGQDEKAAE---------LKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF 671 (1636)
T ss_pred hcCchhhhhh---------hccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 2222 1111 1111112235677888888887776554221 12334444555555666665666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhH-HHHHHHHHHcCCCHHHHHHHHhhCCCCCh
Q 037537 220 QEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIG-SGLIDLYAKCSGDMRDCMKVFEEIPQPDL 298 (677)
Q Consensus 220 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~~A~~~f~~~~~~~~ 298 (677)
+++.. | .-.+..+.+-.-+-+|.++-... ++..++.. ..--+-+...|+ ++.|..-|-+..
T Consensus 672 eki~d----~-----dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q-~daainhfiea~---- 733 (1636)
T KOG3616|consen 672 EKIHD----F-----DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEAN---- 733 (1636)
T ss_pred HHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhh----
Confidence 66543 1 11222222222233333332221 11111100 011112222234 455544443321
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
..-..|.+-... ..+.+|+.+++.+++... -.--|..+-..|++.+ .+.+.+++.. ...++--|+
T Consensus 734 -~~~kaieaai~a-kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e----------~~~~~dai~ 799 (1636)
T KOG3616|consen 734 -CLIKAIEAAIGA-KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE----------ADLFKDAID 799 (1636)
T ss_pred -hHHHHHHHHhhh-hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh----------cchhHHHHH
Confidence 011123334445 678888888888876543 2334666777788888 8877777644 445677889
Q ss_pred HHHccCCHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPEH--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
||.+.|++++|.++-.+...| .++.|-+-..-.-.+|++.+|.++|-... .|+. .|..|-+.|..+...
T Consensus 800 my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMI 870 (1636)
T ss_pred HHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHH
Confidence 999999999999998887655 34456666666777888888777764331 3432 234455555555555
Q ss_pred HHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 456 KYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
++.++- .|+ ..+-..+..-|-..|++..|++-|-+
T Consensus 871 rlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 871 RLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 544322 122 12223334444455555555554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-06 Score=84.06 Aligned_cols=454 Identities=11% Similarity=0.045 Sum_probs=239.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHh--hccccChhHHHHHHHHHHhcCC
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFN--QTQHANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~li~~~~~~g~ 80 (677)
..+++-+..+..+..|..+-+++...+..| ...--+.+++.-.|.++.|..+.. .+.+.|......+...+.+..+
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 456666777777888888888887776444 444446677777777777776654 3344788888888889999999
Q ss_pred hhHHHHHhccCCC---------CC--------cch----HHHHH-------HHHHhCCChhHHHHHHHHhHhcCCCCCcc
Q 037537 81 IASARQLFDQIPQ---------PD--------LVS----YNTLI-------SAYADCGDTESALSLFKDMREKRFDTDGF 132 (677)
Q Consensus 81 ~~~A~~~f~~m~~---------~~--------~~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 132 (677)
++.|..++..-.. .| ..- -+.-. ..|....+.++|...|.+... .|..
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~ 173 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAK 173 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchh
Confidence 9999999983221 11 111 01111 234445566777777766543 3444
Q ss_pred cHHHHHHHhhcchhhHHHHHHHHHHhCCC----CChhHHHHHHHHHHhcCChhHHHHHH--hhc-CCCCCeeeHHHHHHH
Q 037537 133 TLSGLITASSNNLCLIKQLHCLAIYCGFD----HYASVNNSLLTCYSRNGFLDEAKRVF--YEM-GEIKDEVSWNSMVVA 205 (677)
Q Consensus 133 t~~~ll~a~~~~~~~~~~i~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~f--~~m-~~~~~~~~~~~li~~ 205 (677)
.|..+..-....--.+.+.+..+....+. .+......+...+.-...-++....- +.+ +...++...-.-..-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 44333222111111111111111111100 01111111111110000000000000 001 122333334444556
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH
Q 037537 206 YGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD 285 (677)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~ 285 (677)
+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+....+|-++...|.-.|+ ..+
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k-~se 330 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK-YSE 330 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC-cHH
Confidence 677899999999999988753 355556666666778888877766666666665 36667788888888888888 999
Q ss_pred HHHHHhhCCCCC---hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcch-HHHHHHHhhccC-hhHHHHHHHHHH
Q 037537 286 CMKVFEEIPQPD---LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCS-FVCVISACSNLS-PSLGKQIHALTI 360 (677)
Q Consensus 286 A~~~f~~~~~~~---~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~~~i~~~~~ 360 (677)
|++.|.+...-| ...|-.....|+-. +..++|+..+...-+- -|...- +.-+---|...+ .+.+...+....
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999998865433 36899999999988 8889999888766542 111110 000111123333 444444433332
Q ss_pred HhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC------C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE------H----NTVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 361 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
++.|.++.+.+-+.-+.-+.+.+.+|...|+.... + -..+|+.|..+|.+.+++++|+..|++.+...
T Consensus 408 --ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 --AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred --hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 22233344444444444444455555554443321 0 11123444444445555555555555544432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHH
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHY 474 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 474 (677)
+-|..|+.++.-.+...|+++.|...|.+.. .+.|+..+-
T Consensus 486 -~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~ 525 (611)
T KOG1173|consen 486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFI 525 (611)
T ss_pred -CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHH
Confidence 3334444444444444555555555544443 344444333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-06 Score=88.65 Aligned_cols=479 Identities=13% Similarity=0.064 Sum_probs=259.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHhcc--CCCCCcchHHHHHHHHHhCCC
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLFDQ--IPQPDLVSYNTLISAYADCGD 111 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~--m~~~~~~~~~~li~~~~~~g~ 111 (677)
-+..+++-+..+.++..|.-+-+.+.. .|+...--+.++|.-.|+++.|..+... +.+.|..+.......+.+..+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444444444445555544444433 4555555677888888888888777653 556888888999999999999
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcC
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMG 191 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 191 (677)
+++|+.++.+-. +.-+.+.|-..-.++.-..+.+...+..-.++++ +-.--..|......++|+..|.+.
T Consensus 98 ~~~al~vl~~~~---~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~~Y~~A- 167 (611)
T KOG1173|consen 98 WDQALLVLGRGH---VETNPFSYYEKDAANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARDKYKEA- 167 (611)
T ss_pred HHHHHHHhcccc---hhhcchhhcchhhhceeccCcccccccccchhce------eeeeeehhhhhccHHHHHHHHHHH-
Confidence 999999987331 1112222210000100000001000000011110 000013345556678888888877
Q ss_pred CCCCeeeHHHHHHHHHhCC-CchHHHHHHHHHHHC-CCCCCHhHHHHHHHHH-ccCCChHHHHHHHHHHHHhCCCCchhh
Q 037537 192 EIKDEVSWNSMVVAYGQHR-EGLEALQLFQEMVSL-QLGLDMYTLASILTAF-TSLEDLVGGLQFHAHLIKSGFHQNSHI 268 (677)
Q Consensus 192 ~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~~~ 268 (677)
...|+..+.++...-...= -.++-+++|+...-. -.+-+....-.+.... ++..+.+ ....-.+..-.++..+..+
T Consensus 168 l~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 168 LLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENLDL 246 (611)
T ss_pred HhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcHHH
Confidence 6666666555443222111 111223333221000 0111222222222211 0000000 0000000111223445555
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhCCCC---ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhh
Q 037537 269 GSGLIDLYAKCSGDMRDCMKVFEEIPQP---DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACS 345 (677)
Q Consensus 269 ~~~li~~y~~~g~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 345 (677)
.....+-+...++ +.+..++++.+.+. +...+..-|..+... |+..+-+.+=.+|.+. .+-...+|-++---+-
T Consensus 247 l~~~ad~~y~~c~-f~~c~kit~~lle~dpfh~~~~~~~ia~l~el-~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCR-FKECLKITEELLEKDPFHLPCLPLHIACLYEL-GKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcCh-HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh-cccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 5556666666666 88888888777643 334455556666666 6666666666666653 2223455555544444
Q ss_pred ccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHH
Q 037537 346 NLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 346 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 421 (677)
..+ .+.++..+.... .+++.....|-.+...|+-.|.-|.|...+....+ .....+--+..-|.+.+..+.|.+
T Consensus 324 ~i~k~seARry~SKat--~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKAT--TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHh--hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 445 666666655443 23343355666777777777777776665543322 011111123334666677777777
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCcc----ChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 422 LFEWMLETNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMF-GFEP----EGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 422 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
.|.+... +-| |+..++-+.-...+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.|.+++++|...++
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 7777766 344 45566655555556777888888887766210 0111 23456667777778888888887777
Q ss_pred hCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 496 AMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 496 ~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+. +.+.|.++.+|.+++-+|...|+.+.|.+.|.+..
T Consensus 480 ~a---------------L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 480 KA---------------LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HH---------------HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55 68889999999999999999999999999999844
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-08 Score=94.07 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=139.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 55677888999999999999999998754 345678888999999999999999999999864 44567788888889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
...|++++|.+.++...+..........+..+...+.+.|++++|.+.+++. ++..|+++..+..
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~ 174 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA---------------LQIDPQRPESLLE 174 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcCChHHHHH
Confidence 9999999999999999875222234566777888999999999999999876 3566778889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037537 526 LANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++.+|...|++++|...+++..+.
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998775
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-06 Score=86.63 Aligned_cols=426 Identities=15% Similarity=0.143 Sum_probs=238.4
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCccc-HHHHH
Q 037537 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFT-LSGLI 138 (677)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 138 (677)
.|+.+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4778888888889999999999999988654 3456789999999999999999998887654432343333 33333
Q ss_pred HHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHH-HhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhC--------
Q 037537 139 TASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCY-SRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQH-------- 209 (677)
Q Consensus 139 ~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~-------- 209 (677)
+.|.+.....++..+++.+ .|+.| .+++.+. ...|-.+.-+|...
T Consensus 401 klc~e~l~~~eegldYA~k------------ai~~~~~~~~~l~--------------~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQK------------AISLLGGQRSHLK--------------PRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHhchhhhhhHHHHHHH------------HHHHhhhhhhhhh--------------hhHHHHHHHHHHhHhhcCCChH
Confidence 3344443333332222211 11111 1111111 11222222222211
Q ss_pred ---CCchHHHHHHHHHHHCC-CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH
Q 037537 210 ---REGLEALQLFQEMVSLQ-LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD 285 (677)
Q Consensus 210 ---g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~ 285 (677)
....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+..+.+-..+...|.-|.-.+...++ +.+
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr-~~~ 531 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR-LKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-hHH
Confidence 12345666666665543 234444343333 34556677777777777776555666666666555555555 777
Q ss_pred HHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 286 CMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 286 A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
|+.+.+...+ .|.+....-|.--..- ++.++++.+...+..- --+...+... ++ +.-..-.+.
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~-~~~e~~l~t~~~~L~~--we~~~~~q~~--------~~---~g~~~~lk~ 597 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTF-NDREEALDTCIHKLAL--WEAEYGVQQT--------LD---EGKLLRLKA 597 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhc-ccHHHHHHHHHHHHHH--HHhhhhHhhh--------hh---hhhhhhhhc
Confidence 7776665432 1111111111111113 5566666665555421 0000000000 00 000000000
Q ss_pred hc------ccCccchhHHH---HHHHHccCCHHHHHHHHhcCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 363 EI------RSNRISVNNAL---VAMYSKCGNLEDARRLFDRMPEHNT------VSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 363 ~~------~~~~~~~~~~l---i~~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
|+ ..+.+..+..+ +..-.+.-..+.....+...+.|+. ..|......+.+.+..++|...+.+..
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 00 00101122211 1111111112222222222233332 246667778888999999998888877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHH--HHHhCCCCCChH
Q 037537 428 ETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAER--LIEAMPFNPGSI 504 (677)
Q Consensus 428 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~ 504 (677)
... +-....|......+...|..++|.+.|.... -+.|+ +....++..++.+.|+..-|.. ++..+
T Consensus 678 ~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da------- 746 (799)
T KOG4162|consen 678 KID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA------- 746 (799)
T ss_pred hcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-------
Confidence 632 3334455555566678899999999998876 46775 6788899999999997666666 66655
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 505 ALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 505 ~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|.++..|.-|+..+-+.|+.++|.+.|+...+..
T Consensus 747 --------lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 747 --------LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred --------HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999876543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-05 Score=82.00 Aligned_cols=443 Identities=13% Similarity=0.117 Sum_probs=250.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHH--HHHHHH--hcCCh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNV--LLAAYA--RQLRI 81 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--li~~~~--~~g~~ 81 (677)
++-....+++++|.+....++..+ +.+...+.+-+-+..+.+.+++|..+...-... .+++. +=.+|+ +.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 445667789999999999999888 778888888888889999999999665543321 12222 234454 67999
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCC-CcccHHHHHHHhhcchhhHHHHHHHHHHhCC
Q 037537 82 ASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDT-DGFTLSGLITASSNNLCLIKQLHCLAIYCGF 160 (677)
Q Consensus 82 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~ 160 (677)
++|...++.....|..+-..=.+.+.+.|++++|+++|+.+.+.+..- |..--..++.+.... ..+ .+.....
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l---~~~---~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL---QVQ---LLQSVPE 169 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---hHH---HHHhccC
Confidence 999999996555555566666778889999999999999998765321 111112222211111 011 1222222
Q ss_pred CCC---hhHHHHHHHHHHhcCChhHHHHHHhhc---C----CCCCee----------eHHHHHHHHHhCCCchHHHHHHH
Q 037537 161 DHY---ASVNNSLLTCYSRNGFLDEAKRVFYEM---G----EIKDEV----------SWNSMVVAYGQHREGLEALQLFQ 220 (677)
Q Consensus 161 ~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m---~----~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~ 220 (677)
.|+ ..+||.- -.+...|++.+|+++++.. + ..-|.. .--.|.-.+-..|+.++|..+|.
T Consensus 170 v~e~syel~yN~A-c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VPEDSYELLYNTA-CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 221 2234432 3466778999999888765 0 000110 11223445567899999999998
Q ss_pred HHHHCCCCCCHh---HHHHHHHHHccCCChHHH--HHHHHHH-----------HHhCCCCchhhHHHHHHHHHHcCCCHH
Q 037537 221 EMVSLQLGLDMY---TLASILTAFTSLEDLVGG--LQFHAHL-----------IKSGFHQNSHIGSGLIDLYAKCSGDMR 284 (677)
Q Consensus 221 ~m~~~g~~pd~~---t~~~ll~a~~~~~~~~~a--~~~~~~~-----------~~~g~~~~~~~~~~li~~y~~~g~~~~ 284 (677)
..+.... +|.. ++..-|-+.....++-.+ .+.++.. ....-......-+.++.+|.. . .+
T Consensus 249 ~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k-~~ 324 (652)
T KOG2376|consen 249 DIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--K-MD 324 (652)
T ss_pred HHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-HH
Confidence 8887653 3432 222222333333322221 1111100 000001122223444555543 2 55
Q ss_pred HHHHHHhhCCCCC-hhhHHHHHhhhcccC-CCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 285 DCMKVFEEIPQPD-LVLWNTMISGYSQKE-EYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 285 ~A~~~f~~~~~~~-~~~~~~li~~~~~~~-~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
.++++-...+... ...+.+++....+.+ ....++.+++...-+. .|+..
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s--------------------------- 375 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKS--------------------------- 375 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchh---------------------------
Confidence 5555555555321 222333333322220 1233444444433322 22211
Q ss_pred hcccCccchhHHHHHHHHccCCHHHHHHHHh--------cCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC--C
Q 037537 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFD--------RMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET--N 430 (677)
Q Consensus 363 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~--------~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g 430 (677)
..+.-.++......|+++.|.+++. .+.+ .-+-+-.++...|.+.++.+.|..++++.+.. .
T Consensus 376 ------~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 376 ------KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 2344455566667788888888777 4433 23444555666677777777777777766541 1
Q ss_pred CCCCHHHHHHHHH----HHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 431 IPPTNITFVSVLS----ACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 431 ~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
-.+......+++. --.+.|.-++|..+++++.+. ..+|..+...+|.+|++. +.+.|..+-+.++..
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 1222333333333 234668999999999999873 457888899999998876 478888888877533
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-07 Score=101.57 Aligned_cols=244 Identities=12% Similarity=-0.015 Sum_probs=156.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH---------cCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCC
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK---------CSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~ 313 (677)
+++.|...+++.++.. +.+...+..+...|.. .++ .++|...+++..+ .+...|..+...+... |
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~-~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~-g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNA-MIKAKEHAIKATELDHNNPQALGLLGLINTIH-S 352 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-c
Confidence 4566777777666553 2223344444433321 123 5677777776543 3445666666666666 7
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
++++|...|++..+. .|+. ...+..+...|...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~----------------------------------~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPIS----------------------------------ADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888888777763 3443 5566777888888999999999999
Q ss_pred cCCC--CCc-chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 394 RMPE--HNT-VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 394 ~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
+..+ |+. ..+..++..+...|++++|+..+++..+.. +|+ ...+..+..++...|+.++|...+..+... .|
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~ 472 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EI 472 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cc
Confidence 8765 332 233344555777889999999999988754 454 444666667778899999999999887643 44
Q ss_pred C-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 470 E-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 470 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+ ....+.+...|.+.| ++|...++++... .+..|.++. .+...|+-.|+-+.+..+ +++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~------------~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLES------------EQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHH------------hhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhc
Confidence 4 334455666677777 4777777765311 112232222 266777888888887766 77776
Q ss_pred CC
Q 037537 549 RG 550 (677)
Q Consensus 549 ~g 550 (677)
.|
T Consensus 535 ~~ 536 (553)
T PRK12370 535 ED 536 (553)
T ss_pred cc
Confidence 55
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-07 Score=102.34 Aligned_cols=209 Identities=13% Similarity=0.081 Sum_probs=152.9
Q ss_pred HHHHHHHHhhCCC--CC-hhhHHHHHhhhc---------ccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChh
Q 037537 283 MRDCMKVFEEIPQ--PD-LVLWNTMISGYS---------QKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPS 350 (677)
Q Consensus 283 ~~~A~~~f~~~~~--~~-~~~~~~li~~~~---------~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 350 (677)
.++|...|++..+ |+ ...|..+...|. .. ++.++|...+++..+. .|+.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~-~~~~~A~~~~~~Al~l--dP~~---------------- 337 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQ-NAMIKAKEHAIKATEL--DHNN---------------- 337 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccc-hHHHHHHHHHHHHHhc--CCCC----------------
Confidence 6788888888764 33 334444433322 22 4567888888877763 4443
Q ss_pred HHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 351 LGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
..++..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..
T Consensus 338 ------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 338 ------------------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred ------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56667788888899999999999998765 3 34578889999999999999999999999
Q ss_pred HCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHH
Q 037537 428 ETNIPPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA 505 (677)
Q Consensus 428 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (677)
+. .|+. ..+..++..+...|++++|...++++.+. ..| +...+..+..+|...|+.++|.+.++++.
T Consensus 400 ~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~------- 468 (553)
T PRK12370 400 KL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIS------- 468 (553)
T ss_pred hc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh-------
Confidence 85 4553 33344455566789999999999998764 235 35557778888999999999999998863
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 506 LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 506 ~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...|.+...+..|...|...| ++|...++.+.+.
T Consensus 469 --------~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 469 --------TQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred --------hccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 233555666777778888877 5888877776553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-07 Score=95.66 Aligned_cols=203 Identities=17% Similarity=0.240 Sum_probs=149.7
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhc---CCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHH
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRV---GYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYS 380 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~ 380 (677)
+-..|... +++++|..+|+++... ..-++.... ..+++.|...|.
T Consensus 247 ~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h~~v-------------------------------a~~l~nLa~ly~ 294 (508)
T KOG1840|consen 247 LALVYRSL-GKYDEAVNLYEEALTIREEVFGEDHPAV-------------------------------AATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCCHHH-------------------------------HHHHHHHHHHHh
Confidence 44456666 8889999999888642 233444333 566788888999
Q ss_pred ccCCHHHHHHHHhcCCC----------CCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHH
Q 037537 381 KCGNLEDARRLFDRMPE----------HNTV-SLNSMIAGYAQHGIGMEALRLFEWMLET---NIPPT----NITFVSVL 442 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll 442 (677)
+.|++++|...+++..+ +.+. -.+.+...+...+++++|..+++...+. -..++ ..+++.+.
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 99999999888776542 2222 3667778889999999999999877652 12233 35789999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhc-----CCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc-c
Q 037537 443 SACAHTGKVAEGQKYFSMMKDMF-----GFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ-L 515 (677)
Q Consensus 443 ~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~-l 515 (677)
..+.+.|++++|.++|+++.+.. +..+. ..+++.|...|.+.+..++|.++|.+.. .+. +.+. -
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~--------~i~-~~~g~~ 445 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK--------DIM-KLCGPD 445 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH--------HHH-HHhCCC
Confidence 99999999999999999988652 11222 4567888899999999999999998762 111 2222 2
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 516 EPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 516 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
.|+-..+|..|+.+|.+.|++++|.++.....
T Consensus 446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 446 HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34556789999999999999999999988765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00011 Score=79.10 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
+..|..+..+-.+.|...+|++-|-+ ..|+..|.-++..+++.|.+++-.+++...+++ .-+|.++ +.||-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 45699999999999999999887754 246778999999999999999999999998887 6666554 67899
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHH-HHHHHHHhc--------cCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIA-LKAANHFLQ--------LEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~--------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+|++.+++.|-++++..- +..- ..+..+.++ +--.+.+.|..|...+...|.+..|...-++.
T Consensus 1175 AyAkt~rl~elE~fi~gp----N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGP----NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHhchHHHHHHHhcCC----CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999887532 2211 222222221 11135677889999999999999887665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=98.51 Aligned_cols=228 Identities=17% Similarity=0.215 Sum_probs=160.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCChh-hHHHHHHHHHccCChHHHHHHHhhccc--------cCh--
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKN-----L-VPFSAY-LSNHFILLYSKCGCLSAAHHAFNQTQH--------ANV-- 65 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~-- 65 (677)
.-|...|...|+++.|..++.+.++. | ..|... ..+.+..+|...+++.+|..+|+.+.. .++
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 34667888899999999988888876 1 122222 233466778888889999888888776 222
Q ss_pred -hHHHHHHHHHHhcCChhHHHHHhccCCC----------CCcc-hHHHHHHHHHhCCChhHHHHHHHHhHhc---CCCCC
Q 037537 66 -FSFNVLLAAYARQLRIASARQLFDQIPQ----------PDLV-SYNTLISAYADCGDTESALSLFKDMREK---RFDTD 130 (677)
Q Consensus 66 -~~~~~li~~~~~~g~~~~A~~~f~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 130 (677)
.+++.|-.+|.+.|++++|...++...+ |.+. ..+.+...+...+++++|..+++...+. -..++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 3456666678888888888777766432 2332 2566777788888888888888765532 01111
Q ss_pred cccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-------CC--CC-CeeeHH
Q 037537 131 GFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-------GE--IK-DEVSWN 200 (677)
Q Consensus 131 ~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-------~~--~~-~~~~~~ 200 (677)
.. .-..+++.|-..|.+.|++++|+++|++. .. .+ .....|
T Consensus 363 ~~-----------------------------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 363 NV-----------------------------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred ch-----------------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 10 11346788999999999999999999987 11 11 234578
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC----CC-CCC-HhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 201 SMVVAYGQHREGLEALQLFQEMVSL----QL-GLD-MYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 201 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
.|...|.+.+++.+|.++|.+-... |. .|+ ..+|..|...|...|+++.|.++...+..
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8889999999999999999776432 21 123 46788888889999999999988887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=88.36 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhh
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACS 345 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 345 (677)
--+-+...|.+.|. ..+|++-|+.-. .|-+.||-.|-..|.+. ++++.|+.+|.+-.+ ..|-.+||.
T Consensus 225 Wk~Q~gkCylrLgm-~r~AekqlqssL~q~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld--~fP~~VT~l------- 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGM-PRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI-DQPERALLVIGEGLD--SFPFDVTYL------- 293 (478)
T ss_pred HHHHHHHHHHHhcC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhh--cCCchhhhh-------
Confidence 34567788888888 999999888765 37777888888999999 999999999988776 467777763
Q ss_pred ccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHH
Q 037537 346 NLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRL 422 (677)
Q Consensus 346 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 422 (677)
.-....+-..++.++|.++++...+ .|+.+...+..+|.-.++++-|+..
T Consensus 294 ---------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 294 ---------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred ---------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 2334445566888999999998765 3556666777889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 423 FEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 423 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
|+++++.|+ -++.-|+.+.-.|...+.+|-++.-|+..... .-.|+ ..+|-.+.....-.|++.-|.+-|+-.
T Consensus 347 YRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla--- 421 (478)
T KOG1129|consen 347 YRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA--- 421 (478)
T ss_pred HHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHH---
Confidence 999999994 46678888888999999999999999988865 44454 467777888888889999999888765
Q ss_pred CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 501 PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 501 ~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
+.-+|++..+++.|.-.-.+.|+.++|..+++..+...
T Consensus 422 ------------L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 422 ------------LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ------------hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 35567888999999999999999999999999877643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-05 Score=82.49 Aligned_cols=432 Identities=12% Similarity=0.101 Sum_probs=266.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChh
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (677)
..|..-+.++++++.....++..++.| ..++.++|+|.+.|....+-.+ ...+.|++--+..+.-||..+++.
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE------~fLkeN~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE------RFLKENPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH------HhcccCCcchhhHHhhhhcccCCc
Confidence 346667777788888888888888888 5688888988888877665432 222344444456667777777776
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhCCChhH-HHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCC
Q 037537 83 SARQLFDQIPQPDLVSYNTLISAYADCGDTES-ALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFD 161 (677)
Q Consensus 83 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~ 161 (677)
.|.-.+++-.- | ..||..+-.+..+.. |.-+.+ ..|...|..+|.- ....-+++.+.++..+++
T Consensus 915 lA~vaYerGqc-D----~elI~vcNeNSlfK~~aRYlv~-------R~D~~LW~~VL~e---~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 915 LACVAYERGQC-D----LELINVCNENSLFKSQARYLVE-------RSDPDLWAKVLNE---ENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred eEEEeecccCC-c----HHHHHhcCchhHHHHHHHHHHh-------ccChHHHHHHHhc---cChHHHHHHHHHHHhcCC
Confidence 66555544322 1 112222222221111 111111 1233334433321 111456777777777763
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeee-----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 162 --HYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVS-----WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 162 --~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
.|+.-.+..+.++...+-..+-.++++++-..+++++ -|.||-...+ -+....++..+++-.-.. |+
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~---- 1053 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD---- 1053 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh----
Confidence 4666677788888889999999999998833444443 3344433333 345566666666543221 22
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
+...+...+-+++|..+|... ..+....+.|+.--. . ++.|.+.-++..+|. .|+.+..+-.+. |.
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i~---~-ldRA~efAe~~n~p~--vWsqlakAQL~~-~~ 1119 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENIG---S-LDRAYEFAERCNEPA--VWSQLAKAQLQG-GL 1119 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHhh---h-HHHHHHHHHhhCChH--HHHHHHHHHHhc-Cc
Confidence 223344455567777776543 444555555554433 3 777777777766554 588888888888 88
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 315 SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
..+|++-|-+. -|...|..++..+++.+ .+.-...+....+..-+|. +-+.||-+|+|.+++.+-++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~---id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY---IDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---chHHHHHHHHHhchHHHHHHHhc
Confidence 88888777442 35567888888888888 7766666666665554444 55788888888888887776654
Q ss_pred cCCC-----------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 394 RMPE-----------------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 394 ~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
.-.. .++.-|..|...+...|++..|...-++. .+..||-.+-.+|...+.
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 2211 23445667777777777777776654432 345688888888887776
Q ss_pred HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 451 VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+.-|. |... ++....+-..-++..|-..|.++|-..+++..
T Consensus 1265 FrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1265 FRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 64432 2211 23334555677888899999999988888754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-05 Score=75.41 Aligned_cols=357 Identities=14% Similarity=0.063 Sum_probs=188.5
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchH-HHHHHHHHhCC-C-hhH-------------HHHHHHHhHhcC-
Q 037537 64 NVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSY-NTLISAYADCG-D-TES-------------ALSLFKDMREKR- 126 (677)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~g-~-~~~-------------A~~~~~~m~~~g- 126 (677)
+...-...+..|...++-+.|.....+.+..-...- |.|+.-+.+.| + .++ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 444556678888889999999999988876433333 33433333332 1 121 222222222222
Q ss_pred --------------CCCCcccHHHHHHHhhcchh----hHHHHHHH-HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037537 127 --------------FDTDGFTLSGLITASSNNLC----LIKQLHCL-AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVF 187 (677)
Q Consensus 127 --------------~~p~~~t~~~ll~a~~~~~~----~~~~i~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 187 (677)
+.|+..+.+.-+.+++..-. .+-+.+.. -...-++.|+....++.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 22333333333444332211 22222222 233446777888888888888888888888888
Q ss_pred hhc-CCCCCeee-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc
Q 037537 188 YEM-GEIKDEVS-WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN 265 (677)
Q Consensus 188 ~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 265 (677)
++. ...|+.++ .....-.+.+.|++++...+...+.... +-....|..-.+.....++++.|..+-+..++.. +.+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 887 23332221 2222233456777777777766665421 1122223333333445567777777766666543 223
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCC--C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH-
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIP--Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI- 341 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll- 341 (677)
+..+-.-...+...++ .++|.-.|+... . -+..+|.-|+..|... |...+|+-+-+...+. +..+..+.+ ++
T Consensus 334 ~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~-~~~kEA~~~An~~~~~-~~~sA~~Lt-L~g 409 (564)
T KOG1174|consen 334 HEALILKGRLLIALER-HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ-KRFKEANALANWTIRL-FQNSARSLT-LFG 409 (564)
T ss_pred chHHHhccHHHHhccc-hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh-chHHHHHHHHHHHHHH-hhcchhhhh-hhc
Confidence 3333333345555566 888888887654 2 4677888888888888 8888887766554432 122222222 22
Q ss_pred -HHhhccC--hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCh
Q 037537 342 -SACSNLS--PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIG 416 (677)
Q Consensus 342 -~a~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 416 (677)
..|.... -+.++.+.+..++ +.|+.+...+.+...+...|..+++..++++... +|.+..+.|...+...+.+
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 1222221 3444444433332 2233334444555555555555555555554432 4555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 037537 417 MEALRLFEWMLE 428 (677)
Q Consensus 417 ~~A~~l~~~m~~ 428 (677)
.+|++.|...+.
T Consensus 488 Q~am~~y~~ALr 499 (564)
T KOG1174|consen 488 QKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-05 Score=82.03 Aligned_cols=421 Identities=14% Similarity=0.161 Sum_probs=237.7
Q ss_pred HHHHHHHccCChHHHHHHHhhccccChh--HHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHH
Q 037537 39 HFILLYSKCGCLSAAHHAFNQTQHANVF--SFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESAL 116 (677)
Q Consensus 39 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 116 (677)
..+.+......+.+|..+.+.+...++. -|..+.+.|+..|+++.|.++|-+. ..++--|..|.++|+|++|.
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 3445555667777777777777663333 2556666777777777777777553 23555677777777777777
Q ss_pred HHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCe
Q 037537 117 SLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDE 196 (677)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 196 (677)
++-.+... |... ...|-+-..-.-+.|++.+|++++-.+ ..|+.
T Consensus 812 kla~e~~~----~e~t-------------------------------~~~yiakaedldehgkf~eaeqlyiti-~~p~~ 855 (1636)
T KOG3616|consen 812 KLAEECHG----PEAT-------------------------------ISLYIAKAEDLDEHGKFAEAEQLYITI-GEPDK 855 (1636)
T ss_pred HHHHHhcC----chhH-------------------------------HHHHHHhHHhHHhhcchhhhhheeEEc-cCchH
Confidence 77655431 2111 111122223344567777777777666 45543
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 037537 197 VSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLY 276 (677)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 276 (677)
-|..|-+.|..++.+++..+-....+ ..|-..+..-+-..|++..|+.-|-..- -|.+-++||
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmy 918 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMY 918 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHh
Confidence 45666777777777766655432111 2333444455556677777665543322 356677888
Q ss_pred HHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHH--hhcCCCCCcchHHHHHHHhhccC-hhHHH
Q 037537 277 AKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKL--NRVGYHPDDCSFVCVISACSNLS-PSLGK 353 (677)
Q Consensus 277 ~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m--~~~g~~p~~~t~~~ll~a~~~~~-~~~~~ 353 (677)
-..+. +++|.++-+.-.-.|..-.-..+-+-.-. | +.|.+++++. ...+ +.-.+..+ .+.+.
T Consensus 919 k~s~l-w~dayriaktegg~n~~k~v~flwaksig-g--daavkllnk~gll~~~-----------id~a~d~~afd~af 983 (1636)
T KOG3616|consen 919 KASEL-WEDAYRIAKTEGGANAEKHVAFLWAKSIG-G--DAAVKLLNKHGLLEAA-----------IDFAADNCAFDFAF 983 (1636)
T ss_pred hhhhh-HHHHHHHHhccccccHHHHHHHHHHHhhC-c--HHHHHHHHhhhhHHHH-----------hhhhhcccchhhHH
Confidence 88777 88888876654433332222222222211 2 5566666542 2211 11122223 55555
Q ss_pred HHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCc--chHHHHH-----HHHHHcC-ChHHHHHHHHH
Q 037537 354 QIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNT--VSLNSMI-----AGYAQHG-IGMEALRLFEW 425 (677)
Q Consensus 354 ~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--~~~~~li-----~~~~~~g-~~~~A~~l~~~ 425 (677)
.+.....+... ..+.-.+.-.+-..|++++|-+-+-+..+-|. +||..-+ .-+.+.| ++++|.++|-.
T Consensus 984 dlari~~k~k~----~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~ 1059 (1636)
T KOG3616|consen 984 DLARIAAKDKM----GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIH 1059 (1636)
T ss_pred HHHHHhhhccC----ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhh
Confidence 55444444333 33444555566788999999988887766443 4554332 2345556 67777777632
Q ss_pred H--------HHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 426 M--------LETNIPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 426 m--------~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
= +....-||. ..|+.-.......|++-+|..++-+. -+|+.. ++-|..++.|.+|+++-+
T Consensus 1060 dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra-----nkp~i~-----l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1060 DNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA-----NKPDIA-----LNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred cccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec-----CCCchH-----HHHHHHhccChHHHHHHH
Confidence 1 011122332 23334444445566766666655333 356653 456777889999999887
Q ss_pred hC-CCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 496 AM-PFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 496 ~m-~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
.. |.+...+.++--+..++....-...++.-..-.-++|+|..|...+-+.
T Consensus 1130 dylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1130 DYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred hhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 65 2222222244444455555556667888788888899999888877665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-05 Score=72.86 Aligned_cols=358 Identities=13% Similarity=0.031 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhcCCCC-CeeeHHHHHHHHHhCC-CchH--------------HHHHHHHHHHCC-
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEMGEIK-DEVSWNSMVVAYGQHR-EGLE--------------ALQLFQEMVSLQ- 226 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~~li~~~~~~g-~~~~--------------A~~~~~~m~~~g- 226 (677)
...-.-.+..|...++-+.|.....+. +.. ...--|.|+.-+-+.| +..+ |++.+.-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~-p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQV-PPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcC-CccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 334445666777778888888887777 332 2223344443333332 1111 112222222222
Q ss_pred --------------CCCCHhHHHHHHHHH--ccCCChHHHHHHHHHHHH-hCCCCchhhHHHHHHHHHHcCCCHHHHHHH
Q 037537 227 --------------LGLDMYTLASILTAF--TSLEDLVGGLQFHAHLIK-SGFHQNSHIGSGLIDLYAKCSGDMRDCMKV 289 (677)
Q Consensus 227 --------------~~pd~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~~A~~~ 289 (677)
+.|+..+...-+.++ +..++-..+.+.+-.+.+ .-++.|+....++.+.|...|+ .++|...
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd-n~~a~~~ 254 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD-YFQAEDI 254 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC-chHHHHH
Confidence 223333333334433 233444444444444433 3467888899999999999999 9999999
Q ss_pred HhhCCCCChhhHHHH---HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC---hhHHHHHHHHHHHhh
Q 037537 290 FEEIPQPDLVLWNTM---ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS---PSLGKQIHALTIKIE 363 (677)
Q Consensus 290 f~~~~~~~~~~~~~l---i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~~~i~~~~~~~~ 363 (677)
|++...-|..+..+| .--+.+. |+.+....+...+....-..-.. .+..+|.... .+.+..+-+..++
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL~~e-g~~e~~~~L~~~Lf~~~~~ta~~---wfV~~~~l~~~K~~~rAL~~~eK~I~-- 328 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLLGQE-GGCEQDSALMDYLFAKVKYTASH---WFVHAQLLYDEKKFERALNFVEKCID-- 328 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHHHhc-cCHhhHHHHHHHHHhhhhcchhh---hhhhhhhhhhhhhHHHHHHHHHHHhc--
Confidence 998765443332222 1122344 77777766666665432111111 1222222222 3333333333332
Q ss_pred cccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037537 364 IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVS 440 (677)
Q Consensus 364 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 440 (677)
.++..+..+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|++.+|.-+-++..+. ++.+..++..
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 2333344444444667778999999999987653 47889999999999999999999988876653 3455566655
Q ss_pred HH-HHHh-ccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 441 VL-SACA-HTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 441 ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
+- ..|. ....-++|..++++.. .+.|+ ....+.+..++.+.|..+++..++++.. ...|
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---------------~~~~ 469 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---------------IIFP 469 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---------------hhcc
Confidence 52 3343 2334578999988876 45776 5567788889999999999999998763 2222
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
|...++.|.+.+...+.+.+|++.|......
T Consensus 470 -D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 470 -DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred -ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5577999999999999999999999886553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00029 Score=74.44 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=175.6
Q ss_pred HHHHHccCChHHHHHHHhhccc--cC-hhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHH-HHHHHHHh-----C
Q 037537 41 ILLYSKCGCLSAAHHAFNQTQH--AN-VFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYN-TLISAYAD-----C 109 (677)
Q Consensus 41 l~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~-~li~~~~~-----~ 109 (677)
...+...|++++|.+.+..... .| ..........|.+.|+.++|..++..+.+ |+-..|- .+..+... .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3445566777777777765444 33 33455566667777777777777777665 4433333 33333311 1
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh----hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHH
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC----LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKR 185 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 185 (677)
.+.+...++|+++.+.- |.......+.-.+.. |+ .+.......++.|++ .+++.|-..|......+-..+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24566667777665542 433333222111111 22 334444444555543 355666666665555555555
Q ss_pred HHhhc-------C----------CCCCeeeH--HHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCC
Q 037537 186 VFYEM-------G----------EIKDEVSW--NSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLE 245 (677)
Q Consensus 186 ~f~~m-------~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 245 (677)
++... + ..|+...| .-+...|-..|++++|+++.++.++. .|+ ...|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 55443 0 12333334 55577788999999999999999885 465 567788888899999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChh----------hH--HHHHhhhcccCC
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLV----------LW--NTMISGYSQKEE 313 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~----------~~--~~li~~~~~~~~ 313 (677)
++.+|....+...+.. ..|..+-+-.+..+.++|. +++|.+++.....++.. .| .....+|.+. |
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~-~ 319 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ-G 319 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-h
Confidence 9999999999998876 4677888888889999999 99999998887654421 23 2345678888 9
Q ss_pred CHHHHHHHHHHHhh
Q 037537 314 YSDQALGCFKKLNR 327 (677)
Q Consensus 314 ~~~~A~~l~~~m~~ 327 (677)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99988887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-05 Score=78.50 Aligned_cols=437 Identities=13% Similarity=0.054 Sum_probs=232.5
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHH
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASAR 85 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 85 (677)
|-..+.+..++.+.+.+++ ..+....+.....-.+...|+.++|........+ .+.+.|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 4456778888888888888 4455566665554455678899999988887777 45567888877777788999999
Q ss_pred HHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhhcchh--hHHHHHHHHHHhC
Q 037537 86 QLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASSNNLC--LIKQLHCLAIYCG 159 (677)
Q Consensus 86 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~--~~~~i~~~~~~~g 159 (677)
+.|..... .|...|.-+--.-++.|+++.....-.+..+. .|.. ..|..+.-+.--.++ .+..+.+...+.-
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99987653 45667776666666777888877777666653 2322 223222222222222 3333333333322
Q ss_pred -CCCChhHHHHHH------HHHHhcCChhHHHHHHhhcCCCCCe---ee-HHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 037537 160 -FDHYASVNNSLL------TCYSRNGFLDEAKRVFYEMGEIKDE---VS-WNSMVVAYGQHREGLEALQLFQEMVSLQLG 228 (677)
Q Consensus 160 -~~~~~~~~~~li------~~~~~~g~~~~A~~~f~~m~~~~~~---~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 228 (677)
-.|+...+.... ....+.|.+++|.+-+..- ++.+ +. -..-...+.+.+++++|..++..++...
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~--e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN--EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh--hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 123322222111 1122334444444433332 1111 11 1122233344444444444444444421
Q ss_pred CCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHH-HHHhhCCC-------CChhh
Q 037537 229 LDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCM-KVFEEIPQ-------PDLVL 300 (677)
Q Consensus 229 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~-~~f~~~~~-------~~~~~ 300 (677)
||...|...+ ..++++..+ .-++. .+|....+ |-...
T Consensus 250 Pdn~~Yy~~l----------------------------------~~~lgk~~d-~~~~lk~ly~~ls~~y~r~e~p~Rlp 294 (700)
T KOG1156|consen 250 PDNLDYYEGL----------------------------------EKALGKIKD-MLEALKALYAILSEKYPRHECPRRLP 294 (700)
T ss_pred chhHHHHHHH----------------------------------HHHHHHHhh-hHHHHHHHHHHHhhcCcccccchhcc
Confidence 3433333322 223322222 22222 34433321 11111
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHH----HHHHHhh---------ccc
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIH----ALTIKIE---------IRS 366 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~----~~~~~~~---------~~~ 366 (677)
.+.+. + . .-.+..-.++..+.+.|+.+--.++.++.. ... .+..+++. ..+...| .++
T Consensus 295 lsvl~-~---e-el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 295 LSVLN-G---E-ELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred HHHhC-c---c-hhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 11111 1 1 222333445555566665443222222221 111 11011110 0000000 112
Q ss_pred Cccch--hHHHHHHHHccCCHHHHHHHHhcCCCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 367 NRISV--NNALVAMYSKCGNLEDARRLFDRMPEHNTVS---LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 367 ~~~~~--~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
..+.+ +--++.-|-+.|+++.|...++......+.. |-.=.+.+...|+.++|..++++..+.. .||...=.--
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKc 445 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKC 445 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHH
Confidence 21223 3456778889999999999999987744433 3344577888999999999999999876 5665443345
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCc--cChHHHHHH------HHHHhhcCChHHHHHHHHhC
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFE--PEGEHYSCM------IDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~l------i~~~~~~g~~~~A~~~~~~m 497 (677)
..-..+++..++|..+.....+. |.. -+..-..|| ..+|.|.|++.+|++=|..+
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 55566889999999999888776 541 111111122 35688999999898877655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-05 Score=84.96 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLL 481 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 481 (677)
.-+...|-..|++++|++..++.++. .|+ ...|..-...+-+.|++++|.+.++..++. .+ |...-+-.+..+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---D~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---DLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---ChhhHHHHHHHHHHH
Confidence 44566788999999999999999995 577 567888888899999999999999999864 33 566666778888
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.|+|++++|.+++......+.... ..+.++. -.....--+.+|.+.|++..|++-|....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~----~~L~~mQ--c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPL----SNLNDMQ--CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcc----cCHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999987754321100 0011110 011223557889999999999887766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-05 Score=73.08 Aligned_cols=445 Identities=14% Similarity=0.108 Sum_probs=234.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCCh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNH-FILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRI 81 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 81 (677)
+.-+...+++..|+.+++.-...+-.. ....+. +...+-+.|++++|...+..+.. ++...+-.|.-.+--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 344566788888888888777554222 222333 34455678999999988887766 5556666666666667888
Q ss_pred hHHHHHhccCCCCCcchHH-HHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-hHHHHHHHHHHhC
Q 037537 82 ASARQLFDQIPQPDLVSYN-TLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-LIKQLHCLAIYCG 159 (677)
Q Consensus 82 ~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~~i~~~~~~~g 159 (677)
.+|..+-...++ ....+ .|...--+.++-++-..+-+.+... .-|..+..++= +.+..- .+-.++..++...
T Consensus 108 ~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsvh--YmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASVH--YMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 888887665543 22222 3333344455555444444443321 01111111110 001111 3333333333321
Q ss_pred CCCChhHHHH-HHHHHHhcCChhHHHHHHhhc-CCCCC-eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 160 FDHYASVNNS-LLTCYSRNGFLDEAKRVFYEM-GEIKD-EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 160 ~~~~~~~~~~-li~~~~~~g~~~~A~~~f~~m-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
|+-...|. +.-.|.+..-++-+.++++-- ...|| .+.-|.......+.=.-.-|.+-..++...+-. .+.+..
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~~f~~ 257 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ--EYPFIE 257 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--cchhHH
Confidence 11111122 223566777777777666554 23343 444555554444432333344444444443211 111111
Q ss_pred -HHH-HHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHH-------HHHhh
Q 037537 237 -ILT-AFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWN-------TMISG 307 (677)
Q Consensus 237 -ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~-------~li~~ 307 (677)
+++ -+.--.+-+.|.+++--+.+. .| ...-.|+-.|.+.++ +++|..+..++...+..-|- ++-.-
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~d-VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQND-VQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hhhhhheeeeccccc-HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 111 112224456777776655543 22 233345666778788 99999999888643332221 11111
Q ss_pred hcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCH
Q 037537 308 YSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNL 385 (677)
Q Consensus 308 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 385 (677)
.... ....-|.+.|.-.-+++..-|.+.=..-+.+|--+. .+...-.. ..++.-+..| ....-.+..+++..|+.
T Consensus 333 ~gSr-eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl-nSi~sYF~Nd-D~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 333 TGSR-EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL-NSIESYFTND-DDFNLNLAQAKLATGNY 409 (557)
T ss_pred cCcH-HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCc-chhhhHHHHHHHHhcCh
Confidence 1111 234456666655545554444322211111211111 22222222 1233334444 23334578899999999
Q ss_pred HHHHHHHhcCCC---CCcchHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHH
Q 037537 386 EDARRLFDRMPE---HNTVSLNSM-IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV-LSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 386 ~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~ 460 (677)
.+|+++|-++.. +|-.+|-++ .++|.+++.++.|.+++-.+ +-+.+..++..+ .+-|.+.+.+--|-+.|+.
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999988876 456677654 57889999999987766554 323445554444 4568889988888888888
Q ss_pred hHHhcCCccChHHHH
Q 037537 461 MKDMFGFEPEGEHYS 475 (677)
Q Consensus 461 m~~~~~~~p~~~~~~ 475 (677)
+.. ..|+++.|.
T Consensus 487 lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 487 LEI---LDPTPENWE 498 (557)
T ss_pred HHc---cCCCccccC
Confidence 864 578887763
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=87.12 Aligned_cols=220 Identities=14% Similarity=0.134 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHhhcC-CCCCc--chHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHH
Q 037537 313 EYSDQALGCFKKLNRVG-YHPDD--CSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDA 388 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 388 (677)
+..+.++.-+.++.... ..|+. ..|...-..+...| .+.+...+...++. .|+.+.+++.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55577777777777532 22322 22333333445556 66666666655553 455577888888888888888888
Q ss_pred HHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037537 389 RRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 389 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 465 (677)
...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888887754 3 3457777888888888888888888888874 454332222222234567788888888665542
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
..|+...+ .++..+ .|++.++ +.++.+... .+...++.|+...+|..|+.+|.+.|++++|...|++
T Consensus 195 -~~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~--------~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 195 -LDKEQWGW-NIVEFY--LGKISEE-TLMERLKAG--------ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred -CCccccHH-HHHHHH--ccCCCHH-HHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33333222 233332 4444333 233222100 0011245566778999999999999999999999999
Q ss_pred HHhCC
Q 037537 546 MRDRG 550 (677)
Q Consensus 546 m~~~g 550 (677)
..+.+
T Consensus 262 Al~~~ 266 (296)
T PRK11189 262 ALANN 266 (296)
T ss_pred HHHhC
Confidence 88755
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-07 Score=87.89 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=115.5
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVA 452 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~ 452 (677)
.+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 4567789999999888776 44555666788999999999999999999874 344 445555555432 34689
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
+|..+|+++.+. ..+++.+.+.+.-+....|++++|.+++++. ++.+|.++.+...++-....
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a---------------l~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA---------------LEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH---------------CCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HHhccCCHHHHHHHHHHHHH
Confidence 999999999875 4578888999999999999999999998875 36678888899999999999
Q ss_pred cCCh-HHHHHHHHHHHhC
Q 037537 533 SGKW-EEVATIRRLMRDR 549 (677)
Q Consensus 533 ~g~~-~~a~~~~~~m~~~ 549 (677)
.|+. +.+.+++.+++..
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 9988 6677888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00032 Score=74.18 Aligned_cols=316 Identities=14% Similarity=0.126 Sum_probs=158.0
Q ss_pred HHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhCCChhHHHHHHH
Q 037537 42 LLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQ-PDLVSYNTLISAYADCGDTESALSLFK 120 (677)
Q Consensus 42 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 120 (677)
-.....|.+++|+.++++-.+ |..|-..|-..|.+++|.++-+.-.+ .=..||-.-...+-..++.+.|++.|+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 334567888888888887765 33344566677888888877654322 112344445555555667777777666
Q ss_pred H----------hHhcCCCCCcccHHHHHHHhhcchh-hHHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhcCChh
Q 037537 121 D----------MREKRFDTDGFTLSGLITASSNNLC-LIKQLHCLAIYCGFDH--------YASVNNSLLTCYSRNGFLD 181 (677)
Q Consensus 121 ~----------m~~~g~~p~~~t~~~ll~a~~~~~~-~~~~i~~~~~~~g~~~--------~~~~~~~li~~~~~~g~~~ 181 (677)
+ |+... .|...-|. +- ..+ ..-.-|..-+++--+. ...-|-++++..+-.|+.+
T Consensus 883 K~~~hafev~rmL~e~-p~~~e~Yv---~~---~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEY-PKQIEQYV---RR---KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred hcCChHHHHHHHHHhC-hHHHHHHH---Hh---ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 4 22221 11111110 00 000 0001111111110011 1112234555555567777
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhC
Q 037537 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSG 261 (677)
Q Consensus 182 ~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 261 (677)
+|-++-++- .|......|.+.|-..|++.+|+..|.+.+ +|...|+.|-..+--+. +.....-.|
T Consensus 956 kAa~iA~es---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~---L~nlal~s~ 1020 (1416)
T KOG3617|consen 956 KAARIAEES---GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR---LANLALMSG 1020 (1416)
T ss_pred HHHHHHHhc---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH---HHHHHhhcC
Confidence 777776665 566677778888888888888888887764 45666665544332221 111111111
Q ss_pred CCCchh-----------hHHHHHHHHHHcCCCHHHHHHHHhhCC--------------CCChhhHHHHHhhhcccCCCHH
Q 037537 262 FHQNSH-----------IGSGLIDLYAKCSGDMRDCMKVFEEIP--------------QPDLVLWNTMISGYSQKEEYSD 316 (677)
Q Consensus 262 ~~~~~~-----------~~~~li~~y~~~g~~~~~A~~~f~~~~--------------~~~~~~~~~li~~~~~~~~~~~ 316 (677)
..|.. -..--+-.|-|.|. +.+|.++-=+-. ..|....+---.-++.+ .+++
T Consensus 1021 -~~d~v~aArYyEe~g~~~~~AVmLYHkAGm-~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~-~qye 1097 (1416)
T KOG3617|consen 1021 -GSDLVSAARYYEELGGYAHKAVMLYHKAGM-IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN-QQYE 1097 (1416)
T ss_pred -chhHHHHHHHHHHcchhhhHHHHHHHhhcc-hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH-HHHH
Confidence 00100 01112233444444 554444311111 12334444444555666 6777
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhh-cccC---ccchhHHHHHHHHccCCHHHHHHHH
Q 037537 317 QALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIE-IRSN---RISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 317 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~-~~~~---~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
+|..++-...+ |...+..|...+.....++-+.+.-.. -.++ ...+...+.+.+.+.|.+..|-+-|
T Consensus 1098 kAV~lL~~ar~---------~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1098 KAVNLLCLARE---------FSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHHH---------HHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 78777765543 455566666655444444444433211 1111 1345566677777778777777766
Q ss_pred hcCC
Q 037537 393 DRMP 396 (677)
Q Consensus 393 ~~~~ 396 (677)
.+.-
T Consensus 1169 TQAG 1172 (1416)
T KOG3617|consen 1169 TQAG 1172 (1416)
T ss_pred hhhh
Confidence 5543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00014 Score=76.67 Aligned_cols=440 Identities=14% Similarity=0.097 Sum_probs=243.1
Q ss_pred HHhcCCChHHHHHH----HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC
Q 037537 8 TCVGRRDLVTGKSL----HALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 8 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 80 (677)
.++.+.+.+++... +.++....++.++.+|..|.=+...+|++..+.+.|++... .....|+.+-..|+-+|.
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 44455566666533 33333344678899999999999999999999999998887 566789999999999999
Q ss_pred hhHHHHHhccCCC----CCcchHHHHHH-HHH-hCCChhHHHHHHHHhHhc--C----CCCCcccHHHHHHHhh---cch
Q 037537 81 IASARQLFDQIPQ----PDLVSYNTLIS-AYA-DCGDTESALSLFKDMREK--R----FDTDGFTLSGLITASS---NNL 145 (677)
Q Consensus 81 ~~~A~~~f~~m~~----~~~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~--g----~~p~~~t~~~ll~a~~---~~~ 145 (677)
-..|..+.+.-.. |+..+--.|+. .|. +.+.+++++++-.+.... | +.|-..-+..+-.... ...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999887543 33333333333 232 357788888877776652 1 2222222211111110 010
Q ss_pred h--------hHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCCch
Q 037537 146 C--------LIKQLHCLAIYCG-FDHYASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDEVSWNSMVVAYGQHREGL 213 (677)
Q Consensus 146 ~--------~~~~i~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~~ 213 (677)
. .+.+..+..++.+ -.|++..|-+ --|+..++++.|.+...+. +..-+...|..|.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 0 1222222233322 2333333322 2355556677776666655 23445666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHHcCCCHHHHHHHHh
Q 037537 214 EALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGGLQFHAHLIKSGF-HQNSHIGSGLIDLYAKCSGDMRDCMKVFE 291 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~~A~~~f~ 291 (677)
+|+.+.+.....- |+ -.-...-+..-...++.+++.....+++..-- .+.+ -..++ -....+.+.
T Consensus 531 ~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~-~g~~~~lk~ 597 (799)
T KOG4162|consen 531 EALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLD-EGKLLRLKA 597 (799)
T ss_pred HHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhh-hhhhhhhhc
Confidence 7777766554421 11 00001111111123444444444333332100 0000 00011 112222222
Q ss_pred hCC----C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhccc
Q 037537 292 EIP----Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRS 366 (677)
Q Consensus 292 ~~~----~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~ 366 (677)
.+. + .+...-..-+.+.++.++ +.+..-. .|...-+.|+......++
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~-~Lp~s~~~~~~~~~~~~~------------------------- 649 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQL--KSAGSEL-KLPSSTVLPGPDSLWYLL------------------------- 649 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhh--hhccccc-ccCcccccCCCCchHHHH-------------------------
Confidence 221 0 111111111111111100 0000000 022222222221110000
Q ss_pred CccchhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 037537 367 NRISVNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVL 442 (677)
Q Consensus 367 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 442 (677)
...|....+.+.+.+..++|.-.+.+..+- ....|......+...|..++|.+.|..... +.|+ ....+++.
T Consensus 650 --~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 650 --QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALA 725 (799)
T ss_pred --HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence 234556678888889999998777766553 334566666778889999999999999988 5677 45788888
Q ss_pred HHHhccCCHHHHHH--HHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 443 SACAHTGKVAEGQK--YFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 443 ~a~~~~g~~~~a~~--~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+...|+..-+.. ++..+.+ +.| +.+.|-.+...+-+.|+.++|-+.|...
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 88899997666665 8888875 455 5788999999999999999999999865
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8e-07 Score=83.46 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHc
Q 037537 200 NSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKC 279 (677)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 279 (677)
+.|.++|.+.|.+.+|...|+.-+.. .|-..||..+-++|.+..++..|..++.+-++. ++-|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888889999998888887764 456677888888888888888888888877665 244444444455555555
Q ss_pred CCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC
Q 037537 280 SGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH 331 (677)
Q Consensus 280 g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~ 331 (677)
+. .++|.++++...+ .++.+...+..+|.-. ++++-|+.+++++.+-|+.
T Consensus 304 ~~-~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~-~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 304 EQ-QEDALQLYKLVLKLHPINVEAIACIAVGYFYD-NNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred Hh-HHHHHHHHHHHHhcCCccceeeeeeeeccccC-CChHHHHHHHHHHHHhcCC
Confidence 66 7777777776543 3444555555666666 7777788887777776653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=78.76 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=140.3
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACA 446 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 446 (677)
+...|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|..+.|.+-|++.+.. .|+ ....|..-.-++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 3456777899999999999999998763 3458999999999999999999999999984 454 567777777788
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVML 526 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l 526 (677)
..|.+++|.+.|+.........--..+|..+.-+-.++|+++.|.+.|++. ++++|+++.+...+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra---------------L~~dp~~~~~~l~~ 179 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA---------------LELDPQFPPALLEL 179 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH---------------HHhCcCCChHHHHH
Confidence 899999999999999986333333668888888889999999999999876 68899999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 527 ANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 527 ~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
.......|++..|...++.....|.
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhccc
Confidence 9999999999999999999887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=80.25 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCC
Q 037537 37 SNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCG 110 (677)
Q Consensus 37 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g 110 (677)
|..+...|.+.|+.++|...|.+..+ .++.+|+.+...|...|++++|...|+...+ | +..+|..+...+...|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 44444444455555555555554444 2334455555555555555555555554432 2 2334444444455555
Q ss_pred ChhHHHHHHHHhHh
Q 037537 111 DTESALSLFKDMRE 124 (677)
Q Consensus 111 ~~~~A~~~~~~m~~ 124 (677)
++++|++.|++..+
T Consensus 147 ~~~eA~~~~~~al~ 160 (296)
T PRK11189 147 RYELAQDDLLAFYQ 160 (296)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-08 Score=59.76 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=27.2
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888873
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0012 Score=67.84 Aligned_cols=408 Identities=13% Similarity=0.082 Sum_probs=214.4
Q ss_pred HHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHH--HHHHHH--hCCCh
Q 037537 40 FILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNT--LISAYA--DCGDT 112 (677)
Q Consensus 40 ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~--~~g~~ 112 (677)
=++.+...|++++|.+.-+.+.. .|..++.+-+-+..+.+.+++|+++.+.-... .+++. +=.+|| +.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 35667788999999999988887 45667888888889999999999877654421 22222 344554 68899
Q ss_pred hHHHHHHHHhHhcCCCCCcc-cHHHHHHHhhcchh--hHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHh
Q 037537 113 ESALSLFKDMREKRFDTDGF-TLSGLITASSNNLC--LIKQLHCLAIYCGFD-HYASVNNSLLTCYSRNGFLDEAKRVFY 188 (677)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~ 188 (677)
++|+..++ |..++.. +...=-..|.+.+. .+-.|+..+.+++.+ .+...-..++..-.. -.+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence 99999988 4444432 22222223444554 677777777776653 223222333322111 1111 344
Q ss_pred hcCCCCCeeeHHHHH---HHHHhCCCchHHHHHHHHHHHCC-------------CCCCHhH-HHHHHHHHccCCChHHHH
Q 037537 189 EMGEIKDEVSWNSMV---VAYGQHREGLEALQLFQEMVSLQ-------------LGLDMYT-LASILTAFTSLEDLVGGL 251 (677)
Q Consensus 189 ~m~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------------~~pd~~t-~~~ll~a~~~~~~~~~a~ 251 (677)
.. +.....+|..+- -.+...|++.+|+++++...+.+ ++-+..+ -.-+.-++-..|+-.+|.
T Consensus 166 ~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44 222233444333 34566788888888888773211 0001111 112223445668888888
Q ss_pred HHHHHHHHhCCCCchh----hHHHHHHHHHHcCCCHH-HHHHHHhhCCCCChhh--------------H-HHHHhhhccc
Q 037537 252 QFHAHLIKSGFHQNSH----IGSGLIDLYAKCSGDMR-DCMKVFEEIPQPDLVL--------------W-NTMISGYSQK 311 (677)
Q Consensus 252 ~~~~~~~~~g~~~~~~----~~~~li~~y~~~g~~~~-~A~~~f~~~~~~~~~~--------------~-~~li~~~~~~ 311 (677)
.++..+++... +|.. ..|.|+.+-....- .+ .+...|+......... . +.++..|.
T Consensus 245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~-~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 245 SIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNY-FDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHhcC-CCchHHHHHhcchhhhcccccc-CchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 88888877763 3332 22223322111111 11 1222222222111111 1 11222222
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHH
Q 037537 312 EEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRL 391 (677)
Q Consensus 312 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 391 (677)
+.-+.+.++-.... +..|. ..+..++..+.. .+......|.++
T Consensus 321 -nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~---------------------------------~~~~~~~ka~e~ 363 (652)
T KOG2376|consen 321 -NKMDQVRELSASLP--GMSPE-SLFPILLQEATK---------------------------------VREKKHKKAIEL 363 (652)
T ss_pred -hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHH---------------------------------HHHHHHhhhHHH
Confidence 11222222222111 11111 122222222211 011124455555
Q ss_pred HhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 392 FDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFE--------WMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 392 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
+....+ ...+.--.++.....+|+++.|++++. ...+.+..|- +...+...+.+.++-+.|..++.
T Consensus 364 L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 364 LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHH
Confidence 554433 334455667777889999999999999 6666555554 45556666777777777777777
Q ss_pred HhHHhcCC-ccChHHHHHH----HHHHhhcCChHHHHHHHHhCCC-CCCh
Q 037537 460 MMKDMFGF-EPEGEHYSCM----IDLLGRAGKLTDAERLIEAMPF-NPGS 503 (677)
Q Consensus 460 ~m~~~~~~-~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~-~~~~ 503 (677)
....-+.. .+......++ +..=.|.|+.++|..+++++.. .|+.
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 76654322 1222333333 3444577999999999999853 4443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00032 Score=65.57 Aligned_cols=345 Identities=12% Similarity=0.086 Sum_probs=189.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccc--c-ChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHH-HHHHHHhC
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQH--A-NVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYNT-LISAYADC 109 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~ 109 (677)
-+.+.+..+.+-.++.+|.++...-.+ | +....+.|...|-...++..|-..++++.+ |...-|.. -.+.+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 355566666677778888888776555 3 444566777788888888888888888765 44444442 24556678
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
+.+.+|+++...|... |+ ++...++. .+ ...-..+++..++.+.++
T Consensus 92 ~i~ADALrV~~~~~D~---~~--------------------L~~~~lqL---------qa--AIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PA--------------------LHSRVLQL---------QA--AIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred cccHHHHHHHHHhcCC---HH--------------------HHHHHHHH---------HH--HHhcccccCcchHHHHHh
Confidence 8888898888877642 11 11111100 01 112245778888888888
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhH
Q 037537 190 MGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIG 269 (677)
Q Consensus 190 m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (677)
...+.+..+.+...-...+.|++++|++-|+...+-+---....|+..+.-| +.++.+.|.+..++++++|+...+...
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 8224556666666666678888889988888887754434456676666444 567888888888888888764322211
Q ss_pred ----HHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc-CCCCCcchHHHHHHHh
Q 037537 270 ----SGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRV-GYHPDDCSFVCVISAC 344 (677)
Q Consensus 270 ----~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~ 344 (677)
+-.++.-.- |+...-+.. .-+..+|.-...+.+. ++++.|.+-+-+|.-. .-..|++|...+--.-
T Consensus 217 IGm~tegiDvrsv-gNt~~lh~S-------al~eAfNLKaAIeyq~-~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n 287 (459)
T KOG4340|consen 217 IGMTTEGIDVRSV-GNTLVLHQS-------ALVEAFNLKAAIEYQL-RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN 287 (459)
T ss_pred ccceeccCchhcc-cchHHHHHH-------HHHHHhhhhhhhhhhc-ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc
Confidence 000000000 000000000 0011223333334555 6666666666666422 2344555554332211
Q ss_pred hccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHHcCChHHH
Q 037537 345 SNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH-----NTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 345 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A 419 (677)
....+..+..-...+.... |-...++..++-.|||..-++.|-+++.+-... +...|+.+=..-...-.+++|
T Consensus 288 ~~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea 365 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQN--PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEA 365 (459)
T ss_pred ccCCccccHHHHHHHHhcC--CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHH
Confidence 1111333333333333332 222566777888888888888888888765542 233343322222233445666
Q ss_pred HHHHHHH
Q 037537 420 LRLFEWM 426 (677)
Q Consensus 420 ~~l~~~m 426 (677)
++-++.+
T Consensus 366 ~KKL~~L 372 (459)
T KOG4340|consen 366 FKKLDGL 372 (459)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0004 Score=71.67 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=122.4
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc
Q 037537 303 TMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC 382 (677)
Q Consensus 303 ~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~ 382 (677)
.+...+... |++++|...+++..+. .|+. ...+..+...|...
T Consensus 119 ~~a~~~~~~-G~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la~i~~~~ 161 (355)
T cd05804 119 MLAFGLEEA-GQYDRAEEAARRALEL--NPDD----------------------------------AWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhh--CCCC----------------------------------cHHHHHHHHHHHHc
Confidence 334455666 8888888888888764 3443 34556777888888
Q ss_pred CCHHHHHHHHhcCCC--C---Cc--chHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCCH
Q 037537 383 GNLEDARRLFDRMPE--H---NT--VSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPTNITF-V--SVLSACAHTGKV 451 (677)
Q Consensus 383 g~~~~A~~~~~~~~~--~---~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~ 451 (677)
|++++|...+++..+ + +. ..|..+...+...|+.++|+.+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999988887654 1 21 2355677888999999999999999865321 1222211 1 223333344433
Q ss_pred HHHHHH---HHHhHHh-cCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 452 AEGQKY---FSMMKDM-FGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 452 ~~a~~~---~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
+.+.+. ....... .+ ..........+.++...|+.++|..+++.+........ . ....+..........
T Consensus 242 ~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~-~~~~~~~~~~~~l~A 314 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSAD-----D-NKQPARDVGLPLAEA 314 (355)
T ss_pred ChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC-----c-hhhhHHhhhHHHHHH
Confidence 333332 1111111 01 11112223566778899999999999987732100000 0 001112345566777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 037537 528 NIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
.++...|++++|.+.+......+
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 88899999999999999887655
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-06 Score=83.49 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=138.3
Q ss_pred cCChhHHHHHHhhcCCCC--CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHH
Q 037537 177 NGFLDEAKRVFYEMGEIK--DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFH 254 (677)
Q Consensus 177 ~g~~~~A~~~f~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 254 (677)
.|.+..+..-.+.-...+ +.....-+.+++...|+++.++ .+.... -.|.......+...+....+-+.+..-+
T Consensus 14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 456655554333111111 2223445566777777765443 222222 2455555554544444434444443333
Q ss_pred HHHHHhCCC-CchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC
Q 037537 255 AHLIKSGFH-QNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 255 ~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~ 333 (677)
...+..... .+..+......+|...|+ +++|.+++++. .+.......+..|.+. ++++.|.+.++.|.+. . +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~-~~~AL~~l~~~--~~lE~~al~Vqi~L~~-~R~dlA~k~l~~~~~~--~-e 162 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGD-YEEALKLLHKG--GSLELLALAVQILLKM-NRPDLAEKELKNMQQI--D-E 162 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCH-HHHHHCCCTTT--TCHHHHHHHHHHHHHT-T-HHHHHHHHHHHHCC--S-C
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCC-HHHHHHHHHcc--CcccHHHHHHHHHHHc-CCHHHHHHHHHHHHhc--C-C
Confidence 333222222 222333333345555666 88887777665 4455556667777777 8888888888888753 2 2
Q ss_pred cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHH
Q 037537 334 DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGY 410 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (677)
..+. ..+..+.+..+.-.+++.+|..+|+++.+ +++.+.|.+..++
T Consensus 163 D~~l-------------------------------~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 163 DSIL-------------------------------TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp CHHH-------------------------------HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred cHHH-------------------------------HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 2333 23334455555445578888888888765 3556677778888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhHHh
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV-AEGQKYFSMMKDM 464 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 464 (677)
...|++++|.+++.+..+.+ +-|..|+..++....+.|+. +.+.+++..+...
T Consensus 212 l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 88888888888888876643 33466777777777777777 6677888887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00014 Score=67.97 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=192.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 037537 99 YNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178 (677)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 178 (677)
+++.+..+.+..++.+|++++..-.+.. | .+....+.|-..|-...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p--------------------------------~~rAgLSlLgyCYY~~Q 58 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--P--------------------------------RSRAGLSLLGYCYYRLQ 58 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--c--------------------------------cchHHHHHHHHHHHHHH
Confidence 5556666677778888888776655542 1 12333355667788888
Q ss_pred ChhHHHHHHhhc-CCCCCeeeHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH--HccCCChHHHHHHH
Q 037537 179 FLDEAKRVFYEM-GEIKDEVSWNS-MVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA--FTSLEDLVGGLQFH 254 (677)
Q Consensus 179 ~~~~A~~~f~~m-~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a--~~~~~~~~~a~~~~ 254 (677)
++..|-..++++ ...|...-|.. -...+.+.+.+.+|+.+...|... |+...-..-+.+ ....+|+..+..+.
T Consensus 59 ~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 59 EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 889998888888 23343333332 235566788899999998888653 332222222222 24567777777777
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC----CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC
Q 037537 255 AHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ----PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330 (677)
Q Consensus 255 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~ 330 (677)
++.... .+..+.+.......+.|+ .+.|.+-|+...+ ...+.||..+..|.+ ++++.|+++..++.+.|+
T Consensus 136 eQlp~e---n~Ad~~in~gCllykegq-yEaAvqkFqaAlqvsGyqpllAYniALaHy~~--~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 136 EQLPSE---NEADGQINLGCLLYKEGQ-YEAAVQKFQAALQVSGYQPLLAYNLALAHYSS--RQYASALKHISEIIERGI 209 (459)
T ss_pred HhccCC---Cccchhccchheeecccc-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh--hhHHHHHHHHHHHHHhhh
Confidence 665422 244445555556677788 9999999988764 455788888877764 688999999999999886
Q ss_pred CCCcch-HHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchH
Q 037537 331 HPDDCS-FVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSL 403 (677)
Q Consensus 331 ~p~~~t-~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~ 403 (677)
+-.+.. ......+- ... +.....+|...+ +..+|.-...+.+.|+.+.|.+.+-.|+. -|++|.
T Consensus 210 r~HPElgIGm~tegi-DvrsvgNt~~lh~Sal--------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGI-DVRSVGNTLVLHQSAL--------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred hcCCccCccceeccC-chhcccchHHHHHHHH--------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 532110 00000000 000 111111111111 44455556667889999999999999985 477776
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
..+.-.- ..+++.+..+-+.-+++.+ +-...||..++-.|++..-++.|-.++.+
T Consensus 281 HN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6554322 2344555555555555543 33467999999999999888888877654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.5e-07 Score=56.91 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMM 461 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 461 (677)
|+.||..||+++|+++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00055 Score=74.24 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMP---EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
..++.....-.++.++-..||+|.-. ..-|++.-|...|-.-. ..+..+|..+...+.++.+++-|...|...+..
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 33444444444444434444444333 44456666665554332 235566766666677777777777777766653
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHH
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD---MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIAL 506 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (677)
. +.|...|......-...|+.-+...+|..-.+ ..|-.|+..-|-|....-...|+.++-..-.++++. ..
T Consensus 880 d-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s-----As 953 (1238)
T KOG1127|consen 880 D-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS-----AS 953 (1238)
T ss_pred C-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh-----hH
Confidence 2 22344554444334455555555555554111 113334444444444444556665555544444431 14
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 507 KAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 507 ~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
.+.++.+.-.|+...+|...+...-+.+.+++|.++..+.
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5667788889999999999998888889888888776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0007 Score=71.74 Aligned_cols=383 Identities=14% Similarity=0.136 Sum_probs=198.6
Q ss_pred ChhhHHHHHH--HHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCC-----------CCc-ch
Q 037537 33 SAYLSNHFIL--LYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQ-----------PDL-VS 98 (677)
Q Consensus 33 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------~~~-~~ 98 (677)
|+.|-..+++ .|...|+.+.|.+..+.+. +..+|..+.+++.+.++++-|.-.+-.|.. .|. ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4455555553 3556677777766555544 455677777777777777777666666643 011 11
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 037537 99 YNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178 (677)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 178 (677)
-.-....-.+.|.+++|+.+|++-.+. ..|=..|-..|
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~------------------------------------------DLlNKlyQs~g 840 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRY------------------------------------------DLLNKLYQSQG 840 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHH------------------------------------------HHHHHHHHhcc
Confidence 111112223556677777777666542 22334566778
Q ss_pred ChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHH----------HCCC---------CCCHhHHHHHHH
Q 037537 179 FLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMV----------SLQL---------GLDMYTLASILT 239 (677)
Q Consensus 179 ~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~g~---------~pd~~t~~~ll~ 239 (677)
.+++|.++-+.-....=..||..-..-+-..++.+.|++.|++-. .... .-|...|..--.
T Consensus 841 ~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 841 MWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ 920 (1416)
T ss_pred cHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence 888887776543000112245555555555677777777766431 1110 112222333333
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHH
Q 037537 240 AFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
-.-..|+.+.|+.+|..+.+ |-+++...+-.|+ +++|-++-++- .|....-.+...|-.. |++.+|.
T Consensus 921 YlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk-~~kAa~iA~es--gd~AAcYhlaR~YEn~-g~v~~Av 987 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK-TDKAARIAEES--GDKAACYHLARMYEND-GDVVKAV 987 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC-chHHHHHHHhc--ccHHHHHHHHHHhhhh-HHHHHHH
Confidence 33445666666666655443 2334444444566 77776666553 4556666777788777 8899999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccChhHHH-------------HHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 320 GCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGK-------------QIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~-------------~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.+|.+.+ +|...|+.|-..+++.-. ....+..+.|.. ...-+-.|-|.|.+.
T Consensus 988 ~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~------~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 988 KFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY------AHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh------hhHHHHHHHhhcchH
Confidence 9988765 456666666554411111 111111122211 122344566677766
Q ss_pred HHHHHHhcCCC--------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 037537 387 DARRLFDRMPE--------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVA 452 (677)
Q Consensus 387 ~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 452 (677)
+|.++-=+-.+ .|+...+.-..-+..+.++++|..++-..++ |...+..|...| +.
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~ 1122 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VR 1122 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-Cc
Confidence 66654221111 2333444444555666777777777665543 334445554433 22
Q ss_pred HHHHHHHHhHHhcCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 453 EGQKYFSMMKDMFGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
-..++-+.|.-.-.-.|+ ......+.+.+.+.|.+..|-+-|...
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 222222233211011222 234555666777777777776666544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.5e-05 Score=68.27 Aligned_cols=186 Identities=17% Similarity=0.130 Sum_probs=149.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
..|.-.|...|+ ...|.+-+++..+ .+..+|..+...|-+. |+.+.|.+-|++... +.|+.
T Consensus 39 lqLal~YL~~gd-~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~-Ge~~~A~e~YrkAls--l~p~~------------ 102 (250)
T COG3063 39 LQLALGYLQQGD-YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL-GENDLADESYRKALS--LAPNN------------ 102 (250)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChhhHHHHHHHHHh--cCCCc------------
Confidence 345567778788 8888888888764 3345788888888888 888999998888776 34543
Q ss_pred cChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-C----CcchHHHHHHHHHHcCChHHHHH
Q 037537 347 LSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-H----NTVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 347 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~ 421 (677)
-.+.|.....+|..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+
T Consensus 103 ----------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 103 ----------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred ----------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 66778899999999999999999998764 4 34589999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
.|++.++.. +-...++..+.......|++-.|..+++..... ..++.++....|..-.+.|+-+.|.+.=..
T Consensus 161 ~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 161 YLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999853 333678888888889999999999999998876 338888888888888899998888766443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=73.71 Aligned_cols=150 Identities=12% Similarity=0.189 Sum_probs=119.7
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 453 (677)
.-+..|.+.|+++....-.+.+..+. . .|...++.++++..+++.++.. +.|...|..+...+...|++++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34567889999888766554433321 0 1223567788888899888865 6668899999999999999999
Q ss_pred HHHHHHHhHHhcCCcc-ChHHHHHHHHH-HhhcCC--hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 454 GQKYFSMMKDMFGFEP-EGEHYSCMIDL-LGRAGK--LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
|...|+...+. .| +...+..+..+ +.+.|+ .++|.+++++. ++++|+++.++..|...
T Consensus 92 A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a---------------l~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 92 ALLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKA---------------LALDANEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH---------------HHhCCCChhHHHHHHHH
Confidence 99999999864 55 57788888886 467787 58999999876 58889999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 037537 530 YAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 530 y~~~g~~~~a~~~~~~m~~~g 550 (677)
+...|++++|...|+++.+..
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999998754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00051 Score=70.83 Aligned_cols=291 Identities=9% Similarity=-0.074 Sum_probs=170.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhc--CCCCCeee---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHH---H
Q 037537 167 NNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVS---WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLAS---I 237 (677)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~---l 237 (677)
+..+...|...|+.+++.+.+... ...++... .......+...|++++|.+++++..+.. |+ ...+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHH
Confidence 344445566667777766666554 12222222 2222345677899999999999988753 43 333332 1
Q ss_pred HHHHccCCChHHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCC
Q 037537 238 LTAFTSLEDLVGGLQFHAHLIKSGFHQN-SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 238 l~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~ 313 (677)
.......+..+.+.+.+.. .....|+ ......+...+...|+ +++|.+.+++..+ .+...+..+...|... |
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~-g 162 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRALELNPDDAWAVHAVAHVLEMQ-G 162 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-C
Confidence 1111223444555554443 1122233 3344455667888899 9999999998763 4456677788888888 9
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
++++|..++.+....... +.... ...+..+...+...|+.++|..+|+
T Consensus 163 ~~~eA~~~l~~~l~~~~~-~~~~~-------------------------------~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 163 RFKEGIAFMESWRDTWDC-SSMLR-------------------------------GHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred CHHHHHHHHHhhhhccCC-Ccchh-------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988764211 11111 2334567788899999999999999
Q ss_pred cCCCCCc--chHH------HHHHHHHHcCChHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 394 RMPEHNT--VSLN------SMIAGYAQHGIGMEALRLFEWMLE---TNIP--PTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 394 ~~~~~~~--~~~~------~li~~~~~~g~~~~A~~l~~~m~~---~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
+...++. ..+. .++.-+...|....+..+ +.+.. ...+ ...........++...|+.++|...++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8753222 2222 222233344433333332 22211 1111 1112223566677889999999999998
Q ss_pred hHHhcCCcc--------ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 461 MKDMFGFEP--------EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 461 m~~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+... ...+ .+.......-++.+.|+.++|.+.+...
T Consensus 290 l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 290 LKGR-ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764 2110 1222233334566999999999998865
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=75.99 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=120.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--CC-c---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--HN-T---VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI----TF 438 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 438 (677)
+..+..+...|.+.|++++|...|+++.+ |+ . ..|..+..+|.+.|++++|+..|+++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 55667777888899999999999988764 32 2 35677888999999999999999999884 34321 34
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCccChH-HH-----------------HHHHHHHhhcCChHHHHH
Q 037537 439 VSVLSACAHT--------GKVAEGQKYFSMMKDMFGFEPEGE-HY-----------------SCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 439 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~-----------------~~li~~~~~~g~~~~A~~ 492 (677)
..+..++... |+.++|.+.|+.+.+. .|+.. .+ ..+.+.|.+.|++++|..
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4444444443 7889999999999875 34322 11 134567888899999999
Q ss_pred HHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 493 LIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 493 ~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+++... .|+ .|..+..+..++.+|...|++++|..+++.+..+
T Consensus 188 ~~~~al~~~p~-------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 188 RFETVVENYPD-------------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHCCC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9887621 111 2345678999999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=69.23 Aligned_cols=123 Identities=10% Similarity=0.058 Sum_probs=97.7
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 390 RLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 390 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
.+|++..+-++..+..+...+.+.|++++|...|+...... +.+..++..+..++...|++++|...|+...+. .|
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p 89 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML---DA 89 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CC
Confidence 34444444344456667788899999999999999998854 446788888999999999999999999999863 45
Q ss_pred -ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 470 -EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 470 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
+...+..+..++.+.|++++|.+.++.. +++.|+++..|....++..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~A---------------l~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTA---------------IKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHH
Confidence 6788888999999999999999999876 5777888888877665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0054 Score=72.04 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=162.1
Q ss_pred HHHHhcCChhHHHHHHhhc-C--CCCCe----eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCC---C--CHhHHHHHHH
Q 037537 172 TCYSRNGFLDEAKRVFYEM-G--EIKDE----VSWNSMVVAYGQHREGLEALQLFQEMVSLQLG---L--DMYTLASILT 239 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--d~~t~~~ll~ 239 (677)
..+...|++++|...+++. . ...+. ..++.+...+...|++++|...+++.....-. + ...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4566789999999988875 1 11121 23455666777899999999999888643111 1 1234455566
Q ss_pred HHccCCChHHHHHHHHHHHHh----CCCC---chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC------CC--hhhHHHH
Q 037537 240 AFTSLEDLVGGLQFHAHLIKS----GFHQ---NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ------PD--LVLWNTM 304 (677)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~------~~--~~~~~~l 304 (677)
.+...|+++.|...+....+. +... ....+..+...+...|+ +++|...+++... +. ...+..+
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR-LDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 778899999999998877653 2111 12234445556666688 9999888877532 11 2233334
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcCCCCC-cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPD-DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
...+... |++++|.+.+.+.....-... ...+. .......+..+...|
T Consensus 619 a~~~~~~-G~~~~A~~~l~~a~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~g 667 (903)
T PRK04841 619 AKISLAR-GDLDNARRYLNRLENLLGNGRYHSDWI------------------------------ANADKVRLIYWQMTG 667 (903)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHhcccccHhHh------------------------------hHHHHHHHHHHHHCC
Confidence 4455666 888999888887754211111 00000 000111224445578
Q ss_pred CHHHHHHHHhcCCCCCcc-------hHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCH
Q 037537 384 NLEDARRLFDRMPEHNTV-------SLNSMIAGYAQHGIGMEALRLFEWMLET----NIPPT-NITFVSVLSACAHTGKV 451 (677)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~ 451 (677)
+.+.|...+.....+... .+..+..++...|++++|..++++.... |..++ ..+...+..++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 888888888765542211 1345667788889999999998887653 32332 23555666677788999
Q ss_pred HHHHHHHHHhHHh
Q 037537 452 AEGQKYFSMMKDM 464 (677)
Q Consensus 452 ~~a~~~~~~m~~~ 464 (677)
++|...+.+..+.
T Consensus 748 ~~A~~~L~~Al~l 760 (903)
T PRK04841 748 SEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=81.50 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=169.9
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--------cChhHHHHHHHHHHhcCChhHHHHHhccC
Q 037537 20 SLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--------ANVFSFNVLLAAYARQLRIASARQLFDQI 91 (677)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~m 91 (677)
+=|++++..+ |.+...|-.-+......+++++|++++++... .-...|.++++.-...|.-+...++|++.
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3455666555 77788899999999999999999999999887 22347888888888888888999999998
Q ss_pred CC-CC-cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCC-CChhH
Q 037537 92 PQ-PD-LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFD-HYASV 166 (677)
Q Consensus 92 ~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~-~~~~~ 166 (677)
.+ -| -..|..|...|.+.+.+++|-++|+.|.+. +.-....|........+..+ .++.+....+++--. -...+
T Consensus 1524 cqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 77 34 346889999999999999999999999876 23455566666666666655 666676666665322 24556
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--hHHHHHHHHHc
Q 037537 167 NNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM--YTLASILTAFT 242 (677)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~ 242 (677)
....+.+-.++|+.+.++.+|+.. .-+.-...|+..|..=.++|+.+.+..+|++....++.|-. +-|.-.|.---
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 667777788889999999999887 22234567999999999999999999999999888776642 33444444333
Q ss_pred cCCChHHHH
Q 037537 243 SLEDLVGGL 251 (677)
Q Consensus 243 ~~~~~~~a~ 251 (677)
..|+-..++
T Consensus 1683 ~~Gde~~vE 1691 (1710)
T KOG1070|consen 1683 SHGDEKNVE 1691 (1710)
T ss_pred hcCchhhHH
Confidence 334433333
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-06 Score=54.15 Aligned_cols=35 Identities=43% Similarity=0.598 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN 435 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 435 (677)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0057 Score=62.35 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=75.9
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cCh-hHHHHHHHHHHhcCChhHH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANV-FSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A 84 (677)
+....|+++.|...|...+... |++-..|..-..+|++.|++++|.+=-....+ |+- ..|+.+..++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4456789999999999999887 66888888889999999999998877666666 442 3688888888888999999
Q ss_pred HHHhccCCC--C-CcchHHHHHHHH
Q 037537 85 RQLFDQIPQ--P-DLVSYNTLISAY 106 (677)
Q Consensus 85 ~~~f~~m~~--~-~~~~~~~li~~~ 106 (677)
...|.+-.+ | |...++-+..++
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999988765 2 344455555555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-06 Score=54.26 Aligned_cols=35 Identities=46% Similarity=0.721 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDG 131 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 131 (677)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.1e-05 Score=75.18 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=106.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
+..+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++.. +-|...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566667778999999999999998887778889999999999999999999999753 4455666666677889999
Q ss_pred HHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 451 VAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
.+.|+.+.+++.+ ..|+ ..+|..|..+|.+.|++++|+..++.+|..
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999985 4675 669999999999999999999999998754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0064 Score=58.32 Aligned_cols=309 Identities=12% Similarity=0.122 Sum_probs=182.0
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhh
Q 037537 71 LLAAYARQLRIASARQLFDQIPQPDLVSYNTLI---SAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCL 147 (677)
Q Consensus 71 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 147 (677)
|.+.+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.++. +||-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~--------------- 106 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFM--------------- 106 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHH---------------
Confidence 455556678888888888888888888887775 4688888888888888887763 56522
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 037537 148 IKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ 226 (677)
Q Consensus 148 ~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 226 (677)
...++.| ..+.+.|.++.|..=|+.+ ...|+..+ ...++.+.- +.+++.
T Consensus 107 -----~ARiQRg------------~vllK~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl~-------~~~e~~--- 156 (504)
T KOG0624|consen 107 -----AARIQRG------------VVLLKQGELEQAEADFDQVLQHEPSNGL---VLEAQSKLA-------LIQEHW--- 156 (504)
T ss_pred -----HHHHHhc------------hhhhhcccHHHHHHHHHHHHhcCCCcch---hHHHHHHHH-------hHHHHH---
Confidence 1112222 3466889999999999988 23332211 111221111 111111
Q ss_pred CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC---CCCChhhHHH
Q 037537 227 LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI---PQPDLVLWNT 303 (677)
Q Consensus 227 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~---~~~~~~~~~~ 303 (677)
.....+..+...|+...+.....++++.. +.|...+..-..+|...|. +..|+.-+... .+.++...--
T Consensus 157 ------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 157 ------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred ------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHH
Confidence 12233344556677777777777777664 5677777777788888777 77776555443 3455566666
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH--HHHHc
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV--AMYSK 381 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li--~~y~k 381 (677)
+-.-+... |+.+.++...++-++ +.||....-..-.-.- .+. -+|- .....
T Consensus 229 is~L~Y~v-gd~~~sL~~iRECLK--ldpdHK~Cf~~YKklk--------Kv~----------------K~les~e~~ie 281 (504)
T KOG0624|consen 229 ISQLLYTV-GDAENSLKEIRECLK--LDPDHKLCFPFYKKLK--------KVV----------------KSLESAEQAIE 281 (504)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHc--cCcchhhHHHHHHHHH--------HHH----------------HHHHHHHHHHh
Confidence 66666677 888888888877765 4677543211111100 000 0111 11123
Q ss_pred cCCHHHHHHHHhcCCC--C--Ccc---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 382 CGNLEDARRLFDRMPE--H--NTV---SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~--~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.+++.++.+..+...+ | ..+ .+..+-.+|...|++.+|++.-.+.++ +.|| ..++.-=..++.-..++|.
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444332 1 112 233455566667777777777777766 4455 5566666666666667777
Q ss_pred HHHHHHHhHH
Q 037537 454 GQKYFSMMKD 463 (677)
Q Consensus 454 a~~~~~~m~~ 463 (677)
|..-|+...+
T Consensus 360 AI~dye~A~e 369 (504)
T KOG0624|consen 360 AIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHh
Confidence 7777776654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0055 Score=71.94 Aligned_cols=334 Identities=10% Similarity=-0.039 Sum_probs=195.4
Q ss_pred HHhcCChhHHHHHHhhcC---CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC------CCCHh--HHHHHHHHHc
Q 037537 174 YSRNGFLDEAKRVFYEMG---EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL------GLDMY--TLASILTAFT 242 (677)
Q Consensus 174 ~~~~g~~~~A~~~f~~m~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~pd~~--t~~~ll~a~~ 242 (677)
....|+++.+...++.++ ...+..........+...|++++|...+......-- .|... ....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777777777761 111222233344455677899999888887754211 11111 1112223345
Q ss_pred cCCChHHHHHHHHHHHHhCCCCch----hhHHHHHHHHHHcCCCHHHHHHHHhhCCC-------CCh--hhHHHHHhhhc
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNS----HIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-------PDL--VLWNTMISGYS 309 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~~A~~~f~~~~~-------~~~--~~~~~li~~~~ 309 (677)
..|+++.+...+....+.--..+. ...+.+...+...|+ +++|...+++... +.. .+++.+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~-~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE-LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888887763111111 233445555666777 8888887776541 111 23344445566
Q ss_pred ccCCCHHHHHHHHHHHhhcCC---CCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 310 QKEEYSDQALGCFKKLNRVGY---HPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.. |++++|...+++.....- .++... . ...+..+...+...|+++
T Consensus 543 ~~-G~~~~A~~~~~~al~~~~~~~~~~~~~------------------------------~-~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 543 AQ-GFLQAAYETQEKAFQLIEEQHLEQLPM------------------------------H-EFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HC-CCHHHHHHHHHHHHHHHHHhccccccH------------------------------H-HHHHHHHHHHHHHhcCHH
Confidence 66 888888888777654200 011000 0 122344556667789999
Q ss_pred HHHHHHhcCCC------C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHhccCCHH
Q 037537 387 DARRLFDRMPE------H--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPTNITF-----VSVLSACAHTGKVA 452 (677)
Q Consensus 387 ~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-----~~ll~a~~~~g~~~ 452 (677)
+|...+++... + ....+..+...+...|+.++|...+.+.....- ......+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99888876532 1 123444566678889999999999988864211 1111111 11123345578999
Q ss_pred HHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
.|.+.+...... ..... ...+..+..++...|+.++|...+++.... . .-....+....++..+..+
T Consensus 671 ~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~--------~-~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 671 AAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN--------A-RSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------H-HHhCchHHHHHHHHHHHHH
Confidence 999987765432 11111 111345667788999999999999876310 0 0001111233567788899
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 037537 530 YAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 530 y~~~g~~~~a~~~~~~m~~~g 550 (677)
|...|+.++|...+.+..+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987754
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-05 Score=79.76 Aligned_cols=223 Identities=17% Similarity=0.137 Sum_probs=136.1
Q ss_pred CCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHH
Q 037537 261 GFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCV 340 (677)
Q Consensus 261 g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 340 (677)
+++|-...-..+...+.++|- ...|..+|+++ ..|.-.|-.|+.. |+..+|..+..+-.+ -+||..-|
T Consensus 393 ~lpp~Wq~q~~laell~slGi-tksAl~I~Erl-----emw~~vi~CY~~l-g~~~kaeei~~q~le--k~~d~~ly--- 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGI-TKSALVIFERL-----EMWDPVILCYLLL-GQHGKAEEINRQELE--KDPDPRLY--- 460 (777)
T ss_pred CCCCcchHHHHHHHHHHHcch-HHHHHHHHHhH-----HHHHHHHHHHHHh-cccchHHHHHHHHhc--CCCcchhH---
Confidence 355666677788889999999 99999999986 4677888889988 888889888887776 35665444
Q ss_pred HHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHH
Q 037537 341 ISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEAL 420 (677)
Q Consensus 341 l~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 420 (677)
..+.|......-+++|.++++....+--.+|+.++ ..++++.++.
T Consensus 461 --------------------------------c~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~ 505 (777)
T KOG1128|consen 461 --------------------------------CLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI---LSNKDFSEAD 505 (777)
T ss_pred --------------------------------HHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHH
Confidence 44444444444455555555544332111222111 2256666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 421 RLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 421 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
+.|+.-.+.+ +.-..||-.+-.+..+.++++.+.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|...+++..
T Consensus 506 ~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl- 580 (777)
T KOG1128|consen 506 KHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL- 580 (777)
T ss_pred HHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-
Confidence 6666655532 22344555555555666666666666666553 3454 4566666666666666666666666552
Q ss_pred CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 500 NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 500 ~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+-+-++...|...+-.-.+-|.|++|.+...+|.+.
T Consensus 581 --------------Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 581 --------------KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred --------------hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 111234445555555556666677776666666543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6e-05 Score=78.86 Aligned_cols=226 Identities=11% Similarity=0.061 Sum_probs=141.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCC
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG 281 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 281 (677)
+...+...|-..+|+.+|++... +..++.+|...|+..+|..+..+.++ -+||...|..+.+......-
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 44445555555555555554422 33344455555555555555555544 25666666666666555444
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHH
Q 037537 282 DMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIK 361 (677)
Q Consensus 282 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~ 361 (677)
+++|.++++....+--..|+.. ..++ ++++++.+.|+.-.+. .|-.
T Consensus 473 -yEkawElsn~~sarA~r~~~~~---~~~~-~~fs~~~~hle~sl~~--nplq--------------------------- 518 (777)
T KOG1128|consen 473 -YEKAWELSNYISARAQRSLALL---ILSN-KDFSEADKHLERSLEI--NPLQ--------------------------- 518 (777)
T ss_pred -HHHHHHHhhhhhHHHHHhhccc---cccc-hhHHHHHHHHHHHhhc--Cccc---------------------------
Confidence 7777777776554322222222 2235 7888888888765542 1211
Q ss_pred hhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 037537 362 IEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITF 438 (677)
Q Consensus 362 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 438 (677)
..+|-.+..+..++++++.|.+.|..... | +..+||.+-.+|.+.|+-.+|...+++..+.+ .-+...|
T Consensus 519 -------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iW 590 (777)
T KOG1128|consen 519 -------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIW 590 (777)
T ss_pred -------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeee
Confidence 44556666677788888888888877653 4 45689999999999999999999999998877 4444555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
...+......|.+++|.+.+..+........|..+-.-++..
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 556666678889999988888877542233355555444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00016 Score=73.89 Aligned_cols=248 Identities=12% Similarity=0.097 Sum_probs=148.4
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH
Q 037537 206 YGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD 285 (677)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~ 285 (677)
+.++|+..+|.-.|+..+.... -+...|-.|-...+..++-..|+..+...++.. +.+..+.-+|.-.|...|. -.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~-q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL-QNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh-HHH
Confidence 3455666666666665555321 134455555555555555555665555555543 3344555555556666555 555
Q ss_pred HHHHHhhCCCCChhhHHHHH-----------hhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHH
Q 037537 286 CMKVFEEIPQPDLVLWNTMI-----------SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQ 354 (677)
Q Consensus 286 A~~~f~~~~~~~~~~~~~li-----------~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 354 (677)
|.+.|+.-.... ..|..+. ..+... .......++|-++..
T Consensus 372 Al~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~-~~l~~i~~~fLeaa~--------------------------- 422 (579)
T KOG1125|consen 372 ALKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDS-SHLAHIQELFLEAAR--------------------------- 422 (579)
T ss_pred HHHHHHHHHHhC-ccchhccccCccccccCCcCCCCH-HHHHHHHHHHHHHHH---------------------------
Confidence 555555431100 0000000 111111 222233333333322
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037537 355 IHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI 431 (677)
Q Consensus 355 i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 431 (677)
..+...| +.++..|.-.|--.|++++|.+.|+.... | |...||.|...++...+.++|++.|++.++ +
T Consensus 423 ------~~~~~~D-pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--L 493 (579)
T KOG1125|consen 423 ------QLPTKID-PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--L 493 (579)
T ss_pred ------hCCCCCC-hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--c
Confidence 2222234 77888898889999999999999998764 3 678999999999999999999999999999 7
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--------ccChHHHHHHHHHHhhcCChHHHHHHH
Q 037537 432 PPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGF--------EPEGEHYSCMIDLLGRAGKLTDAERLI 494 (677)
Q Consensus 432 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~ 494 (677)
+|+- .+...|.-+|...|.+++|...|-........ .++...|..|=.++.-.++.+-+.+..
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 8883 45555666799999999999888766543111 112345666555555555555444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0013 Score=71.40 Aligned_cols=176 Identities=18% Similarity=0.134 Sum_probs=110.0
Q ss_pred hHHHHHHHhhccccCh---hHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhH
Q 037537 50 LSAAHHAFNQTQHANV---FSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMR 123 (677)
Q Consensus 50 ~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (677)
...|...|=+..+.|+ ..|..|..-|...-+...|.+.|+..-+ .|..++......|++..+++.|..+.-.--
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3344444444444332 3577888888777788888888888766 356778888899999999999988832221
Q ss_pred hcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C-CCCCeeeHHH
Q 037537 124 EKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G-EIKDEVSWNS 201 (677)
Q Consensus 124 ~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~-~~~~~~~~~~ 201 (677)
+. .| .....+.+.. .| -.|.+.++...|..-|+.. . .+.|...|..
T Consensus 554 qk--a~-----------------a~~~k~nW~~-rG------------~yyLea~n~h~aV~~fQsALR~dPkD~n~W~g 601 (1238)
T KOG1127|consen 554 QK--AP-----------------AFACKENWVQ-RG------------PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLG 601 (1238)
T ss_pred hh--ch-----------------HHHHHhhhhh-cc------------ccccCccchhhHHHHHHHHhcCCchhHHHHHH
Confidence 11 11 0011111111 11 2455667777777777766 2 3347778888
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH--HHccCCChHHHHHHHHHHHHh
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILT--AFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--a~~~~~~~~~a~~~~~~~~~~ 260 (677)
+..+|...|++..|+++|.+... +.|+. +|..... .-+..|.+.++...++.++..
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88999999999999999887765 44543 2222222 224567778888777776654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.012 Score=56.62 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH-HHHHHccCCC
Q 037537 171 LTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMV---VAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS-ILTAFTSLED 246 (677)
Q Consensus 171 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~ 246 (677)
-..+...|++.+|+.-|... ..-|...|.++. ..|...|+..-|+.=|.+.++ ++||-..-.. --..+.+.|.
T Consensus 45 Gk~lla~~Q~sDALt~yHaA-ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAA-VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 34455567888888888877 666666676665 457777888888887777776 5666432211 1123456777
Q ss_pred hHHHHHHHHHHHHhC
Q 037537 247 LVGGLQFHAHLIKSG 261 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g 261 (677)
++.|..-|..+++..
T Consensus 122 le~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHE 136 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888887777777663
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.019 Score=58.76 Aligned_cols=176 Identities=14% Similarity=0.118 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhhcC-CCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHH
Q 037537 315 SDQALGCFKKLNRVG-YHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
.+...+.+.++...- ..|+ .+|...++..-+.. ++.++.++....+.+..+..+.++++++.-|+ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 455566666665433 3444 56777777777776 99999999999998887744899999999887 46788899999
Q ss_pred hcCCC--CCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-
Q 037537 393 DRMPE--HNTV-SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFG- 466 (677)
Q Consensus 393 ~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 466 (677)
+.-.+ +|.. --...+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++..+.++-+++...|.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86554 3433 3455666677788888899999999988777774 6899999988999999998888888776544
Q ss_pred -CccChHHHHHHHHHHhhcCChHHHHH
Q 037537 467 -FEPEGEHYSCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 467 -~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (677)
..|...+-..+++.|+=.+....-..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHH
Confidence 44444455556676665555443333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7e-05 Score=65.47 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=92.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
..+|++.++ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A- 84 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA- 84 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH-
Confidence 346666666 45664 45567778899999999999999985 355 6788899999999999999999999987
Q ss_pred CCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 499 FNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 499 ~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|+++..+..+..++...|++++|...+++..+..
T Consensus 85 --------------l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 85 --------------LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred --------------HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999987644
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.6e-06 Score=51.60 Aligned_cols=34 Identities=38% Similarity=0.718 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCC
Q 037537 96 LVSYNTLISAYADCGDTESALSLFKDMREKRFDT 129 (677)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 129 (677)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00068 Score=76.03 Aligned_cols=223 Identities=13% Similarity=0.122 Sum_probs=158.0
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhH
Q 037537 195 DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-----DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIG 269 (677)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (677)
+...|-..|....+.++.++|.+++++.+.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4556888888888888888888888887653 211 12345555555555566677777777777652 234577
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
..|...|.+.+. .++|.++|+.|.+ .....|...+..+.+. ++-++|..++.+.++. -|....
T Consensus 1534 ~~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~--lPk~eH---------- 1599 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKS--LPKQEH---------- 1599 (1710)
T ss_pred HHHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhh--cchhhh----------
Confidence 788888888777 8888888888864 3556788888888877 7777777787777653 222110
Q ss_pred cChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHH
Q 037537 347 LSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLF 423 (677)
Q Consensus 347 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 423 (677)
+.+..-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|
T Consensus 1600 ----------------------v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1600 ----------------------VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred ----------------------HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 44445667777899999999999998764 34668999999999999999999999
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 037537 424 EWMLETNIPPTN--ITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 424 ~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 456 (677)
++....++.|-. ..|.-.|..=.+.|+-+.++.
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 999999888763 456666665556665444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.2e-06 Score=51.17 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP 433 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 433 (677)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00032 Score=67.56 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=78.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC--CC-cc---hHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCH-H
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE--HN-TV---SLNSMIAGYAQH--------GIGMEALRLFEWMLETNIPPTN-I 436 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~-~ 436 (677)
+..+...|.+.|++++|...|+++.+ |+ .. .+..+..++.+. |+.++|.+.|+++.+. .|+. .
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 150 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEY 150 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChh
Confidence 34445555556666666666665533 21 11 233333334332 5566667776666653 2332 1
Q ss_pred HH-----------------HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 437 TF-----------------VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 437 t~-----------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
.. ..+...+...|++++|...++...+.+.-.| ....+..+..+|.+.|++++|...++.+.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 1334556788999999999999987643333 35678889999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00074 Score=74.31 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCM 477 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 477 (677)
+..+-.|.....+.|+.++|..+++...+ +.|| ......+...+.+.+.+++|....+..... .|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHH
Confidence 34444455555555555555555555555 3444 334445555555555555555555555432 333 3444445
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
..++.+.|++++|.++|++.. ...|+++.++..+..++-..|+.++|...|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~---------------~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLS---------------RQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHH---------------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555542 223444555555555555555555555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=62.88 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=87.2
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 422 LFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 422 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
+|++.+. ..|+ ......+...+...|++++|.+.|+.+.+. -+.+...+..+...|.+.|++++|...++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~--- 77 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALA--- 77 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4566665 3454 345666677788899999999999998764 2336778888889999999999999998866
Q ss_pred CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 501 PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 501 ~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|+++..|..+..+|...|++++|...+++..+..
T Consensus 78 ------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 78 ------------AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ------------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45678888999999999999999999999998877643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.039 Score=56.50 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=103.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 443 (677)
..+|-.+++.-.+..-++.|+.+|.+..+ .++...++++.-|+ .++..-|..+|+-=++. +..++.-....++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 57888899999999999999999998875 26677788887666 46678999999986654 2334455566778
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
-+++.++-..++.+|+..... ++.|+ .+.|..+++-=..-|++..+.++-+++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888999999999999999987 77776 679999999989999999999998776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0015 Score=65.83 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=109.5
Q ss_pred HHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.+...|++++|+..++.+.. | |+..+......+..+|+.++|.+.+++++.. .|+ ......+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34567888899988888753 3 6666777788899999999999999999984 677 5566677788999999999
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
|..+++.... ..+-|+..|..|..+|...|+..+|..-.- ..|+..
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------------------------E~~~~~ 438 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA--------------------------------EGYALA 438 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH--------------------------------HHHHhC
Confidence 9999988876 355678899999999999998877766544 447778
Q ss_pred CChHHHHHHHHHHHhCC
Q 037537 534 GKWEEVATIRRLMRDRG 550 (677)
Q Consensus 534 g~~~~a~~~~~~m~~~g 550 (677)
|+|++|.......+++.
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999988887754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0015 Score=65.13 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC-CHHHHHHH
Q 037537 313 EYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG-NLEDARRL 391 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~~~ 391 (677)
+..++|+.+..++++ +.|+..| +++.....+.+.| +++++...
T Consensus 51 e~serAL~lt~~aI~--lnP~~yt----------------------------------aW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 51 ERSPRALDLTADVIR--LNPGNYT----------------------------------VWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred CCCHHHHHHHHHHHH--HCchhHH----------------------------------HHHHHHHHHHHcchhHHHHHHH
Confidence 667778887777775 3455433 3344444445556 57889998
Q ss_pred HhcCCC---CCcchHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037537 392 FDRMPE---HNTVSLNSMIAGYAQHGIG--MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFG 466 (677)
Q Consensus 392 ~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 466 (677)
++++.+ ++..+|+-....+.+.|+. ++++++++++++.. +-|..+|..-..++.+.|+++++++.++.+.+. .
T Consensus 95 ~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d 172 (320)
T PLN02789 95 AEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D 172 (320)
T ss_pred HHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C
Confidence 887764 4556787666556666653 67899999999864 456788988888888999999999999999975 3
Q ss_pred CccChHHHHHHHHHHhhcC---Ch----HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc----CC
Q 037537 467 FEPEGEHYSCMIDLLGRAG---KL----TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS----GK 535 (677)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g---~~----~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~----g~ 535 (677)
.-+...|+....++.+.| .. +++.++. .+.++++|+|.++|.-+..+|... ++
T Consensus 173 -~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~---------------~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 173 -VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT---------------IDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred -CCchhHHHHHHHHHHhccccccccccHHHHHHHH---------------HHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 234556666655554442 22 2333333 345788999999999999999874 34
Q ss_pred hHHHHHHHHHHHh
Q 037537 536 WEEVATIRRLMRD 548 (677)
Q Consensus 536 ~~~a~~~~~~m~~ 548 (677)
..+|.+...+..+
T Consensus 237 ~~~~~~~~~~~~~ 249 (320)
T PLN02789 237 DPEVSSVCLEVLS 249 (320)
T ss_pred chhHHHHHHHhhc
Confidence 4667777666444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.001 Score=68.24 Aligned_cols=212 Identities=15% Similarity=0.107 Sum_probs=147.5
Q ss_pred HHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChhHHHH
Q 037537 44 YSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQP---DLVSYNTLISAYADCGDTESALS 117 (677)
Q Consensus 44 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 117 (677)
+.+.|++.+|.-.|+..++ .+..+|-.|.-..+..++-..|+..+.+..+- |....-+|.-.|...|.-.+|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 3578888888888888877 44567888888888888888888888777653 45566667778888898899999
Q ss_pred HHHHhHhcCCC--------CCcccHHHHHHHhhcchh---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037537 118 LFKDMREKRFD--------TDGFTLSGLITASSNNLC---LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186 (677)
Q Consensus 118 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~---~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (677)
.|+.......+ ++..+-.. +....... ..+.+.+.....+...|+.+...|--.|--.|.++.|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887543200 01000000 01111111 2334444555556567888888888888888999999999
Q ss_pred Hhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 187 FYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 187 f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
|+.. ...| |...||-|...++...+.++|+..|++.++ ++|+ ......|--+|...|.+++|...+-.++.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9887 4445 667799999999999999999999999887 6676 33344455567888888888777655543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=61.54 Aligned_cols=153 Identities=12% Similarity=0.010 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcch
Q 037537 69 NVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNL 145 (677)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 145 (677)
..+-..+.-.|+-+.+..+...... .|...-+..+....++|++.+|...|++.....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------------- 130 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------------- 130 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------------------
Confidence 3334444455555555555544332 233334445566666666666666666655421
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CC-CCCeeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 037537 146 CLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GE-IKDEVSWNSMVVAYGQHREGLEALQLFQEMV 223 (677)
Q Consensus 146 ~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 223 (677)
++|...|+.+--.|.+.|++++|+.-|.+. .. ..+....|.|.-.|.-.|+.+.|..++....
T Consensus 131 ---------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 131 ---------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred ---------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444455555566666666666555554 11 1233445555555555666666666665555
Q ss_pred HCCCCCCHhHHHHHHHHHccCCChHHHHHHHHH
Q 037537 224 SLQLGLDMYTLASILTAFTSLEDLVGGLQFHAH 256 (677)
Q Consensus 224 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 256 (677)
..+. -|...-..+..+....|+++.|+.+-..
T Consensus 196 l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 196 LSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 4322 2444444455555566666666655443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.4e-05 Score=47.75 Aligned_cols=31 Identities=45% Similarity=0.634 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNI 431 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 431 (677)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.4e-05 Score=47.73 Aligned_cols=31 Identities=48% Similarity=0.856 Sum_probs=27.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCC
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRF 127 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (677)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0019 Score=59.85 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=68.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 444 (677)
..+...++....+.|++..|...|.+... +|...|+.+..+|.+.|+.++|..-|.+..+ +.|+ ...++.+.-.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms 177 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHH
Confidence 33444455555666666666666665543 3455666666666666666666666666655 2333 3445555555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
+.-.|+.+.|..++...... -.-|..+-..+.-+.+..|++++|.++..
T Consensus 178 ~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55566666666666655542 12244445555555566666666666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00045 Score=63.97 Aligned_cols=112 Identities=9% Similarity=0.018 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--HHHHH
Q 037537 382 CGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC-AHTGK--VAEGQ 455 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~--~~~a~ 455 (677)
.++.+++...++...+ .|...|..+...|...|++++|+..|++..+.. +.|...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4566677666666543 467789999999999999999999999998853 33466676766654 56676 58999
Q ss_pred HHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 456 KYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 456 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
++++...+. .| +...+..+...+.+.|++++|...++++
T Consensus 131 ~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 131 EMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999864 45 5778888888899999999999999987
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.008 Score=60.76 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMID 479 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 479 (677)
.+-.....+...|+.++|+..++.++.. .|| ..-.......+...++.++|.+.++.+... .|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 3444445566789999999999999885 455 555556667788999999999999999864 676 556667889
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+|.+.|++.+|..+++... .-+|+|+..|..|..+|...|+..++..-+.++-.
T Consensus 383 all~~g~~~eai~~L~~~~---------------~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYL---------------FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHhcCChHHHHHHHHHHh---------------hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999998773 45688999999999999999999999998887654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00052 Score=69.75 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=100.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
+|+..+...++++.|+++|+++.+.. |+.. ..++..+...++-.+|.+++++..+. .+-+......-.+.|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 45566677889999999999999864 6643 44677777788889999999998864 333666777777889999
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 485 GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
++.+.|+++.+++ .++.|.+-.+|..|..+|...|++++|+..++.+-
T Consensus 248 ~~~~lAL~iAk~a---------------v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKA---------------VELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHH---------------HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999998877 47778889999999999999999999999988763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0016 Score=57.13 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh--HHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG--EHYSCM 477 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l 477 (677)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|.. .....|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44455555 4778888888888888753 333 233344556777889999999999998876 322322 234456
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
...+...|++++|+..++..+.. |..+..+..++++|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~----------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE----------------AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc----------------chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888999999999999775422 22456788899999999999999998875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.012 Score=65.91 Aligned_cols=118 Identities=9% Similarity=0.090 Sum_probs=74.2
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAH 447 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 447 (677)
+.+.|.+...|+.. ++++|.+++.+. +.-|...+++.++.++|.++... .|+. ..|..+
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i------ 209 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRI------ 209 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHH------
Confidence 66677777777777 888887776653 33366666777888888887774 3332 222222
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.+.+...-|..--+.++--+..-|-...+++++..+++.+ ++.+|.|..+..-|+
T Consensus 210 ----------~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i---------------L~~~~~n~~a~~~l~ 264 (906)
T PRK14720 210 ----------ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI---------------LEHDNKNNKAREELI 264 (906)
T ss_pred ----------HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH---------------HhcCCcchhhHHHHH
Confidence 2233222222233445555666677777788888887765 577777777777777
Q ss_pred HHHH
Q 037537 528 NIYA 531 (677)
Q Consensus 528 ~~y~ 531 (677)
..|.
T Consensus 265 ~~y~ 268 (906)
T PRK14720 265 RFYK 268 (906)
T ss_pred HHHH
Confidence 7765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.13 Score=56.20 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=77.9
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHH
Q 037537 10 VGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLY--SKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 84 (677)
...++++.|++..+.+++.. |+ ..|..+++++ .+.|..++|..+++.... .|..+...+-..|-..+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45567788888888877764 22 2334444444 477888888877765554 5667777888888888888888
Q ss_pred HHHhccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHH
Q 037537 85 RQLFDQIPQ--PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLIT 139 (677)
Q Consensus 85 ~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 139 (677)
..++++..+ |+...-..+..+|++.+++.+-.+.--+|.+ .+.-+.+.|-++++
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVIS 152 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHH
Confidence 888888776 4433344555677777766554433333332 12234455544444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=59.61 Aligned_cols=360 Identities=15% Similarity=0.104 Sum_probs=190.3
Q ss_pred HHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHH
Q 037537 173 CYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 173 ~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~ 249 (677)
+....|+++.|...|.+. -.++|.+.|+.-..+|+..|++++|++=-.+-++ +.|+ ...|.-.-.++...|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 455679999999999876 2344888899999999999999999876666655 6677 4678888888889999999
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC------C-CC------ChhhHHHHHhhhcccC----
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI------P-QP------DLVLWNTMISGYSQKE---- 312 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~------~-~~------~~~~~~~li~~~~~~~---- 312 (677)
|+.-|..-++.. +.+....+.|.+++.. -..+.+.|..- . .| ....|..++..+-++.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~----~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLE----DYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhH----HHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999998887764 5566778888888722 11222222210 0 00 1112333443332221
Q ss_pred -----CCHHHHHHHHHHH-----hhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHHhhcccCccchhHHHHHHHH
Q 037537 313 -----EYSDQALGCFKKL-----NRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIKIEIRSNRISVNNALVAMYS 380 (677)
Q Consensus 313 -----~~~~~A~~l~~~m-----~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~ 380 (677)
.+...|...+... ...|..+...+-..- .-+-... ++.-.+.-. .+.+ ..-...+.++.-
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~d~~ee~~--~k~~-----a~~ek~lgnaay 235 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-KQEHNGFPIIEDNTEERR--VKEK-----AHKEKELGNAAY 235 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-cccCCCCCccchhHHHHH--HHHh-----hhHHHHHHHHHH
Confidence 1111222111110 001110000000000 0000000 000000000 0000 112234445555
Q ss_pred ccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCCH
Q 037537 381 KCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI-------TFVSVLSACAHTGKV 451 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~ 451 (677)
+..+++.|.+-+....+ .++.-++....+|...|.+.+....-...++.|-. ... .+..+-.++.+.+++
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 55556666655554433 23333455555666666666655555555544411 111 122223344455666
Q ss_pred HHHHHHHHHhHHhcCCccChHHHH-------------------------HHHHHHhhcCChHHHHHHHHhC-CCCCChHH
Q 037537 452 AEGQKYFSMMKDMFGFEPEGEHYS-------------------------CMIDLLGRAGKLTDAERLIEAM-PFNPGSIA 505 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~ 505 (677)
+.+..+|...... ...|+...-. .=...+.+.|++..|...+.++ ...|+...
T Consensus 315 ~~ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 315 EGAIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 6666666665554 2233322111 1123456778888888888876 23454443
Q ss_pred ------------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 506 ------------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 506 ------------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..-++..++++|+....|.--..++....+|++|++.|++-.+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33345566777777777777777777777777777777765543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0094 Score=59.49 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=131.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-ChHHHHHHHhhccc---cChhHHHHHHHHHHhcCCh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCG-CLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRI 81 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 81 (677)
-......+..+.|+.+.+.+++.. |-+..+|+.--..+...| .++++...++.+.. .+..+|+...-.+.+.|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 344555678899999999999887 556667776666676777 67899999998887 4455677665555566653
Q ss_pred --hHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHH
Q 037537 82 --ASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAI 156 (677)
Q Consensus 82 --~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~ 156 (677)
+++...++.+.+ .|..+|+.....+.+.|+++++++.++++.+.+...+
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-------------------------- 176 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-------------------------- 176 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--------------------------
Confidence 667777777664 5677888888888899999999999999988653221
Q ss_pred HhCCCCChhHHHHHHHHHHhc---CC----hhHHHHHHhhc-C-CCCCeeeHHHHHHHHHhC----CCchHHHHHHHHHH
Q 037537 157 YCGFDHYASVNNSLLTCYSRN---GF----LDEAKRVFYEM-G-EIKDEVSWNSMVVAYGQH----REGLEALQLFQEMV 223 (677)
Q Consensus 157 ~~g~~~~~~~~~~li~~~~~~---g~----~~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 223 (677)
.+|+.....+.+. |. .+++.....+. . ...|..+|+-+...+... ++..+|.+.+.+..
T Consensus 177 --------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 177 --------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred --------hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 2222222122111 11 23344444333 2 234677788888888773 33456777777765
Q ss_pred HCCCCCCHhHHHHHHHHHcc
Q 037537 224 SLQLGLDMYTLASILTAFTS 243 (677)
Q Consensus 224 ~~g~~pd~~t~~~ll~a~~~ 243 (677)
..+ ..+...+..++..++.
T Consensus 249 ~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 249 SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccc-CCcHHHHHHHHHHHHh
Confidence 532 1245556666666653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0072 Score=67.47 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=150.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeee-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---------
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVS-WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD--------- 230 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--------- 230 (677)
.+...+..|+..|...+++++|.++.+.. ...|+... |-.+...+.+.++..++..+ .+... ...+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHH
Confidence 34667888999999999999999998866 34454443 33333456666666666555 33221 1122
Q ss_pred ----------HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhh
Q 037537 231 ----------MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVL 300 (677)
Q Consensus 231 ----------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~ 300 (677)
...+-.+..+|.+.|+.+++..+++.+++.. +.|+.+.|-+...|+.. + +++|.+++.+.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d-L~KA~~m~~KA------- 175 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D-KEKAITYLKKA------- 175 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h-HHHHHHHHHHH-------
Confidence 2566677778888899999999999999988 77888999999999998 6 99999887765
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh-hcccCccchhHHHHHHH
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI-EIRSNRISVNNALVAMY 379 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~li~~y 379 (677)
+..|... +++.++.+++.++... .|+.+.+-. .+...+..+ ++..- +.++-.|-..|
T Consensus 176 ----V~~~i~~-kq~~~~~e~W~k~~~~--~~~d~d~f~--------------~i~~ki~~~~~~~~~-~~~~~~l~~~y 233 (906)
T PRK14720 176 ----IYRFIKK-KQYVGIEEIWSKLVHY--NSDDFDFFL--------------RIERKVLGHREFTRL-VGLLEDLYEPY 233 (906)
T ss_pred ----HHHHHhh-hcchHHHHHHHHHHhc--CcccchHHH--------------HHHHHHHhhhccchh-HHHHHHHHHHH
Confidence 3336666 7888999999998874 455544421 112222221 22222 55566777888
Q ss_pred HccCCHHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 037537 380 SKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYA 411 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 411 (677)
-+..+++++..+|..+.+ .|.....-++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 899999999999998875 45566777787776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.018 Score=53.55 Aligned_cols=172 Identities=18% Similarity=0.132 Sum_probs=102.7
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC
Q 037537 254 HAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~ 333 (677)
.+.+.......+......-...|.+.|+ .++|.+.......-.....|.- .+.+. .+.+-|.+.+++|++- -+
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~-~deAl~~~~~~~~lE~~Al~Vq--I~lk~-~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGD-FDEALKALHLGENLEAAALNVQ--ILLKM-HRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCC-hHHHHHHHhccchHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHcc---ch
Confidence 3333333333333333333445666566 7777777776443333333322 23344 5567777777777752 23
Q ss_pred cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHH
Q 037537 334 DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGY 410 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (677)
..|. ....++.+....-.+.+.+|.-+|++|.+ |+..+.|.+..++
T Consensus 169 d~tL-------------------------------tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 169 DATL-------------------------------TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHH-------------------------------HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence 3333 22334444444455678888888988876 4555667777888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhHHh
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV-AEGQKYFSMMKDM 464 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 464 (677)
...|++++|..++++.+... .-++.|+..++..-.+.|.. +-..+....++..
T Consensus 218 l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 88899999999998888764 44566777776666666654 3345566666543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0093 Score=55.44 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=113.5
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCC
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGK 450 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 450 (677)
-...|.+.|++++|.+.......-+....| +..+.+..+.+-|.+.+++|.+ -.+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchh
Confidence 345688999999999999884333333322 3445677789999999999987 3456788877777653 457
Q ss_pred HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH
Q 037537 451 VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY 530 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y 530 (677)
+..|.-+|++|.++ ..|+..+.+.+..+....|++++|..++++. +.-+|+++.+...++-.-
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea---------------L~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA---------------LDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHH---------------HhccCCCHHHHHHHHHHH
Confidence 89999999999874 6788888888888888999999999999987 344567777877777777
Q ss_pred HhcCChHHH-HHHHHHHHh
Q 037537 531 AASGKWEEV-ATIRRLMRD 548 (677)
Q Consensus 531 ~~~g~~~~a-~~~~~~m~~ 548 (677)
...|+-.++ .+...+.+.
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhCCChHHHHHHHHHHHh
Confidence 777876555 345555444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0081 Score=66.32 Aligned_cols=138 Identities=11% Similarity=0.123 Sum_probs=93.7
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
+..+-.|.....+. |.+++|..+++...+ +.||. ......+..
T Consensus 86 ~~~~~~La~i~~~~-g~~~ea~~~l~~~~~--~~Pd~----------------------------------~~a~~~~a~ 128 (694)
T PRK15179 86 ELFQVLVARALEAA-HRSDEGLAVWRGIHQ--RFPDS----------------------------------SEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--hCCCc----------------------------------HHHHHHHHH
Confidence 44455555555555 777888888777765 35554 444456667
Q ss_pred HHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 454 (677)
.+.+.+++++|...+++.... +....+.+..++.+.|++++|.++|++....+ +-+..++..+..++-..|+.++|
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 777788888888888777653 33455666777788888888888888887732 33367777777788888888888
Q ss_pred HHHHHHhHHhcCCccChHHHH
Q 037537 455 QKYFSMMKDMFGFEPEGEHYS 475 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~ 475 (677)
...|+...+. ..|...-|+
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~ 226 (694)
T PRK15179 208 RDVLQAGLDA--IGDGARKLT 226 (694)
T ss_pred HHHHHHHHHh--hCcchHHHH
Confidence 8888887764 344444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0022 Score=55.47 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
....+...+.+.|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++...+. .+.+...+..+...|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 34455566677777777777777777643 345566666677777777777777777776643 223456666667777
Q ss_pred hhcCChHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAM 497 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m 497 (677)
...|++++|.+.+++.
T Consensus 96 ~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 96 LALGEPESALKALDLA 111 (135)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7778888887777655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0021 Score=56.29 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=91.7
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCCCCcch-H-----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPEHNTVS-L-----NSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSV 441 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~-~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~l 441 (677)
..|..++..+. .++...+...++.+.+.+..+ | -.+...+...|++++|...|+........|+ ......+
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 45556666664 788888888888877533322 3 3345678889999999999999999762332 2345556
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+...|++++|+..++..... ......+....++|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888999999999999775432 234556778899999999999999999763
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00033 Score=54.78 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.|+++.|..+++.+.+.....|+...+-.+..+|.+.|++++|.+++++. +.+|.+......++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----------------~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----------------KLDPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----------------THHHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----------------CCCCCCHHHHHHHH
Confidence 35667777777777655111123344445677777777777777777662 22233445555667
Q ss_pred HHHHhcCChHHHHHHHHH
Q 037537 528 NIYAASGKWEEVATIRRL 545 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~ 545 (677)
.+|.+.|++++|++++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 777777777777777664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0053 Score=53.04 Aligned_cols=95 Identities=8% Similarity=-0.021 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
.+-.+..-+...|++++|.++|+.+.. +.|. ..-|-.|.-++-..|++++|...+... +.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A---------------~~L 98 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA---------------AQI 98 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hhc
Confidence 344455556789999999999999885 4664 556678888889999999999999876 578
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 516 EPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 516 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+|+|+.++..+...|...|+.+.|.+-|+.....
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999987653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0052 Score=51.54 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSC 476 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 476 (677)
++......+.+.|++++|.+.|+++.+.. |+ ...+..+..++...|++++|...|+.+...+.-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45556677778888888888888887642 32 23555677778888888888888888876522111 2455667
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 037537 477 MIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m 497 (677)
+..++.+.|+.++|.+.++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 777788888888888888766
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0029 Score=50.11 Aligned_cols=90 Identities=21% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHh
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLG 482 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 482 (677)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++...+. ...+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3344455555555555555555555432 222233444444444444455555544444432 1112233444444444
Q ss_pred hcCChHHHHHHHH
Q 037537 483 RAGKLTDAERLIE 495 (677)
Q Consensus 483 ~~g~~~~A~~~~~ 495 (677)
..|+.++|...++
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 4444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.023 Score=52.55 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=111.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSM---IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
++..+.-+...+|+.+.|..+++.+..+=+-++-.. ..-+-..|++++|+++++..++.+ +.|.+++.-=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344445555567888888888887654222222211 112445788999999999998876 5567777766666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.|.--+|.+-+....+. +..|.+.|.-+.+.|...|+++.|.--++++ +-+.|.++..+..+.
T Consensus 133 ~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~---------------ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL---------------LLIQPFNPLYFQRLA 195 (289)
T ss_pred cCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH---------------HHcCCCcHHHHHHHH
Confidence 77777888777777764 6778899999999999999999999888887 345567777777888
Q ss_pred HHHHhcCC---hHHHHHHHHHHHhC
Q 037537 528 NIYAASGK---WEEVATIRRLMRDR 549 (677)
Q Consensus 528 ~~y~~~g~---~~~a~~~~~~m~~~ 549 (677)
..+...|. .+-|.+++.+..+.
T Consensus 196 e~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 196 EVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 87766554 34455666655443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0062 Score=48.75 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCccChHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNI-PPTNITFVSVLSACAHTG--------KVAEGQKYFSMMKDMFGFEPEGEH 473 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 473 (677)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. ++-+.+.+++.|... +++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34566777777999999999999999999 899999999999877543 345678899999988 99999999
Q ss_pred HHHHHHHHhh
Q 037537 474 YSCMIDLLGR 483 (677)
Q Consensus 474 ~~~li~~~~~ 483 (677)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0033 Score=59.51 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=71.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChH
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLT 488 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 488 (677)
+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|.+-.+.... +.|. ...|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence 456678888888888888742 33456666667778888888888777666653 4554 567888888888888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 489 DAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
+|.+.|++. ++++|+|...+..|-.+
T Consensus 167 ~A~~aykKa---------------LeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKA---------------LELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhh---------------hccCCCcHHHHHHHHHH
Confidence 888887765 57777777555444333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0052 Score=48.60 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=76.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
++..+...+...|++++|...|+...+ .+...|..+...+...|++++|.+.|++..+.. +.+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 356678888999999999999998754 234678888999999999999999999998864 4445678888888999
Q ss_pred cCCHHHHHHHHHHhHH
Q 037537 448 TGKVAEGQKYFSMMKD 463 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~ 463 (677)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999988764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0066 Score=50.93 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
.++..+...+...|++++|...|..+.+.+.-.| ....+..+..++.+.|++++|.+.++... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~ 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV---------------K 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH---------------H
Confidence 3556667778889999999999999987522111 13466678999999999999999999873 3
Q ss_pred cCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 515 LEPS---NAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 515 l~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
..|. .+.++..+..+|.+.|++++|.+.++++.+..
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 3333 35678999999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0069 Score=54.90 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCHhHHHHHHHHHc-----cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHH
Q 037537 229 LDMYTLASILTAFT-----SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNT 303 (677)
Q Consensus 229 pd~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~ 303 (677)
.|..+|..++..+. +.|..+-....+..|.+.|++.|..+|+.|++.+=| |. +- -..+ +-+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~-fv-p~n~-----------fQ~ 110 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GK-FV-PRNF-----------FQA 110 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CC-cc-cccH-----------HHH
Confidence 45666666666653 346777777888889999999999999999999887 54 11 1111 222
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHHh
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIKI 362 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~~ 362 (677)
+-.-|- .+-+-|++++++|...|+.||..|+..+++.++..+ .....++.-++.+.
T Consensus 111 ~F~hyp---~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkf 168 (228)
T PF06239_consen 111 EFMHYP---RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKF 168 (228)
T ss_pred HhccCc---HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 222333 345789999999999999999999999999999888 77777777777663
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.18 Score=50.25 Aligned_cols=123 Identities=11% Similarity=0.175 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCC
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLE 245 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 245 (677)
..+..|.-+...|+...|.++-.+. ..||..-|-..+.+++..+++++-..+... +-++.-|-..+.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F-kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF-KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 3445566667788889999998888 778888899999999999998876665332 223477888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhh
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGY 308 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~ 308 (677)
+..+|..+...+ .+..-+.+|.++|+ +.+|.+.--+ .+|......+...+
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~-~~~A~~~A~~--~kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGD-YKEAAQEAFK--EKDIDLLKQILKRC 301 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCC-HHHHHHHHHH--cCCHHHHHHHHHHC
Confidence 888888776551 22667888899988 8887665333 23444444443333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0098 Score=60.77 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=54.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcC
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAG 485 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 485 (677)
...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++.+.+. .| +...|..+..+|.+.|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 344556677777777777776643 333555666666666677777777777666643 34 3455666666666777
Q ss_pred ChHHHHHHHHhC
Q 037537 486 KLTDAERLIEAM 497 (677)
Q Consensus 486 ~~~~A~~~~~~m 497 (677)
++++|...|++.
T Consensus 85 ~~~eA~~~~~~a 96 (356)
T PLN03088 85 EYQTAKAALEKG 96 (356)
T ss_pred CHHHHHHHHHHH
Confidence 777777766655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.01 Score=60.57 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=79.7
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV 451 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 451 (677)
....+...|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 35667788999999999998865 356678888999999999999999999999853 33577888888999999999
Q ss_pred HHHHHHHHHhHHhcCCccChHHH
Q 037537 452 AEGQKYFSMMKDMFGFEPEGEHY 474 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p~~~~~ 474 (677)
++|...|+...+. .|+....
T Consensus 87 ~eA~~~~~~al~l---~P~~~~~ 106 (356)
T PLN03088 87 QTAKAALEKGASL---APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHHh---CCCCHHH
Confidence 9999999999864 5654433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.23 Score=52.49 Aligned_cols=57 Identities=7% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHH
Q 037537 262 FHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKL 325 (677)
Q Consensus 262 ~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m 325 (677)
++.+....-.+.+|+...|. -++|.+.|-+-..|. +.+..|... +++.+|.++-++.
T Consensus 848 Lpe~s~llp~~a~mf~svGM-C~qAV~a~Lr~s~pk-----aAv~tCv~L-nQW~~avelaq~~ 904 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGM-CDQAVEAYLRRSLPK-----AAVHTCVEL-NQWGEAVELAQRF 904 (1189)
T ss_pred cCcccchHHHHHHHHHhhch-HHHHHHHHHhccCcH-----HHHHHHHHH-HHHHHHHHHHHhc
Confidence 35566666667777777777 777766665544432 234445555 6666666665544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.039 Score=54.48 Aligned_cols=127 Identities=12% Similarity=0.168 Sum_probs=63.1
Q ss_pred HHHHhc-CChhHHHHHHhhc-----C-CCC--CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-----CHh-HHHH
Q 037537 172 TCYSRN-GFLDEAKRVFYEM-----G-EIK--DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-----DMY-TLAS 236 (677)
Q Consensus 172 ~~~~~~-g~~~~A~~~f~~m-----~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~-t~~~ 236 (677)
..|-.. |++++|.+.|++. . ..+ -...+..+...+.+.|++++|+++|++....-... +.. .|..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 445555 5666666666554 0 111 11234556677788888888888888876543221 111 1222
Q ss_pred HHHHHccCCChHHHHHHHHHHHHh--CCCCc--hhhHHHHHHHHHHcC-CCHHHHHHHHhhCCCCCh
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKS--GFHQN--SHIGSGLIDLYAKCS-GDMRDCMKVFEEIPQPDL 298 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~--~~~~~~li~~y~~~g-~~~~~A~~~f~~~~~~~~ 298 (677)
.+-++...||+..|.+.++..... ++..+ ..+...|+.+|-... ..+.++..-|+.+.+.|.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 333445567777777777766543 23222 234455566655421 125566666666655443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0014 Score=48.20 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=50.7
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 477 MIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+...+.+.|++++|.+.|++. ++..|+++..|..+..++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~---------------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA---------------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH---------------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788999999999999977 5777889999999999999999999999999998764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.023 Score=51.27 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSC 476 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 476 (677)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++...+. .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 44677778888888999999999999887532222 347778888888999999999999888754 343 455566
Q ss_pred HHHHHh-------hcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 477 MIDLLG-------RAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 477 li~~~~-------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
+...|. +.|++++|...+++. ....+++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a--------~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA--------AEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH--------HHHHHHHHHhCccc
Confidence 666666 888999888888765 23455667777754
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0014 Score=48.82 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG-KWEEVATIRRLMRD 548 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 548 (677)
+...|..+...+.+.|++++|+..|++. ++++|+++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a---------------i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA---------------IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH---------------HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888899999999999999999876 6889999999999999999999 79999999988765
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.023 Score=51.38 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=77.5
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSC 476 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 476 (677)
...+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...++...+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566677777778888888888888876432222 356777777778888888888888887753 34 3445555
Q ss_pred HHHHHhhcCC-------hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 477 MIDLLGRAGK-------LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 477 li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
+..+|...|+ .++|...+++. ....+++++++|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A--------~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKA--------AEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHH--------HHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666554 44444444332 33445566777765 6666666665554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0045 Score=60.92 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-cCChHHHHHHHhhccc---cChhHHHHHHHHHHh
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSK-CGCLSAAHHAFNQTQH---ANVFSFNVLLAAYAR 77 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 77 (677)
|..+++.+-|.+..+.|+.+|.+..+.+ ..+..+|.....+--+ .++.+.|..+|+...+ .+...|..-++.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 7788889999999999999999999765 3334444444444233 5677779999999998 777889999999999
Q ss_pred cCChhHHHHHhccCCC--CC----cchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 78 QLRIASARQLFDQIPQ--PD----LVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 78 ~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
.|+.+.|+.+|+.... +. ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998765 22 347999999999999999999999999874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0057 Score=48.96 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHhHHHHHHHHHccCC--------ChHHHHHHHHHHHHhCCCCchhhHHH
Q 037537 201 SMVVAYGQHREGLEALQLFQEMVSLQL-GLDMYTLASILTAFTSLE--------DLVGGLQFHAHLIKSGFHQNSHIGSG 271 (677)
Q Consensus 201 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 271 (677)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445566666888888888888888888 888889988888876542 23456677888888888888888888
Q ss_pred HHHHHHH
Q 037537 272 LIDLYAK 278 (677)
Q Consensus 272 li~~y~~ 278 (677)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887776
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.52 Score=50.01 Aligned_cols=84 Identities=20% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHhhccc-cChhHHHHHHHH----------HHhcCChhHHHHHhccCCCCCcchH
Q 037537 31 PFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-ANVFSFNVLLAA----------YARQLRIASARQLFDQIPQPDLVSY 99 (677)
Q Consensus 31 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~----------~~~~g~~~~A~~~f~~m~~~~~~~~ 99 (677)
.|.+..|..|.....+.-.++.|+..|-+... +.+...-.|-.. -+-.|++++|.+++-.|.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA-- 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA-- 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh--
Confidence 35556666555555555555555555544433 111111111111 11135666666666655555533
Q ss_pred HHHHHHHHhCCChhHHHHHH
Q 037537 100 NTLISAYADCGDTESALSLF 119 (677)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~ 119 (677)
|..+.+.|++-...+++
T Consensus 767 ---ielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 767 ---IELRKKLGDWFRVYQLI 783 (1189)
T ss_pred ---HHHHHhhhhHHHHHHHH
Confidence 44445555555554444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0098 Score=60.95 Aligned_cols=116 Identities=11% Similarity=0.115 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhcCCCCC-----eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKD-----EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 238 (677)
......+++......+++++..++-+....|+ ..|..++|+.|.+.|..++++++++.=...|+=||.+|++.+|
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33345556666666777888888777722221 2345699999999999999999999999999999999999999
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHc
Q 037537 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKC 279 (677)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 279 (677)
..+.+.|++..|.++...|...+.-.+..++.--+..+.++
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888766666666666666664
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00071 Score=41.96 Aligned_cols=32 Identities=38% Similarity=0.625 Sum_probs=29.9
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChHHHH
Q 037537 509 ANHFLQLEPSNAVPYVMLANIYAASGKWEEVA 540 (677)
Q Consensus 509 ~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 540 (677)
.+++++++|+|+.+|..|..+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46789999999999999999999999999986
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0069 Score=62.02 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhH
Q 037537 100 NTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASV 166 (677)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~ 166 (677)
.++|+.|.+.|..++++.+++.=...|+-||.+|++.++..+.+.++ .+.++...|...+...+..+
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 34444444444445554444444444444555555555544444444 33344434433333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.66 Score=48.84 Aligned_cols=140 Identities=13% Similarity=0.126 Sum_probs=82.2
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 453 (677)
+-..|+...|+.++|..+.- .+|-.+-++++-+++- ..+..+...+..-+-+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccch
Confidence 44556666777777665542 2333344444433332 2234455555555556667777
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
|-++|.+|-.. .+++++....|+|.+|..+-++.|. .|+... .-++-+-+- .-+.---.+|-+
T Consensus 766 AaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~-pyaqwLAE~-----DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 766 AAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYM-PYAQWLAEN-----DRFEEAQKAFHK 829 (1081)
T ss_pred HHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccc-hHHHHhhhh-----hhHHHHHHHHHH
Confidence 88888877432 4567888888899999888888763 222211 011111111 124445577888
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 037537 533 SGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~~g~ 551 (677)
+|+-.||.++++++....+
T Consensus 830 AGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hcchHHHHHHHHHhhhhhh
Confidence 8999999999888865544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=52.72 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL 513 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 513 (677)
..+..+...+...|++++|...|+...+. ...+. ...+..+..+|.+.|++++|.+.+++. +
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l 99 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA---------------L 99 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------H
Confidence 45677777888999999999999999865 22221 457888899999999999999998876 4
Q ss_pred ccCCCCchhHHHHHHHHHhcCC--------------hHHHHHHHHHHHh
Q 037537 514 QLEPSNAVPYVMLANIYAASGK--------------WEEVATIRRLMRD 548 (677)
Q Consensus 514 ~l~p~~~~~~~~l~~~y~~~g~--------------~~~a~~~~~~m~~ 548 (677)
+..|.+...+..+..+|...|+ +++|.+++++...
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 6678888889999999988887 4566666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.26 Score=45.88 Aligned_cols=179 Identities=13% Similarity=0.147 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHhh---cC-CCCCcchH-HHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 313 EYSDQALGCFKKLNR---VG-YHPDDCSF-VCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~---~g-~~p~~~t~-~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.++++.++++.+|.. .| ..|+..+. --++-+.-..+ .+.+......+...- +.+ ..+.---.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S-~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGS-KRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCC-hhHHHHHHHHHHHhhchh
Confidence 456777777776653 23 44554432 23333333444 555655555544432 222 333333333355679999
Q ss_pred HHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 387 DARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 387 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
+|.++++.+.+. |.+++-.=+...-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998864 4566777777777889999999999998886 688999999999999999999999999999984
Q ss_pred hcCCccChH-HHHHHHHHHhhcC---ChHHHHHHHHhC
Q 037537 464 MFGFEPEGE-HYSCMIDLLGRAG---KLTDAERLIEAM 497 (677)
Q Consensus 464 ~~~~~p~~~-~~~~li~~~~~~g---~~~~A~~~~~~m 497 (677)
+.|... .+..+.+.+--.| +.+-|.+++.+.
T Consensus 183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 577544 4456666654444 455666666654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.016 Score=56.98 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA-CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 45556666666666666666666665432 2223333333333 22245555566666666664 33345556666666
Q ss_pred HhhcCChHHHHHHHHhCCCC-CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 481 LGRAGKLTDAERLIEAMPFN-PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+.+.|+.+.|..+|++.... +... .....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~-------------~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEK-------------QSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHH-------------HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchh-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655321 1100 0123566666666666666666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.003 Score=49.25 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHH
Q 037537 413 HGIGMEALRLFEWMLETNIP-PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDA 490 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 490 (677)
+|+++.|+.+|+++.+..-. |+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 67889999999999885421 2444555578888999999999999988 2 23343 24444557888999999999
Q ss_pred HHHHHh
Q 037537 491 ERLIEA 496 (677)
Q Consensus 491 ~~~~~~ 496 (677)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998875
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.018 Score=49.78 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=78.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
..-++..-+...|++++|.++|+.+.. .+..-|-.|..++...|++++|+..|....... +-|+..+-.+-.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334555666788999999999987764 356678889999999999999999999998865 3457788888888999
Q ss_pred cCCHHHHHHHHHHhHHhcCCcc
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p 469 (677)
.|+.+.|++.|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999998887644333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.054 Score=50.33 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CC--------cchHHHHHHHHHHcCChHHHHH
Q 037537 352 GKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HN--------TVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 352 ~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~ 421 (677)
.+.+|+.+...- ..-+++|+..|.-..-+++-...|+.-.. .. ...-+.++..+.-+|.+.-.+.
T Consensus 124 mR~lhAe~~~~l-----gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 124 MRILHAELQQYL-----GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred HHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHH
Confidence 344555544422 22346676666655555555555554332 12 2234567777777888888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH-----HHHHhhcCChHHHHHHHHh
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM-----IDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~ 496 (677)
++++.++..-+-++.-...+.+.-.+.|+.+.|..+|+...+. .-..+....+.+ ...|.-+.++.+|...+++
T Consensus 199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 199 AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 9999999765666777888888888999999999999977765 223333333333 3456667888889888888
Q ss_pred CCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 497 MPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 497 m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++ +.+|.++..-+.-.-+..-.|+..+|++....|++.-
T Consensus 278 i~---------------~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 278 IL---------------RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred cc---------------ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 85 5667777777766666667899999999999998753
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=53.44 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=80.2
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 037537 389 RRLFDRM--PEHNTVSLNSMIAGYAQH-----GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT------------- 448 (677)
Q Consensus 389 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 448 (677)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556665 457778888888888754 67777788899999999999999999999876542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCCh
Q 037537 449 ---GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 449 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 487 (677)
...+-|..+++.|... |+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 2356789999999886 9999999999999999988763
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.054 Score=57.98 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=94.6
Q ss_pred CCCCcchHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHh
Q 037537 396 PEHNTVSLNSMIAGYAQHG-----IGMEALRLFEWMLETNIPPT-NITFVSVLSACAHT--------GKVAEGQKYFSMM 461 (677)
Q Consensus 396 ~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~a~~~~~~m 461 (677)
...|...|...+.|..... ....|..+|++.++ ..|| ...+..+..++... .++..+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3457788888888865432 26689999999998 4677 34444433322211 1233444444443
Q ss_pred HHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH
Q 037537 462 KDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 462 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
........+...|..+.-.+...|++++|...++++ ++++| +..+|..++..|...|+.++|.+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA---------------l~L~p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA---------------IDLEM-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH---------------HHcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 332112335577877766677789999999999887 47777 57899999999999999999999
Q ss_pred HHHHHHhCC
Q 037537 542 IRRLMRDRG 550 (677)
Q Consensus 542 ~~~~m~~~g 550 (677)
.+++.....
T Consensus 475 ~~~~A~~L~ 483 (517)
T PRK10153 475 AYSTAFNLR 483 (517)
T ss_pred HHHHHHhcC
Confidence 999887654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.021 Score=51.49 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
...+..+...+...|++++|...|+..... ...| ...++..+..+|.+.|++++|.+.+++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A--------------- 98 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA--------------- 98 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Confidence 345666667777889999999999999864 2122 2357888899999999999999999876
Q ss_pred hccCCCCchhHHHHHHHHH-------hcCChHHHHHHHHHH
Q 037537 513 LQLEPSNAVPYVMLANIYA-------ASGKWEEVATIRRLM 546 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~-------~~g~~~~a~~~~~~m 546 (677)
++++|.+..++..+..+|. ..|++++|...+++.
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3556777788888888888 888888776666544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0051 Score=46.40 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=51.8
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
..|.+.+++++|.+.++.+ ++++|+++..|.....+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~---------------l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERA---------------LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHH---------------HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 5688999999999999987 57889999999999999999999999999999988654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.033 Score=53.24 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcC---ChHHHHHHHHhCCCCCChHHHHH
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG---KLTDAERLIEAMPFNPGSIALKA 508 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~ 508 (677)
+-|...|..|-.+|...|+.+.|..-|....+. -.++...+..+..++..+. ...++.++|+++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a----------- 219 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA----------- 219 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH-----------
Confidence 556788999999999999999999999888764 2234566666666554332 344555555544
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 509 ANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 509 ~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
+.++|.|..+...|...+...|++.+|...|+.|.+..-
T Consensus 220 ----l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 220 ----LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred ----HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999998763
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.99 Score=45.09 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS 348 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 348 (677)
+..+.-+...|. ...|.++-.+..-|+-.-|-..|.+++.. ++|++-..+... +-.++-|-.++.+|-..|
T Consensus 181 ~~Ti~~li~~~~-~k~A~kl~k~Fkv~dkrfw~lki~aLa~~-~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQ-EKQAEKLKKEFKVPDKRFWWLKIKALAEN-KDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 333455556677 88888888888888888888888888888 888866654321 222345555555554444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.06 Score=44.82 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=68.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHh
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLG 482 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 482 (677)
+..++-..|+.++|+.+|++....|.... ...+..+-+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677788999999999999999886655 35677788889999999999999999887621111 1222233445778
Q ss_pred hcCChHHHHHHHHhC
Q 037537 483 RAGKLTDAERLIEAM 497 (677)
Q Consensus 483 ~~g~~~~A~~~~~~m 497 (677)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 899999999887543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.012 Score=43.63 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=26.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..|++++|.++|+.+... .| +...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666665543 23 4445555666666666666666666655
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.3 Score=44.92 Aligned_cols=424 Identities=12% Similarity=0.119 Sum_probs=206.6
Q ss_pred HccCChHHHHHHHhhccc---cC------hhHHHHHHHHHHhcCChhHHHHHhccCCCC-CcchHHHHHHHH--HhCCCh
Q 037537 45 SKCGCLSAAHHAFNQTQH---AN------VFSFNVLLAAYARQLRIASARQLFDQIPQP-DLVSYNTLISAY--ADCGDT 112 (677)
Q Consensus 45 ~~~g~~~~a~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~ 112 (677)
.+++++.+|..+|.++.+ .+ ....+.++++|-.. +++.....+....+. ....|-.+..++ -+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 467788888888887776 22 23345677777543 344444444333331 134465555543 467889
Q ss_pred hHHHHHHHHhHhc--CCCCCcc--cHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 037537 113 ESALSLFKDMREK--RFDTDGF--TLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFY 188 (677)
Q Consensus 113 ~~A~~~~~~m~~~--g~~p~~~--t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 188 (677)
.+|++.+..-.+. +.+|.-. -+.-+ -+|-..-+..++.+...|++.+++.+++
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l-----------------------~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQL-----------------------FSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHH-----------------------hhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 9999888777654 3222100 00000 1223333555666667777777777777
Q ss_pred hc-------CCCCCeeeHHHHHHHHHhC--------CC-------chHHHHHHHHHHHC------CCCCCHhHHHHHHHH
Q 037537 189 EM-------GEIKDEVSWNSMVVAYGQH--------RE-------GLEALQLFQEMVSL------QLGLDMYTLASILTA 240 (677)
Q Consensus 189 ~m-------~~~~~~~~~~~li~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a 240 (677)
++ ...-++.+||.++-.+.++ .. ++-++-...+|... .+.|...-+..++..
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHH
Confidence 66 1123555566533333221 11 11222222233221 133444444444443
Q ss_pred HccC--CChHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHcCCCHHHHHHHHhhCC--------CCChhhHHHHHhhhc
Q 037537 241 FTSL--EDLVGGLQFHAHLIKSGFHQNSH-IGSGLIDLYAKCSGDMRDCMKVFEEIP--------QPDLVLWNTMISGYS 309 (677)
Q Consensus 241 ~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~~A~~~f~~~~--------~~~~~~~~~li~~~~ 309 (677)
..-. ..+.--.+++......-+.|+.. +...|+.-+.+ + .+++..+-+.+. +.=+.++..++...+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~-~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~V 309 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--D-PEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKV 309 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--C-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3221 23333444444444444455432 44455555554 2 444444433321 233345666666666
Q ss_pred ccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc----CCH
Q 037537 310 QKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC----GNL 385 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~ 385 (677)
+. ++..+|-+.+.-+.- +.|+.. +. ... ...-.+|.++.+.- -++
T Consensus 310 k~-~~T~~a~q~l~lL~~--ldp~~s-vs------------------~Kl---------lls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 310 KQ-VQTEEAKQYLALLKI--LDPRIS-VS------------------EKL---------LLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HH-HhHHHHHHHHHHHHh--cCCcch-hh------------------hhh---------hcCHHHHHHHHhcchHHHHHH
Confidence 66 666666665554443 233321 10 000 00011222222210 011
Q ss_pred HHHHHHHhcCCCCCcch---HHHHH---HHHHHcCC-hHHHHHHHHHHHHCCCCCC-HHH----HHHHHHHHhc---cCC
Q 037537 386 EDARRLFDRMPEHNTVS---LNSMI---AGYAQHGI-GMEALRLFEWMLETNIPPT-NIT----FVSVLSACAH---TGK 450 (677)
Q Consensus 386 ~~A~~~~~~~~~~~~~~---~~~li---~~~~~~g~-~~~A~~l~~~m~~~g~~p~-~~t----~~~ll~a~~~---~g~ 450 (677)
.+=..+++.....|+.. -.-|+ .-+-+.|. -++|+++++..++ +.|. ... +..+=.+|.+ ...
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22223333333333221 11122 22444555 6788888888887 3443 222 2222223322 233
Q ss_pred HHHHHHHHHHhHHhcCCccC----hHHHHHHHHH--HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 451 VAEGQKYFSMMKDMFGFEPE----GEHYSCMIDL--LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
+.+-..+-+-+.+. |+.|- .+.-|+|.|+ +-..|++.++.-.-.- +.++.| ++.+|.
T Consensus 437 ~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W---------------L~~iaP-S~~~~R 499 (549)
T PF07079_consen 437 IPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW---------------LTKIAP-SPQAYR 499 (549)
T ss_pred HHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH---------------HHHhCC-cHHHHH
Confidence 44444444444444 88774 3455666554 4456777666544332 235566 778899
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 037537 525 MLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~ 545 (677)
.++-......++++|..++..
T Consensus 500 LlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 500 LLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhhHHHHHHHHHh
Confidence 999999999999999999876
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=43.01 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=48.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 477 (677)
.+.|++++|+++|+++.+.. +-|......+..++.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 46788999999999998853 335677778888999999999999999998865 6664444433
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=2 Score=46.34 Aligned_cols=298 Identities=14% Similarity=0.040 Sum_probs=165.8
Q ss_pred hhHHHHHHHHHHhcCC---hhHHHHHHhhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC----CCCHhHH
Q 037537 164 ASVNNSLLTCYSRNGF---LDEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL----GLDMYTL 234 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~ 234 (677)
..++.....-+.+..+ -+-+.++=+++ .. ...++|..+.+-..+.|+.+-|..+++.=...+- -.+..-+
T Consensus 471 ~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~ 549 (829)
T KOG2280|consen 471 DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDS 549 (829)
T ss_pred cHHHHHHHHHHHhccCccchHHHHHHHHHh-cccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchH
Confidence 4566666666666532 23334444444 22 4667888888888888999888887754322221 1133345
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcccCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~~~ 313 (677)
...+.-+...|+.+...+++-++.+.- +...+ .+-. .+ ...|..++.+... .|..+ +-..|- . +
T Consensus 550 ~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l----~~~l--~~-~p~a~~lY~~~~r~~~~~~---l~d~y~-q-~ 614 (829)
T KOG2280|consen 550 SLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL----FMTL--RN-QPLALSLYRQFMRHQDRAT---LYDFYN-Q-D 614 (829)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH----HHHH--Hh-chhhhHHHHHHHHhhchhh---hhhhhh-c-c
Confidence 556666777777777777666655431 00000 0000 11 3334444443321 11110 111111 1 2
Q ss_pred CHHHHHHHHHHH------hhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHH---H--------HHhhcccCccchhHHH
Q 037537 314 YSDQALGCFKKL------NRVGYHPDDCSFVCVISACSNLS-PSLGKQIHAL---T--------IKIEIRSNRISVNNAL 375 (677)
Q Consensus 314 ~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~---~--------~~~~~~~~~~~~~~~l 375 (677)
+..+++.-|..= ...|..|+. ...-++|++.. ...+.+..+. . .+.|.... --..+--
T Consensus 615 dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~-dlSl~dT 690 (829)
T KOG2280|consen 615 DNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFV-DLSLHDT 690 (829)
T ss_pred cchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc-cCcHHHH
Confidence 222222222110 012333332 22333444433 2211111111 1 11122122 1222344
Q ss_pred HHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+ ++ ++-|.-+..+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk-----ks-PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK-----KS-PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CC-CCCchhHHHHHHhcccHHHHh
Confidence 555667899999999999999899998988899999999998766655443 22 677888999999999999999
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.++.+.. |.. -.+.+|.+.|++.+|.++--+-
T Consensus 765 KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 765 KYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHHh
Confidence 9987653 221 4678999999999998876554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.24 Score=48.93 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhC-CCchHHHHHHHHHHHC----CCCCC--HhHHHHHHHH
Q 037537 168 NSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQH-REGLEALQLFQEMVSL----QLGLD--MYTLASILTA 240 (677)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~pd--~~t~~~ll~a 240 (677)
...+..|...|++..|-+++..+ ...|-.. |++++|++.|++..+. | .+. ...+..+...
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 44456788888888887777766 4456566 7888898888877542 3 121 2345566677
Q ss_pred HccCCChHHHHHHHHHHHHhCCCCch-------hhHHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 037537 241 FTSLEDLVGGLQFHAHLIKSGFHQNS-------HIGSGLIDLYAKCSGDMRDCMKVFEEIPQ 295 (677)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~~A~~~f~~~~~ 295 (677)
+.+.|++++|.++++.+.......+. ....++| .+...|+ ...|.+.|++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D-~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGD-YVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT--HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCC-HHHHHHHHHHHHh
Confidence 78888888888888888765432221 1223333 3334477 8888888877543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.23 E-value=2.3 Score=45.95 Aligned_cols=120 Identities=11% Similarity=-0.058 Sum_probs=75.9
Q ss_pred HcCCCCChhhHHH-----HHHHHHccCChHHHHHHHhhccccC---hhHHHHHHHHHHhcC---ChhHHHHHhccCCC--
Q 037537 27 KNLVPFSAYLSNH-----FILLYSKCGCLSAAHHAFNQTQHAN---VFSFNVLLAAYARQL---RIASARQLFDQIPQ-- 93 (677)
Q Consensus 27 ~~~~~~~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g---~~~~A~~~f~~m~~-- 93 (677)
+.|++.+..-|.. +++-+...+.+..|.++-..+..|. ..++.....-+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3456655555544 4666778888999999888877755 566777777776663 23334444444544
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCC----CCcccHHHHHHHhhcchh
Q 037537 94 PDLVSYNTLISAYADCGDTESALSLFKDMREKRFD----TDGFTLSGLITASSNNLC 146 (677)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~~~ 146 (677)
...++|..+.+---+.|+++-|..+++.=...+-. .+..-+...|.-+...++
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d 561 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGD 561 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCC
Confidence 56788999988888999999999888743222211 122234445555555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.8 Score=43.98 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 477 (677)
..+|++.++.-.-....+ +.|++.+|..+.-......++++|..++.. ++|+..++++=
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~dsk 531 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDSK 531 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHHH
Confidence 346777776655555554 677777777766666667777777777653 35666665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.12 E-value=2.9 Score=46.17 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=68.5
Q ss_pred ccCChHHHHHHHhhccc--cChhHHHHHHHHH--HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 037537 46 KCGCLSAAHHAFNQTQH--ANVFSFNVLLAAY--ARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSL 118 (677)
Q Consensus 46 ~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 118 (677)
..+++..|.+-...+.+ |+. .|...+.++ .+.|+.++|..+++.... .|..|...+-..|...++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 44567777777777666 443 344455554 578999999988887654 4778888999999999999999999
Q ss_pred HHHhHhcCCCCCcccHHHHHHHhhcchh
Q 037537 119 FKDMREKRFDTDGFTLSGLITASSNNLC 146 (677)
Q Consensus 119 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 146 (677)
|++.... .|+..-...++.++.+..+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHH
Confidence 9988754 4554444444444444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.11 Score=55.58 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=84.1
Q ss_pred cchhHHHHHHHHc--c---CCHHHHHHHHhcCCC--CC-cchHHHHHHHHHHcC--------ChHHHHHHHHHHHHCC-C
Q 037537 369 ISVNNALVAMYSK--C---GNLEDARRLFDRMPE--HN-TVSLNSMIAGYAQHG--------IGMEALRLFEWMLETN-I 431 (677)
Q Consensus 369 ~~~~~~li~~y~k--~---g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g-~ 431 (677)
...|...+.+... . +..+.|..+|++..+ |+ ...|..+..+|.... +...+.+...+..... .
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 5666666655433 2 236788888888765 43 234554444443321 1233444444433321 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+...+..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334567777666666789999999999999864 688889999999999999999999999876
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.03 Score=40.98 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
...+.+.|++++|++.|++.++.. +-+...+..+...+...|++++|..+|+.+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666666666666666643 223455666666666666666666666666543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.04 Score=52.47 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 454 (677)
..+.+++++|...|.+..+ .|.+-|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|-.++...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 4578999999999998765 5788899999999999999999999999888 5666 57999999999999999999
Q ss_pred HHHHHHhHHhcCCccChHHHHH
Q 037537 455 QKYFSMMKDMFGFEPEGEHYSC 476 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~ 476 (677)
.+.|++.. .+.|+-.+|-.
T Consensus 169 ~~aykKaL---eldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKAL---ELDPDNESYKS 187 (304)
T ss_pred HHHHHhhh---ccCCCcHHHHH
Confidence 99999887 57999887754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.09 Score=46.01 Aligned_cols=67 Identities=25% Similarity=0.414 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR----- 547 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~----- 547 (677)
....++..+...|++++|.++.+++ +..+|-|...|..++.+|...|+..+|.+++++++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~---------------l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRA---------------LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH---------------HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHH---------------HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999998876 68899999999999999999999999999998874
Q ss_pred hCCCccC
Q 037537 548 DRGVQKK 554 (677)
Q Consensus 548 ~~g~~~~ 554 (677)
+.|+.|.
T Consensus 129 elg~~Ps 135 (146)
T PF03704_consen 129 ELGIEPS 135 (146)
T ss_dssp HHS----
T ss_pred HhCcCcC
Confidence 4566654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.034 Score=41.23 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=47.2
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-KVAEGQKYFSMMKD 463 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 463 (677)
+...|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777888888888888888888888743 223567777777777787 68888888877765
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.15 Score=42.54 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhHHHHHHHHHccCCChHHHHHHHHHHHHh
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLD--MYTLASILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
+..++-..|+.++|+.+|++....|+..+ ...+..+-+++...|++++|..+++.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456667888888888888877776544 334555666677777777777777776654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.56 Score=49.37 Aligned_cols=78 Identities=19% Similarity=0.134 Sum_probs=50.1
Q ss_pred HHHHHhcCCChHHHH--HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChh
Q 037537 5 VLKTCVGRRDLVTGK--SLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 5 ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (677)
.=++|.+.++..-.. .-++.+.+.|-.|+... +...|+-.|.+.+|-++|.+--. -|..+.+|.....++
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~-----enRAlEmyTDlRMFD 675 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH-----ENRALEMYTDLRMFD 675 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc-----hhhHHHHHHHHHHHH
Confidence 335666666655433 34566777776676654 44567788999999999875443 245566666666677
Q ss_pred HHHHHhcc
Q 037537 83 SARQLFDQ 90 (677)
Q Consensus 83 ~A~~~f~~ 90 (677)
.|.++...
T Consensus 676 ~aQE~~~~ 683 (1081)
T KOG1538|consen 676 YAQEFLGS 683 (1081)
T ss_pred HHHHHhhc
Confidence 77666544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.11 Score=43.65 Aligned_cols=95 Identities=9% Similarity=0.230 Sum_probs=65.5
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
.++.+++-++++.|+++....+.+..-..|+. +-...+. --......|+..++.+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 45566667777777777766666554221110 0000000 1112346799999999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 450 KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 450 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
++..|.++.+...+.|+++-+..+|..|+.=
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999988888889888763
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.77 Score=45.89 Aligned_cols=149 Identities=16% Similarity=0.156 Sum_probs=95.2
Q ss_pred ccCCHHHHHHHHhcCCCCCcc-hHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH---H----------HH
Q 037537 381 KCGNLEDARRLFDRMPEHNTV-SLNSMIAG--YAQHGIGMEALRLFEWMLETNIPPTNITFVSV---L----------SA 444 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l----------~a 444 (677)
-.|+.++|.++--.+.+-|.+ .+...+++ +-..++.+.|...|++.+.. .|+...-... . +-
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 345555555554444433222 22222322 23355667777777776663 4554322221 1 22
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
..+.|.+..|.+.+.+.+ ++.|+ ...|........|.|++.+|+.--++. +.++|.-
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A---------------l~iD~sy 320 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA---------------LKIDSSY 320 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh---------------hhcCHHH
Confidence 346788999999888877 45554 445666666778899999998877665 4666666
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...|..-.+++...++|++|.+-+++..+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777888889999999999999887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.94 Score=43.42 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=98.2
Q ss_pred hcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHH
Q 037537 308 YSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLED 387 (677)
Q Consensus 308 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 387 (677)
+.+. |++++|.+.|+++... .|+.... ....-.+..+|.+.+++++
T Consensus 42 ~~~~-g~y~~Ai~~f~~l~~~--yP~s~~a-------------------------------~~a~l~la~ayy~~~~y~~ 87 (243)
T PRK10866 42 KLQD-GNWKQAITQLEALDNR--YPFGPYS-------------------------------QQVQLDLIYAYYKNADLPL 87 (243)
T ss_pred HHHC-CCHHHHHHHHHHHHHh--CCCChHH-------------------------------HHHHHHHHHHHHhcCCHHH
Confidence 3445 7788888888887763 3443211 2222355666777777777
Q ss_pred HHHHHhcCCC--C--CcchHHHHHHHHHH--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037537 388 ARRLFDRMPE--H--NTVSLNSMIAGYAQ--HG---------------I---GMEALRLFEWMLETNIPPTNITFVSVLS 443 (677)
Q Consensus 388 A~~~~~~~~~--~--~~~~~~~li~~~~~--~g---------------~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 443 (677)
|...|++..+ | .-+-|...+.|.+. .+ + ..+|++.|++.++
T Consensus 88 A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--------------- 152 (243)
T PRK10866 88 AQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--------------- 152 (243)
T ss_pred HHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------
Confidence 7777776643 2 11223333333321 11 1 1234444444444
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC-CChHHHHHHHHHhccCCCCchh
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN-PGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
-+=.+.-.++|...+..+... -..+--.+...|.+.|.+.-|..-++.+..+ |+. |....+
T Consensus 153 ~yP~S~ya~~A~~rl~~l~~~-----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-------------~~~~ea 214 (243)
T PRK10866 153 GYPNSQYTTDATKRLVFLKDR-----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-------------QATRDA 214 (243)
T ss_pred HCcCChhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-------------chHHHH
Confidence 333334455565555554432 1122335567788899988887777766311 222 234567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
...|..+|...|..++|.++.+...
T Consensus 215 l~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 215 LPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8889999999999999988877654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.17 Score=48.97 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh----HHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHH
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG----EHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANH 511 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~ 511 (677)
.|...+......|++++|...|+.+.+. .|+. ..+--+..+|...|++++|...|+.+.. -|+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 3444444445567777777777777765 3332 3555677778888888888888877621 111
Q ss_pred HhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 512 FLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 512 l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.|..+.++..++.+|...|++++|.+++++..+.
T Consensus 213 ----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 ----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1334556666777888888888888888877653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.1 Score=42.94 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=94.3
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCCCee-e---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc--C
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIKDEV-S---WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS--L 244 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~--~ 244 (677)
..+.+.|++++|.+.|+++ ...|+.. . .-.+..++.+.+++++|...|++..+.-..-....+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 3445678899999999888 2233322 1 234557778889999999999888875433233344444444321 0
Q ss_pred ---------------CChH---HHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHh
Q 037537 245 ---------------EDLV---GGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMIS 306 (677)
Q Consensus 245 ---------------~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~ 306 (677)
.|.. .|.+.++.+++. |-...- ..+|...+..+...-...--.+..
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~y-a~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQY-TTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 233334444333 222122 333333333322111111112344
Q ss_pred hhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 307 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
-|.+. |.+..|..-|+.+.+. -|+.... ......++.+|.+.|..+
T Consensus 184 ~Y~~~-~~y~AA~~r~~~v~~~--Yp~t~~~-------------------------------~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 184 YYTKR-GAYVAVVNRVEQMLRD--YPDTQAT-------------------------------RDALPLMENAYRQLQLNA 229 (243)
T ss_pred HHHHc-CchHHHHHHHHHHHHH--CCCCchH-------------------------------HHHHHHHHHHHHHcCChH
Confidence 46677 8888888888888764 3443222 445566777788888888
Q ss_pred HHHHHHhc
Q 037537 387 DARRLFDR 394 (677)
Q Consensus 387 ~A~~~~~~ 394 (677)
+|..+...
T Consensus 230 ~a~~~~~~ 237 (243)
T PRK10866 230 QADKVAKI 237 (243)
T ss_pred HHHHHHHH
Confidence 87776543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.25 Score=47.77 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN----ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCM 477 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 477 (677)
|+.-+..+.+.|++++|+..|+.+++. .|+. ..+.-+..++...|++++|...|+.+.+.|.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445567788888888887774 3443 35566667777788888888888888765333222 3444455
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 037537 478 IDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m 497 (677)
...|.+.|+.++|.+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66677778888888887765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.026 Score=37.45 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHH
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLAN 528 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~ 528 (677)
..+..+...|.+.|++++|.+++++. ++.+|+|+..|..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~---------------l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA---------------LALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCcCCHHHHHHhhh
Confidence 45778899999999999999999987 5788999988887753
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.032 Score=42.60 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 471 GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
..+|+.+...|.+.|++++|++.+++... ..+..-.-.|.-..++..++.+|...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALD--------IEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--------HHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45688889999999999999999987621 10011011122356789999999999999999999987643
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.18 Score=44.17 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCccChHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD----MFGFEPEGEH 473 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 473 (677)
..++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+.+ ..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566666666666666666643 44556666667777777777766666665532 3466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.27 Score=45.87 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=97.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHH-----H
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLA-----A 74 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~-----~ 74 (677)
.++......+.+...+.++..+++...+.++.....|.++-.+.|+.+.|...|+...+ -|...++.++. .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 45556666777888888899999888788899999999999999999999999997776 33333333333 4
Q ss_pred HHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHH
Q 037537 75 YARQLRIASARQLFDQIPQP---DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLI 138 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 138 (677)
|.-++++.+|.+.|++++.. |.+.-|.=.-...-.|+..+|++..+.|.+. .|.+.+-.+++
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 55678899999999998863 4444454333444468999999999999875 56666655444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.079 Score=54.01 Aligned_cols=65 Identities=22% Similarity=0.112 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch---hHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV---PYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+...++.+..+|.+.|++++|...|++. ++++|++.. +|..+..+|+..|+.++|+..+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rA---------------LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETA---------------LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678888999999999999999999876 578888874 5999999999999999999999999
Q ss_pred HhC
Q 037537 547 RDR 549 (677)
Q Consensus 547 ~~~ 549 (677)
.+.
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 885
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.5 Score=38.40 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchh
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
-+.+.|++++|..+|.-+..- .| +..-+..|...+-..|++++|...+... ..++++|+..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A---------------~~l~~~dp~p 107 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVA---------------FTLLKNDYRP 107 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHcccCCCCc
Confidence 345889999999999988753 33 4555677888888899999999999865 2455678888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+.-....|...|+.+.|...|....+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999988766
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.21 Score=46.99 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=84.5
Q ss_pred HHHHHhcCC--CCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------
Q 037537 388 ARRLFDRMP--EHNTVSLNSMIAGYAQH-----GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK---------- 450 (677)
Q Consensus 388 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 450 (677)
.++.|.... ++|-.+|-+++..+..+ +.++=....++.|.+.|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 67888999999888754 5566677788999999999999999999987765432
Q ss_pred ------HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChH-HHHHHHHhC
Q 037537 451 ------VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLT-DAERLIEAM 497 (677)
Q Consensus 451 ------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 497 (677)
-+-+..+++.|... |+.||.++-..|+++++|.|..- +..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 24478899999876 99999999999999999998643 333443334
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.22 Score=37.26 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=31.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.|.+.+++++|++.++.++..+ +.+...+......+...|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666542 223444555555556666666666666666543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.44 Score=44.95 Aligned_cols=100 Identities=13% Similarity=0.187 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHH
Q 037537 245 EDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKK 324 (677)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~ 324 (677)
+.++-....+..|.+.|++.|..+|+.|++.+-| |. + .|. ..+....-.|- .+-+-+++++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-gk-f-----------iP~-nvfQ~~F~HYP---~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-GK-F-----------IPQ-NVFQKVFLHYP---QQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-cc-c-----------ccH-HHHHHHHhhCc---hhhhHHHHHHHH
Confidence 4455555566778888888899999998888877 33 1 011 11112222333 234679999999
Q ss_pred HhhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHH
Q 037537 325 LNRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIK 361 (677)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~ 361 (677)
|...|+.||..+-..+++++.+.+ ......+.-++-+
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 999999999999999999999988 6666666666655
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.47 Score=47.18 Aligned_cols=138 Identities=11% Similarity=0.048 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCc-----cC
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWML----ETNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE-----PE 470 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----p~ 470 (677)
..|..|...|.-.|+++.|+..-+.=+ +-|-+. ....+..+.+++.-.|.++.|.+.++..... .++ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L-Aielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL-AIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH-HHHhcchhHH
Confidence 356666666777788888887655432 233222 2346777788888888999988887765432 111 22
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 471 GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
....-+|.+.|.-...++.|+.++.+-. .+++.+-.. -....++++|.++|...|..+.|+.....-.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHL--------aIAqeL~Dr-iGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHL--------AIAQELEDR-IGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHh-hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445567777777778888888876531 111111111 12346799999999999999999887766544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=5.7 Score=39.68 Aligned_cols=209 Identities=11% Similarity=0.095 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcC-CCCCcc--hHHHHHHHhhcc--C--h
Q 037537 280 SGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVG-YHPDDC--SFVCVISACSNL--S--P 349 (677)
Q Consensus 280 g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~--~--~ 349 (677)
|. -+.|+..-+..-. | -.-.|.+.+...+.. |+++.|+++.+.-.... +.+|.. .-..+|.+-+.. . .
T Consensus 168 Ga-reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 168 GA-REAARHYAERAAEKAPQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cc-HHHHHHHHHHHHhhccCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 44 4555444443321 2 223566677777777 77777777776655432 334432 122333332221 1 2
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLE- 428 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 428 (677)
..++..-.. ...+.|+.+...-.-...|.+.|++.++-.+++.+-+..+..--..+..+++.|+ .++.=+++..+
T Consensus 246 ~~Ar~~A~~--a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALE--ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHH--HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHH
Confidence 222222222 2344555334444456788999999999999998865333222223333445554 45554554433
Q ss_pred CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHh-hcCChHHHHHHHHhC
Q 037537 429 TNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLG-RAGKLTDAERLIEAM 497 (677)
Q Consensus 429 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 497 (677)
..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-. ..|+-.++...+-+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 225666 5677788888889999998888777665 45899999998888764 449999999998765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.50 E-value=3.3 Score=36.85 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=98.8
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 477 (677)
|.+..--.|..+....|+..||...|++...--+.-|......+.++....++..+|...++.+.+..--.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444556888999999999999999999886667788899999999999999999999999988652111124445566
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 478 IDLLGRAGKLTDAERLIEAMP-FNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
...|...|+.++|+.-|+... .-| ++..-......+++.|+.+++..-+....+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~yp-----------------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYP-----------------GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 788999999999999988652 122 234444555667888988877665554433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.61 Score=46.69 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
..+..+.-.|.+.+++.+|++..++. |+++|+|..+..--..+|+..|+++.|...|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kv---------------Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKV---------------LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL-- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHH---------------HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--
Confidence 35666777788999999888876654 7999999999999999999999999999999999874
Q ss_pred ccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Q 037537 552 QKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQ 595 (677)
Q Consensus 552 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 595 (677)
.|..++|...|..+.+++++
T Consensus 321 ------------------------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ------------------------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ------------------------CCCcHHHHHHHHHHHHHHHH
Confidence 25567788888888877765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.99 Score=43.46 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=50.0
Q ss_pred cCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHH
Q 037537 366 SNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHG---IGMEALRLFEWMLETNIPPTNITFV 439 (677)
Q Consensus 366 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~ 439 (677)
|++..-|-.|...|...|+.+.|...|.+..+ +|+..+..+..++..+. ...++..+|++++... +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 33355556666666666666666666654433 34444444444443322 2345556666665532 22233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHH
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444455556666666666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.2 Score=38.10 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CC-ccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMF---GF-EPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++.+...+...|++++|+.+|++..+.. |- .|+ ..++..+...|.+.|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555556666666666665555321 11 122 456677777888888888888887754
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.35 Score=40.75 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=21.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhH
Q 037537 95 DLVSYNTLISAYADCGDTESALSLFKDMR 123 (677)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (677)
|..++.++|.++++.|+.+....+++..-
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W 29 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW 29 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 34567778888888888888887776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=13 Score=41.02 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=76.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HccCChHHHHHHHhhccc-cChhHHHHHHHHHHhcCC
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLY----SKCGCLSAAHHAFNQTQH-ANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~ 80 (677)
|........++.|..+- .+.+ .+......+...| -+.|++++|..-+=+.+. .++ ..++.-|....+
T Consensus 341 L~iL~kK~ly~~Ai~LA---k~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLA---KSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHhhhHHHHHHHH---HhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHH
Confidence 33344444555555432 2233 3344444444444 467888888876655443 111 123333333333
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHH
Q 037537 81 IASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIY 157 (677)
Q Consensus 81 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~ 157 (677)
+.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.- .+-+-..+.-|.+.+-.... .-.+.+
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a-~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA-ELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH-HHHHHH
Confidence 3333344444332 233344566777777777766655554433 2211 11122233333222220000 001111
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM 190 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 190 (677)
. ..+..+...+ +-..+++++|.+.+..+
T Consensus 489 ~--~~he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 F--KKHEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred h--ccCHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 1 1233333333 34568899999999998
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.2 Score=46.69 Aligned_cols=158 Identities=17% Similarity=0.086 Sum_probs=95.8
Q ss_pred HHHhcCCChHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHH
Q 037537 7 KTCVGRRDLVTGKSLHAL-YLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASAR 85 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 85 (677)
+...-+++++.+.+..+. -+-.. .+....+.++..+-+.|..+.|.++-. |+ ..-.....++|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN--IPKDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhccc--CChhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHH
Confidence 445556777776555531 11111 225558888888888898888887754 22 23345666889999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChh
Q 037537 86 QLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYAS 165 (677)
Q Consensus 86 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~ 165 (677)
++-++.. +...|..|.....+.|+++-|.+.|.+...-
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------------------------------- 376 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------------------------------- 376 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------------------------------
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------------------------------
Confidence 8876665 5568999999999999999999988876532
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQE 221 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 221 (677)
..|+-.|.-.|+.+.-.++-+.. ... .-+|....++.-.|+.++..+++.+
T Consensus 377 --~~L~lLy~~~g~~~~L~kl~~~a-~~~--~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 377 --SGLLLLYSSTGDREKLSKLAKIA-EER--GDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHCT-HHHHHHHHHHH-HHT--T-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --cccHHHHHHhCCHHHHHHHHHHH-HHc--cCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666777766666665544 111 1256666666666777777766644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.2 Score=46.74 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=96.3
Q ss_pred HHhcCChhHHHHHhc--cC-CCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHH
Q 037537 75 YARQLRIASARQLFD--QI-PQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQL 151 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~--~m-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i 151 (677)
..-.++++++.+... ++ +.-...-.+.+++.+-+.|.++.|+++-.+-.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------------------- 322 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD---------------------------- 322 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------------------------
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------------------------
Confidence 344577777444332 11 11123447888888888999999988855432
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 037537 152 HCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM 231 (677)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 231 (677)
.-.+...++|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+...
T Consensus 323 -----------------~rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------- 375 (443)
T PF04053_consen 323 -----------------HRFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD------- 375 (443)
T ss_dssp -----------------HHHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------
T ss_pred -----------------HHhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------
Confidence 2235567889999999888777 4666899999999999999999999887754
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 232 YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
|..++-.+...|+.+.-.++.......|- +|....++.-.|+ +++..+++.+-
T Consensus 376 --~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd-~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 --FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGD-VEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT--HHHHHHHHHHT
T ss_pred --ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCC-HHHHHHHHHHc
Confidence 55555566677777777777766666551 3333334444466 77776666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.63 E-value=5 Score=35.76 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=58.3
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHh
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACA 446 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 446 (677)
.|.....+.|+..+|...|++... .|....-.+..+....+++.+|..+++.+.+.. |+ +.+-..+...+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHH
Confidence 344555556666666666655432 344444445555555566666666666655532 21 123334445555
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAE 491 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (677)
..|...+|+..|+....- -|+...-.-....+.+.|+.++|.
T Consensus 172 a~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 172 AQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 566666666666666543 344443333344555566555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.26 Score=43.00 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=59.7
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 454 (677)
-+-..|++++|..+|.-+.- -|..-|..|..++-..+++++|+.+|......+ .-|+..+-.....+...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34467888888888876543 355567777777788888888888887776644 34444555566667778888888
Q ss_pred HHHHHHhHH
Q 037537 455 QKYFSMMKD 463 (677)
Q Consensus 455 ~~~~~~m~~ 463 (677)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=8.4 Score=37.82 Aligned_cols=245 Identities=10% Similarity=-0.003 Sum_probs=115.9
Q ss_pred HHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHhHhcCCCCCc
Q 037537 56 AFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDT----ESALSLFKDMREKRFDTDG 131 (677)
Q Consensus 56 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~ 131 (677)
+...+..+|..+....+..+...|..+-...+......+|...-...+.++.+.|+. ++++.++..+... .|+.
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 333344466666666777777766544444444434456666666667777777764 4566666666332 2333
Q ss_pred ccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCC
Q 037537 132 FTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHRE 211 (677)
Q Consensus 132 ~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~ 211 (677)
..-...+.+.+..+.... . ....+...+...-..++...--..+.++.+.++
T Consensus 106 ~VR~~A~~aLG~~~~~~~-----------~-----------------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 106 CVRASAINATGHRCKKNP-----------L-----------------YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred HHHHHHHHHHhccccccc-----------c-----------------cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 333333333322211000 0 011122222221122233333344444444443
Q ss_pred chHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCC-ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHH
Q 037537 212 GLEALQLFQEMVSLQLGLDMYTLASILTAFTSLE-DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVF 290 (677)
Q Consensus 212 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f 290 (677)
.+|+..+..+... +|...-...+.+++..+ +-..+...+..+. -.++..+....+.++++.+. ..-...+.
T Consensus 158 -~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~-~~av~~Li 229 (280)
T PRK09687 158 -EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKD-KRVLSVLI 229 (280)
T ss_pred -HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCC-hhHHHHHH
Confidence 3455555554432 33334444444444432 1223333333333 24566666666666666665 43333333
Q ss_pred hhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHh
Q 037537 291 EEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISAC 344 (677)
Q Consensus 291 ~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 344 (677)
+.+..++ ..-..+.++... |. .+|+..+..+.+. .||...-...+.+|
T Consensus 230 ~~L~~~~--~~~~a~~ALg~i-g~-~~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGEL-GD-KTLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhc-CC-HhHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4433333 233556666666 66 4677777777753 34555544444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.38 E-value=8.7 Score=37.77 Aligned_cols=122 Identities=14% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHH-HH----HHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGY---AQHGIGMEALRLFEWMLETNIPPTNI-TF----VSVL 442 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----~~ll 442 (677)
--+..+.+.++.+++.+++.+|... ....+...+..+ .. .....|...++.++...+.|... .. ...+
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~ 204 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRV 204 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3344444567777777777776541 234555555554 33 33467777777777665666553 11 1111
Q ss_pred HHHhccC------CHHHHHHHHHHhHHhcCCccChHHHHHHHHH-------HhhcCChHHHHHHHHh
Q 037537 443 SACAHTG------KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL-------LGRAGKLTDAERLIEA 496 (677)
Q Consensus 443 ~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-------~~~~g~~~~A~~~~~~ 496 (677)
-.....+ .++....+++.+.+..+.+.+..+-.++... ..+++++++|.++++-
T Consensus 205 ~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 205 LLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 1222222 2555666666555544445555554444433 4577899999999873
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.33 E-value=11 Score=38.62 Aligned_cols=124 Identities=22% Similarity=0.227 Sum_probs=94.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVL 442 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 442 (677)
..++..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--... -||. .-..-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 56778888888888889999999988765 57788899988666 46677888888875553 3453 3344566
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 443 SACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 443 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.-+...++-+.|+.+|+..+++ +..+ ...|..+|+-=..-|++..|..+=+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 6677889999999999977764 4444 678999999888889988887776665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.3 Score=41.22 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=73.6
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCC----CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc---
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIK----DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS--- 243 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~--- 243 (677)
..+...|++++|.+.|+.+ ...| -..+.-.++.++.+.|++++|...|++..+.-..-....+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3455678999999999988 1112 2234556778888999999999999998775322222223333322211
Q ss_pred -------C---CChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCC
Q 037537 244 -------L---EDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 244 -------~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~ 313 (677)
. +....|...+..+++. |=...- ..+|...+..+.+.=...--.+..-|.+. |
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y-~~~A~~~l~~l~~~la~~e~~ia~~Y~~~-~ 155 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEY-AEEAKKRLAELRNRLAEHELYIARFYYKR-G 155 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred CccchhcccChHHHHHHHHHHHHHHHH---------------CcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence 1 1122333333333332 222222 44444333333211111111234556777 8
Q ss_pred CHHHHHHHHHHHhhcCCCCCc
Q 037537 314 YSDQALGCFKKLNRVGYHPDD 334 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~ 334 (677)
.+..|..-|+.+.+. -|+.
T Consensus 156 ~y~aA~~r~~~v~~~--yp~t 174 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN--YPDT 174 (203)
T ss_dssp -HHHHHHHHHHHHHH--STTS
T ss_pred cHHHHHHHHHHHHHH--CCCC
Confidence 888888888888875 4554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.23 E-value=3 Score=36.01 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
..++..+.+.+........++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 4556666666666666666665543 23446777777777664 3444444442 233444555677777777
Q ss_pred CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc-CChHHHHHHHHh
Q 037537 450 KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA-GKLTDAERLIEA 496 (677)
Q Consensus 450 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 496 (677)
.++++..++..+.. +...++.+... ++.+.|.+++.+
T Consensus 84 l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 77777777665521 22233333333 677777777765
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.22 E-value=8.4 Score=38.08 Aligned_cols=150 Identities=11% Similarity=0.185 Sum_probs=86.9
Q ss_pred hhhHHHHHhhhcc-cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 298 LVLWNTMISGYSQ-KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 298 ~~~~~~li~~~~~-~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
..++.+++..... -...+++.+.+++.|.+.|++-+..+|.+.+....... .. -
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~-----------------~~---~----- 114 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE-----------------KE---D----- 114 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc-----------------cc---c-----
Confidence 3444444444332 11234567788889999999888887754332221100 00 0
Q ss_pred HHHHccCCHHHHHHHHhcCCC-------CCcchHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPE-------HNTVSLNSMIAGYAQHGI----GMEALRLFEWMLETNIPPTN--ITFVSVLS 443 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~--~t~~~ll~ 443 (677)
..-...+|..+|+.|.+ ++-.++.+|+.. ..++ .+.+...|+.+.+.|+..+. .....+|.
T Consensus 115 ----~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLa 188 (297)
T PF13170_consen 115 ----YDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILA 188 (297)
T ss_pred ----HHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 00124556677777764 233445555443 2222 35677888888888877653 34444554
Q ss_pred HHhccCC--HHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 444 ACAHTGK--VAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 444 a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
.+..... +.++.++++.+.+. |+++...+|..+.-
T Consensus 189 L~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 189 LSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred hccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 4433322 45788899999988 99998888876643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.4 Score=41.01 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 525 MLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..-|.+.|.|..|..-++.+.+.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4577889999999999888887763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.1 Score=41.14 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCCh
Q 037537 408 AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 408 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 487 (677)
......|+..+|..+|+...... +-+...-..+..++...|+++.|..++..+-.. .. ..-+.. +
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~--~~~~~~----------l 206 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQ--DKAAHG----------L 206 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--ch--hhHHHH----------H
Confidence 35567788889999888888753 333556667778888899999998888876432 11 111111 1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 488 TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...++++..+...|+.. ..+.-+.-+|+|...-..|...|...|+.++|.+.+-.+.++
T Consensus 207 ~a~i~ll~qaa~~~~~~---~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 207 QAQIELLEQAAATPEIQ---DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHhcCCCHH---HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11233444443333221 222334567888888999999999999999999876666543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.96 E-value=22 Score=41.16 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=14.7
Q ss_pred CCHhHHHHHHHHHccCC--ChHHHHHHHHHHH
Q 037537 229 LDMYTLASILTAFTSLE--DLVGGLQFHAHLI 258 (677)
Q Consensus 229 pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~ 258 (677)
|+ .-...+|.++.+.+ .++.+.+....+.
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 44 33445555665555 4555555544444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.90 E-value=8.2 Score=40.13 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPP--TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMI 478 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 478 (677)
-.+..+..+.|+.++|++.|++|.+.. ++ +......|+.++...+.+.++..++.+-.+. ..+.+ ...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHH
Confidence 346667778899999999999998753 33 2346778889999999999999998886532 22222 44566543
|
The molecular function of this protein is uncertain. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.92 Score=46.54 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCe----eeHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDE----VSWNSMVVAYGQHREGLEALQLFQEMVSL 225 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 225 (677)
+.+...++.+-..|.+.|++++|...|++. ...|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667788888999999999999999886 445554 35889999999999999999999998874
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.56 E-value=4.1 Score=35.09 Aligned_cols=42 Identities=24% Similarity=0.121 Sum_probs=20.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSK 46 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 46 (677)
.++..+...+........++.+++.+ +.++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555555444 2444445555555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.00 E-value=6.1 Score=33.07 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
+.....++.+...|+-+.-.++..+. +.-+..+|....-+.++|.+.|+..++-+++++.-++|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l---------------~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNEL---------------KKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH--------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH---------------hhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455566666666665555554 222234678899999999999999999999999999997
Q ss_pred c
Q 037537 552 Q 552 (677)
Q Consensus 552 ~ 552 (677)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.3 Score=44.32 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred HHHHHccCCHHHHHHHHhcCCC------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPE------------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNIT 437 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 437 (677)
.+.|.|.|++..|..-|++... .-..+++.+..+|.+.+++.+|++.-++.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 3567889999998888776421 123467788889999999999999999999976 777888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-HHHHHHHHHHhhcCChHH-HHHHHHhCC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-EHYSCMIDLLGRAGKLTD-AERLIEAMP 498 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~-A~~~~~~m~ 498 (677)
+-.=-.+|...|+++.|+..|+.+.+ +.|+. ..-+.|+.+--+.....+ ..++|.+|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87888899999999999999999986 47764 444555555555555444 467777774
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.084 Score=46.03 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=58.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhH
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (677)
.+++.+...+.+......++.+.+.+...++...+.++..|++.+..+...+++..... +-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46778888889999999999999887677899999999999999887888887774333 222334444444444444
Q ss_pred HHHHhccC
Q 037537 84 ARQLFDQI 91 (677)
Q Consensus 84 A~~~f~~m 91 (677)
|.-++..+
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 44444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=6 Score=40.92 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=92.2
Q ss_pred CHHHHHHHHhcCC---CCC---cchHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 384 NLEDARRLFDRMP---EHN---TVSLNSMIAGYAQ---------HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 384 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++.++.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3566777888766 333 2233333333221 234567888888888876 66777777777777888
Q ss_pred CCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch--hHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV--PYVM 525 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~--~~~~ 525 (677)
++++.|...|+.... +.|+ ...|........-+|+.++|.+.+++. ++++|.-.. ..-.
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a---------------lrLsP~~~~~~~~~~ 413 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKS---------------LQLEPRRRKAVVIKE 413 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------hccCchhhHHHHHHH
Confidence 889999999999874 5776 445555555666789999999999884 345554333 2334
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037537 526 LANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~ 545 (677)
.++.|..++ .++|++++-+
T Consensus 414 ~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHcCCc-hhhhHHHHhh
Confidence 445676655 5666666543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.66 Score=44.74 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.++..++..+..+|+.+.+.+.+++. ++.+|-+...|..|+.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~L---------------i~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERL---------------IELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH---------------HhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45677888888999999888888766 688899999999999999999999999999998865
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=2.1 Score=41.70 Aligned_cols=162 Identities=9% Similarity=0.039 Sum_probs=91.4
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HH--HHhccCCHHHH
Q 037537 382 CGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV--LS--ACAHTGKVAEG 454 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--l~--a~~~~g~~~~a 454 (677)
.|+..+|-..++++.+ .|..+|+--=.+|..+|+.+.-...+++..-. ..||...|..+ +- ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4566666655655554 35666666666777777766666666666543 13443222222 22 22356667777
Q ss_pred HHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 455 QKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
++.-++..+ +.| |.-.-.+....+--.|++.++.++..+-...... ..-.-.-.|....-.|...
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----------s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----------SWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----------hhHHHhhhhHHHHHhhhcc
Confidence 666555543 233 3344445556666667777777776655311100 0000122455555667778
Q ss_pred CChHHHHHHHHHHHhCCCccCCcee
Q 037537 534 GKWEEVATIRRLMRDRGVQKKPGFS 558 (677)
Q Consensus 534 g~~~~a~~~~~~m~~~g~~~~~~~s 558 (677)
+.++.|+++|+.=.-+.+.++.+++
T Consensus 261 aeye~aleIyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 261 AEYEKALEIYDREIWKRLEKDDAVA 285 (491)
T ss_pred cchhHHHHHHHHHHHHHhhccchhh
Confidence 8999999999876666666766643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.58 E-value=15 Score=37.28 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=102.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCCC---Ccc----hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPEH---NTV----SLNSMIAGYAQ---HGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
.-.|+-.|....+++...++.+.+... ++. .--...-++-+ .|+.++|++++..++...-.+++.||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 345555688899999999999988763 111 11123344556 78999999999997766668888888877
Q ss_pred HHHHhc---------cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 442 LSACAH---------TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 442 l~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
...|-. ....++|...+.+.- .+.|+..+--.++.++.-+|...+...-++++..+ ......++-
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~---l~~llg~kg 297 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVK---LSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHH---HHHHHHhhc
Confidence 665431 224667777666543 55676554434444555555433222212211100 000000000
Q ss_pred hccCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 513 LQLEP-SNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 513 ~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+++ .+-..+.++..++.-.|+.++|.+..++|...
T Consensus 298 -~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 -SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred -cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 0111 23344558889999999999999999999865
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.3 Score=34.70 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=33.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+.|++++|.+.|+.+..+|-..|- ....--|+.+|-+.|++++|...+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34567777777777777766444432 334455667777777777777766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.43 E-value=18 Score=36.81 Aligned_cols=172 Identities=19% Similarity=0.109 Sum_probs=91.0
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCC-Cc-chHH-----HHHHHHHh---CCChhHHHHHHHHhHhcCCCCCcccHHHHHH
Q 037537 70 VLLAAYARQLRIASARQLFDQIPQP-DL-VSYN-----TLISAYAD---CGDTESALSLFKDMREKRFDTDGFTLSGLIT 139 (677)
Q Consensus 70 ~li~~~~~~g~~~~A~~~f~~m~~~-~~-~~~~-----~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 139 (677)
.++-.|-...+++...++++.+... +. .+-+ ...-++-+ .|+.++|++++..+....-.+++.||..+=+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888999999999998863 21 1111 22334455 7899999999999776666677777643322
Q ss_pred HhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeee---HHHHHHHHHhCCC-chH
Q 037537 140 ASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVS---WNSMVVAYGQHRE-GLE 214 (677)
Q Consensus 140 a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~---~~~li~~~~~~g~-~~~ 214 (677)
. .-+....++.. |... +++|...+.+- ...||..+ +-+|+........ ..+
T Consensus 226 I----------yKD~~~~s~~~-d~~~-------------ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 226 I----------YKDLFLESNFT-DRES-------------LDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred H----------HHHHHHHcCcc-chHH-------------HHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHH
Confidence 1 11111222211 2111 44444444444 22233322 2222222211111 112
Q ss_pred HHHHH---HH-HHHCCC---CCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCch
Q 037537 215 ALQLF---QE-MVSLQL---GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNS 266 (677)
Q Consensus 215 A~~~~---~~-m~~~g~---~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 266 (677)
..++- .. ..+.|. ..|--.+.+++.++.-.|+.+.|.+..+.+.+.. +|.-
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 22221 11 122332 2345566778888888889999999888888764 4433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.22 E-value=13 Score=35.23 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C----ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P----DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVC 339 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (677)
...|+.-+.-+-+ |+ +++|.+.|+.+.. | ...+--.++-++.+. +++++|+..+++....-..-...-|..
T Consensus 35 ~~LY~~g~~~L~~-gn-~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNEGLTELQK-GN-YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-GEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHhc-CC-HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3444444444444 77 9999999988863 2 123444566778888 999999999998877543333344554
Q ss_pred HHHHhh
Q 037537 340 VISACS 345 (677)
Q Consensus 340 ll~a~~ 345 (677)
-|.+.+
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 454443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.19 E-value=6.7 Score=41.80 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHccCCHHHHHHHHhcCCC-----C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cc
Q 037537 377 AMYSKCGNLEDARRLFDRMPE-----H--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA-HT 448 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~ 448 (677)
.++...|++++|.+.|++... + ....+--+.-.+...+++++|.+.|..+.+.. ..+..+|..+..+|. ..
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 444556777777777775432 1 11223334445666677777777777777653 334445554444442 34
Q ss_pred CCH-------HHHHHHHHHh
Q 037537 449 GKV-------AEGQKYFSMM 461 (677)
Q Consensus 449 g~~-------~~a~~~~~~m 461 (677)
|+. ++|.++|.+.
T Consensus 354 ~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred ccchhhhhhHHHHHHHHHHH
Confidence 444 4555555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.92 E-value=17 Score=35.68 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=64.3
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhh--------HHHHHHHHHccCChHHHHHHHhhccc------------cCh---
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYL--------SNHFILLYSKCGCLSAAHHAFNQTQH------------ANV--- 65 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~~--- 65 (677)
..+.|+.+.|...+.++...-...++.. |+.-...+.+..+++.|...+++..+ ++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3467888999988888877542233322 33333444333267666655554332 221
Q ss_pred --hHHHHHHHHHHhcCChhH---HHHHhccCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 66 --FSFNVLLAAYARQLRIAS---ARQLFDQIPQ--PD-LVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 66 --~~~~~li~~~~~~g~~~~---A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
.+...|+.+|...+..+. |.++++.+.. |+ +..+-.=+..+.+.++.+++.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 245556666666665443 3334444422 33 334444455555567777777777777765
|
It is also involved in sporulation []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=6 Score=33.00 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=54.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCC
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGK 486 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~ 486 (677)
+.+..|+.+.|++.|.+.+.. .+-+...||.=..++.-.|+.++|+.=+++..+.-|-+.. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555566666666655552 1233455565556666666666666555555544232211 1122223345666777
Q ss_pred hHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 487 LTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
.+.|..-|+..-.-+. ..+-+++.+++|
T Consensus 131 dd~AR~DFe~AA~LGS---~FAr~QLV~lNP 158 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS---KFAREQLVELNP 158 (175)
T ss_pred hHHHHHhHHHHHHhCC---HHHHHHHHhcCh
Confidence 7777777765532222 233456667777
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.76 E-value=30 Score=38.16 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=67.2
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 181 (677)
=|..+.+.+.+++|++.-+.-.. ..|-. .-..++...|+.+.-.|+++
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~------------------------------~i~kv~~~yI~HLl~~~~y~ 409 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERF------------------------------VIKKVGKTYIDHLLFEGKYD 409 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--Ccccc------------------------------chHHHHHHHHHHHHhcchHH
Confidence 36677788899999887765432 22211 01235577788888889999
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc
Q 037537 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS 243 (677)
Q Consensus 182 ~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 243 (677)
+|-.+.-.| ...+..-|---+.-+...++......+ +.......+...|-.+|..+..
T Consensus 410 ~Aas~~p~m-~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 410 EAASLCPKM-LGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHhhhHHH-hcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 998888888 656667777777777777665543332 2222222345566666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.53 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+|..|.++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999854
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.55 E-value=3.1 Score=39.66 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMI 478 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 478 (677)
|+.-+. +.+.|++.+|...|...++.. +-+ ...+-=|..++...|++++|..+|..+.+.|+-.|. ++.+--|.
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 554443 345666888888888887753 211 123444667778888888888888888887666665 46777778
Q ss_pred HHHhhcCChHHHHHHHHhCC
Q 037537 479 DLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~ 498 (677)
....+.|+.++|...+++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 88888888888888887763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.41 E-value=2.5 Score=43.70 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQK 553 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 553 (677)
..+...+-+.|+.+||.+.+++|.. .|.. ++......|+..+...+++.++..++.+-.+....+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~--------------~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNL--------------DNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCcc--------------chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 3455666677888888888877731 1111 234567778888888888888888887765544444
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHHcCCccc
Q 037537 554 KPGFSWIEVKKQMHVFVAEDGSHPMI-------KEIHNYLEEMSRKMKQAGYVPD 601 (677)
Q Consensus 554 ~~~~s~~~~~~~~~~~~~~~~~~~~~-------~~i~~~l~~l~~~~~~~g~~pd 601 (677)
...++|....-+. -.++|+..|+. ......++-+.+.++..+.+|+
T Consensus 329 SAti~YTaALLka--Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 329 SATICYTAALLKA--RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hHHHHHHHHHHHH--HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 4433332110000 00122222211 1122345666777777888887
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=16 Score=34.63 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=99.1
Q ss_pred HHccCCHHHHHHHHhcCCCCC---c---chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh---cc
Q 037537 379 YSKCGNLEDARRLFDRMPEHN---T---VSLNSMIAGYAQHGIGMEALRLFEWMLETN-IPPTNITFVSVLSACA---HT 448 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~---~~ 448 (677)
-.+.|++++|.+.|+.+.... + .+--.++-++-+.+++++|+..+++....- -.|| .-|...|.+.+ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 346799999999999987532 2 234445677788999999999999988742 2333 33444444433 22
Q ss_pred ----CCHH---HHHHHHHHhHHhcC---CccChH------------HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHH
Q 037537 449 ----GKVA---EGQKYFSMMKDMFG---FEPEGE------------HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIAL 506 (677)
Q Consensus 449 ----g~~~---~a~~~~~~m~~~~~---~~p~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (677)
.+.. +|..-|+.++++|- ..||.. +-..+.+-|.+.|.+..|..-+++|..+...
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~--- 199 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD--- 199 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc---
Confidence 2333 44555555555421 122322 1223445688889988888888877432111
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 507 KAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 507 ~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+....++-.|..+|.+.|-.++|.+.-+-+..
T Consensus 200 ---------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 200 ---------TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ---------ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 122334577788999999999999988776654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=12 Score=38.91 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=92.7
Q ss_pred chH--HHHHHHHHHcC-----ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 037537 401 VSL--NSMIAGYAQHG-----IGMEALRLFEWMLE-TNIPPTN-ITFVSVLSACA---------HTGKVAEGQKYFSMMK 462 (677)
Q Consensus 401 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 462 (677)
..| ..++.|....- ..+.|+.+|.+... +.+.|+- ..|..+...+. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666665522 34678899999982 2356774 33333322211 1334566777777776
Q ss_pred HhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH
Q 037537 463 DMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 463 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
+. .| |......+..+++-.|+++.|..+|++. +.++|+.+.+|........-+|+.++|.+
T Consensus 332 el---d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA---------------~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 332 DI---TTVDGKILAIMGLITGLSGQAKVSHILFEQA---------------KIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred hc---CCCCHHHHHHHHHHHHhhcchhhHHHHHHHH---------------hhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 53 44 5666677777778888899999999987 47889999999999999999999999999
Q ss_pred HHHHHHhC
Q 037537 542 IRRLMRDR 549 (677)
Q Consensus 542 ~~~~m~~~ 549 (677)
.+++..+.
T Consensus 394 ~i~~alrL 401 (458)
T PRK11906 394 CIDKSLQL 401 (458)
T ss_pred HHHHHhcc
Confidence 99885443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.3 Score=44.21 Aligned_cols=50 Identities=10% Similarity=-0.092 Sum_probs=40.4
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCChHHHHHHHhh
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSA----YLSNHFILLYSKCGCLSAAHHAFNQ 59 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 59 (677)
..+.|+.+.+..+|+..++.|. .|. .+|..|-++|.-.+++++|.+.|..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 4678999999999999999983 333 4577777888888999999998764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.47 E-value=23 Score=34.83 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
..+-..-+.++++.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|
T Consensus 206 ~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 206 EEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3344455555566665433333333333333 233455666666653 566666666653 34555544444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.40 E-value=27 Score=35.53 Aligned_cols=87 Identities=14% Similarity=0.016 Sum_probs=61.1
Q ss_pred HHHHHccCCHHHHHHHHhcCCC-------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 037537 376 VAMYSKCGNLEDARRLFDRMPE-------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAH 447 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 447 (677)
.+...+.|++.+|.+.|.+... ++...|-.......+.|+.++|+.--++..+ +.|. ...|..-..++.-
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 4556789999999999988764 2334566666777889999999998888876 3332 1233333344556
Q ss_pred cCCHHHHHHHHHHhHHh
Q 037537 448 TGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~ 464 (677)
.+.+++|.+.++...+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67889999988888765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.28 E-value=34 Score=36.57 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=105.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHN---TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...|+..++.-.+.|+.+...-+|++...|- ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 5567777888888899999998888876542 2235444444444588888877777666543332222222222234
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccCh-HHHHHHHHHHhhcCChHHHH---HHHHhCC---CCCChHH-------------
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEG-EHYSCMIDLLGRAGKLTDAE---RLIEAMP---FNPGSIA------------- 505 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~---~~~~~~~------------- 505 (677)
-..|+.+.|..+++.+.+. . |+. ..-.--+....|.|..+.+. +++.... ..+....
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 5678999999999999886 3 553 33333456677888888887 5554431 1111111
Q ss_pred -------HHHHHHHhccCCCCchhHHHHHHHHHhcCChH
Q 037537 506 -------LKAANHFLQLEPSNAVPYVMLANIYAASGKWE 537 (677)
Q Consensus 506 -------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~ 537 (677)
..+..++.+..|++...|..+++.....+-..
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 44555566788889999999999888776433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.11 E-value=9.1 Score=32.08 Aligned_cols=84 Identities=13% Similarity=0.227 Sum_probs=43.6
Q ss_pred ccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 381 KCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
.||++......+-.+.. +....+.-+.....+|+-++-.++++++.+.+ .|++..+..+.+||.+.|+..++.+++..
T Consensus 68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34554444444433322 22233445566666777777667777766533 66666677777777777777777777777
Q ss_pred hHHhcCC
Q 037537 461 MKDMFGF 467 (677)
Q Consensus 461 m~~~~~~ 467 (677)
+-+. |+
T Consensus 146 ACek-G~ 151 (161)
T PF09205_consen 146 ACEK-GL 151 (161)
T ss_dssp HHHT-T-
T ss_pred HHHh-ch
Confidence 7665 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.83 E-value=7.7 Score=41.36 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=102.5
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHhC-CCCch-----hhHHHHHHHHHHc---CCCHHHHHHHHhhCCC--CChhhH
Q 037537 233 TLASILTAFTSLEDLVGGLQFHAHLIKSG-FHQNS-----HIGSGLIDLYAKC---SGDMRDCMKVFEEIPQ--PDLVLW 301 (677)
Q Consensus 233 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~-----~~~~~li~~y~~~---g~~~~~A~~~f~~~~~--~~~~~~ 301 (677)
.+..+++..+-.||-+.|.+.+....+.+ +.... -.|...+..++.. +...+.|.++++.+.+ |+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34556666677788888888888776643 21111 2233333333332 3348889999999876 888888
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc
Q 037537 302 NTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK 381 (677)
Q Consensus 302 ~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k 381 (677)
...-.-+.+..|+.++|++.|++..... .+ +. +++ ...+--+.-.+.-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~---~~---------------Ql~------------~l~~~El~w~~~~ 317 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQ--SE---WK---------------QLH------------HLCYFELAWCHMF 317 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccch--hh---HH---------------hHH------------HHHHHHHHHHHHH
Confidence 7776666655599999999998765321 11 10 111 1122334455667
Q ss_pred cCCHHHHHHHHhcCCCCCcc---hHHHH-HHHHHHcCCh-------HHHHHHHHHHHH
Q 037537 382 CGNLEDARRLFDRMPEHNTV---SLNSM-IAGYAQHGIG-------MEALRLFEWMLE 428 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~---~~~~l-i~~~~~~g~~-------~~A~~l~~~m~~ 428 (677)
.+++++|.+.|..+.+.+.. .|.-+ ..++...|+. ++|.++|.+...
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 89999999999999874332 23222 2344567777 888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.55 E-value=45 Score=37.06 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=51.2
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHH
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIP-PTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~ 453 (677)
...-....|++++|..+|+.. |+++.+++++.+.+..-+. ++. .....-...+-...
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La------------------~~~d~vl~lln~~Ls~~l~~~~~----~~~~~s~~~~l~~l 477 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLA------------------EEYDKVLSLLNRLLSQVLSQPSS----SSLSDSERERLIEL 477 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHCSST----SSSSSTTTTSHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHcCccc----cccccchhhhHHHH
Confidence 344455678888888877665 4566677666665542100 000 00000001112333
Q ss_pred HHHHHHHhHHhcC----Ccc-ChHHHHHHHHH-----HhhcCChHHHHHHHHhCCCCCChHH
Q 037537 454 GQKYFSMMKDMFG----FEP-EGEHYSCMIDL-----LGRAGKLTDAERLIEAMPFNPGSIA 505 (677)
Q Consensus 454 a~~~~~~m~~~~~----~~p-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (677)
|..+.+....... +.+ ...++..|.+. +...|++++|++.++++..-|....
T Consensus 478 a~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~~~~ 539 (613)
T PF04097_consen 478 AKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPLDPS 539 (613)
T ss_dssp HHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S-HH
T ss_pred HHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCCHH
Confidence 4444333322100 111 23445544443 4688999999999999977775443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.53 E-value=2.4 Score=41.32 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCCh
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 487 (677)
-|.++|.+++|+..|..-+. +.| |.+++..=..+|.+...+..|..=-...... -...+.+|.|.|.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHHH
Confidence 35556666666666665554 344 5666665556666655555444333332211 12335566665555
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 488 TDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
.+++..+.+.. +-++.+++++|++
T Consensus 175 R~~Lg~~~EAK--------kD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 175 RESLGNNMEAK--------KDCETVLALEPKN 198 (536)
T ss_pred HHHHhhHHHHH--------HhHHHHHhhCccc
Confidence 55544444442 2234456666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.7 Score=28.59 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
+|..+...|...|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777774
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.58 E-value=0.038 Score=48.21 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=53.6
Q ss_pred HHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHH
Q 037537 40 FILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESA 115 (677)
Q Consensus 40 ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 115 (677)
+++.+.+.+.+....+.++.+.. .+....+.++..|++.++.+...++++... ..-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHHH
Confidence 45555566666666666666553 457778888888988887788888777332 23445667777777777777
Q ss_pred HHHHHHhH
Q 037537 116 LSLFKDMR 123 (677)
Q Consensus 116 ~~~~~~m~ 123 (677)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.2 Score=36.57 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=49.9
Q ss_pred HHHHHHHHHH---hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 472 EHYSCMIDLL---GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 472 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+.+.|++.. .+.++++++..+++.|. -+.|+.+..-..-.+.+...|+|.+|.++++...+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---------------vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---------------VLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3445555443 35789999999998883 45577777777778889999999999999999887
Q ss_pred CCC
Q 037537 549 RGV 551 (677)
Q Consensus 549 ~g~ 551 (677)
.+.
T Consensus 73 ~~~ 75 (153)
T TIGR02561 73 SAG 75 (153)
T ss_pred cCC
Confidence 664
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.3 Score=27.68 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.24 E-value=5 Score=38.28 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhc
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQ 514 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~ 514 (677)
.|+.-+..+ ..|++..|...|...++.|--.+ ....+--|...+...|++++|..+|..+.. -|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 566666554 67789999999999998642111 123344478999999999999999987732 232
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.|+-+.++.-|.....+.|+.++|..++++..++
T Consensus 211 -s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 211 -SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred -CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2566788999999999999999999999998764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.21 E-value=16 Score=31.52 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=54.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChH-HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGE-HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
..++.+++..+++.|. -+.|+.. .-..-...+.+.|+|.+|..+|++....+.......+-.++-+.-.....|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 3667777777777765 3455422 22222344566777777777777775433221111111111121122235777
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 037537 526 LANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
........|.-.++..+.+.+.
T Consensus 99 ~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 99 HADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhCCCHhHHHHHHHHh
Confidence 7777778888888888888776
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.17 E-value=12 Score=36.23 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=88.8
Q ss_pred HHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
....|++.+|...|+.... .+...--.|+.+|...|+.+.|..++..+-..--.........-|....+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3456778888877776543 2344556677888888888888888887654322222233223334444444444444
Q ss_pred HHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 456 KYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 456 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
.+-+.... .| |...--.+.+.|.-.|+.++|.+.+=.+..+. ..-.|...-..|+..+..-|
T Consensus 224 ~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-------------~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRD-------------RGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------ccccCcHHHHHHHHHHHhcC
Confidence 44444443 35 67777788888999999999988775542110 11134455556666666555
Q ss_pred ChH-HHHHHHHHH
Q 037537 535 KWE-EVATIRRLM 546 (677)
Q Consensus 535 ~~~-~a~~~~~~m 546 (677)
.-+ .+...+++|
T Consensus 287 ~~Dp~~~~~RRkL 299 (304)
T COG3118 287 PADPLVLAYRRKL 299 (304)
T ss_pred CCCHHHHHHHHHH
Confidence 322 344445444
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.64 E-value=27 Score=33.90 Aligned_cols=142 Identities=18% Similarity=0.279 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc-c-CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHH
Q 037537 416 GMEALRLFEWMLE-TNIPPTNITFVSVLSACAH-T-GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 416 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (677)
..+|+.+|+...- ..+--|..+...+++.... . .....-.++.+.+...++-.++..+-.++++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666663211 2244455566666665543 1 13344445566666666788899999999999999999999999
Q ss_pred HHHhCCCC--CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEE
Q 037537 493 LIEAMPFN--PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFV 570 (677)
Q Consensus 493 ~~~~m~~~--~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~ 570 (677)
+++..... |. .|...|...+..-...|+.. +.+++...|. .-||--.+
T Consensus 224 fW~~~~~~~~~~---------------~D~rpW~~FI~li~~sgD~~----~~~kiI~~Gh-----LLwikR~~------ 273 (292)
T PF13929_consen 224 FWEQCIPNSVPG---------------NDPRPWAEFIKLIVESGDQE----VMRKIIDDGH-----LLWIKRNN------ 273 (292)
T ss_pred HHHHhcccCCCC---------------CCCchHHHHHHHHHHcCCHH----HHHHHhhCCC-----eEEeeecC------
Confidence 99876322 22 47788999999999999954 4566666663 24543111
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH
Q 037537 571 AEDGSHPMIKEIHNYLEEMSRK 592 (677)
Q Consensus 571 ~~~~~~~~~~~i~~~l~~l~~~ 592 (677)
-+-.+++.+.|.+|++.
T Consensus 274 -----V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 274 -----VDVTDELRSQLSELFKK 290 (292)
T ss_pred -----CcCCHHHHHHHHHHHHh
Confidence 12345566777777664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=27 Score=32.23 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=75.4
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--CCc-chHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--HNT-VSLNSMIA-GYAQHGIGMEALRLFEWMLETNIPP----TNITFVS 440 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ 440 (677)
...+..+...+...++.+.+...+..... ++. ..+..... .+...|+.+.|...|.+... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 33444444555555555555555555443 111 12222222 45556666666666666543 222 1222333
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
....+...++.+++...+...... ... ....+..+...+...+.+++|...+... +...|..
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------------~~~~~~~ 235 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKA---------------LELDPDN 235 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHH---------------HhhCccc
Confidence 333344555556666555555542 112 2444555555555555555555555544 2333333
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
...+..+...+...|.++++...+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444555555555554433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.45 E-value=29 Score=32.63 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=90.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI--PPTN---ITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~---~t~~~ll~ 443 (677)
+..++--..+|..+|..+.|-..+++..+ ...+-++++|+++|++...--. .-+. .-+..+-.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 45667778889999998888777665422 1234567888888877654211 1111 12333444
Q ss_pred HHhccCCHHHHHHHHHHhHHh---cCCccCh-HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDM---FGFEPEG-EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
.+.+...+++|-..|.+-... +.-.|+. ..|.+.|-.|.-..++..|.+.++....-|+ -+.|++
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~-----------f~~sed 227 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA-----------FLKSED 227 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc-----------ccChHH
Confidence 555666777766555433211 0111222 2355556667777899999999988543333 234567
Q ss_pred chhHHHHHHHHHhcCChHHHHHHH
Q 037537 520 AVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
..+...|+.+| ..|+.+++.++.
T Consensus 228 ~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 228 SRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77788888887 457777776554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.41 E-value=13 Score=33.56 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC------hHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE------GEH 473 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~ 473 (677)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+..+..+......-..| ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3555666677777777777777777766555543 34566677777777777777776666543111111 123
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
|..|. +...|++.+|-+.|-+...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccCc
Confidence 33332 2356889998888877643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.39 E-value=36 Score=37.83 Aligned_cols=214 Identities=15% Similarity=0.082 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHhH--
Q 037537 165 SVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHRE-------GLEALQLFQEMVSLQLGLDMYT-- 233 (677)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t-- 233 (677)
.+| ++|-.+.|||++++|.++..+. ........+-..+..|..+.+ -+....-|++........|++-
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 344 4677888999999999999333 133444567777888877533 2355566666665444335432
Q ss_pred HHHHHHHHccC-CC-------hHHHHHHHHHHHHhCCCCc-----hhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhh
Q 037537 234 LASILTAFTSL-ED-------LVGGLQFHAHLIKSGFHQN-----SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVL 300 (677)
Q Consensus 234 ~~~ll~a~~~~-~~-------~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~ 300 (677)
.-.+|..|--. .. .+.=..+.=.+++..-..+ ..++..|=....+-|. +.|.. ..+...
T Consensus 192 vY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge------~~F~~--~~~p~~ 263 (613)
T PF04097_consen 192 VYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE------SHFNA--GSNPLL 263 (613)
T ss_dssp HHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G------GGCTT--------
T ss_pred HHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch------hhccc--chhHHH
Confidence 22233333221 11 2222222222222221111 1222222111111111 11111 112222
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHH-hhcccCccchhHHHHHH
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIK-IEIRSNRISVNNALVAM 378 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~li~~ 378 (677)
| ...+.-. |+++.|++++.+ ..+...|.+.+...|..+.-+. .+... ..+.. ..-++. ..-+..||..
T Consensus 264 Y---f~~LlLt-gqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~-~ln~arLI~~ 333 (613)
T PF04097_consen 264 Y---FQVLLLT-GQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPP-PLNFARLIGQ 333 (613)
T ss_dssp H---HHHHHHT-T-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHH
T ss_pred H---HHHHHHH-hhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCC-CcCHHHHHHH
Confidence 2 2233335 899999998876 3345667777777777666555 22222 11111 111111 2335677888
Q ss_pred HHc---cCCHHHHHHHHhcCCC
Q 037537 379 YSK---CGNLEDARRLFDRMPE 397 (677)
Q Consensus 379 y~k---~g~~~~A~~~~~~~~~ 397 (677)
|.+ ..+..+|.+.|--+..
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 876 4577888888766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.15 E-value=30 Score=32.53 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
.++--..+|..+|. .+.|-..+++.-. ...+ .++++|+++|.+-.
T Consensus 93 l~eKAs~lY~E~Gs-pdtAAmaleKAak------------~len-v~Pd~AlqlYqral 137 (308)
T KOG1585|consen 93 LYEKASELYVECGS-PDTAAMALEKAAK------------ALEN-VKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHhCC-cchHHHHHHHHHH------------Hhhc-CCHHHHHHHHHHHH
Confidence 44455566677666 5555444443211 1123 55677777776644
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.04 E-value=5.9 Score=41.87 Aligned_cols=150 Identities=22% Similarity=0.177 Sum_probs=99.3
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHH
Q 037537 77 RQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAI 156 (677)
Q Consensus 77 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~ 156 (677)
-.|+++.|..++-.++++ .-+.++..+-+.|..++|+++- ||+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d------------------------ 641 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPD------------------------ 641 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChh------------------------
Confidence 346777777766665532 3445566666777777776552 2211
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 157 YCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 157 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
.-.....+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..
T Consensus 642 ------------~rFelal~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~ 697 (794)
T KOG0276|consen 642 ------------QRFELALKLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGS 697 (794)
T ss_pred ------------hhhhhhhhcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhh
Confidence 1123445679999999988776 4566799999999999999999999987654 566
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
|+-.+...|+-+....+-....+.|. .| .-.-+|...|+ ++++.+++.+-
T Consensus 698 LlLl~t~~g~~~~l~~la~~~~~~g~-~N-----~AF~~~~l~g~-~~~C~~lLi~t 747 (794)
T KOG0276|consen 698 LLLLYTSSGNAEGLAVLASLAKKQGK-NN-----LAFLAYFLSGD-YEECLELLIST 747 (794)
T ss_pred hhhhhhhcCChhHHHHHHHHHHhhcc-cc-----hHHHHHHHcCC-HHHHHHHHHhc
Confidence 77777777877766666666666652 22 22234555577 77777776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.02 E-value=5.9 Score=33.01 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=67.9
Q ss_pred HHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCC
Q 037537 377 AMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN---ITFVSVLSACAHTGK 450 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~ 450 (677)
-+.+..|+++.|.+.|.+... .+...||.-..++.-+|+.++|++=+++.++..-.-.. ..|..=...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356789999999999987653 57788999999999999999999999998874212121 234444445677899
Q ss_pred HHHHHHHHHHhHHh
Q 037537 451 VAEGQKYFSMMKDM 464 (677)
Q Consensus 451 ~~~a~~~~~~m~~~ 464 (677)
.+.|+.=|+...+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 99999999887765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.53 E-value=7.5 Score=37.67 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
..++..++..+..+|+.+.+...++++.. -|...|..++.+|.+.|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 55677778888888888887777777654 2555778888888888888888877777655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.50 E-value=56 Score=35.02 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=75.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHH-hcCChhHHHH
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYA-RQLRIASARQ 86 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~-~~g~~~~A~~ 86 (677)
+....+.+..+++.++..- |.----|......=.+.|..+.+..+|++... .....|...+.... ..|+.+..++
T Consensus 57 ~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 57 SIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred chhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3334455555566655432 32233444455555678888899999988777 33445555555443 4578888888
Q ss_pred HhccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 87 LFDQIPQ------PDLVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 87 ~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
.|+.... ....-|...|..-..++++.....+|++.++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 8877654 34556888888888888999999999998764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.27 E-value=4 Score=35.66 Aligned_cols=65 Identities=25% Similarity=0.400 Sum_probs=48.4
Q ss_pred hHHHHHHHHHH---hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 471 GEHYSCMIDLL---GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 471 ~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
..+.+.|++.+ .+.++.+++..+++.+. -+.|..+..-..-.+.+...|+|.+|.++++.+.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---------------vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALR---------------VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHH---------------HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34455555544 46678888888888773 4567777777777888889999999999999987
Q ss_pred hCC
Q 037537 548 DRG 550 (677)
Q Consensus 548 ~~g 550 (677)
+.+
T Consensus 72 ~~~ 74 (160)
T PF09613_consen 72 ERA 74 (160)
T ss_pred ccC
Confidence 655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.74 E-value=5.4 Score=34.16 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHccCCHHHHHHHHhcCCCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccC
Q 037537 378 MYSKCGNLEDARRLFDRMPEH------NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTG 449 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g 449 (677)
...+.|++++|.+.|+.+..+ ....--.++.+|.+.|++++|...+++.++. .|+ .+-|...+.++++-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHHHHHHHHHH
Confidence 345679999999999988752 2234556788999999999999999999985 444 245666666655443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.61 E-value=7.5 Score=30.51 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+..+.+.| .+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 35556667777778899999999999999999999999999998886533 24556776654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.54 E-value=29 Score=30.85 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhH-HHHHHHHHHhc-CChhHHHHHhccCCCCCc
Q 037537 19 KSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFS-FNVLLAAYARQ-LRIASARQLFDQIPQPDL 96 (677)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~-g~~~~A~~~f~~m~~~~~ 96 (677)
.+....+.+.+++|+...+..+++.+.+.|.+....++...-.-+|... .-.|++.-.+. .-..-|...+.++ .
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL----~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL----G 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh----h
Confidence 4556667778999999999999999999999998888877555444443 33333322211 0123344444443 3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC 146 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 146 (677)
..+..++..+...|++-+|+++.+..... +......++.+....++
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSND 135 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCC
Confidence 35777888999999999999998875332 22233445555554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.53 E-value=50 Score=33.58 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=26.4
Q ss_pred HHHHhcCChhHHHHHHhhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHH
Q 037537 172 TCYSRNGFLDEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREGLEALQLFQEMVS 224 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 224 (677)
.+..+.|+++...+..... .. ++...+.++... +.++++++....+....
T Consensus 6 eaaWrl~~Wd~l~~~~~~~-~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQS-NEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHhcCChhhHHHHHhhc-cCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 4556667777755555555 22 222233333322 56666666666655543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.36 E-value=2 Score=26.15 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 577778888888888888888888877
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.24 E-value=7.3 Score=30.90 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 418 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
+...-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666778899999999999999999999999999999987644 33447877765
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.90 E-value=31 Score=30.68 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=25.7
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFE 424 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 424 (677)
..+++.+...|++-+|.+........+.+.-..++.+-.+.++..-=..+|+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555556666666666655444333333444555444444443333333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.59 E-value=36 Score=31.29 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=119.0
Q ss_pred HHHHHHHHhhCCC--C---ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc-CCCCCcchHHHHHHHhhccC-hhHHHHH
Q 037537 283 MRDCMKVFEEIPQ--P---DLVLWNTMISGYSQKEEYSDQALGCFKKLNRV-GYHPDDCSFVCVISACSNLS-PSLGKQI 355 (677)
Q Consensus 283 ~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~-~~~~~~i 355 (677)
...+...+..... + ....+......+... +....+...+...... ........+..........+ ...+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4555555444432 2 235566666667767 7778888777776643 11222222322233333333 4444444
Q ss_pred HHHHHHhhcccCccchhHHHHH-HHHccCCHHHHHHHHhcCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 356 HALTIKIEIRSNRISVNNALVA-MYSKCGNLEDARRLFDRMPEHNT------VSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~li~-~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
+.........+. ........ .|...|+++.|...|......+. ..+......+...++.++|+..+.+...
T Consensus 118 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPD--LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 444444322221 12222223 67888888888888887643221 1233333345667888888888888887
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 429 TNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 429 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.. +. ....+..+...+...+..+.+...+...... .|+ ...+..+...+...|.++++...+...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 43 33 3567777777777888888888888887753 443 344444444444666777777777655
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.10 E-value=38 Score=32.78 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+.....|..+|.+.+|.++.++. +.++|-+...|-.|++.|+..|+--+|.+-+++|.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~---------------ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRA---------------LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH---------------hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33446788999999999998876 57888899999999999999999888888777774
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.07 E-value=21 Score=35.33 Aligned_cols=27 Identities=11% Similarity=0.395 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHH
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLI 138 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll 138 (677)
+++.+.+++.|.+.|++-+.++|.+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHH
Confidence 345556777888888887777775533
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.04 E-value=65 Score=33.84 Aligned_cols=142 Identities=11% Similarity=0.129 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
..-+++..+.++-...-...+-.+|..- ..+...|..++..|... .-++-..+|+++.+- .+ -|+..-..|++.|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~-df-nDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DF-NDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cc-hhHHHHHHHHHHH
Confidence 3445566666666666666666677663 34556666666666655 345555666666543 32 2444445556656
Q ss_pred hhcCChHHHHHHHHhC-----CCCCChHHHHHHHHHhccCCCCch--------------------hHHHHHHHHHhcCCh
Q 037537 482 GRAGKLTDAERLIEAM-----PFNPGSIALKAANHFLQLEPSNAV--------------------PYVMLANIYAASGKW 536 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m-----~~~~~~~~~~~~~~l~~l~p~~~~--------------------~~~~l~~~y~~~g~~ 536 (677)
-+ ++.+.+..+|.++ +.+.+..+.+..+++.++-|+|-. .+.-+-.-|....+|
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 55 6666666666553 334444455555565554444332 233344567788899
Q ss_pred HHHHHHHHHHHhC
Q 037537 537 EEVATIRRLMRDR 549 (677)
Q Consensus 537 ~~a~~~~~~m~~~ 549 (677)
++|+++.+-+.+.
T Consensus 222 ~eai~Ilk~il~~ 234 (711)
T COG1747 222 TEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999866554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.86 E-value=84 Score=34.98 Aligned_cols=173 Identities=16% Similarity=0.036 Sum_probs=88.1
Q ss_pred HHHHHHHHHHH-cCCCCCh--hhHHHHHHHHH-ccCChHHHHHHHhhccc----cCh-----hHHHHHHHHHHhcCChhH
Q 037537 17 TGKSLHALYLK-NLVPFSA--YLSNHFILLYS-KCGCLSAAHHAFNQTQH----ANV-----FSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 17 ~a~~~~~~~~~-~~~~~~~--~~~~~ll~~~~-~~g~~~~a~~~~~~~~~----~~~-----~~~~~li~~~~~~g~~~~ 83 (677)
.|+..++.+.+ ..++|.. .++-.+.+.+. ...+++.|+..+++... ++. .....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34556666663 2233322 34445555554 66789999998886654 111 12234556666665544
Q ss_pred HHHHhccCCC----CCcchHHH----H-HHHHHhCCChhHHHHHHHHhHhcC---CCCCcccHHHHHHHhhcchh----h
Q 037537 84 ARQLFDQIPQ----PDLVSYNT----L-ISAYADCGDTESALSLFKDMREKR---FDTDGFTLSGLITASSNNLC----L 147 (677)
Q Consensus 84 A~~~f~~m~~----~~~~~~~~----l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~~~----~ 147 (677)
|.+..++..+ .....|.. + +..+...+++..|++.++.+...- ..|-...+..++.+...... .
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 7777766443 11222332 2 222333478999999998876543 23334445455555443322 2
Q ss_pred HHHHHHHHHHhC---------CCCChhHHHHHHHHH--HhcCChhHHHHHHhhc
Q 037537 148 IKQLHCLAIYCG---------FDHYASVNNSLLTCY--SRNGFLDEAKRVFYEM 190 (677)
Q Consensus 148 ~~~i~~~~~~~g---------~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m 190 (677)
..+....+.... -.|...+|..+++.+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222222221111 123445666666544 3556666666555554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.89 E-value=2.7 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688899999999999999999998765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=81.89 E-value=48 Score=33.12 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=58.9
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcC-------CCCCcc------hHHHHHHHHHHcCChHHHHHHHHHHHH----CCC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRM-------PEHNTV------SLNSMIAGYAQHGIGMEALRLFEWMLE----TNI 431 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~-------~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~ 431 (677)
..++-+|...|.+..++++|.-+..+. .-.|.. +.--|..++...|+..+|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 567778888888888888776443332 213322 122355677788888888777776543 342
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037537 432 PPT-NITFVSVLSACAHTGKVAEGQKYFSMMK 462 (677)
Q Consensus 432 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 462 (677)
+|- ......+.+.|...|+.+.|+.-++...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 332 2345566677788888888877766554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.63 E-value=36 Score=29.88 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChH-HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGE-HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..++.+++..++..+.- +.|... +-..-...+.+.|+|.+|..+|+++
T Consensus 22 ~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455555555555542 344321 1122223344555555555555554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.45 E-value=2.3 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 037537 521 VPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
.....|..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.26 E-value=3.1 Score=26.60 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999998865
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.18 E-value=1.2e+02 Score=35.58 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=60.3
Q ss_pred CChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHH
Q 037537 178 GFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHL 257 (677)
Q Consensus 178 g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (677)
+++++|..-+.+++ ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+. ++
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HH
Confidence 56777777777762 334555566566778888888774 5777777666655542 11
Q ss_pred HHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 258 IKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 258 ~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
.+.. -++--.-+|.++|+ .++|.+.+.. + |++.+|+.+-.+|.
T Consensus 950 ~~~~------~~~~Aal~Ye~~Gk-lekAl~a~~~------------------~-~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGK-LEKALKAYKE------------------C-GDWREALSLAAQLS 992 (1265)
T ss_pred HHhc------cccHHHHHHHHhcc-HHHHHHHHHH------------------h-ccHHHHHHHHHhhc
Confidence 1111 12223346777777 8887666554 3 77777777766654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.95 E-value=3.1 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46899999999999999999999998763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=80.87 E-value=18 Score=32.69 Aligned_cols=97 Identities=15% Similarity=0.054 Sum_probs=69.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHN------TVSLNSMIAGYAQHGIGMEALRLFEWMLE---TNIPPTNITFV 439 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~ 439 (677)
-..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+... .|-.++...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4566789999999999999999999988743 23577788888899999999888877654 32223332222
Q ss_pred HHHHH--HhccCCHHHHHHHHHHhHHhc
Q 037537 440 SVLSA--CAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 440 ~ll~a--~~~~g~~~~a~~~~~~m~~~~ 465 (677)
.+..+ +...+++.+|-+.|-.....+
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 23332 345788999888887776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.58 E-value=41 Score=29.87 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=81.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH-HHHHH--HHHHhhcC
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNI-TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE-HYSCM--IDLLGRAG 485 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 485 (677)
+++.+..++|+.-|..+.+.|...-++ ............|+...|...|+++-.. .-.|-.. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456778899999999998877543322 2223334456889999999999998765 2223222 11111 22456778
Q ss_pred ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 486 KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+++....++-+....+ |--...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n--------------~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGN--------------PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCC--------------hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888887776643222 22334566777888899999999999988765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 6e-11
Identities = 29/286 (10%), Positives = 70/286 (24%), Gaps = 19/286 (6%)
Query: 345 SNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH------ 398
LS + + + ++ + + A L A L
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLL-AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL 162
Query: 399 -NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEG-QK 456
N+++ G+A+ G E + + + + + P +++ + L + A ++
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222
Query: 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLE 516
M G + + + ++ RA L ++ P + L+
Sbjct: 223 CLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
Query: 517 PSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSH 576
+ + V V A
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVV--SVEKPTLPSKEVKHARKTLK 339
Query: 577 PMIKEIHNYLEEMSRKMKQAGYVPDKEKRLVHH-------SEKLAV 615
+ + L R+ K E R + ++
Sbjct: 340 TLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVR 385
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 4e-07
Identities = 16/137 (11%), Positives = 35/137 (25%), Gaps = 10/137 (7%)
Query: 61 QHANVFSFNVLLAAYARQLRIASARQLFDQI-------PQPDLVSYNTLISAYADCGDTE 113
++ A L L YN ++ +A G +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 114 SALSLFKDMREKRFDTDGFTLSGLITA---SSNNLCLIKQLHCLAIYCGFDHYASVNNSL 170
+ + +++ D + + + + I++ G A L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 171 LTCYSRNGFLDEAKRVF 187
L+ R L +V
Sbjct: 243 LSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 5e-06
Identities = 28/223 (12%), Positives = 59/223 (26%), Gaps = 17/223 (7%)
Query: 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFN-- 58
++L+ G+ L ++ + + + F L AHH
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 59 -----QTQHANVFSFNVLLAAYARQLRIASARQLFDQIP----QPDLVSYNTLISAYADC 109
+ + + +N ++ +ARQ + + PDL+SY +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 110 GDTESALS-LFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNN 168
+ + M + +G L L TA + +
Sbjct: 214 DQDAGTIERCLEQMSQ-----EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 169 SLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHRE 211
S+ AK ++ + + H E
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME 311
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 5e-06
Identities = 84/641 (13%), Positives = 189/641 (29%), Gaps = 208/641 (32%)
Query: 68 FNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYA-DCGDTESALSLFKDMREKR 126
F LL+ ++ +++ + + Y L+S + ++ + R++
Sbjct: 68 FWTLLSKQEEM-----VQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 127 F-DTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKR 185
+ D F + N+ ++ L +LL L AK
Sbjct: 120 YNDNQVF--------AKYNVSRLQPYLKL------------RQALLE-------LRPAKN 152
Query: 186 VF-YEMG---------------EIK----DEVSWNSMVVAYGQHREGLEALQLFQEMVSL 225
V + +++ ++ W ++ L++ Q++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----KNCNSPETVLEMLQKL-LY 207
Query: 226 QLGLDMYTLASILTA-FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMR 284
Q+ + + + + + + L+ L+KS ++N L+ L +++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENC-----LLVL-----LNVQ 254
Query: 285 D--CMKVFEEIPQPDL---VLWNT-------MISGYSQKEEYSDQALGCFKKLNRVGYHP 332
+ F +L +L T +S + D + + P
Sbjct: 255 NAKAWNAF------NLSCKILLTTRFKQVTDFLSAATTTHISLDH--------HSMTLTP 300
Query: 333 DDCSFVCVISACSNLS----PSLGKQIHALTIKI---EIRSNRISVNN-------ALVAM 378
D+ ++ + P + + I IR + +N L +
Sbjct: 301 DEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 379 YSKC-GNLE--DARRLFDRM---PEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIP 432
LE + R++FDR+ P S + I L L W ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPP----SAH----------IPTILLSLI-W---FDVI 400
Query: 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYS---CMIDLLGRAGKLTD 489
+++ V V + KY + K P+ S ++L +
Sbjct: 401 KSDVMVV-----------VNKLHKYSLVEKQ-----PKESTISIPSIYLELKVKLENEYA 444
Query: 490 AER-LIEA----MPFNPGSIALKAA-NHFLQLEPSNAVPYVM--LANIYAASGKWEEVAT 541
R +++ F+ + +F ++ L NI E +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--------HIGHHLKNIEHP----ERMTL 492
Query: 542 IRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPM-------------IKEIHNYLEE 588
R + D F ++E +K H A + S + I + E
Sbjct: 493 FRMVFLD--------FRFLE-QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 589 MSRKMKQAGYVPDKEKRLVHHSEKLAVAFGLL---STSYGE 626
+ + ++P E+ L+ + L+ + E
Sbjct: 544 LVNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 46/252 (18%), Positives = 73/252 (28%), Gaps = 85/252 (33%)
Query: 418 EALRLFEWMLETNIPPTNIT--FV-SVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG--- 471
LRLF W L + + FV VL + + + E
Sbjct: 63 GTLRLF-WTLLSK--QEEMVQKFVEEVL------------RINYKFLMSPIKTEQRQPSM 107
Query: 472 --EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA-----LKAANHFLQLEPSNAVPYV 524
Y D L + F +++ LK L+L P+ V
Sbjct: 108 MTRMYIEQRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQALLELRPA---KNV 153
Query: 525 MLANIY--AASGKWEEVATIRRLMRDRGVQKKPGFS--WIEVKKQ--------------- 565
++ SGK + VQ K F W+ +K
Sbjct: 154 LI---DGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 566 --MHVFVAE-DGSHPMIKEIHNYLEEMSRKMKQAGYVPDKEKRL-----VHHSEKLAVAF 617
+ + D S + IH+ E+ R +K Y E L V +++ AF
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLLNVQNAKAWN-AF 262
Query: 618 G-----LLSTSY 624
LL+T +
Sbjct: 263 NLSCKILLTTRF 274
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.6 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.58 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.57 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.4 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.37 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.36 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.35 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.34 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.34 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.34 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.32 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.31 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.27 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.27 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.27 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.26 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.26 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.24 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.24 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.22 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.21 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.2 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.18 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.16 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.06 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.05 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.05 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.99 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.98 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.96 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.9 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.9 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.78 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.76 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.73 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.72 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.66 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.66 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.62 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.57 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.55 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.55 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.51 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.5 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.5 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.48 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.46 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.45 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.43 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.42 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.41 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.4 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.34 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.3 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.25 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.24 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.16 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.16 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.16 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.11 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.1 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.06 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.06 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.05 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.04 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.02 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.0 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.0 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.0 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.96 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.94 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.92 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.89 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.89 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.89 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.89 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.85 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.85 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.77 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.74 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.72 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.7 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.68 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.66 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.66 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.64 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.63 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.57 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.52 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.45 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.43 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.34 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.23 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.1 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.01 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.79 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.6 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.41 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.18 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.35 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.18 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.43 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.49 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.3 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.16 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.05 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.68 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 88.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.14 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.48 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.01 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.51 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.75 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 82.54 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.27 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.97 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.08 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 80.91 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.06 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=359.19 Aligned_cols=469 Identities=9% Similarity=-0.009 Sum_probs=403.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcC
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQL 79 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g 79 (677)
|+.+++.+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|.++|+.+.. +++.+++.++.+|.++|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 678999999999999999999999965 46889999999999999999999999999954 88999999999999999
Q ss_pred ChhHHHHHhccCCC-C------------------CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHH
Q 037537 80 RIASARQLFDQIPQ-P------------------DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITA 140 (677)
Q Consensus 80 ~~~~A~~~f~~m~~-~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 140 (677)
++++|.++|+++.. . +..+|+.++.+|.+.|++++|+++|++|.+.+ |+..+....+..
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~ 242 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVS 242 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHH
Confidence 99999999995433 3 47899999999999999999999999999853 655443333333
Q ss_pred -hhcchh-hHHHH----HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCC--CCeeeHHHHHHHHHhCCCc
Q 037537 141 -SSNNLC-LIKQL----HCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREG 212 (677)
Q Consensus 141 -~~~~~~-~~~~i----~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~~li~~~~~~g~~ 212 (677)
....+. ....+ +..+...+......+++.++.+|.+.|++++|.++|+++ .. ++..+|+.++.+|.+.|++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI-NGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS-TTGGGCHHHHHHHHHHHHHTTCH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh-hcCCchHHHHHHHHHHHHHhcCH
Confidence 222222 22111 333444444455567777889999999999999999999 44 7899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
++|+++|++|.+.+. .+..++..++.++...|++++|.+++..+.+.. +.+..+++.++.+|.++|+ +++|.++|++
T Consensus 322 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK-ISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc-HHHHHHHHHH
Confidence 999999999998653 377889999999999999999999999999764 6678899999999999999 9999999998
Q ss_pred CC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCcc
Q 037537 293 IP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 293 ~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~ 369 (677)
+. ..+..+|+.++..|.+. |++++|+++|++|.+. .|+. .
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~----------------------------------~ 441 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIE-GEHDQAISAYTTAARL--FQGT----------------------------------H 441 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHT--TTTC----------------------------------S
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--Cccc----------------------------------h
Confidence 75 35678999999999999 9999999999999875 3321 5
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET----NIPPT--NITFVS 440 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ 440 (677)
.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|++|.+. +..|+ ..+|..
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 6678899999999999999999998864 57889999999999999999999999999886 66888 689999
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
+..+|...|++++|.++|+.+.+. + +.+..+|..+..+|.+.|++++|.+.++++ ++++|+++
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~ 584 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLL-S-TNDANVHTAIALVYLHKKIPGLAITHLHES---------------LAISPNEI 584 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HhcCCCCh
Confidence 999999999999999999999876 2 347899999999999999999999999877 68899999
Q ss_pred hhHHHHHHHHHh
Q 037537 521 VPYVMLANIYAA 532 (677)
Q Consensus 521 ~~~~~l~~~y~~ 532 (677)
..|..|.++|..
T Consensus 585 ~~~~~l~~~~~~ 596 (597)
T 2xpi_A 585 MASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=342.02 Aligned_cols=461 Identities=9% Similarity=-0.026 Sum_probs=271.4
Q ss_pred HHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHH
Q 037537 75 YARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLH 152 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~ 152 (677)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..++...++ .+..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44556666666667666666677777777777777777777777777763 34666666667777766666 555555
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCC------------------CeeeHHHHHHHHHhCCCchH
Q 037537 153 CLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIK------------------DEVSWNSMVVAYGQHREGLE 214 (677)
Q Consensus 153 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------------------~~~~~~~li~~~~~~g~~~~ 214 (677)
..+.. .++++.+++.++.+|.++|++++|.++|+++.+.. +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 54432 26778889999999999999999999999651222 47889999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHH--HHH-HHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHH
Q 037537 215 ALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGG--LQF-HAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVF 290 (677)
Q Consensus 215 A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f 290 (677)
|+++|++|.+.+ |+ ...+..+...+...+..+.. ..+ +..+...+..+...+++.++.+|.++|+ +++|.++|
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~ 295 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE-LRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch-HHHHHHHH
Confidence 999999998854 44 33333333322222111110 011 2222222333333444445555555555 56666666
Q ss_pred hhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccC
Q 037537 291 EEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSN 367 (677)
Q Consensus 291 ~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~ 367 (677)
+++.+ ++..+|+.++.+|.+. |++++|+++|++|.+.+ ..+..++..++..+...| .+.+..++..+.+. .|+
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 371 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVR-SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPE 371 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred HHhhcCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--Ccc
Confidence 55554 5555566666666555 55566666666555443 124445555555555555 55555555555522 222
Q ss_pred ccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 368 RISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 368 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
...+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 255555555666666666666665555432 234455556666666666666666666555542 3345555555555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCh--HH----------
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM-------PFNPGS--IA---------- 505 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~--~~---------- 505 (677)
|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+. ..
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 55666666666666555543 1224555555566666666666665555554 223332 11
Q ss_pred -------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 506 -------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 506 -------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
....+++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33444557888999999999999999999999999999999874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=254.63 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHCCCCCCH-hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 214 EALQLFQEMVSLQLGLDM-YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
.+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. ..
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-~~-------- 78 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-AT-------- 78 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-CS--------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-hh--------
Confidence 344555666666655443 35677777777777777777777777777777777777777777777654 11
Q ss_pred CCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchh
Q 037537 293 IPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVN 372 (677)
Q Consensus 293 ~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 372 (677)
...+. +..++|+++|++|...|+.||..||
T Consensus 79 --------------~~~~~-~~l~~A~~lf~~M~~~G~~Pd~~ty----------------------------------- 108 (501)
T 4g26_A 79 --------------ESSPN-PGLSRGFDIFKQMIVDKVVPNEATF----------------------------------- 108 (501)
T ss_dssp --------------SSSCC-HHHHHHHHHHHHHHHTTCCCCHHHH-----------------------------------
T ss_pred --------------hhhhc-chHHHHHHHHHHHHHhCCCCCHHHH-----------------------------------
Confidence 11234 6688999999999999999996665
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
|+||++|+++|++++|.++|++|.+ ||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 6777777888888888888888753 788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 449 GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
|++++|.+++++|++. |..|+..||+.+++.+.+.
T Consensus 189 g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 9999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=249.97 Aligned_cols=182 Identities=11% Similarity=0.019 Sum_probs=163.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-----------hHHHHHHHHHHhCCCCChh
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-----------LIKQLHCLAIYCGFDHYAS 165 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~~i~~~~~~~g~~~~~~ 165 (677)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. .+.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999986542 5778888888889899999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT 242 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 242 (677)
+||+||.+|++.|++++|.++|++| +..||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998 7788999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK 278 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 278 (677)
+.|++++|.+++++|.+.|..|+..+++.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999988888876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-24 Score=221.53 Aligned_cols=368 Identities=14% Similarity=0.124 Sum_probs=253.5
Q ss_pred HHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHH
Q 037537 74 AYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQ 150 (677)
Q Consensus 74 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 150 (677)
.+.+.|++++|.+.|+.+.+ | +...+..+...+.+.|++++|...++...+..
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------------ 63 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------------ 63 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------
Confidence 33445555555555544432 2 22334444455555555555555555544321
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 037537 151 LHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLG 228 (677)
Q Consensus 151 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 228 (677)
+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+.+.|++++|++.|+++.+. .
T Consensus 64 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 131 (388)
T 1w3b_A 64 ----------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--N 131 (388)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--C
T ss_pred ----------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 223344455566666666666666666665 2223 2335666666666666666666666666653 2
Q ss_pred CCH-hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHH
Q 037537 229 LDM-YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTM 304 (677)
Q Consensus 229 pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~l 304 (677)
|+. ..+..+...+...|++++|.+.+..+++.. +.+..+++.+...|.+.|+ +++|...|+++. ..+...|..+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 432 334445555566666666666666666553 3345566666666666666 777777776654 2334566666
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC
Q 037537 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN 384 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 384 (677)
...+... |++++|+..|++.... .|+. ..++..+...|.+.|+
T Consensus 210 g~~~~~~-~~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 210 GNVLKEA-RIFDRAVAAYLRALSL--SPNH----------------------------------AVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTT-TCTTHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHc-CCHHHHHHHHHHHHhh--CcCC----------------------------------HHHHHHHHHHHHHcCC
Confidence 7777777 7788888887777653 3432 5567788889999999
Q ss_pred HHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037537 385 LEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMM 461 (677)
Q Consensus 385 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 461 (677)
+++|.+.|+++.+ | +..+|..+...|.+.|++++|++.|+++.+.. +++..++..+...+...|++++|...++.+
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988754 3 45689999999999999999999999999864 667889999999999999999999999999
Q ss_pred HHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 462 KDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 462 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
.+. .| +...+..+..+|.+.|++++|.+.++++ ++++|+++.+|..+..+|...|+
T Consensus 332 l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 332 LEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEA---------------IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH---------------HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred Hhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCCHHHHHhHHHHHHHccC
Confidence 853 45 5778999999999999999999999987 47788899999999998877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-24 Score=219.83 Aligned_cols=355 Identities=15% Similarity=0.168 Sum_probs=301.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 181 (677)
+...+.+.|++++|++.++++.+. .|+.. ..+..+...+.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~--------------------------------~~~~~l~~~~~~~~~~~ 50 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNT--------------------------------GVLLLLSSIHFQCRRLD 50 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCH--------------------------------HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCH--------------------------------HHHHHHHHHHHHcCCHH
Confidence 345677899999999999988765 34433 33355567788999999
Q ss_pred HHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 182 EAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 182 ~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
+|...++.. ..+.+..+|+.+...|.+.|++++|++.|+++.+. .|+ ..++..+..++...|++++|.+.+..++
T Consensus 51 ~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 51 RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999877 23446778999999999999999999999999874 454 5678999999999999999999999999
Q ss_pred HhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcc
Q 037537 259 KSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDC 335 (677)
Q Consensus 259 ~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 335 (677)
+.. +.+...+..+...|...|+ +++|.+.|+++. ..+..+|+.+...+.+. |++++|+..|+++... .|+.
T Consensus 129 ~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~--~p~~- 202 (388)
T 1w3b_A 129 QYN-PDLYCVRSDLGNLLKALGR-LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTL--DPNF- 202 (388)
T ss_dssp HHC-TTCTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--CTTC-
T ss_pred HhC-CCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCCc-
Confidence 875 4455677788888999899 999999999875 24567899999999999 9999999999999874 3442
Q ss_pred hHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHH
Q 037537 336 SFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQ 412 (677)
Q Consensus 336 t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 412 (677)
...+..+...|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 203 ---------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 203 ---------------------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 55677888999999999999999987653 357789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHH
Q 037537 413 HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (677)
.|++++|++.|+++.+.+ +.+..++..+...+...|++++|...|+.+.+. .+++...+..+...|.+.|++++|.+
T Consensus 250 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999953 334778999999999999999999999999975 34578899999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 493 LIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.++++ +++.|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 327 ~~~~a---------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 327 LYRKA---------------LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHH---------------TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHH---------------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99987 3667888999999999999999999999999998763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-21 Score=204.73 Aligned_cols=428 Identities=11% Similarity=0.004 Sum_probs=286.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhC
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADC 109 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 109 (677)
..+..+...+.+.|++++|...|+++.. |++.++..+..+|.+.|++++|...|+.+.+ | +..+|..+...|.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 3455666777888888888888888877 7888888888888888888888888887653 3 456788899999999
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
|++++|+..|+++.+.+ +++......++..+.... ....+.+.+..
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~ 132 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQ---------------------------------AMSKLKEKFGD 132 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHH---------------------------------HHHHHTTC---
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHH---------------------------------HHHHHHHHHHH
Confidence 99999999999988765 233333333332211111 01111111100
Q ss_pred c---CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC--------CCC-HhHHHHHHHHHc---cCCChHHHHHHH
Q 037537 190 M---GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL--------GLD-MYTLASILTAFT---SLEDLVGGLQFH 254 (677)
Q Consensus 190 m---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------~pd-~~t~~~ll~a~~---~~~~~~~a~~~~ 254 (677)
+ ...|+...++.-...............+...+..... .|+ ...+......+. +.|+++.|...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 0 0000000000000000000011111111111100000 011 222222222222 366777777777
Q ss_pred HHHHH-----hCC--------CCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHH
Q 037537 255 AHLIK-----SGF--------HQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 255 ~~~~~-----~g~--------~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
..+.+ ..- +.+..++..+...|...|+ +++|...|+++. .|+...|..+...|... |++++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~A~ 290 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND-PLGAHEDIKKAIELFPRVNSYIYMALIMADR-NDSTEYY 290 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHTS-SCCTTGG
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCccHHHHHHHHHHHHHC-CCHHHHH
Confidence 77666 211 2234566677777777777 888888887764 24466777777788877 8888888
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--
Q 037537 320 GCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-- 397 (677)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-- 397 (677)
..|+++... .|+. ..++..+...|.+.|++++|...|++..+
T Consensus 291 ~~~~~~~~~--~~~~----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 291 NYFDKALKL--DSNN----------------------------------SSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp GHHHHHHTT--CTTC----------------------------------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHhhc--CcCC----------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888887753 2322 55667888889999999999999987643
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hH
Q 037537 398 -HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GE 472 (677)
Q Consensus 398 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 472 (677)
.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.|+ ..
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 413 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 456789999999999999999999999998853 445778889999999999999999999999865222222 33
Q ss_pred HHHHHHHHHhh---cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 473 HYSCMIDLLGR---AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 473 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..+...|.+ .|++++|.+.++++ +++.|+++.+|..++.+|...|++++|...+++..+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKA---------------SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 88999999999 99999999999876 4677889999999999999999999999999998875
Q ss_pred C
Q 037537 550 G 550 (677)
Q Consensus 550 g 550 (677)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=192.18 Aligned_cols=295 Identities=15% Similarity=0.099 Sum_probs=216.1
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 037537 195 DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLID 274 (677)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 274 (677)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34445566666666666666666666665432 1245555556666666666666666666666554 334556666666
Q ss_pred HHHHcCCCHHHHHHHHhhCCC--CC-h---hhHHHHH------------hhhcccCCCHHHHHHHHHHHhhcCCCCCcch
Q 037537 275 LYAKCSGDMRDCMKVFEEIPQ--PD-L---VLWNTMI------------SGYSQKEEYSDQALGCFKKLNRVGYHPDDCS 336 (677)
Q Consensus 275 ~y~~~g~~~~~A~~~f~~~~~--~~-~---~~~~~li------------~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t 336 (677)
.|.+.|+ +++|.+.|+++.+ |+ . ..|..++ ..+.+. |++++|+..|+++.+. .|+.
T Consensus 103 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~--~~~~-- 176 (450)
T 2y4t_A 103 LLLKQGK-LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEV--CVWD-- 176 (450)
T ss_dssp HHHHTTC-HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHcCC-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC--
Confidence 6666666 7777766666543 22 2 4444443 336677 8999999999998864 3332
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHc
Q 037537 337 FVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQH 413 (677)
Q Consensus 337 ~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 413 (677)
..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...
T Consensus 177 --------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 177 --------------------------------AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred --------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 56678888999999999999999988764 4678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCccC-----hHHHH
Q 037537 414 GIGMEALRLFEWMLETNIPPTN-ITFVSV------------LSACAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYS 475 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~ 475 (677)
|++++|+..|+++.+. .|+. ..+..+ ...|.+.|++++|..+|+.+.+. .|+ ..+|.
T Consensus 225 g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 225 GDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKE 299 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence 9999999999999874 4553 444443 67888999999999999999875 454 45788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..+|.+.|++++|.+.++++ ++++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEV---------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8999999999999999999876 4667888899999999999999999999999998774
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=195.42 Aligned_cols=417 Identities=10% Similarity=0.016 Sum_probs=261.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 80 (677)
..-..+...|+++.|...++.+++.. |++..+..+..+|.+.|++++|.+.++.+.+ .+..++..+..+|.+.|+
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 44567888999999999999999987 6899999999999999999999999999887 456789999999999999
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHH
Q 037537 81 IASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLA 155 (677)
Q Consensus 81 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~ 155 (677)
+++|...|+.+.. ++......++..+........+.+.+..+...+..|+...+..-......... ....+....
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 9999999988753 34445555565555544444444444444333333332222111100000000 001111111
Q ss_pred HHhCC---------CCChhHHHHHHHHHH---hcCChhHHHHHHhhc-C-----C--CC--------CeeeHHHHHHHHH
Q 037537 156 IYCGF---------DHYASVNNSLLTCYS---RNGFLDEAKRVFYEM-G-----E--IK--------DEVSWNSMVVAYG 207 (677)
Q Consensus 156 ~~~g~---------~~~~~~~~~li~~~~---~~g~~~~A~~~f~~m-~-----~--~~--------~~~~~~~li~~~~ 207 (677)
..... +.+...+..+...+. +.|++++|...|+++ . . .| +...|..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 11100 111222333333333 267777777777766 1 1 11 2345666677777
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHH
Q 037537 208 QHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCM 287 (677)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~ 287 (677)
..|++++|+..|+++.+.. |+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+ +++|.
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~ 324 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN-YDQAG 324 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC-TTHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC-HHHHH
Confidence 7777777777777776644 336666666677777777777777777776653 3455566667777777776 77777
Q ss_pred HHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhc
Q 037537 288 KVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEI 364 (677)
Q Consensus 288 ~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~ 364 (677)
..|++.. ..+...|..+...|... |++++|+..|+++.+. .|+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~------------------------------ 371 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRE-NKFDDCETLFSEAKRK--FPEA------------------------------ 371 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTT-TCHHHHHHHHHHHHHH--STTC------------------------------
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--cccC------------------------------
Confidence 7776643 23455666666666666 7777777777766553 2221
Q ss_pred ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-C------cchHHHHHHHHHH---cCChHHHHHHHHHHHHCCCC
Q 037537 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-N------TVSLNSMIAGYAQ---HGIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 365 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~ 432 (677)
..++..+...|.+.|++++|...|+++.+ | + ...|..+...|.. .|++++|...|+++.+.. +
T Consensus 372 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 446 (514)
T 2gw1_A 372 ----PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P 446 (514)
T ss_dssp ----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c
Confidence 44556677777778888888777776643 1 1 2267777777777 788888888888877743 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.+..++..+...+...|++++|...|+.+.+.
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566777777777888888888888877754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-19 Score=193.99 Aligned_cols=426 Identities=11% Similarity=0.011 Sum_probs=259.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYAD 108 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 108 (677)
..+..+...+.+.|++++|...|+.+.. .++.++..+...|.+.|++++|.+.|+.+.+ .+..+|..+...|..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4455555566666666666666666555 3445566666666666666666666665542 234555666666666
Q ss_pred CCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHH
Q 037537 109 CGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCG--FDHYASVNNSLLTCYSRNGFLDEAK 184 (677)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~ 184 (677)
.|++++|+..|+.+. ..|+..... +..+...+. .+...+..++... ..+........+..|....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS---LNGDFDGAS--IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHh---cCCCCChHH--HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 666666666664221 122211110 000000000 1111111111100 0000011122333344445555555
Q ss_pred HHHhhcCCCCCee---eHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCCH-hHHHHHHHHHccCCChHHHHH
Q 037537 185 RVFYEMGEIKDEV---SWNSMVVAYGQH--------REGLEALQLFQEMVSLQLGLDM-YTLASILTAFTSLEDLVGGLQ 252 (677)
Q Consensus 185 ~~f~~m~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~ 252 (677)
..+... ...+.. .+..+...+... |++++|+.+|+++.+.. |+. ..+..+
T Consensus 181 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~--------------- 242 (537)
T 3fp2_A 181 SSVNTS-SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENA--------------- 242 (537)
T ss_dssp HTSCCC-CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH---------------
T ss_pred HHHhhc-cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHH---------------
Confidence 444444 222211 122222221111 24455555555554321 221 111000
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC
Q 037537 253 FHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330 (677)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~ 330 (677)
..++..+...|...|+ +++|...|++.. .|+...|..+...+... |++++|+..|+++.+.
T Consensus 243 -------------~~~~~~~g~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~-- 305 (537)
T 3fp2_A 243 -------------ALALCYTGIFHFLKNN-LLDAQVLLQESINLHPTPNSYIFLALTLADK-ENSQEFFKFFQKAVDL-- 305 (537)
T ss_dssp -------------HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCS-SCCHHHHHHHHHHHHH--
T ss_pred -------------HHHHHHHHHHHHhccc-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCHHHHHHHHHHHhcc--
Confidence 1134445556666677 788877777764 35567788888888888 8999999999988764
Q ss_pred CCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHH
Q 037537 331 HPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMI 407 (677)
Q Consensus 331 ~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li 407 (677)
.|+. ..++..+...|.+.|++++|...|++..+ .+...|..+.
T Consensus 306 ~~~~----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 351 (537)
T 3fp2_A 306 NPEY----------------------------------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351 (537)
T ss_dssp CTTC----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH
T ss_pred CCCC----------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2332 55678888899999999999999988753 3567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhh
Q 037537 408 AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGR 483 (677)
Q Consensus 408 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~ 483 (677)
..|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 44567888999999999999999999999886521111 12234455677777
Q ss_pred c----------CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 484 A----------GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 484 ~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
. |++++|...+++. ++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a---------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKA---------------CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhccchhhhHhHHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7 9999999999876 57788899999999999999999999999999988754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=195.00 Aligned_cols=309 Identities=12% Similarity=0.057 Sum_probs=256.3
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 238 (677)
+.+...+..+...|.+.|++++|..+|+++ ..+.+..+|..+...|.+.|++++|+..|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 345667888999999999999999999988 2334678899999999999999999999999988642 3577888999
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCch---hhHHHH------------HHHHHHcCCCHHHHHHHHhhCC---CCChhh
Q 037537 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNS---HIGSGL------------IDLYAKCSGDMRDCMKVFEEIP---QPDLVL 300 (677)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~~A~~~f~~~~---~~~~~~ 300 (677)
.++...|+++.|.+.+..+.+.. +.+. ..+..+ ...|.+.|+ +++|...|+++. ..+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999998764 3333 555555 344888899 999999999875 356788
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHH
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYS 380 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~ 380 (677)
|..+...|.+. |++++|++.|+++.+. .|+. +.++..+...|.
T Consensus 180 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~----------------------------------~~~~~~l~~~~~ 222 (450)
T 2y4t_A 180 RELRAECFIKE-GEPRKAISDLKAASKL--KNDN----------------------------------TEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHT-TCGGGGHHHHHHHHHH--HCSC----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHHHHH
Confidence 99999999999 9999999999998864 2221 566788889999
Q ss_pred ccCCHHHHHHHHhcCCC--C-CcchHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHH
Q 037537 381 KCGNLEDARRLFDRMPE--H-NTVSLNSM------------IAGYAQHGIGMEALRLFEWMLETNIPPT-----NITFVS 440 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ 440 (677)
+.|++++|...|+++.+ | +...|..+ ...|...|++++|+..|+++.+. .|+ ...+..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 99999999999988754 3 33445444 78899999999999999999984 455 347888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
+...+.+.|++++|...++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ++++|++
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------l~~~p~~ 362 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETA---------------QEHNEND 362 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTSSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHhCcch
Confidence 889999999999999999999865 34 6789999999999999999999999877 5778888
Q ss_pred chhHHHHHHH
Q 037537 520 AVPYVMLANI 529 (677)
Q Consensus 520 ~~~~~~l~~~ 529 (677)
+..+..+..+
T Consensus 363 ~~~~~~l~~~ 372 (450)
T 2y4t_A 363 QQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888833
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-16 Score=160.34 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=197.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHc
Q 037537 200 NSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKC 279 (677)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 279 (677)
..+...+...|++++|+..|+++.+... .+..++..+...+...|+++.|...+..+++.. +.+...+..+...|.+.
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 3334444444444444444444443211 123344444444444444444444444444432 22334444455555555
Q ss_pred CCCHHHHHHHHhhCCC--C----ChhhHHH------------HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 037537 280 SGDMRDCMKVFEEIPQ--P----DLVLWNT------------MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI 341 (677)
Q Consensus 280 g~~~~~A~~~f~~~~~--~----~~~~~~~------------li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (677)
|+ .++|...|++..+ | +...|.. +...+... |++++|++.|+++.+. .|+.
T Consensus 85 ~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~--~~~~------- 153 (359)
T 3ieg_A 85 GK-LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEV--CVWD------- 153 (359)
T ss_dssp TC-HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC-------
T ss_pred CC-hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CCCc-------
Confidence 55 5555555554432 2 1222222 24566777 9999999999988764 3332
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHH
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGME 418 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 418 (677)
..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++
T Consensus 154 ---------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 154 ---------------------------AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred ---------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55667888899999999999999998754 466789999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-----HHHHHHHHH
Q 037537 419 ALRLFEWMLETNIPPT-NITFV------------SVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-----EHYSCMIDL 480 (677)
Q Consensus 419 A~~l~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~ 480 (677)
|...|++..+. .|+ ..++. .+...+...|++++|...++.+.+. .|+. ..+..+...
T Consensus 207 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 207 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 99999999985 344 33333 2255688999999999999999876 3442 335567889
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
|.+.|++++|.+.+++. ++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 282 ~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEV---------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999876 4678889999999999999999999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=172.18 Aligned_cols=413 Identities=9% Similarity=0.050 Sum_probs=294.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhc
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQ 78 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 78 (677)
|..+-..+...|+++.|...++.+++.. |.++..+..+...|.+.|++++|.+.++++.. .+..++..+...|...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 3445668889999999999999999987 77889999999999999999999999999887 4567889999999999
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhc------CCCCCcccHHHHHHHhhcchhhHHHHH
Q 037537 79 LRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREK------RFDTDGFTLSGLITASSNNLCLIKQLH 152 (677)
Q Consensus 79 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~~i~ 152 (677)
|++++|...|+.+. .+....+..+..+...+...+|...++++... ...|+.......+..+ .....+
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~- 180 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF----DSHLEV- 180 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS----CHHHHH-
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc----ChHHHH-
Confidence 99999999997443 23333334455666677778999999998653 2234433333332211 100000
Q ss_pred HHHHHhCCCCChh---HHHHHHHHHHhc--------CChhHHHHHHhhc-CCCCC--------eeeHHHHHHHHHhCCCc
Q 037537 153 CLAIYCGFDHYAS---VNNSLLTCYSRN--------GFLDEAKRVFYEM-GEIKD--------EVSWNSMVVAYGQHREG 212 (677)
Q Consensus 153 ~~~~~~g~~~~~~---~~~~li~~~~~~--------g~~~~A~~~f~~m-~~~~~--------~~~~~~li~~~~~~g~~ 212 (677)
.. .......+.. ....+...+... |++++|..+|+++ ...|+ ..+|..+...+...|++
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SS-VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HT-SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HH-HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 00 0001111111 333444343332 4789999999998 33343 22467777888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
++|+..|++..+. .|+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|...|+ +++|...|++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD-YKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 9999999999885 4667888889999999999999999999999875 4567788889999999888 9999999987
Q ss_pred CC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCcc
Q 037537 293 IP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 293 ~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~ 369 (677)
.. ..+...|..+...|... |++++|+..|+++.+. .|+. .
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~--~~~~----------------------------------~ 378 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQ-GKFTESEAFFNETKLK--FPTL----------------------------------P 378 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC----------------------------------T
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------h
Confidence 65 34567788888888888 9999999999888764 2332 4
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--C-------CcchHHHHHHHHHHc----------CChHHHHHHHHHHHHCC
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--H-------NTVSLNSMIAGYAQH----------GIGMEALRLFEWMLETN 430 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-------~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g 430 (677)
.++..+...|.+.|++++|...|+++.+ | ....+..+...|... |++++|+..|++..+..
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 4566777888888888888888877643 1 111234445666666 88888888888887753
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+.+..++..+...+...|++++|...|+.+.+.
T Consensus 459 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 -PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344667777888888888888888888888764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-16 Score=157.76 Aligned_cols=310 Identities=12% Similarity=0.056 Sum_probs=247.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 241 (677)
+..+..+...+.+.|++++|...|+++ ..+.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 445667778899999999999999987 223356788999999999999999999999998753 12567888888899
Q ss_pred ccCCChHHHHHHHHHHHHhCCC--CchhhHHHH------------HHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHH
Q 037537 242 TSLEDLVGGLQFHAHLIKSGFH--QNSHIGSGL------------IDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTM 304 (677)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~l 304 (677)
...|+++.|...+..+.+.... .+...+..+ ...|...|+ +++|.+.|+++. ..+...|..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD-YTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999876410 244455444 578888899 999999999875 3566788888
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC
Q 037537 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN 384 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 384 (677)
...+... |++++|+..|++.... .|+. ..++..+...|.+.|+
T Consensus 161 ~~~~~~~-~~~~~A~~~~~~~~~~--~~~~----------------------------------~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 161 AECFIKE-GEPRKAISDLKAASKL--KSDN----------------------------------TEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHTT--CSCC----------------------------------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHHHHHHcCC
Confidence 8999999 9999999999998864 3442 5566778888889999
Q ss_pred HHHHHHHHhcCCC--C-CcchHH------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHH
Q 037537 385 LEDARRLFDRMPE--H-NTVSLN------------SMIAGYAQHGIGMEALRLFEWMLETNIPPTN-----ITFVSVLSA 444 (677)
Q Consensus 385 ~~~A~~~~~~~~~--~-~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a 444 (677)
+++|...|+...+ | +...|. .+...+...|++++|+..|+++.+.. |+. ..+..+...
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence 9999999987754 2 233333 23667899999999999999999853 443 234456778
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+...|++++|...++...+. .| +...+..+...|.+.|++++|.+.+++. ++++|+++..+
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~~~ 343 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAA---------------QEHNENDQQIR 343 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhcCCCChHHH
Confidence 89999999999999999875 44 6788999999999999999999999977 57788888888
Q ss_pred HHHHHHHHh
Q 037537 524 VMLANIYAA 532 (677)
Q Consensus 524 ~~l~~~y~~ 532 (677)
..|..++..
T Consensus 344 ~~l~~~~~~ 352 (359)
T 3ieg_A 344 EGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=161.17 Aligned_cols=289 Identities=13% Similarity=0.109 Sum_probs=108.7
Q ss_pred ccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 46 KCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 46 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
+.|++++|.+.++++..| .+|+.|..++.+.|++++|.+.|.+. +|..+|..++..+.+.|++++|...++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 667788888888888544 48888888888888888888888653 56668888888888888888888866666553
Q ss_pred CCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHH
Q 037537 126 RFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMV 203 (677)
Q Consensus 126 g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li 203 (677)
.+++.+.+.++.++.+.++ .+.+++. .|+...|+.+.+.|...|.+++|...|..+ . .|..++
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-~-----n~~~LA 155 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-S-----NFGRLA 155 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-T-----CHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-----hHHHHH
Confidence 3445666666666666655 3333221 345556677777777777777777777776 2 577777
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCH
Q 037537 204 VAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDM 283 (677)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 283 (677)
.++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +...+.-...++..|.+.|. +
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~-~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGY-F 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCC-H
Confidence 7777777777777777766 2567777777777777777777443322 12222233456677777777 7
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHH
Q 037537 284 RDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTI 360 (677)
Q Consensus 284 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~ 360 (677)
++|..+++.... .....|+-|--.|++- ++++.++.++... ...-...+|++|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~------~~ini~k~~~~~~~-------------- 281 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFW------SRVNIPKVLRAAEQ-------------- 281 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHS------TTSCHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH------HHhcCcHHHHHHHH--------------
Confidence 777777766543 3344566665555543 2344444333222 12334456666665
Q ss_pred HhhcccCccchhHHHHHHHHccCCHHHHHHHHhcC
Q 037537 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRM 395 (677)
Q Consensus 361 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 395 (677)
..+|..++-.|.+.++++.|....-.-
T Consensus 282 --------~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 282 --------AHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp --------TTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 778888888888888888887765443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-15 Score=151.66 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=217.5
Q ss_pred CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 194 KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 194 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
.+...+..+...+...|++++|+++|+++.+... .+...+..+...+...|+++.|...+..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3445566666666777777777777777765431 234445555566666777777777777776654 44566777777
Q ss_pred HHHHHcC-CCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccCh
Q 037537 274 DLYAKCS-GDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP 349 (677)
Q Consensus 274 ~~y~~~g-~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 349 (677)
..|...| + .++|...|++..+ .+...|..+...+... |++++|+..|++..+.. |+.
T Consensus 98 ~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~--~~~--------------- 158 (330)
T 3hym_B 98 CYYLMVGHK-NEHARRYLSKATTLEKTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLM--KGC--------------- 158 (330)
T ss_dssp HHHHHSCSC-HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT--TTC---------------
T ss_pred HHHHHhhhh-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhc--ccc---------------
Confidence 8888888 6 8888888877542 4566788888888888 89999999998887642 332
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 159 -------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 159 -------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp -------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34456678888899999999999987654 35678899999999999999999999998
Q ss_pred HHCC--------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 427 LETN--------IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 427 ~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
.+.. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a- 296 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTA- 296 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTT-
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHH-
Confidence 8732 1333578899999999999999999999999875 2335778999999999999999999999988
Q ss_pred CCCChHHHHHHHHHhccCCCCchhHHHHHHHH-HhcCChH
Q 037537 499 FNPGSIALKAANHFLQLEPSNAVPYVMLANIY-AASGKWE 537 (677)
Q Consensus 499 ~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y-~~~g~~~ 537 (677)
++++|+++..+..+..++ ...|+.+
T Consensus 297 --------------l~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 --------------LGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp --------------TTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred --------------HccCCCchHHHHHHHHHHHHHhCchh
Confidence 477888999999999988 4556543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-16 Score=157.74 Aligned_cols=332 Identities=13% Similarity=0.073 Sum_probs=159.2
Q ss_pred HhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHH
Q 037537 175 SRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFH 254 (677)
Q Consensus 175 ~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 254 (677)
-+.|++++|.++++++ ..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.++
T Consensus 14 ~~~~~ld~A~~fae~~-~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-NEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-CCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4778999999999999 555 49999999999999999999999753 67889999999999999999999988
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCc
Q 037537 255 AHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDD 334 (677)
Q Consensus 255 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 334 (677)
...++. .+++.+.+.|+.+|.++|+ ++++.++++ .|+..+|+.+...|... |.+++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~-l~e~e~f~~---~pn~~a~~~IGd~~~~~-g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNR-LAELEEFIN---GPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV--------- 148 (449)
T ss_dssp --------------------------C-HHHHTTTTT---CC-----------------CTTTHHHHHHHT---------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCC-HHHHHHHHc---CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHh---------
Confidence 888774 5668899999999999999 999988886 47888999999999999 9999999999977
Q ss_pred chHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHc
Q 037537 335 CSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQH 413 (677)
Q Consensus 335 ~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 413 (677)
..|..+..++.++| .+.+.+....+ .+ +.+|..++.+|...|+++.|......+. .++.....++..|.+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~-~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NS-TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDR 220 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TC-HHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CC-chhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHC
Confidence 37899999999999 99988888777 24 8899999999999999999988877765 3444455789999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCcc------ChHHHHHHHHHHhhcC
Q 037537 414 GIGMEALRLFEWMLETNIPPTNITFVSVLSAC--AHTGKVAEGQKYFSMMKDMFGFEP------EGEHYSCMIDLLGRAG 485 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g 485 (677)
|++++|+.+++..+... +--...|+-+--++ .+.+++.+..+.|..-. +++| +..+|.-++..|..-+
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998644 33344555444444 45667777777776433 5565 4678999999999999
Q ss_pred ChHHHHHHHHhCCCC-CChHH--------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 486 KLTDAERLIEAMPFN-PGSIA--------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 486 ~~~~A~~~~~~m~~~-~~~~~--------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+++.|...+-+-+.. .+... -++..-.++-.| ...+-|..++...=+...+.+++++.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 999998877655322 11111 222222333333 44566666665555666666655543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-18 Score=184.74 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=127.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCC-------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMP-------EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 5689999999999999999999997753 489999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC-HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 442 LSACAHTGK-VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 442 l~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
|.++++.|. .++|.++|++|.+. |+.||..+|++++....|.+-++...++..++.-.|.. |+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~-------------~~~~ 272 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL-------------PPPV 272 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCC-------------CCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCC-------------cccc
Confidence 999999997 57899999999999 99999999999999888876555555543333211111 1223
Q ss_pred hhHHHHHHHHHhcC
Q 037537 521 VPYVMLANIYAASG 534 (677)
Q Consensus 521 ~~~~~l~~~y~~~g 534 (677)
.+-..|.+.|++.|
T Consensus 273 ~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 273 NTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCTTTHHHHCCCS
T ss_pred cchHHHHHHHccCC
Confidence 44556778888766
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-15 Score=151.47 Aligned_cols=267 Identities=12% Similarity=0.073 Sum_probs=223.3
Q ss_pred CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHH
Q 037537 227 LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNT 303 (677)
Q Consensus 227 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~ 303 (677)
.+.+...+..+...+...|+++.|.+++..+.+.. +.+...+..++..+.+.|+ .++|...|+++. ..+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNK-ANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhh-HHHHHHHHHHHHHhCcCCHHHHHH
Confidence 44566677788888888899999999999998875 4556677778888888898 999999998875 346678888
Q ss_pred HHhhhcccCC-CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc
Q 037537 304 MISGYSQKEE-YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC 382 (677)
Q Consensus 304 li~~~~~~~~-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~ 382 (677)
+...+... | ++++|...|++.... .|+. ...+..+...|...
T Consensus 96 l~~~~~~~-~~~~~~A~~~~~~a~~~--~~~~----------------------------------~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 96 VGCYYLMV-GHKNEHARRYLSKATTL--EKTY----------------------------------GPAWIAYGHSFAVE 138 (330)
T ss_dssp HHHHHHHS-CSCHHHHHHHHHHHHTT--CTTC----------------------------------THHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHh--CCcc----------------------------------HHHHHHHHHHHHHc
Confidence 88888888 8 899999999988764 3432 55678888999999
Q ss_pred CCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 383 GNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 383 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. +.+..++..+...+...|++++|...++
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999998754 346778889999999999999999999999864 4557889999999999999999999999
Q ss_pred HhHHhcC-------CccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 460 MMKDMFG-------FEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 460 ~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
.+.+... .......+..+...|.+.|++++|.+.+++. +++.|+++.+|..++.+|..
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA---------------LVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HhhCccchHHHHHHHHHHHH
Confidence 9987521 1334678999999999999999999999876 46788899999999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 037537 533 SGKWEEVATIRRLMRD 548 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~ 548 (677)
.|++++|.+.+++..+
T Consensus 283 ~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 283 MGNFENAVDYFHTALG 298 (330)
T ss_dssp HTCHHHHHHHHHTTTT
T ss_pred hccHHHHHHHHHHHHc
Confidence 9999999999987654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-13 Score=149.47 Aligned_cols=478 Identities=9% Similarity=0.054 Sum_probs=286.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH----------HHhhccccChhH-----
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHH----------AFNQTQHANVFS----- 67 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----------~~~~~~~~~~~~----- 67 (677)
..|+..+-.+++++..+-.++..+..| ..++.++|+|.+.|...++-.+..- +=.-..+.|+..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay 921 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHh
Confidence 457777888888888888899999998 6789999999999987654433210 000111122221
Q ss_pred -----HHHHHHHHHhcCChhH-HHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHh----cCCCCCcccHHHH
Q 037537 68 -----FNVLLAAYARQLRIAS-ARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMRE----KRFDTDGFTLSGL 137 (677)
Q Consensus 68 -----~~~li~~~~~~g~~~~-A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~l 137 (677)
-..||+..-+.+-+.. |+-+.++ .|...|+.++. ..+ +-=.++.+.-.. ....|+.. +..
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~---~~n--~~RR~Lidqv~a~aL~e~~~PeeV--s~~ 991 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLL---ESN--PYRRPLIDQVVQTALSETQDPEEV--SVT 991 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhc---CCc--HHHHHHHHHHHHhhcccccCHHHh--HHH
Confidence 1122222222222221 1111111 22222332221 000 000011111111 11122222 223
Q ss_pred HHHhhcchh--hHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCch
Q 037537 138 ITASSNNLC--LIKQLHCLAIYCG--FDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGL 213 (677)
Q Consensus 138 l~a~~~~~~--~~~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~ 213 (677)
.+++...+. .+-.+++.++..+ +..+....+.|+.+..+. +..+..+..++. ..- ....+...+...|.++
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL-d~~---d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL-DNY---DAPDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh-hhc---cHHHHHHHHHhCCCHH
Confidence 333333333 3333443333211 123445556666666666 455566665555 222 2455777778888888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 214 EALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
+|..+|++.. -.......++. ..+++++|.++...+ .+..+|..+..++.+.|+ +++|...|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~-~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM-VKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC-HHHHHHHHHhc
Confidence 8888888752 11122222322 566788887777654 346788888888888888 88888888765
Q ss_pred CCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchh
Q 037537 294 PQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVN 372 (677)
Q Consensus 294 ~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 372 (677)
.|...|..++..+.+. |++++|.+.|....+.. ++....+.+..++++.+ ++...... + .++ ...+
T Consensus 1132 --dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n-~ad~ 1198 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN-NAHI 1198 (1630)
T ss_pred --CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC-HHHH
Confidence 5666777788888888 88888888888766643 33333334777777777 65433221 1 223 4455
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVA 452 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 452 (677)
..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 66888888888899998888885 47888888888888888888888876 34578888888888888888
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC-CCCChHH--------------------HHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP-FNPGSIA--------------------LKAANH 511 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~--------------------~~~~~~ 511 (677)
.|...... +..+.+.+..++..|.+.|.+++|..+++... .++.... .+....
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 87775543 33456667788888888888888888887652 1221111 111112
Q ss_pred HhccCC-----CCchhHHHHHHHHHhcCChHHHHH
Q 037537 512 FLQLEP-----SNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 512 l~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
-..+.| .+...|.-+.-.|.+.|+|+.|..
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 223333 466779999999999999999984
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-15 Score=147.01 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhcc
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL 347 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (677)
....+..+|...|+ .+.|...++....|+..++..+...+... ++.++|++.++++...+..|+.
T Consensus 36 ~~~~l~r~yi~~g~-~~~al~~~~~~~~~~~~a~~~la~~~~~~-~~~~~A~~~l~~ll~~~~~P~~------------- 100 (291)
T 3mkr_A 36 RDVFLYRAYLAQRK-YGVVLDEIKPSSAPELQAVRMFAEYLASH-SRRDAIVAELDREMSRSVDVTN------------- 100 (291)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHSCTTSCHHHHHHHHHHHHHHCS-TTHHHHHHHHHHHHHSCCCCSC-------------
T ss_pred HHHHHHHHHHHCCC-HHHHHHHhcccCChhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcccCCCC-------------
Confidence 33445677888888 88888888776566777888888888888 8999999999999887767775
Q ss_pred ChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 348 SPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 348 ~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
+.++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.
T Consensus 101 ---------------------~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 101 ---------------------TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456677889999999999999999 4577789999999999999999999999999
Q ss_pred HCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChH
Q 037537 428 ETNIPPTNITF---VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSI 504 (677)
Q Consensus 428 ~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 504 (677)
+. .|+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+..+|.+.|++++|.+.+++.
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a------- 226 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA------- 226 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------
Confidence 85 4664311 12334444569999999999999986 3457889999999999999999999999976
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 037537 505 ALKAANHFLQLEPSNAVPYVMLANIYAASGKWEE-VATIRRLMRDRG 550 (677)
Q Consensus 505 ~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~~g 550 (677)
++++|+++.++..++..+...|++++ +.++++++.+..
T Consensus 227 --------l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 227 --------LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp --------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --------HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 68889999999999999999999986 578998887643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=158.98 Aligned_cols=280 Identities=9% Similarity=-0.045 Sum_probs=179.9
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcc
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQ 310 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 310 (677)
+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|+ +++|...|+++. ..+..+|..+...|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ-ELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2334445555555555555 566655555443 2345566666677777
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHH
Q 037537 311 KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARR 390 (677)
Q Consensus 311 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 390 (677)
. |++++|+..|+++... .|+.......+..... ...+ ......+...+ +.|++++|..
T Consensus 145 ~-g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------~~~~--~~~~~~~~~~~-~~~~~~~A~~ 202 (368)
T 1fch_A 145 E-SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAG----------------GAGL--GPSKRILGSLL-SDSLFLEVKE 202 (368)
T ss_dssp T-TCHHHHHHHHHHHHHT--STTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhh----------------hhcc--cHHHHHHHHHh-hcccHHHHHH
Confidence 7 7777777777777764 2332221110000000 0000 11111223333 7899999999
Q ss_pred HHhcCCC--C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037537 391 LFDRMPE--H---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 391 ~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 465 (677)
.|+++.+ | +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+.
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 280 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL- 280 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9988753 3 46788999999999999999999999999853 445788999999999999999999999999875
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
-+.+...+..+..+|.+.|++++|.+.++++.. .|+.. ....+..|....+|..++.+|...|++++|..+++
T Consensus 281 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 281 -QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR-----GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----CccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 223578899999999999999999999987620 00000 00001122337899999999999999999998876
Q ss_pred H
Q 037537 545 L 545 (677)
Q Consensus 545 ~ 545 (677)
+
T Consensus 355 ~ 355 (368)
T 1fch_A 355 R 355 (368)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-13 Score=149.34 Aligned_cols=381 Identities=12% Similarity=0.067 Sum_probs=255.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHhhccc-c-----ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHH
Q 037537 33 SAYLSNHFILLYSKCGCLSAAHHAFNQTQH-A-----NVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAY 106 (677)
Q Consensus 33 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 106 (677)
++.-....+++|...|.+.+|.++++++.. + +....|.|+.+..+. +........+.... .....+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHH
Confidence 334445566666667777777777766664 1 224455555555555 33333333333322 1234455666
Q ss_pred HhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037537 107 ADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186 (677)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (677)
...|.+++|..+|++... .....+.+ +-..|++++|.++
T Consensus 1060 i~lglyEEAf~IYkKa~~--------------------------------------~~~A~~VL---ie~i~nldrAiE~ 1098 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV--------------------------------------NTSAVQVL---IEHIGNLDRAYEF 1098 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC--------------------------------------HHHHHHHH---HHHHhhHHHHHHH
Confidence 677777777777776421 00011112 2266778888888
Q ss_pred HhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCch
Q 037537 187 FYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNS 266 (677)
Q Consensus 187 f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 266 (677)
.++. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+...++.. ++.
T Consensus 1099 Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1099 AERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred HHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc
Confidence 8876 23557888888888888888888888553 466677778888888888888888888777654 444
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 267 HIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 267 ~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
.+.+.++..|++.++ +++..... ..++...|..+...|... |++++|..+|... ..|..+...+.+
T Consensus 1168 ~Idt~LafaYAKl~r-leele~fI---~~~n~ad~~~iGd~le~e-g~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1168 YVETELIFALAKTNR-LAELEEFI---NGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred cccHHHHHHHHhhcC-HHHHHHHH---hCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 455568888888777 77544332 345666677766777777 8888888888774 267777777777
Q ss_pred cC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 037537 347 LS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEW 425 (677)
Q Consensus 347 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 425 (677)
.| .+.|.+..... .+ ..+|..+..++...|++..|...... ...+...+..++.-|...|.+++|+.+++.
T Consensus 1234 Lge~q~AIEaarKA------~n-~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA------NS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hCCHHHHHHHHHHh------CC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77 77777776655 22 67778888888888999999888765 333455677899999999999999999988
Q ss_pred HHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc------ChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 426 MLETNIPPTNITF--VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP------EGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 426 m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
.+... +-....| ...+.+-.+.+++.++.++|..-. .++| +...|.-++.+|.+.|+++.|...+-
T Consensus 1306 aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1306 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 87643 2223345 444444556677777777777543 4444 46789999999999999999985543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-14 Score=151.63 Aligned_cols=403 Identities=11% Similarity=0.092 Sum_probs=263.1
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCc
Q 037537 22 HALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDL 96 (677)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~ 96 (677)
++..++.. |-+...|..++.. .+.|+++.|+.+|+++.. .+...|..++..+.+.|++++|..+|++..+ |++
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34455554 6677888888884 678999999999999887 3556788899999999999999999998765 776
Q ss_pred chHHHHHHHH-HhCCChhHHHH----HHHHhHhc-CCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHH
Q 037537 97 VSYNTLISAY-ADCGDTESALS----LFKDMREK-RFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSL 170 (677)
Q Consensus 97 ~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~l 170 (677)
..|...+... ...|+.++|.+ +|++.... |..|+. ..+|...
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~--------------------------------~~~w~~~ 127 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS--------------------------------YQIWVDY 127 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC--------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc--------------------------------HHHHHHH
Confidence 7777776533 35677777765 55554432 433332 2333343
Q ss_pred HHHHHh---------cCChhHHHHHHhhcCCCCCe---eeHHHHHHHH-------------HhCCCchHHHHHHHHHH--
Q 037537 171 LTCYSR---------NGFLDEAKRVFYEMGEIKDE---VSWNSMVVAY-------------GQHREGLEALQLFQEMV-- 223 (677)
Q Consensus 171 i~~~~~---------~g~~~~A~~~f~~m~~~~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~-- 223 (677)
+....+ .|+++.|+++|++.-..|+. ..|....... .+.+++.+|..++.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~ 207 (530)
T 2ooe_A 128 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV 207 (530)
T ss_dssp HHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 433332 56777888888776112321 2233222110 12345666776666532
Q ss_pred ----HCC---CCCCH--------hHHHHHHHHHcc----CCCh----HHHHHHHHHHHHhCCCCchhhHHHHHHHHHH--
Q 037537 224 ----SLQ---LGLDM--------YTLASILTAFTS----LEDL----VGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK-- 278 (677)
Q Consensus 224 ----~~g---~~pd~--------~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 278 (677)
+.. +.|+. ..|...+..... .++. +.+..+++++++.. +.+..+|..+...+.+
T Consensus 208 ~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 208 MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 111 23331 233333322211 1222 35667777777763 4567777777777765
Q ss_pred -----cCCCHH-------HHHHHHhhCCC---C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 279 -----CSGDMR-------DCMKVFEEIPQ---P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 279 -----~g~~~~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
.|+ ++ +|..+|++..+ | +...|..++..+.+. |++++|..+|+++.+. .|+..
T Consensus 287 ~~~~~~g~-~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~-g~~~~A~~~~~~al~~--~p~~~------- 355 (530)
T 2ooe_A 287 KLLAEKGD-MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAI--EDIDP------- 355 (530)
T ss_dssp HHHHTTTC-CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHS--SSSCH-------
T ss_pred hhhhhccc-hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHhCc--cccCc-------
Confidence 566 66 78888887652 3 466788888888888 8888888888888763 44421
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcc---hHHHHH-HHHHHcCChHH
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTV---SLNSMI-AGYAQHGIGME 418 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~---~~~~li-~~~~~~g~~~~ 418 (677)
..+|..++..+.+.|++++|.++|++..+.+.. .|.... ..+...|+.++
T Consensus 356 --------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 356 --------------------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred --------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence 125566777777888889999998877552222 222211 12346899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 419 ALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 419 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
|..+|++.++.. +.+...+..++....+.|+.++|+.+|+.........|+ ...|...+....+.|+.+.+.++.++
T Consensus 410 A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 410 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988753 334778888888889999999999999999875333443 44788888888888999999988877
Q ss_pred C
Q 037537 497 M 497 (677)
Q Consensus 497 m 497 (677)
+
T Consensus 489 ~ 489 (530)
T 2ooe_A 489 R 489 (530)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-14 Score=150.41 Aligned_cols=396 Identities=9% Similarity=0.041 Sum_probs=233.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 037537 95 DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCY 174 (677)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~ 174 (677)
|..+|..++. +.+.|++++|..+|+++.+. . +.+...|..++..+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~--------------------------------P~~~~~w~~~~~~~ 56 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--F--------------------------------PSSGRFWKLYIEAE 56 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--C--------------------------------TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--C--------------------------------CCCHHHHHHHHHHH
Confidence 4456666665 35566666666666666643 1 22334455555566
Q ss_pred HhcCChhHHHHHHhhc-CCCCCeeeHHHHHHHH-HhCCCchHHHH----HHHHHHHC-CCCCC-HhHHHHHHHHHcc---
Q 037537 175 SRNGFLDEAKRVFYEM-GEIKDEVSWNSMVVAY-GQHREGLEALQ----LFQEMVSL-QLGLD-MYTLASILTAFTS--- 243 (677)
Q Consensus 175 ~~~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~pd-~~t~~~ll~a~~~--- 243 (677)
.+.|++++|.++|++. ...|++..|...+... ...|+.++|.+ +|++.... |..|+ ...|...+.....
T Consensus 57 ~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 57 IKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 6666666666666665 2234444455544322 23455555443 44444332 33332 3333333333222
Q ss_pred ------CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH-------------HHcCCCHHHHHHHHhh-------CC---
Q 037537 244 ------LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLY-------------AKCSGDMRDCMKVFEE-------IP--- 294 (677)
Q Consensus 244 ------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------------~~~g~~~~~A~~~f~~-------~~--- 294 (677)
.|+++.|..+|..+++........+|....... .+.+. ++.|..++.. +.
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~-~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRD-YMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHCCSSS
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhcccc
Confidence 355566666666665521111112222211110 01123 5556555543 11
Q ss_pred ---CCC--------hhhHHHHHhhhcccC---CCH----HHHHHHHHHHhhcCCCCC-cchHHHHHHHhhc-------cC
Q 037537 295 ---QPD--------LVLWNTMISGYSQKE---EYS----DQALGCFKKLNRVGYHPD-DCSFVCVISACSN-------LS 348 (677)
Q Consensus 295 ---~~~--------~~~~~~li~~~~~~~---~~~----~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-------~~ 348 (677)
.|+ ...|...+.-...+. ++. ++++.+|++.... .|+ ...|......+.. .|
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhcc
Confidence 111 245555553322110 222 3677788877764 343 3344444444433 45
Q ss_pred -hh-------HHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-Cc-chHHHHHHHHHHcCCh
Q 037537 349 -PS-------LGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NT-VSLNSMIAGYAQHGIG 416 (677)
Q Consensus 349 -~~-------~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~ 416 (677)
.+ .+..++...++. +.|+...++..++..+.+.|++++|..+|++..+ | +. ..|..++..+.+.|+.
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence 55 667777666652 2344488889999999999999999999988654 3 22 4788888888889999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPT-NITFVSVLSA-CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERL 493 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 493 (677)
++|.++|++..+. .|+ ...|...... +...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..+
T Consensus 373 ~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 373 KSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999874 333 3333332222 23588999999999988875 34 577888999999999999999999
Q ss_pred HHhCCCCCChHHHHHHHHHhccCCCCc----hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 494 IEAMPFNPGSIALKAANHFLQLEPSNA----VPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~l~~l~p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
|++.. +..|.++ ..|...+......|+.+.+.++.+++.+.
T Consensus 448 ~~~al---------------~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVL---------------TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH---------------HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHH---------------hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98762 3333333 37878888888899999999999888763
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-17 Score=176.47 Aligned_cols=148 Identities=10% Similarity=0.096 Sum_probs=124.0
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhhc------CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFYEM------GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~~m------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
-..+||+||++|+++|++++|.++|++| +..||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457999999999999999999999876 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCh-HHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-----CChhhHHHHHhhhcc
Q 037537 237 ILTAFTSLEDL-VGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----PDLVLWNTMISGYSQ 310 (677)
Q Consensus 237 ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~ 310 (677)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+- ++...+++.++.. +.+.+.+.|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v-L~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV-LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH-HHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH-HHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999985 7899999999999999999999999988777544 5555444444431 123344445555665
Q ss_pred c
Q 037537 311 K 311 (677)
Q Consensus 311 ~ 311 (677)
.
T Consensus 285 d 285 (1134)
T 3spa_A 285 D 285 (1134)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-13 Score=147.92 Aligned_cols=346 Identities=14% Similarity=0.087 Sum_probs=241.9
Q ss_pred cChhHHHHHHHHHHh----cCChhHHHHHhccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHhHhcCCCCCccc
Q 037537 63 ANVFSFNVLLAAYAR----QLRIASARQLFDQIPQ-PDLVSYNTLISAYAD----CGDTESALSLFKDMREKRFDTDGFT 133 (677)
Q Consensus 63 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 133 (677)
.++.....|...|.. .++++.|...|+...+ .+..++..|...|.. .+++++|++.|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 455666666666666 6777777777765443 355666667777776 777777777777766543
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh-
Q 037537 134 LSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSR----NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQ- 208 (677)
Q Consensus 134 ~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~- 208 (677)
++..+..|-.+|.. .+++++|.+.|++.-...+...+..|...|..
T Consensus 110 -----------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 110 -----------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEG 160 (490)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 12222344455555 56777777777776112245556666666766
Q ss_pred ---CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc----CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH---
Q 037537 209 ---HREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS----LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK--- 278 (677)
Q Consensus 209 ---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--- 278 (677)
.+++++|++.|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +......|..+|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 677888888888777754 45566666666655 677888888888777764 45566677777775
Q ss_pred -cCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcc----cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHH
Q 037537 279 -CSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQ----KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLG 352 (677)
Q Consensus 279 -~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 352 (677)
.++ .++|...|++..+ .+...+..+-..|.. . +++++|+..|++..+.|.
T Consensus 235 ~~~~-~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~-~d~~~A~~~~~~a~~~~~---------------------- 290 (490)
T 2xm6_A 235 VTQD-YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGA-KEPLKALEWYRKSAEQGN---------------------- 290 (490)
T ss_dssp SCCC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSS-CCHHHHHHHHHHHHTTTC----------------------
T ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHcCC----------------------
Confidence 456 8888888877543 444555555555554 5 778888888888765431
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHcc-----CCHHHHHHHHhcCCC-CCcchHHHHHHHHHHcC---ChHHHHHHH
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKC-----GNLEDARRLFDRMPE-HNTVSLNSMIAGYAQHG---IGMEALRLF 423 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g---~~~~A~~l~ 423 (677)
+..+..|..+|... ++.++|...|++..+ .+...+..+...|...| +.++|++.|
T Consensus 291 ----------------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 291 ----------------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp ----------------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 33445666677766 889999999887654 45667888888888766 788999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----cCChHHHHHHHH
Q 037537 424 EWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLTDAERLIE 495 (677)
Q Consensus 424 ~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 495 (677)
++..+.| +...+..+-..+.. .++.++|...|+...+. + +...+..|..+|.+ .+++++|.+.|+
T Consensus 355 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 355 RKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998864 56677777777777 78999999999998875 3 46677888888887 899999999998
Q ss_pred hC
Q 037537 496 AM 497 (677)
Q Consensus 496 ~m 497 (677)
+.
T Consensus 428 ~A 429 (490)
T 2xm6_A 428 TA 429 (490)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-15 Score=150.08 Aligned_cols=282 Identities=14% Similarity=0.083 Sum_probs=218.5
Q ss_pred HHhcCChhHHHH-HHhhc----C--CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCC
Q 037537 174 YSRNGFLDEAKR-VFYEM----G--EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLED 246 (677)
Q Consensus 174 ~~~~g~~~~A~~-~f~~m----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 246 (677)
|.-.|++++|.. .|++. + +..+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444578888988 88865 1 11246779999999999999999999999999864 2367788889999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHH---------------HHhhh
Q 037537 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNT---------------MISGY 308 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~~ 308 (677)
++.|...+..+++.. +.+..++..+...|...|+ .++|.+.|+++.. | +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999886 5578899999999999999 9999999998752 2 2222221 13333
Q ss_pred cccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHH
Q 037537 309 SQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDA 388 (677)
Q Consensus 309 ~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 388 (677)
... |++++|+..|+++... .|+.. + ..++..+...|.+.|++++|
T Consensus 192 ~~~-~~~~~A~~~~~~a~~~--~p~~~-------------------------------~-~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 192 LSD-SLFLEVKELFLAAVRL--DPTSI-------------------------------D-PDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHH-HHHHHHHHHHHHHHHH--STTSC-------------------------------C-HHHHHHHHHHHHHTTCHHHH
T ss_pred hhc-ccHHHHHHHHHHHHHh--CcCcc-------------------------------c-HHHHHHHHHHHHHcCCHHHH
Confidence 355 7788888888877764 23310 1 56678889999999999999
Q ss_pred HHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037537 389 RRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 389 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 465 (677)
...|++..+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+.
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 314 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM- 314 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999998753 356789999999999999999999999999853 445788999999999999999999999999865
Q ss_pred CCccC------------hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 466 GFEPE------------GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 466 ~~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|+ ...|..+..+|.+.|+.++|..++++.
T Consensus 315 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 315 --QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred --CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 332 578999999999999999999998754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-13 Score=140.94 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=273.3
Q ss_pred CCcchHHHHHHHHHh----CCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHH
Q 037537 94 PDLVSYNTLISAYAD----CGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNS 169 (677)
Q Consensus 94 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 169 (677)
.|..++..+...|.. .+++++|+..|++..+.| ++..+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~ 80 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------------------------------------YTPAEYV 80 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------------------------------------CHHHHHH
Confidence 466777777777877 889999999998887653 2233355
Q ss_pred HHHHHHh----cCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037537 170 LLTCYSR----NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQ----HREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241 (677)
Q Consensus 170 li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 241 (677)
|-.+|.. .++.++|.+.|++.-...+...+..|...|.. .+++++|+..|++..+.| +...+..+-..+
T Consensus 81 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 157 (490)
T 2xm6_A 81 LGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6667777 88999999999987222356677888888887 789999999999998865 455666666666
Q ss_pred cc----CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH----cCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcc--
Q 037537 242 TS----LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK----CSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQ-- 310 (677)
Q Consensus 242 ~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~-- 310 (677)
.. .++.+.|.+.+....+.| +...+..|..+|.. .++ .++|.+.|++..+ .+..++..+...|..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN-DAISAQWYRKSATSGDELGQLHLADMYYFGI 233 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 55 788999999999988875 56778888888887 667 8899988887653 455666666666664
Q ss_pred --cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCC
Q 037537 311 --KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGN 384 (677)
Q Consensus 311 --~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~ 384 (677)
. +++++|..+|++..+.|. +..+..|..+|.. .++
T Consensus 234 g~~-~~~~~A~~~~~~a~~~~~--------------------------------------~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 234 GVT-QDYTQSRVLFSQSAEQGN--------------------------------------SIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp SSC-CCHHHHHHHHHHHHTTTC--------------------------------------HHHHHHHHHHHHHTTTSSCC
T ss_pred CCC-CCHHHHHHHHHHHHHCCC--------------------------------------HHHHHHHHHHHHCCCCCCCC
Confidence 5 778888888888776431 3344556666666 799
Q ss_pred HHHHHHHHhcCCC-CCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHH
Q 037537 385 LEDARRLFDRMPE-HNTVSLNSMIAGYAQH-----GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG---KVAEGQ 455 (677)
Q Consensus 385 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~ 455 (677)
.++|...|++..+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.
T Consensus 275 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 275 PLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 9999999998765 4666788888888887 89999999999999875 4456666666666656 889999
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhh----cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
++|+...+. .+...+..|..+|.. .+++++|.+.+++... ..++.++..|..+|.
T Consensus 352 ~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-----------------~~~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 352 EWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-----------------QGLSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-----------------CCCHHHHHHHHHHHH
Confidence 999999875 357788888888888 8999999999987631 135678999999999
Q ss_pred h----cCChHHHHHHHHHHHhCCC
Q 037537 532 A----SGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 532 ~----~g~~~~a~~~~~~m~~~g~ 551 (677)
. .+++++|...+++..+.|.
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8 8999999999999988774
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=152.83 Aligned_cols=356 Identities=13% Similarity=0.016 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhc----------C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC------
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEM----------G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ------ 226 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m----------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 226 (677)
...||.|-..|...|+.++|.+.|++. . .....++|+.+...|...|++++|+..|++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345566666777777777777766553 0 11234566777777777777777777766654310
Q ss_pred CCC-CHhHHHHHHHHHc--cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH---HcCCCHHHHHHHHhhCC---CCC
Q 037537 227 LGL-DMYTLASILTAFT--SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYA---KCSGDMRDCMKVFEEIP---QPD 297 (677)
Q Consensus 227 ~~p-d~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---~~g~~~~~A~~~f~~~~---~~~ 297 (677)
..+ ...++.....++. ..+++++|...|..+++.. +.+...+..+...+. ..++ .++|.+.|++.. ..+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~-~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPP-SQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCC-CCCTHHHHHHHHHHCSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhcCCcc
Confidence 111 1233333322222 2345566666666665543 222333333333322 2233 334444443322 122
Q ss_pred hhhHHHHHhhh----cccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhH
Q 037537 298 LVLWNTMISGY----SQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNN 373 (677)
Q Consensus 298 ~~~~~~li~~~----~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 373 (677)
...+..+...+ ... ++.++|.+++++.... .|+...++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~-~~~~~a~~~~~~al~~------------------------------------~~~~~~~~~ 251 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEG-EEEGEGEKLVEEALEK------------------------------------APGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHCC-------CHHHHHHHHHHHH------------------------------------CSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHh------------------------------------CccHHHHHH
Confidence 22332222211 112 3444555555444432 222255667
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCC
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQ-------------------HGIGMEALRLFEWMLETNI 431 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~ 431 (677)
.+...|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++..+..
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 330 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN- 330 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-
Confidence 777777888888888877776653 2 33455555554432 223567777788777643
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh--HHHHHHHH-HHhhcCChHHHHHHHHhC-CCCCChHH--
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG--EHYSCMID-LLGRAGKLTDAERLIEAM-PFNPGSIA-- 505 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~~~~~~-- 505 (677)
+.+..++..+...+...|++++|...|+...+. ...|.. ..+..+.. .+.+.|+.++|.+.+++. ...|+...
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 334567777888888888888888888888764 322221 12223322 234678888888888764 33444333
Q ss_pred ------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEE
Q 037537 506 ------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWI 560 (677)
Q Consensus 506 ------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 560 (677)
....++.++.+|+++.+|..|+.+|...|++++|++.+++..+.|-..+...+|+
T Consensus 410 ~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 4556677889999999999999999999999999999999988775544445554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.5e-15 Score=150.19 Aligned_cols=268 Identities=9% Similarity=-0.007 Sum_probs=187.1
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 037537 195 DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLID 274 (677)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 274 (677)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 45557777777777777777777777776532 223334444555
Q ss_pred HHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhH
Q 037537 275 LYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSL 351 (677)
Q Consensus 275 ~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 351 (677)
.|.+.|+ +++|...|++.. ..+..+|..+...|... |++++|+..|+++.+. .|+.......+.
T Consensus 108 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~~~--------- 174 (365)
T 4eqf_A 108 TQAENEN-EQAAIVALQRCLELQPNNLKALMALAVSYTNT-SHQQDACEALKNWIKQ--NPKYKYLVKNKK--------- 174 (365)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CHHHHCC--------------
T ss_pred HHHHCCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHh--CccchHHHhhhc---------
Confidence 5555555 555555555443 23456677777777777 8888888888888763 232211100000
Q ss_pred HHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C---CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 352 GKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H---NTVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 352 ~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
.. ...+..+...|.+.|++++|...|+++.+ | +..+|..+...|...|++++|++.|+++
T Consensus 175 --------------~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 175 --------------GS-PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------------cc-hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00 34456678889999999999999998764 3 5678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHH
Q 037537 427 LETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA 505 (677)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (677)
.+.. +.+..++..+..++...|++++|...|+.+.+. .| +...+..+..+|.+.|++++|.+.++++.
T Consensus 240 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------- 308 (365)
T 4eqf_A 240 LTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTAL------- 308 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH-------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-------
Confidence 9853 455789999999999999999999999999875 45 47889999999999999999999998762
Q ss_pred HHHHHHHhccCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 506 LKAANHFLQLEPS------------NAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 506 ~~~~~~l~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
++.|+ +...|..|..+|...|+.+.+.++.++
T Consensus 309 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 309 --------SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --------HHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred --------HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 22222 467899999999999999998877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-14 Score=146.26 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=206.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 240 (677)
+...+..+...|.+.|++++|.+.|+++ ..+.+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445888889999999999999999998 223467789999999999999999999999998753 2346777778888
Q ss_pred HccCCChHHHHHHHHHHHHhCCCCch-hhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHH
Q 037537 241 FTSLEDLVGGLQFHAHLIKSGFHQNS-HIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
+...|++++|...+..+++.. |+. ..+..+. .....+..+...+.+. |++++|+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~----------------------~~~~~~~~l~~~~~~~-g~~~~A~ 197 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK----------------------GSPGLTRRMSKSPVDS-SVLEGVK 197 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------CC-HHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc----------------------cchHHHHHHHHHHhhh-hhHHHHH
Confidence 888888888888888777653 111 0110000 1123344556777778 9999999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--
Q 037537 320 GCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-- 397 (677)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-- 397 (677)
..|+++... .|+.. + +.++..+...|.+.|++++|...|++..+
T Consensus 198 ~~~~~al~~--~p~~~-------------------------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 198 ELYLEAAHQ--NGDMI-------------------------------D-PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp HHHHHHHHH--SCSSC-------------------------------C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CcCcc-------------------------------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999875 34310 1 55678888999999999999999998754
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC------
Q 037537 398 -HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE------ 470 (677)
Q Consensus 398 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------ 470 (677)
.+..+|+.+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+
T Consensus 244 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~ 319 (365)
T 4eqf_A 244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL---QRKSRNQQQ 319 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHCC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccCCCcc
Confidence 467789999999999999999999999999853 344788999999999999999999999999865 232
Q ss_pred -------hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 471 -------GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 471 -------~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...|..+..++...|+.+.|.+..++-
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 678999999999999999999998764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=138.97 Aligned_cols=258 Identities=12% Similarity=0.015 Sum_probs=181.0
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 037537 196 EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDL 275 (677)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 275 (677)
...|..+...+...|++++|+.+|+++.+... .+..++..+..++...|+++.|.+.+..+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34455555556666666666666666555321 234455555555556666666666666655543 3344555566666
Q ss_pred HHHcCCCHHHHHHHHhhCCC--C-ChhhHHHH--------------Hh-hhcccCCCHHHHHHHHHHHhhcCCCCCcchH
Q 037537 276 YAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTM--------------IS-GYSQKEEYSDQALGCFKKLNRVGYHPDDCSF 337 (677)
Q Consensus 276 y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~ 337 (677)
|...|+ .++|.+.|+++.. | +...+..+ .. .+... |++++|...++++.+.. |+.
T Consensus 99 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~--~~~--- 171 (327)
T 3cv0_A 99 HTNEHN-ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP-NEYRECRTLLHAALEMN--PND--- 171 (327)
T ss_dssp HHHTTC-HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSH-HHHHHHHHHHHHHHHHS--TTC---
T ss_pred HHHcCC-HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc-ccHHHHHHHHHHHHhhC--CCC---
Confidence 666666 6666666655431 1 12222222 22 35666 88888888888887642 321
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcC
Q 037537 338 VCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHG 414 (677)
Q Consensus 338 ~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 414 (677)
..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|
T Consensus 172 -------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 172 -------------------------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 56678888999999999999999998753 45678999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-------------hHHHHHHHHHH
Q 037537 415 IGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-------------GEHYSCMIDLL 481 (677)
Q Consensus 415 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~ 481 (677)
++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++.+.+. .|+ ...|..+..+|
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHH
Confidence 9999999999998853 445788999999999999999999999999875 343 67888999999
Q ss_pred hhcCChHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAM 497 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m 497 (677)
.+.|+.++|.+++++.
T Consensus 297 ~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHH
Confidence 9999999999999865
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-14 Score=141.59 Aligned_cols=272 Identities=10% Similarity=0.009 Sum_probs=212.4
Q ss_pred CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHh
Q 037537 230 DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMIS 306 (677)
Q Consensus 230 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~ 306 (677)
+...+......+...|++++|..++..+++.. +.+...+..+...|.+.|+ +++|...|+++. ..+...|..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34456677778889999999999999999875 4577788889999999999 999999999875 346678888899
Q ss_pred hhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH-HHhhccChhHHHHHHHHHHHhhcccCccchhHHH-HH-HHHccC
Q 037537 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI-SACSNLSPSLGKQIHALTIKIEIRSNRISVNNAL-VA-MYSKCG 383 (677)
Q Consensus 307 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l-i~-~y~k~g 383 (677)
.|... |++++|++.|+++... .|+.......+ ..+ ++ ......+ .. .+...|
T Consensus 98 ~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNE-HNANAALASLRAWLLS--QPQYEQLGSVNLQAD---------------------VD-IDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH---------------------HH-HHHHHHHHHhHHHHHcc
Confidence 99999 9999999999999875 34332221111 000 00 0011122 22 366788
Q ss_pred CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 384 NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 384 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
++++|...|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988753 366789999999999999999999999999864 44578899999999999999999999999
Q ss_pred hHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC------------CchhHHHHHH
Q 037537 461 MKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS------------NAVPYVMLAN 528 (677)
Q Consensus 461 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~------------~~~~~~~l~~ 528 (677)
+.+. .+.+...+..+...|.+.|++++|.+.++++ +++.|. ++..|..+..
T Consensus 232 a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 232 ALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA---------------IYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH---------------HHhCCccccccccchhhcCHHHHHHHHH
Confidence 9875 2335778999999999999999999999876 344455 5788999999
Q ss_pred HHHhcCChHHHHHHHHHH
Q 037537 529 IYAASGKWEEVATIRRLM 546 (677)
Q Consensus 529 ~y~~~g~~~~a~~~~~~m 546 (677)
+|...|++++|..++++.
T Consensus 295 ~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHTTCC
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 999999999999988643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-13 Score=132.26 Aligned_cols=274 Identities=13% Similarity=0.078 Sum_probs=210.2
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCCC--eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChH
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIKD--EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLV 248 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 248 (677)
+-....|++..|...++.. ...|+ ....-.+.++|...|++++|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 3345679999999999886 22232 234566789999999999999877542 3467788888888999999999
Q ss_pred HHHHHHHHHHHhCCCC-chhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhh
Q 037537 249 GGLQFHAHLIKSGFHQ-NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNR 327 (677)
Q Consensus 249 ~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~ 327 (677)
.|.+.++.++..+..| +..++..+...|...|+ +++|.+.|++ ..+...+..+...|.+. |++++|.+.|+++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~-~~~Al~~l~~--~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN-PDAALRTLHQ--GDSLECMAMTVQILLKL-DRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC-HHHHHHHHTT--CCSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC-HHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh
Confidence 9999999999887544 55667777789999999 9999999999 56778899999999999 999999999999988
Q ss_pred cCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHH
Q 037537 328 VGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLN 404 (677)
Q Consensus 328 ~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~ 404 (677)
. .|+.. . .....+++..+...|++++|..+|+++.+ .++..|+
T Consensus 159 ~--~p~~~-~-------------------------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 159 Q--DEDAT-L-------------------------------TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp H--CTTCH-H-------------------------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred h--CcCcH-H-------------------------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 6 36642 1 11223444555567889999999988754 4667888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE-GQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
.+..++.+.|++++|.+.|++.++.. +-+..++..++..+...|+.++ +.++++.+.+. .|+... +.+...+
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~~---~~d~~~~ 277 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHPF---IKEYRAK 277 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHH---HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCChH---HHHHHHH
Confidence 89999999999999999999988853 3457788888888888888865 57888888764 565332 3455666
Q ss_pred cCChHHHHHHH
Q 037537 484 AGKLTDAERLI 494 (677)
Q Consensus 484 ~g~~~~A~~~~ 494 (677)
.+.+++|..-|
T Consensus 278 ~~~fd~~~~~~ 288 (291)
T 3mkr_A 278 ENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 67777666544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=139.01 Aligned_cols=267 Identities=14% Similarity=0.092 Sum_probs=141.8
Q ss_pred CChhHHHHHHhhc-CCCCC-eeeHHHHHHH---HHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHc----cCCCh
Q 037537 178 GFLDEAKRVFYEM-GEIKD-EVSWNSMVVA---YGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFT----SLEDL 247 (677)
Q Consensus 178 g~~~~A~~~f~~m-~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~----~~~~~ 247 (677)
+++++|...|++. ...|+ ...+..+... +...++.++|++.|++..+. .| +..++..+...+. ..++.
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHH
Confidence 3456666666655 22232 2233333322 23445566666666665553 23 2333333333322 23455
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhccc-------------
Q 037537 248 VGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQK------------- 311 (677)
Q Consensus 248 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~------------- 311 (677)
+.|.+.+....+.. +.+..++..+...|.+.|+ .++|...|++..+ | +..+|..+...|...
T Consensus 230 ~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 230 GEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 66666666665554 3445556666666666666 6666666665542 2 233344433333211
Q ss_pred -----CCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 312 -----EEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 312 -----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.+..++|+..|++..+ ..|+....+..+...|.+.|+++
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~------------------------------------~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADE------------------------------------ANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH------------------------------------HCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHHHHhh------------------------------------cCCchhhhhhhHHHHHHHhccHH
Confidence 0112233333333322 22333677888999999999999
Q ss_pred HHHHHHhcCCC--CCcc----hHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 387 DARRLFDRMPE--HNTV----SLNSMIA-GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 387 ~A~~~~~~~~~--~~~~----~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
+|...|++..+ ++.. .+..+.. .+.+.|+.++|+..|++.++ +.|+...... ..+.+.++++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~ 420 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHH
Confidence 99999987643 2222 1222222 23467899999999999998 5676543322 2334455566
Q ss_pred HhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 460 MMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 460 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+. -+.+...|..+..+|...|++++|.+.|++.
T Consensus 421 ~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 421 MRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHH--CC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55543 2346789999999999999999999999987
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-13 Score=125.07 Aligned_cols=193 Identities=17% Similarity=0.059 Sum_probs=142.9
Q ss_pred ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 297 DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 297 ~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
+...|..+...+.+. |++++|+..|++..+. .|+. +..+..+.
T Consensus 4 ~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~----------------------------------~~a~~~lg 46 (217)
T 2pl2_A 4 AEQNPLRLGVQLYAL-GRYDAALTLFERALKE--NPQD----------------------------------PEALYWLA 46 (217)
T ss_dssp CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT--SSSC----------------------------------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHH
Confidence 445566666666666 7777777777776652 3432 55566677
Q ss_pred HHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHc-----------CChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQH-----------GIGMEALRLFEWMLETNIPPT-NITFVSV 441 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 441 (677)
..|.+.|++++|...|++..+ | +...|..+...|... |++++|+..|++.++. .|+ ...+..+
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~l 124 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQR 124 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 777777777777777776543 2 455677777778877 9999999999999985 454 6788888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV 521 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~ 521 (677)
...+...|++++|...|+...+. . .+...+..+..+|...|++++|...+++. ++++|+++.
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~P~~~~ 186 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKA---------------LEQAPKDLD 186 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCChH
Confidence 88999999999999999999987 5 77888999999999999999999999876 578899999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
.+..+..+|...|++++|...+++.
T Consensus 187 ~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 187 LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999888764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-12 Score=122.24 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI 341 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (677)
++..+...|...|+ +++|...|++..+ ++ ..+|..+...|... |++++|+..|++..+. .|+.
T Consensus 39 ~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~--~~~~------- 107 (272)
T 3u4t_A 39 IYNRRAVCYYELAK-YDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAVDR--DTTR------- 107 (272)
T ss_dssp THHHHHHHHHHTTC-HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--STTC-------
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhc--Cccc-------
Confidence 34444444444444 5555554444322 11 12366666677777 8888888888887763 2332
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHH
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGME 418 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 418 (677)
..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++
T Consensus 108 ---------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 108 ---------------------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp ---------------------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999998876 345567777734445569999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCccC------hHHHHHHHHHHhhcCChHH
Q 037537 419 ALRLFEWMLETNIPPTNITFVSVLSACAHTGK---VAEGQKYFSMMKDMFGFEPE------GEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 419 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~ 489 (677)
|++.|+++.+.. +.+...+..+...+...|+ .++|...++.+.+...-.|+ ...|..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999853 3346777778888888887 88899999888876433354 2578889999999999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
|.+.+++. ++++|+++.++..+.......+
T Consensus 240 A~~~~~~a---------------l~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNI---------------LALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHH---------------HHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHH---------------HhcCccHHHHHHHhhhhhcccc
Confidence 99999877 5788888888777766655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=119.21 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=176.7
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcC--CCCCcchHHHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVG--YHPDDCSFVCVI 341 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g--~~p~~~t~~~ll 341 (677)
...+..+...|...|+ +++|...|++..+ .+...|..+...|... |++++|+..|.+..+.. ..|+....
T Consensus 5 a~~~~~~g~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~---- 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQ-FDEAIEHYNKAWELHKDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYKVI---- 78 (258)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHH----
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchHHH----
Confidence 3456667777777777 7777777766431 5566777777777777 77777777777766531 11111100
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHH
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 421 (677)
..++..+...|.+.|++++|...|++..+.+.. ...+...|++++|+.
T Consensus 79 ---------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 79 ---------------------------SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHH
Confidence 456788899999999999999999987652221 345777889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (677)
.++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---- 199 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA---- 199 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH----
Confidence 999999853 333567888888999999999999999999875 2335788999999999999999999999876
Q ss_pred ChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 502 GSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+++.|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 200 -----------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 -----------IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -----------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-11 Score=126.15 Aligned_cols=368 Identities=12% Similarity=0.092 Sum_probs=184.7
Q ss_pred HHHHHHccCChHHHHHHHhhccc-cChhHHHHHHHHHHhcCCh---hHHHHHhccCCCCCcchHHHHHHHHHhCC-----
Q 037537 40 FILLYSKCGCLSAAHHAFNQTQH-ANVFSFNVLLAAYARQLRI---ASARQLFDQIPQPDLVSYNTLISAYADCG----- 110 (677)
Q Consensus 40 ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g----- 110 (677)
+...+.+.|++++|.+.|.+..+ .++..+..|...|...|++ ++|...|+...+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 44555667777777777777665 4455555566666666766 77887777776666667777766555555
Q ss_pred ChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-----hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----h
Q 037537 111 DTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-----LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL----D 181 (677)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~ 181 (677)
++++|+..|++..+.|.. + .+..+-..+...+. .+.+.+......| ++.....|...|...+.+ +
T Consensus 89 ~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 667888888887775522 1 22222221111111 1112222222222 233334444445444432 2
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHR---EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 182 ~A~~~f~~m~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
++..++... ...+...+..|...|.+.| +.++|++.|++..+.|
T Consensus 163 ~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------------------------------- 209 (452)
T 3e4b_A 163 DVERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------------------------------- 209 (452)
T ss_dssp HHHHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------------------------------
Confidence 233333333 2223335555555555555 4555555555554443
Q ss_pred HhCCCCchhhHHHHHHHHHHc----CCCHHHHHHHHhhCCCCChhhHHHHHhh-h--cccCCCHHHHHHHHHHHhhcCCC
Q 037537 259 KSGFHQNSHIGSGLIDLYAKC----SGDMRDCMKVFEEIPQPDLVLWNTMISG-Y--SQKEEYSDQALGCFKKLNRVGYH 331 (677)
Q Consensus 259 ~~g~~~~~~~~~~li~~y~~~----g~~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~~~~~~~A~~l~~~m~~~g~~ 331 (677)
+++...+..|..+|..- ++ .++|.+.|++....+...+..+-.. | ... +++++|+..|++..+.|
T Consensus 210 ----~~~a~~~~~Lg~~y~~g~~~~~d-~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~-~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 210 ----TVTAQRVDSVARVLGDATLGTPD-EKTAQALLEKIAPGYPASWVSLAQLLYDFPEL-GDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp ----CSCHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGG-CCHHHHHHHHHHHHHTT--
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHCC--
Confidence 22222223333444321 23 6666666665542233444444444 2 234 78888888888877655
Q ss_pred CCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC-----CHHHHHHHHhcCCCCCcchHHHH
Q 037537 332 PDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG-----NLEDARRLFDRMPEHNTVSLNSM 406 (677)
Q Consensus 332 p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g-----~~~~A~~~~~~~~~~~~~~~~~l 406 (677)
+ +.....|..+|. .| ++++|...|++....++..+..|
T Consensus 282 -~-----------------------------------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~L 324 (452)
T 3e4b_A 282 -Q-----------------------------------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYL 324 (452)
T ss_dssp -C-----------------------------------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHH
T ss_pred -C-----------------------------------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 1 344456666666 44 88999999988773355667777
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCccChHHHHHHH
Q 037537 407 IAGYAQ----HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMI 478 (677)
Q Consensus 407 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 478 (677)
...|.. ..+.++|...|++..+.| .|+ ....+-..|.. ..+.++|...|+...+. |. ++.......+
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-g~-~~a~~~l~~l 399 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG-QNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-DT-PEANDLATQL 399 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT-CC-HHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC-CC-HHHHHHHHHH
Confidence 766665 348899999999998877 333 33444444443 45888999998888775 53 2222222222
Q ss_pred HHHhhcCChHHHHHHHHh
Q 037537 479 DLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~ 496 (677)
......+++++|.++.++
T Consensus 400 ~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 323334456666666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-11 Score=115.56 Aligned_cols=199 Identities=15% Similarity=0.098 Sum_probs=160.5
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
...|..+...+... |++++|++.|+++.+. .|+. ..++..+..
T Consensus 37 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~--~~~~----------------------------------~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQR-GNTEQAKVPLRKALEI--DPSS----------------------------------ADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHT-TCTGGGHHHHHHHHHH--CTTC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhc--CCCh----------------------------------HHHHHHHHH
Confidence 45677777777777 8888899988888764 2332 455677788
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 88889999999988887653 3566788888999999999999999999987444554 5677888888899999999
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
|..+++.+.+. . +.+...+..+...|.+.|++++|.+.++++ ++..|.+...+..++.+|...
T Consensus 160 A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 222 (252)
T 2ho1_A 160 AKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLF---------------AQGGGQNARSLLLGIRLAKVF 222 (252)
T ss_dssp HHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcCcHHHHHHHHHHHHHc
Confidence 99999998875 2 235778888999999999999999999876 456677888899999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 037537 534 GKWEEVATIRRLMRDRG 550 (677)
Q Consensus 534 g~~~~a~~~~~~m~~~g 550 (677)
|++++|.+.++++.+..
T Consensus 223 g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 223 EDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHC
Confidence 99999999999987753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=122.86 Aligned_cols=344 Identities=11% Similarity=0.086 Sum_probs=227.8
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL- 180 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~- 180 (677)
+...+.+.|++++|+++|++..+.|. |+ .+..|-.+|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~-----------------------------------A~~~Lg~~y~~~g~~~ 52 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE-----------------------------------AQVGLADIQVGTRDPA 52 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT-----------------------------------GGGTCC----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH-----------------------------------HHHHHHHHHHccCCCC
Confidence 55667788999999999998877652 22 122333455566777
Q ss_pred --hHHHHHHhhcCCCCCeeeHHHHHHHHHhCC-----CchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCCh---HHH
Q 037537 181 --DEAKRVFYEMGEIKDEVSWNSMVVAYGQHR-----EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDL---VGG 250 (677)
Q Consensus 181 --~~A~~~f~~m~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a 250 (677)
++|.+.|++. ...+...+..|...+...+ ++++|+..|++..+.|... .+..+...+...+.. ..+
T Consensus 53 d~~~A~~~~~~A-~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 53 QIKQAEATYRAA-ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCH
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHH
Confidence 8999999998 4447778888888666665 7789999999999876433 455555555444433 345
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCC---CHHHHHHHHhhCCCCChhhHHHHHhhhcccCC---CHHHHHHHHHH
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG---DMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE---YSDQALGCFKK 324 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~---~~~~A~~l~~~ 324 (677)
.+.+....+.| +......|...|...+. ..+.+..+++.....+...+..+...|... | +.++|++.|++
T Consensus 129 ~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 129 QQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKK-QQPEQQAELLKQMEA 204 (452)
T ss_dssp HHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHH
Confidence 55555555555 35566677777777662 266677778777777777888888888887 8 89999999999
Q ss_pred HhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc----CCHHHHHHHHhcCCCCCc
Q 037537 325 LNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC----GNLEDARRLFDRMPEHNT 400 (677)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~~~~~~~~~~ 400 (677)
..+.|... ...+..|..+|... ++.++|...|++....++
T Consensus 205 aa~~g~~~------------------------------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~ 248 (452)
T 3e4b_A 205 GVSRGTVT------------------------------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP 248 (452)
T ss_dssp HHHTTCSC------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGST
T ss_pred HHHCCCHH------------------------------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCH
Confidence 88876222 22224455555444 688999999988773356
Q ss_pred chHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCccChH
Q 037537 401 VSLNSMIAG-Y--AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-----KVAEGQKYFSMMKDMFGFEPEGE 472 (677)
Q Consensus 401 ~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~ 472 (677)
..+..|... | ...++.++|++.|++..+.| +...+..+-..|. .| ++++|...|+... .-+..
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~ 319 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVA 319 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHH
Confidence 677777776 4 46889999999999999877 5566666666665 55 9999999998876 23566
Q ss_pred HHHHHHHHHhh----cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChHHHHHHHH
Q 037537 473 HYSCMIDLLGR----AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA----SGKWEEVATIRR 544 (677)
Q Consensus 473 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~ 544 (677)
.+..|..+|.. ..++++|.++|++... +.++.+...|..+|.. ..+.++|...++
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----------------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----------------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----------------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 67777777765 4489999999987632 2456778889999875 458999999999
Q ss_pred HHHhCCC
Q 037537 545 LMRDRGV 551 (677)
Q Consensus 545 ~m~~~g~ 551 (677)
+..+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 9888774
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-11 Score=116.66 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=131.1
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCC--CCc----hhhHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGF--HQN----SHIGSG 271 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~ 271 (677)
.|..+...+...|++++|+..|++..+.. .+..++..+..++...|+++.|...+..+++... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34555566666666666666666665554 5555566666666666666666666665554321 111 345555
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccCh
Q 037537 272 LIDLYAKCSGDMRDCMKVFEEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP 349 (677)
Q Consensus 272 li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 349 (677)
+...|.+.|+ +++|...|++... |+. ..+... |++++|+..++++... .|+
T Consensus 85 l~~~~~~~~~-~~~A~~~~~~a~~~~~~~-------~~~~~~-~~~~~a~~~~~~~~~~--~~~---------------- 137 (258)
T 3uq3_A 85 IGNAYHKLGD-LKKTIEYYQKSLTEHRTA-------DILTKL-RNAEKELKKAEAEAYV--NPE---------------- 137 (258)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCCCH-------HHHHHH-HHHHHHHHHHHHHHHC--CHH----------------
T ss_pred HHHHHHHccc-HHHHHHHHHHHHhcCchh-------HHHHHH-hHHHHHHHHHHHHHHc--Ccc----------------
Confidence 5555555555 5555555555432 221 123333 5556666666655542 121
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
...++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 138 ------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 138 ------------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 144556667777777777777777776543 34556777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 427 LETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.+.. +.+..++..+...+...|++++|...++...+.
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7643 334666777777777777777777777776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-11 Score=118.48 Aligned_cols=215 Identities=10% Similarity=-0.085 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHh
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISAC 344 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 344 (677)
++..+...|...|+ +++|...|++.. ..+...|..+...|... |++++|+..|++..+. .|+.
T Consensus 45 ~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~--~~~~---------- 110 (275)
T 1xnf_A 45 LLYERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLEL--DPTY---------- 110 (275)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC----------
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhc--Cccc----------
Confidence 34444444444444 555555554432 23345566666666666 6677777777666653 2221
Q ss_pred hccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHH
Q 037537 345 SNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRL 422 (677)
Q Consensus 345 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l 422 (677)
..++..+...|.+.|++++|...|+++.+ |+...+...+..+...|++++|+..
T Consensus 111 ------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 111 ------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp ------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 44556666677777777777777776643 3333334444455667899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 423 FEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 423 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++..... +++...+ .++..+...++.++|...++...+. .|+ ...+..+...|.+.|++++|.+.+++.
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98887753 4444444 3666777788888999888877643 342 577888999999999999999999877
Q ss_pred CCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 498 PFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 498 ~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
++++|++.. ....++...|++++|++.+
T Consensus 242 ---------------l~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 ---------------VANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---------------HTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred ---------------HhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 455665544 3466788889999887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=117.23 Aligned_cols=200 Identities=16% Similarity=0.102 Sum_probs=145.5
Q ss_pred CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHH
Q 037537 296 PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNAL 375 (677)
Q Consensus 296 ~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 375 (677)
.....|..+...+... |++++|+.+|+++.+. .|+. ..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~--~~~~----------------------------------~~~~~~l 63 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEF-GDYEKAAEAFTKAIEE--NKED----------------------------------AIPYINF 63 (243)
T ss_dssp ----------------------CCTTHHHHHTT--CTTC----------------------------------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHH
Confidence 3445666677777777 8888888888888763 3332 4455677
Q ss_pred HHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVA 452 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 452 (677)
...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 7888888999999888887653 356778888889999999999999999998854 456778888888899999999
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
+|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ++..|+++.+|..++.+|..
T Consensus 143 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 143 LALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAV---------------TEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHH
Confidence 999999998865 2335778888899999999999999998876 45677888899999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 037537 533 SGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~~g 550 (677)
.|++++|.+.++++.+..
T Consensus 206 ~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHccC
Confidence 999999999999887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-11 Score=110.58 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=146.2
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
...|..+...+... |++++|++.|+++.+. .|+. ..++..+..
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~----------------------------------~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRG-QDYRQATASIEDALKS--DPKN----------------------------------ELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHh--Cccc----------------------------------hHHHHHHHH
Confidence 44566666677777 7777777777777653 2321 345566677
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQH-GIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVA 452 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 452 (677)
.|...|++++|.+.|++..+ .+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 77777888888877776543 3556777788888888 888888888888887333344 567777788888888888
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC-CCchhHHHHHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP-SNAVPYVMLANIYA 531 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p-~~~~~~~~l~~~y~ 531 (677)
+|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ++..| .++..+..+...+.
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 193 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKY---------------QSRVEVLQADDLLLGWKIAK 193 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCCHHHHHHHHHHHH
Confidence 888888888765 1224677888888888889999988888876 35567 77788888888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037537 532 ASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~~ 549 (677)
..|+.++|..+++.+.+.
T Consensus 194 ~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 194 ALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHh
Confidence 889998888888887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-11 Score=113.37 Aligned_cols=192 Identities=15% Similarity=0.034 Sum_probs=145.9
Q ss_pred CCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHH
Q 037537 263 HQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVC 339 (677)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (677)
+++...+..+...+.+.|+ +++|...|++..+ .+...|..+...+.+. |++++|+..|++..+. .|+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~--~P~~----- 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR-YDAALTLFERALKENPQDPEALYWLARTQLKL-GLVNPALENGKTLVAR--TPRY----- 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC-----
T ss_pred CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCc-----
Confidence 4566677777888888888 8888888887643 4567788888888888 9999999999998874 4543
Q ss_pred HHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc-----------CCHHHHHHHHhcCCC--C-CcchHHH
Q 037537 340 VISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC-----------GNLEDARRLFDRMPE--H-NTVSLNS 405 (677)
Q Consensus 340 ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~~--~-~~~~~~~ 405 (677)
...+..+...|.+. |++++|...|++..+ | +...|..
T Consensus 73 -----------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 123 (217)
T 2pl2_A 73 -----------------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123 (217)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44555666666666 999999999998764 3 5678999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA 484 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 484 (677)
+...|...|++++|+..|++.++.. .+...+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999977 77889999999999999999999999999875 45 577888999999999
Q ss_pred CChHHHHHHHHhC
Q 037537 485 GKLTDAERLIEAM 497 (677)
Q Consensus 485 g~~~~A~~~~~~m 497 (677)
|++++|.+.+++.
T Consensus 199 g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 199 GKAEEAARAAALE 211 (217)
T ss_dssp -------------
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=8.5e-11 Score=107.41 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=143.8
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
+.+|..+...|.+.|++++|.+.|++..+ .++.+|..+...|.+.|++++|+..+....... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 67899999999999999999999998764 466789999999999999999999999998853 44466777778888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
...++++.+...+....+. .+.+...+..+..+|.+.|++++|.+.|++. ++++|.++.+|..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKT---------------ISIKPGFIRAYQS 146 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHH---------------HHhcchhhhHHHH
Confidence 9999999999999999875 2335778889999999999999999999876 5788999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037537 526 LANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++.+|.+.|++++|.+.+++..+.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999999999999999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=116.27 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=145.5
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
...+..+...+...|+ +++|...|+++.+ .+...|..+...+... |++++|++.|++..+. .|+.
T Consensus 23 ~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~--~~~~-------- 90 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGD-YEKAAEAFTKAIEENKEDAIPYINFANLLSSV-NELERALAFYDKALEL--DSSA-------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC--------
T ss_pred HHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc--CCcc--------
Confidence 3445555566666666 7777777766532 3456677777777777 8888888888887764 2321
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHH
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 419 (677)
..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|
T Consensus 91 --------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 91 --------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred --------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 45566777788888888888888887643 4566788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
+..++++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-- 219 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA-- 219 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH--
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence 99999998753 445778888888999999999999999998875 2335778888999999999999999999876
Q ss_pred CCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 500 NPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 500 ~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
++++|+++..+..+......
T Consensus 220 -------------~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 220 -------------IDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp -------------HHHCTTCHHHHHHHTC----
T ss_pred -------------HccCcchHHHHHHHHHHHhh
Confidence 46777777777666554433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=125.54 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCC-----CC----hhhHHHHHhhhcccCCC--------------------HHHH
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----PD----LVLWNTMISGYSQKEEY--------------------SDQA 318 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~~~~--------------------~~~A 318 (677)
++..+...|...|+ +++|...|++..+ ++ ..++..+...|... |+ +++|
T Consensus 89 ~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 89 ASGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHH
Confidence 44455555555565 6666665554431 11 23566666667666 77 7777
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-
Q 037537 319 LGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE- 397 (677)
Q Consensus 319 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~- 397 (677)
+..+.+....- .+.+..+....++..+...|...|++++|...|++..+
T Consensus 167 ~~~~~~al~~~------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 167 VDFYEENLSLV------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHH------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77776654310 00000111145678888999999999999999887653
Q ss_pred ----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 398 ----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 398 ----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
++ ..+|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..+++...+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 12 23788899999999999999999999875310 111 457788888999999999999999988764
Q ss_pred cCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChH
Q 037537 465 FGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWE 537 (677)
Q Consensus 465 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~ 537 (677)
..-.++ ...+..+...|.+.|++++|.+.+++... ..+. ....|....++..+..+|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE--------ISRE-VGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HHHH-TTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHH-hcCCcchhHHHHHHHHHHHHhhHhH
Confidence 211122 55788889999999999999999987521 0000 0111223456778888888887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-10 Score=108.66 Aligned_cols=199 Identities=9% Similarity=0.029 Sum_probs=110.4
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 037537 196 EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDL 275 (677)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 275 (677)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++.|.+.+..+.+.. +.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~---------- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRN---------- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCc----------
Confidence 4557777777777888888888877776642 1234455555555555555555555555555442 122
Q ss_pred HHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHH
Q 037537 276 YAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQI 355 (677)
Q Consensus 276 y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i 355 (677)
...|..+...|... |++++|+++|+++...+..|+.
T Consensus 105 ----------------------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~--------------------- 140 (252)
T 2ho1_A 105 ----------------------ARVLNNYGGFLYEQ-KRYEEAYQRLLEASQDTLYPER--------------------- 140 (252)
T ss_dssp ----------------------HHHHHHHHHHHHHT-TCHHHHHHHHHHHTTCTTCTTH---------------------
T ss_pred ----------------------HHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCccCccc---------------------
Confidence 33344444444444 5555555555555442122221
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037537 356 HALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 432 (677)
..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|...|+++.+.. +
T Consensus 141 -------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 206 (252)
T 2ho1_A 141 -------------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-G 206 (252)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-C
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 33344455555555555555555554432 234455566666666666666666666666532 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.+...+..+...+...|+.++|.++++.+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-10 Score=109.19 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhHHHHHHHHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD--MYTLASILTAF 241 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~ 241 (677)
........+...|++++|...|++. ...| +...|..+...|...|++++|++.|++..+.+..|+ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3345567788999999999999987 3333 455899999999999999999999999988442222 23477888888
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHH
Q 037537 242 TSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQA 318 (677)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A 318 (677)
...|+++.|...+..+.+.. +.+..++..+...|.+.|+ +++|...|++..+ .+...|..+...+... +++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999998875 4566788888999999888 9999999988764 3445666666233334 688889
Q ss_pred HHHHHHHhhc
Q 037537 319 LGCFKKLNRV 328 (677)
Q Consensus 319 ~~l~~~m~~~ 328 (677)
++.|++..+.
T Consensus 162 ~~~~~~a~~~ 171 (272)
T 3u4t_A 162 DSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=119.76 Aligned_cols=111 Identities=16% Similarity=-0.014 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHH
Q 037537 13 RDLVTGKSLHALYLKNLV---PFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQ 86 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 86 (677)
|+++.|...++.+++... +.+..++..+...+...|++++|...|+.+.. .+..++..+...|...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555554421 11233444444455555555555555544443 223344444444444444444444
Q ss_pred HhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhH
Q 037537 87 LFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMR 123 (677)
Q Consensus 87 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (677)
.|+...+ .+..+|..+...|.+.|++++|...|+++.
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4443332 123344444444444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-09 Score=107.12 Aligned_cols=220 Identities=12% Similarity=0.005 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhCCCC-ChhhHHHHHhhhcc----cCCCHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 037537 267 HIGSGLIDLYAKCSGDMRDCMKVFEEIPQP-DLVLWNTMISGYSQ----KEEYSDQALGCFKKLNRVGYHPDDCSFVCVI 341 (677)
Q Consensus 267 ~~~~~li~~y~~~g~~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (677)
..+..+...|...|+ .++|...|++..++ +..++..+...|.. . +++++|+..|++..+.+ +
T Consensus 7 ~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~-------- 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKD-FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLN---Y-------- 73 (273)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---C--------
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCC---C--------
Confidence 344445555555555 66666666554432 33455555555555 6 77788888887776643 1
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHH----
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGNLEDARRLFDRMPE-HNTVSLNSMIAGYAQ---- 412 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 412 (677)
+..+..+..+|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 74 ---------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 74 ---------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ---------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ---------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 4455667777777 8888888888887654 466678888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----c
Q 037537 413 HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----A 484 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~ 484 (677)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..+|.+ .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCC
Confidence 899999999999999865 55666777777776 89999999999998875 3 45677888888888 9
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037537 485 GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA----SGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g 550 (677)
+++++|.+.+++.. +..| +..+..|..+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~---------------~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKAC---------------ELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHH---------------HTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH---------------hCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999998762 3333 5678899999999 999999999999988876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-10 Score=104.21 Aligned_cols=206 Identities=9% Similarity=-0.080 Sum_probs=159.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 037537 95 DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCY 174 (677)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~ 174 (677)
+...|..+...+...|++++|++.|++..+.. | .+..++..+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~--------------------------------~~~~~~~~l~~~~ 52 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P--------------------------------KNELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------------------------TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c--------------------------------cchHHHHHHHHHH
Confidence 45567888888999999999999999887642 2 2334556777888
Q ss_pred HhcCChhHHHHHHhhc-C-CCCCeeeHHHHHHHHHhC-CCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHH
Q 037537 175 SRNGFLDEAKRVFYEM-G-EIKDEVSWNSMVVAYGQH-REGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 175 ~~~g~~~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 250 (677)
...|++++|.+.|++. . ...+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+...+...|+++.|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999887 1 233566788888999999 999999999999887433443 56777788888899999999
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
...+..+.+.. +.+...+..+...|.+.|+ .++|...|++.. . .+...|..+...+... |+.++|..+++.+.
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-GNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 99999988875 4457788888899999999 999999998764 2 4566777777777777 99999999998887
Q ss_pred hcCCCCCcchHHH
Q 037537 327 RVGYHPDDCSFVC 339 (677)
Q Consensus 327 ~~g~~p~~~t~~~ 339 (677)
.. .|+......
T Consensus 210 ~~--~p~~~~~~~ 220 (225)
T 2vq2_A 210 AN--FPYSEELQT 220 (225)
T ss_dssp HH--CTTCHHHHH
T ss_pred Hh--CCCCHHHHH
Confidence 64 466555433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=121.99 Aligned_cols=279 Identities=11% Similarity=0.020 Sum_probs=184.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-H----hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-M----YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
+..+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|+++.|...+..+++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 115 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL------------- 115 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------
Confidence 4445566677777777777777776642 22 1 23444445555555555555554444322
Q ss_pred HHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccChh
Q 037537 274 DLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSPS 350 (677)
Q Consensus 274 ~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~ 350 (677)
++... ......|..+...|... |++++|+..|++....... .+.
T Consensus 116 ----------------~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~---------------- 162 (411)
T 4a1s_A 116 ----------------AKSMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQLGDR---------------- 162 (411)
T ss_dssp ----------------HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------------
T ss_pred ----------------HHHccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhch----------------
Confidence 11111 01234566666777777 8888888888876542100 010
Q ss_pred HHHHHHHHHHHhhcccCccchhHHHHHHHHccCC-----------------HHHHHHHHhcCCC-----C----CcchHH
Q 037537 351 LGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN-----------------LEDARRLFDRMPE-----H----NTVSLN 404 (677)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~ 404 (677)
+....++..+...|...|+ +++|.+.|++..+ . ...+|.
T Consensus 163 ---------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 227 (411)
T 4a1s_A 163 ---------------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACG 227 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0114566778888888888 8888888776532 1 234788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHH
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYS 475 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~ 475 (677)
.+...|...|++++|+..|++..+..- .++ ..++..+...+...|++++|...++...+...-.. ....+.
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999999999999999999876321 112 23778888899999999999999998876421111 156788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..+|.+.|++++|.+.+++... ..... ...+....+|..+..+|...|++++|.+.+++..+.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~--------~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLA--------IAQEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------HHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------HHHHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889999999999999999987621 00000 001122457889999999999999999999988664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=125.23 Aligned_cols=207 Identities=13% Similarity=0.086 Sum_probs=173.2
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCH-HHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHH
Q 037537 283 MRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYS-DQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHAL 358 (677)
Q Consensus 283 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~ 358 (677)
++++...+++.. ..+...|..+...|... |++ ++|++.|++..+. .|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al~~--~p~~------------------------ 136 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKL--EPEL------------------------ 136 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHHHH--CTTC------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhh--CCCC------------------------
Confidence 555555665443 34667788888888888 999 9999999988764 3432
Q ss_pred HHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHc---------CChHHHHHHHHHHH
Q 037537 359 TIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQH---------GIGMEALRLFEWML 427 (677)
Q Consensus 359 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~ 427 (677)
..++..+...|.+.|++++|.+.|++..+ |+...|..+...|... |++++|++.|++.+
T Consensus 137 ----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 137 ----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp ----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 56778889999999999999999998764 6667888899999999 99999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 428 ETNIPPTNITFVSVLSACAHT--------GKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 428 ~~g~~p~~~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
+.. +.+...+..+..++... |++++|...|+...+. .| +...|..+..+|.+.|++++|.+.|+
T Consensus 207 ~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 207 QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 853 44478888898999888 9999999999999875 45 67889999999999999999999998
Q ss_pred hCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 496 AMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 496 ~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
+. ++++|+++.++..+..++...|++++|.+.+.+
T Consensus 283 ~a---------------l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 283 QA---------------AALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HH---------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 76 578899999999999999999999999875543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-10 Score=116.99 Aligned_cols=244 Identities=10% Similarity=0.080 Sum_probs=164.4
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCC-hHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLED-LVGGLQFHAHLIKSGFHQNSHIGSGLIDL 275 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 275 (677)
.|+.+...+.+.|++++|++.|++.++. .|+ ...|..+..++...|+ +++|...+..+++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 4666777777777777777777777663 233 3445555555555553 555555555555442
Q ss_pred HHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHH
Q 037537 276 YAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQI 355 (677)
Q Consensus 276 y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i 355 (677)
..+...|+.+...+... |++++|+..|+++++. .|+.
T Consensus 163 -------------------P~~~~a~~~~g~~~~~~-g~~~eAl~~~~kal~l--dP~~--------------------- 199 (382)
T 2h6f_A 163 -------------------PKNYQVWHHRRVLVEWL-RDPSQELEFIADILNQ--DAKN--------------------- 199 (382)
T ss_dssp -------------------TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHH--CTTC---------------------
T ss_pred -------------------CCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CccC---------------------
Confidence 23445555555566666 6677777777776653 2332
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHH-cCChHHH-----HHHHHHH
Q 037537 356 HALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQ-HGIGMEA-----LRLFEWM 426 (677)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~A-----~~l~~~m 426 (677)
..+|..+..+|.+.|++++|...|+++.+ .+...|+.+...|.. .|..++| ++.|++.
T Consensus 200 -------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A 266 (382)
T 2h6f_A 200 -------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266 (382)
T ss_dssp -------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 55666677777777777777777777654 355678888888888 6665777 5889999
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcC---------ChHHHHHHH
Q 037537 427 LETNIPPT-NITFVSVLSACAHTG--KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG---------KLTDAERLI 494 (677)
Q Consensus 427 ~~~g~~p~-~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~ 494 (677)
++. .|+ ...|..+...+...| ++++|...+..+ + .-..+...+..+.++|.+.| .+++|.+++
T Consensus 267 l~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 267 IKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 884 454 678888888888888 689999988887 3 23345778889999998874 358888888
Q ss_pred HhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 495 EAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 495 ~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
+++. .+++|.....|..++..+..
T Consensus 342 ~~l~--------------~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 342 EILA--------------KEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHH--------------HTTCGGGHHHHHHHHHHHHH
T ss_pred HHHH--------------HHhCchhHHHHHHHHHHHHH
Confidence 7651 36777777788877666543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.7e-11 Score=118.66 Aligned_cols=281 Identities=11% Similarity=0.057 Sum_probs=180.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-----MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
+......+...|++++|+..|++..+.. |+ ...+..+...+...|+++.|...+..+.+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 3444556677777777777777776642 32 2344455555555666666665555443320
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccChhHH
Q 037537 274 DLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSPSLG 352 (677)
Q Consensus 274 ~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~ 352 (677)
.+.++ . .....+|..+...|... |++++|+..|.+..+.... ++....
T Consensus 74 ---~~~~~-~-----------~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~--------------- 122 (338)
T 3ro2_A 74 ---RTIGD-Q-----------LGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGE--------------- 122 (338)
T ss_dssp ---HHHTC-H-----------HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHH---------------
T ss_pred ---hcccc-c-----------HHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHH---------------
Confidence 00000 0 01133556666677777 8888888888776542110 111111
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHccCC--------------------HHHHHHHHhcCCC-----C----CcchH
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKCGN--------------------LEDARRLFDRMPE-----H----NTVSL 403 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~~~~~~~-----~----~~~~~ 403 (677)
..++..+...|...|+ +++|...+++..+ + ....+
T Consensus 123 ----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 186 (338)
T 3ro2_A 123 ----------------ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAF 186 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3355667777777777 7888777765432 1 23468
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHY 474 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~ 474 (677)
..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...+
T Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (338)
T 3ro2_A 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 8888999999999999999999875310 112 237778888899999999999999988754211111 5577
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..+...|.+.|++++|.+.+++.... .... .-.+....++..+..+|...|++++|...+++..+.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 267 YSLGNTYTLLQDYEKAIDYHLKHLAI--------AQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH--------HHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88889999999999999999876210 0000 001112457889999999999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.2e-08 Score=105.82 Aligned_cols=428 Identities=7% Similarity=0.023 Sum_probs=217.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC---hhHHHHHh
Q 037537 15 LVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR---IASARQLF 88 (677)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~f 88 (677)
..+-...++..+..+ +.|...|..+++.+.+.+.++.++.+|+++.. .....|..-+..-.+.|+ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 444555667777666 77899999999999888999999999998888 445578888888888888 99999999
Q ss_pred ccCCC-----CCcchHHHHHHHHHhCCCh----hH----HHHHHHHhHh-cCC-CCCc-ccHHHHHHHhhc---------
Q 037537 89 DQIPQ-----PDLVSYNTLISAYADCGDT----ES----ALSLFKDMRE-KRF-DTDG-FTLSGLITASSN--------- 143 (677)
Q Consensus 89 ~~m~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~~--------- 143 (677)
++... |++..|..-+....+.++. ++ +.++|+.... .|. .|+. ..|...+.-...
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88653 6777788777766555543 23 3466766543 465 5654 334333332211
Q ss_pred chh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-------------CChhHHHHHHhhc-----CCC---CC-----
Q 037537 144 NLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRN-------------GFLDEAKRVFYEM-----GEI---KD----- 195 (677)
Q Consensus 144 ~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~-------------g~~~~A~~~f~~m-----~~~---~~----- 195 (677)
... .++.++..++......-..+|......--.. ..++.|+..+.++ +.. |.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 111 4566666665422222223332222111110 1122233333321 000 00
Q ss_pred ---------------eeeHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHH-H
Q 037537 196 ---------------EVSWNSMVVAYGQHRE-------GLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGL-Q 252 (677)
Q Consensus 196 ---------------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~ 252 (677)
...|...+.---.++. .+.+..+|++.+.. .+-+...|.....-+...|+.+.|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0113333322211110 11223344444332 1113333333333333444444443 5
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC--
Q 037537 253 FHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY-- 330 (677)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~-- 330 (677)
+++..+.. ++.+..++-..+...-+.|+ ++.|+++| +++.....
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~-~e~aR~iy--------------------------------ek~l~~l~~~ 411 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTK-IPEIETTI--------------------------------LSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTC-HHHHHHHH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCC-HHHHHHHH--------------------------------HHHHHHHHHH
Confidence 55544432 23333344444444444444 55555444 44443210
Q ss_pred -------CCC------------cchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC-CHHHHH
Q 037537 331 -------HPD------------DCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG-NLEDAR 389 (677)
Q Consensus 331 -------~p~------------~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~ 389 (677)
.|+ ...|...+....+.+ ++.++.++..+++...... ..+|-..+.+-.++| +.+.|+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHH
Confidence 021 112344444444444 5555555555554411111 223333333333443 367777
Q ss_pred HHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 390 RLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP--TNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 390 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
++|+...+ .+...|...+.-....|+.+.|..+|++.+.....+ ....|...+.--...|+.+.+..+.+++.+.
T Consensus 491 ~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 491 KVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77776554 244556666666666777777777777776643212 1345666666666777777777777777765
Q ss_pred cCCccChHHHHHHHHHHh
Q 037537 465 FGFEPEGEHYSCMIDLLG 482 (677)
Q Consensus 465 ~~~~p~~~~~~~li~~~~ 482 (677)
.|+......+++-|.
T Consensus 571 ---~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 571 ---FPEVNKLEEFTNKYK 585 (679)
T ss_dssp ---STTCCHHHHHHHHTC
T ss_pred ---CCCCcHHHHHHHHhc
Confidence 344444444455553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.5e-11 Score=121.75 Aligned_cols=279 Identities=12% Similarity=0.065 Sum_probs=182.8
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-----MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGL 272 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 272 (677)
.+......+...|++++|+..|++..+.+ |+ ...+..+...+...|+++.|...+..+++.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 76 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------ 76 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------
Confidence 34555566666777777777777666542 22 123344444444455555554444333221
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccCh
Q 037537 273 IDLYAKCSGDMRDCMKVFEEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSP 349 (677)
Q Consensus 273 i~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~ 349 (677)
...... ....+|..+...|... |++++|+..|.+..+.... ++....
T Consensus 77 -----------------~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~------------ 126 (406)
T 3sf4_A 77 -----------------ARTIGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGE------------ 126 (406)
T ss_dssp -----------------HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHH------------
T ss_pred -----------------HHhccccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccch------------
Confidence 111111 1234677777888888 9999999999887653100 111000
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC--------------------HHHHHHHHhcCCC-----C----Cc
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN--------------------LEDARRLFDRMPE-----H----NT 400 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~~~~~~~-----~----~~ 400 (677)
..++..+...|...|+ +++|...|++..+ . ..
T Consensus 127 -------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~ 187 (406)
T 3sf4_A 127 -------------------ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG 187 (406)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 4456777788888888 8888877765432 1 23
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----h
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----G 471 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 471 (677)
.+|..+...|...|++++|+..|++..+..- .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 4688889999999999999999999876310 122 237888888999999999999999988754211111 5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.++..+...|.+.|++++|.+.+++.... ... ..-.+....++..+..+|...|++++|.+.+++..+
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI--------AQE-LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHH--------HHh-cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888899999999999999999876210 000 000111256788999999999999999999998765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=120.77 Aligned_cols=274 Identities=9% Similarity=-0.017 Sum_probs=187.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-e----eeHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHhHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-E----VSWNSMVVAYGQHREGLEALQLFQEMVSL----QLGL-DMYTL 234 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~ 234 (677)
.+..+...+...|++++|...|++. ...|+ . ..|..+...|...|++++|++.|++..+. +-.| ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445667888999999999999998 22233 2 46888999999999999999999998653 1111 23445
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
..+...+...|+++.|...+..+++.. .+.++ . .....+|..+...|... |+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~-~-----------~~~~~~~~~l~~~~~~~-g~ 181 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA---------------RQLGD-R-----------LSEGRALYNLGNVYHAK-GK 181 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTC-H-----------HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHhhc-h-----------HHHHHHHHHHHHHHHHc-Cc
Confidence 555555666666666666655544321 00000 0 01123555666666666 77
Q ss_pred -----------------HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 315 -----------------SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 315 -----------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
+++|++.+.+..+.. ...+..+....++..+..
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~------------------------------~~~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLM------------------------------RDLGDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH------------------------------HHHTCHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHH------------------------------HHcCCHHHHHHHHHHHHH
Confidence 777777776654310 000000111456788889
Q ss_pred HHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIP-PT----NITFVSVLS 443 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~ 443 (677)
.|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++..+..-. .+ ..++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987754 11 237888999999999999999999988763210 11 457788888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+...|++++|..+++...+...-.+ ....+..+...|.+.|++++|.+.+++.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 89999999999999998876421111 1457788899999999999999999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-10 Score=114.92 Aligned_cols=230 Identities=10% Similarity=0.078 Sum_probs=170.7
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCC-----CC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 272 LIDLYAKCSGDMRDCMKVFEEIPQ-----PD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 272 li~~y~~~g~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
....+...|+ +++|...|++..+ ++ ..+|..+...|... |++++|+..+.+..+.--..+. +
T Consensus 109 ~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~--~----- 179 (383)
T 3ulq_A 109 RGMYELDQRE-YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEA--Y----- 179 (383)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCST--T-----
T ss_pred HHHHHHHhcC-HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcc--c-----
Confidence 4455666677 8888888877642 22 34677788888888 9999999998887653111110 0
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHc
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQH 413 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 413 (677)
.+....+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...
T Consensus 180 ----------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 180 ----------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 000045678889999999999999999887653 11 23788899999999
Q ss_pred CChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC---CccChHHHHHHHHHHhhcC
Q 037537 414 GIGMEALRLFEWMLET----NIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFG---FEPEGEHYSCMIDLLGRAG 485 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~g 485 (677)
|++++|++.|++..+. +..|+ ..++..+...+...|++++|...++...+... -......+..+...|.+.|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998872 32244 56788899999999999999999998876421 1112334567888899999
Q ss_pred C---hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 486 K---LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 486 ~---~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+ +++|..++++....| .....+..|+..|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~~~~~----------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKMLYA----------------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHH----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9 999999999884322 2345788999999999999999999998865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=115.30 Aligned_cols=272 Identities=11% Similarity=0.009 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-----eeeHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHhHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-----EVSWNSMVVAYGQHREGLEALQLFQEMVSL----QLGL-DMYTL 234 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~ 234 (677)
.+...-..+...|++++|...|++. ...|+ ...|..+...+...|++++|++.+++.... +-.| ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444557788999999999999998 22233 356888999999999999999999987652 1111 13344
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCC--ChhhHHHHHhhhcccC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQP--DLVLWNTMISGYSQKE 312 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~~ 312 (677)
..+...+...|+++.|...+...++.. .....+ ...++..+...|...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~l~~~~~~~- 136 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDIS-----------------------------RELNDKVGEARALYNLGNVYHAK- 136 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-----------------------------HHhcCchHHHHHHHHHHHHHHHc-
Confidence 455555556666666666555544321 000000 012444555555555
Q ss_pred CC--------------------HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchh
Q 037537 313 EY--------------------SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVN 372 (677)
Q Consensus 313 ~~--------------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 372 (677)
|+ +++|++.+.+..... ...+..+....++
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~------------------------------~~~~~~~~~~~~~ 186 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV------------------------------TALGDRAAQGRAF 186 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH------------------------------HHHTCHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH------------------------------HhcCCHHHHHHHH
Confidence 55 677777776654310 0000001114567
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITF 438 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~ 438 (677)
..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|...+++..+... .++ ..++
T Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (338)
T 3ro2_A 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 7888899999999999999987653 11 23788889999999999999999998875310 111 4567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 78888899999999999999988754211111 447788899999999999999999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-09 Score=99.75 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=142.2
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44567788889999999999999999876 356678889999999999999999999999863 44677888889999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ++..|.++..+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~ 149 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIA---------------LGLRPNEGKVHRA 149 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------HhcCccchHHHHH
Confidence 9999999999999999875 2346778889999999999999999999876 4667888899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037537 526 LANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++.+|...|++++|.+.+++..+.
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=105.95 Aligned_cols=223 Identities=13% Similarity=0.044 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhhcCCCC-CeeeHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037537 165 SVNNSLLTCYSRNGFLDEAKRVFYEMGEIK-DEVSWNSMVVAYGQ----HREGLEALQLFQEMVSLQLGLDMYTLASILT 239 (677)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 239 (677)
..+..+-..|...|++++|.+.|++. ..| +..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKA-CDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 34444555556666666666666655 222 33445555555555 666666666666655543 4444444444
Q ss_pred HHcc----CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCH
Q 037537 240 AFTS----LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYS 315 (677)
Q Consensus 240 a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~ 315 (677)
.+.. .+++++|...+....+.+ +...+..+...|.+. . ... +++
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-~---------------------------~~~-~~~ 130 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG-K---------------------------VVT-RDF 130 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC-S---------------------------SSC-CCH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC-C---------------------------Ccc-cCH
Confidence 4544 555555555555555443 333444444444430 0 004 566
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCCHHHHHHH
Q 037537 316 DQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGNLEDARRL 391 (677)
Q Consensus 316 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~ 391 (677)
++|+..|++..+.+ + ...+..+...|.+ .+++++|...
T Consensus 131 ~~A~~~~~~a~~~~---~-----------------------------------~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---D-----------------------------------GDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp HHHHHHHHHHHHTT---C-----------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcC---c-----------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 66666666665543 1 2223344444444 5666666666
Q ss_pred HhcCCC-CCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhH
Q 037537 392 FDRMPE-HNTVSLNSMIAGYAQ----HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMK 462 (677)
Q Consensus 392 ~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 462 (677)
|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...
T Consensus 173 ~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 173 YDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 655433 244555666666666 677777777777766643 24455555566666 667777777777766
Q ss_pred Hh
Q 037537 463 DM 464 (677)
Q Consensus 463 ~~ 464 (677)
+.
T Consensus 250 ~~ 251 (273)
T 1ouv_A 250 KL 251 (273)
T ss_dssp HH
T ss_pred Hc
Confidence 54
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-09 Score=112.19 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC-hhHHHHHhccCCC---CCcchHHHHHHHHH
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR-IASARQLFDQIPQ---PDLVSYNTLISAYA 107 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~~~ 107 (677)
..+..+..++.+.|++++|...+++++. .+..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+...+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4455555666666666666666666665 334556666666666664 6666666666543 24556666666666
Q ss_pred hCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037537 108 DCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVF 187 (677)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 187 (677)
+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|...|
T Consensus 178 ~~g~~~eAl~~~~kal~ld----------------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD----------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC----------------------------------ccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 6667777776666666532 223344455556666666666666666
Q ss_pred hhc--CCCCCeeeHHHHHHHHHh-CCCchHH-----HHHHHHHHHCCCCC-CHhHHHHHHHHHccCC--ChHHHHHHHHH
Q 037537 188 YEM--GEIKDEVSWNSMVVAYGQ-HREGLEA-----LQLFQEMVSLQLGL-DMYTLASILTAFTSLE--DLVGGLQFHAH 256 (677)
Q Consensus 188 ~~m--~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~--~~~~a~~~~~~ 256 (677)
+++ ....+...|+.+...+.+ .|..++| ++.|++.+.. .| +...|..+...+...| +.+++.+.+..
T Consensus 224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 665 333456666666666666 4544665 3666666552 34 3445555555566555 46666666655
Q ss_pred HHHhCCCCchhhHHHHHHHHHHcC--------CCHHHHHHHHhhC-CCCCh---hhHHHHHhhh
Q 037537 257 LIKSGFHQNSHIGSGLIDLYAKCS--------GDMRDCMKVFEEI-PQPDL---VLWNTMISGY 308 (677)
Q Consensus 257 ~~~~g~~~~~~~~~~li~~y~~~g--------~~~~~A~~~f~~~-~~~~~---~~~~~li~~~ 308 (677)
+ + .-+.+...+..+.+.|.+.| +..++|.++|+++ .+.|. ..|..+...+
T Consensus 302 ~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 302 L-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp H-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred h-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5 2 22334556666666776653 1146777777776 43332 3455554444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=126.71 Aligned_cols=163 Identities=17% Similarity=0.249 Sum_probs=146.3
Q ss_pred cCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 037537 366 SNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSV 441 (677)
Q Consensus 366 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 441 (677)
|+.+..++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .|+ ..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33477899999999999999999999998764 35678999999999999999999999999984 565 7899999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
..++...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++. ++++|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A---------------l~l~P~~~ 145 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTA---------------LKLKPDFP 145 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCSCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCh
Confidence 99999999999999999999865 56 4788999999999999999999999876 68899999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+|..|+.+|...|+|++|.+.+++..+
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999998887754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-08 Score=107.87 Aligned_cols=427 Identities=11% Similarity=0.077 Sum_probs=237.5
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCC---hhHHHHHHHHhHhcCC-CCCcccHH
Q 037537 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGD---TESALSLFKDMREKRF-DTDGFTLS 135 (677)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~-~p~~~t~~ 135 (677)
.|...|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.++ ++.+..+|++...... .|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5778899999999999999999999999875 4 45568888888888888 9999999999887541 25544443
Q ss_pred HHHHHh---hcc--h-h----hHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHHh---------cCChhHHHHHHhhcCCC
Q 037537 136 GLITAS---SNN--L-C----LIKQLHCLAIY-CGF-DHY-ASVNNSLLTCYSR---------NGFLDEAKRVFYEMGEI 193 (677)
Q Consensus 136 ~ll~a~---~~~--~-~----~~~~i~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~f~~m~~~ 193 (677)
.-+.-. ... + . ..+++++..+. .|. .++ ..+|...+..... .++++.++++|++. ..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra-L~ 222 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL-LC 222 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH-Hh
Confidence 333221 111 0 0 33445544443 244 332 3455555544332 22344455555554 11
Q ss_pred -CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHh--CCC----Cch
Q 037537 194 -KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKS--GFH----QNS 266 (677)
Q Consensus 194 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~----~~~ 266 (677)
|.. .+..+-..| ...... + +..+-..++.- ...+++.|+..+..+.+. ++. ...
T Consensus 223 iP~~-~~~~~w~~Y-------------~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 223 QPMD-CLESMWQRY-------------TQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp SCCS-SHHHHHHHH-------------HHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred CccH-HHHHHHHHH-------------HHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 100 011111111 111000 0 00000000000 000112222222221110 110 000
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhCCCCC------hhhHHHHHhhhcccCC-------CHHHHHHHHHHHhhcCCCCC
Q 037537 267 HIGSGLIDLYAKCSGDMRDCMKVFEEIPQPD------LVLWNTMISGYSQKEE-------YSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 267 ~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~~~-------~~~~A~~l~~~m~~~g~~p~ 333 (677)
... .....+.++ ...|...|.---.+ + ..+.+..+|++.... ..-+
T Consensus 284 ~~~-------------------~~~~~p~~~~~~~~ql~lW~~yi~fEk~~-~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 284 NQA-------------------TESNLPKPNEYDVQQLLIWLEWIRWESDN-KLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp TTC-------------------CTTTSCCTTCCCHHHHHHHHHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred ccc-------------------hhccCCCCchhHHHHHHHHHHHHHHHHhC-CccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 000 000000000 12233333322111 1 112344556666553 1223
Q ss_pred cchHHHHHHHhhccC-hhHHH-HHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-------------C
Q 037537 334 DCSFVCVISACSNLS-PSLGK-QIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-------------H 398 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~-~~~~~-~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------------~ 398 (677)
...|.....-+...+ .+.+. .++...+.. .|.+..++-.++...-+.|+++.|+++|+.+.+ |
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 344444444455556 66675 888777652 233366778888888999999999999987753 2
Q ss_pred C------------cchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHh
Q 037537 399 N------------TVSLNSMIAGYAQHGIGMEALRLFEWMLET-NIPPTNITFVSVLSACAH-TGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 399 ~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~ 464 (677)
+ ...|...+....+.|..+.|..+|.+.++. + .+....|......-.+ .++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235888888888899999999999999886 2 1223334332222223 35689999999999986
Q ss_pred cCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC---CCchhHHHHHHHHHhcCChHHHHH
Q 037537 465 FGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP---SNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
+. -+...+...++...+.|+.+.|..+|++.... .| .....|...+..-...|+.+.+.+
T Consensus 500 ~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~---------------~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 500 FA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDK---------------ISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp HT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT---------------SSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33 34556778888888999999999999986421 12 234578888888889999999999
Q ss_pred HHHHHHhCC
Q 037537 542 IRRLMRDRG 550 (677)
Q Consensus 542 ~~~~m~~~g 550 (677)
+.++|.+.-
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-09 Score=104.63 Aligned_cols=167 Identities=10% Similarity=0.050 Sum_probs=133.0
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--C-Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTV-SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
..++..++..+.+.|++++|..+|++..+ | +.. .|..+...+.+.|+.++|..+|++.++.. +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 56778889999999999999999998765 3 343 79999999999999999999999999854 3444555544333
Q ss_pred Hh-ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC-Cchh
Q 037537 445 CA-HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS-NAVP 522 (677)
Q Consensus 445 ~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~-~~~~ 522 (677)
.. ..|+.++|..+|+...+.+ +-+...|..+++.+.+.|++++|..+|++....+ .+.|+ +...
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------~l~p~~~~~l 243 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG------------SLPPEKSGEI 243 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS------------SSCGGGCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc------------CCCHHHHHHH
Confidence 22 3799999999999998762 2357889999999999999999999999773110 12443 5678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
|..++..+...|+.++|..+++++.+..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-09 Score=108.45 Aligned_cols=225 Identities=11% Similarity=0.100 Sum_probs=166.5
Q ss_pred HHHHHcCCCHHHHHHHHhhCCC-----CC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CC-cchHHHHHH
Q 037537 274 DLYAKCSGDMRDCMKVFEEIPQ-----PD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PD-DCSFVCVIS 342 (677)
Q Consensus 274 ~~y~~~g~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~-~~t~~~ll~ 342 (677)
..+...|+ +++|...|++..+ ++ ..++..+...|... |++++|+..+.+..+.... ++ ....
T Consensus 109 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~----- 181 (378)
T 3q15_A 109 MYEFDQKE-YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRT----- 181 (378)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHH-----
T ss_pred HHHHHHCC-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhH-----
Confidence 34455567 8888777776532 22 34677777788888 9999999998887653111 11 0000
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHc
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQH 413 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 413 (677)
..+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...
T Consensus 182 --------------------------~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 182 --------------------------IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 55678889999999999999998877643 12 34688899999999
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhcC
Q 037537 414 GIGMEALRLFEWMLE-----TNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRAG 485 (677)
Q Consensus 414 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g 485 (677)
|++++|++.|++..+ .. +....++..+...+...|++++|..+++...+...-.++ ...+..+...|...|
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999887 32 223677888889999999999999999998875322122 345666777788888
Q ss_pred C---hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 486 K---LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 486 ~---~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+ +++|...+++....| .....+..++..|...|++++|...+++..+
T Consensus 315 ~~~~~~~al~~~~~~~~~~----------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEKKNLHA----------------YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCChh----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 999999998864221 2335678999999999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-08 Score=100.91 Aligned_cols=178 Identities=9% Similarity=0.078 Sum_probs=93.0
Q ss_pred hHHHHHhccCCC---C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHH
Q 037537 82 ASARQLFDQIPQ---P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIY 157 (677)
Q Consensus 82 ~~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~ 157 (677)
++|..+|++..+ | +...|..++..+.+.|++++|..+|++..+. .|+...
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~------------------------ 134 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT------------------------ 134 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTH------------------------
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCcc------------------------
Confidence 555555554332 2 2335666666666666666666666666542 222110
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHH-HhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAY-GQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
.+|..+...+.+.|++++|+++|++. ...| +...|....... ...|++++|..+|++..+... -+...+
T Consensus 135 -------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 206 (308)
T 2ond_A 135 -------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYV 206 (308)
T ss_dssp -------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHH
Confidence 13344555555556666666666655 1112 222222222111 124666666666666655321 134555
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhC-CCC--chhhHHHHHHHHHHcCCCHHHHHHHHhhCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSG-FHQ--NSHIGSGLIDLYAKCSGDMRDCMKVFEEIP 294 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~~A~~~f~~~~ 294 (677)
..++..+.+.|+++.|+.+++.+++.. ++| ...++..++..+.+.|+ .+.|..+++++.
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~-~~~a~~~~~~a~ 268 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-LASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 555566666666666666666666642 333 34566666666666666 777776666654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-09 Score=97.64 Aligned_cols=160 Identities=11% Similarity=0.092 Sum_probs=113.4
Q ss_pred ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 297 DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 297 ~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
+...|..+...|.+. |++++|++.|++..+. .|+. +.++..+.
T Consensus 4 ~~~iy~~lG~~~~~~-g~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la 46 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTK-GDFDGAIRAYKKVLKA--DPNN----------------------------------VETLLKLG 46 (184)
T ss_dssp CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHH
Confidence 345666666777766 7777777777776653 3432 45566677
Q ss_pred HHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 453 (677)
..|.+.|++++|...+..... .+...+..+...+...++++.|.+.+.+..+.. +.+...+..+...+...|++++
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchh
Confidence 777777777777777766543 345566667777778888888888888877743 3346677777777888888888
Q ss_pred HHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 454 GQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|.+.|+...+. .| +...|..+..+|.+.|++++|.+.|++.
T Consensus 126 A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 126 AIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887764 34 4667777888888888888888888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-10 Score=113.37 Aligned_cols=236 Identities=16% Similarity=0.150 Sum_probs=147.2
Q ss_pred chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--------C---ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcC---C
Q 037537 265 NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--------P---DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVG---Y 330 (677)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g---~ 330 (677)
+..++..+...|...|+ +++|...|+++.+ . ....|..+...|... |++++|+..|++..... .
T Consensus 26 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHh
Confidence 34566777777887777 8888887776542 1 224566677777777 78888888877765421 0
Q ss_pred CCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----------CC
Q 037537 331 HPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----------HN 399 (677)
Q Consensus 331 ~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----------~~ 399 (677)
.++. +....++..+...|...|++++|...|++..+ ..
T Consensus 104 ~~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 104 GKDH-------------------------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp CTTC-------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCC-------------------------------hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 0111 11155667788888888888888888876542 12
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------C
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLET------NIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMF------G 466 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~ 466 (677)
...|..+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|..+++.+.+.. .
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345777788888888888888888888763 21333 3467777778888888888888888877531 0
Q ss_pred CccCh-------HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHH
Q 037537 467 FEPEG-------EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEV 539 (677)
Q Consensus 467 ~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a 539 (677)
..+.. ..+..+...+...+.+.+|...++.. ....|.++.+|..++.+|...|++++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC---------------KVDSPTVTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC------------------------CHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc---------------CCCCchHHHHHHHHHHHHHHCCCHHHH
Confidence 11111 11112222233333444444444333 344566778899999999999999999
Q ss_pred HHHHHHHHh
Q 037537 540 ATIRRLMRD 548 (677)
Q Consensus 540 ~~~~~~m~~ 548 (677)
.+.+++..+
T Consensus 298 ~~~~~~al~ 306 (311)
T 3nf1_A 298 ETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-09 Score=107.71 Aligned_cols=287 Identities=10% Similarity=-0.049 Sum_probs=193.1
Q ss_pred HHhcCChhHHHHHHhhc-----C--CCCCeeeHHHHHHHH--HhCCCchHHH-----------HHHHHHHHCCCCCCH--
Q 037537 174 YSRNGFLDEAKRVFYEM-----G--EIKDEVSWNSMVVAY--GQHREGLEAL-----------QLFQEMVSLQLGLDM-- 231 (677)
Q Consensus 174 ~~~~g~~~~A~~~f~~m-----~--~~~~~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~pd~-- 231 (677)
+.+.+++++|..+++++ . ..+++..|-.++..- ...++.+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678899998888887 1 223333333333221 1122233333 566665432111110
Q ss_pred --hHHHHHHHHHccCCChHHHHHHHHHHHHhC--CC--C-chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-----CC--
Q 037537 232 --YTLASILTAFTSLEDLVGGLQFHAHLIKSG--FH--Q-NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----PD-- 297 (677)
Q Consensus 232 --~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~--~-~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~-- 297 (677)
..+......+...|+++.|...+..+.+.- .+ + ...++..+...|...|+ .++|...+++..+ ++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ-TYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCccch
Confidence 011124445678899999999999887641 11 1 23577888889999898 9988888876541 22
Q ss_pred ---hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhH
Q 037537 298 ---LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNN 373 (677)
Q Consensus 298 ---~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 373 (677)
..+++.+...|... |++++|+..|.+..+..-. ++.... ..++.
T Consensus 181 ~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~ 228 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQLM-------------------------------GRTLY 228 (383)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHH-------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHHH-------------------------------HHHHH
Confidence 24677888888888 9999999999987753111 111111 45678
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT-NITFVS 440 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~ 440 (677)
.+...|...|++++|...|++..+ .+ ..++..+...|...|++++|...+++..+..- .|. ...+..
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999887643 22 34688899999999999999999999876310 122 234566
Q ss_pred HHHHHhccCC---HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 441 VLSACAHTGK---VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 441 ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+...+...|+ +++|..+++.. +..| ....+..+...|.+.|++++|.+.+++.
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777888888 77777777766 3334 3557788999999999999999999865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=5e-10 Score=111.48 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCC-----------CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc---CCCCC
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----------PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRV---GYHPD 333 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~---g~~p~ 333 (677)
++..+...|...|+ +++|...|++..+ .....|..+...|... |++++|+++|+++... ...++
T Consensus 113 ~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 113 TLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444445555555 5555555444321 1234567777778888 8899999988887653 01111
Q ss_pred cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCC
Q 037537 334 DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMP 396 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 396 (677)
.... ..++..+...|.+.|++++|...|++..
T Consensus 191 ~~~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 191 DPNV-------------------------------AKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CHHH-------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHH-------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111 4455667777777777777777776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.2e-09 Score=98.13 Aligned_cols=161 Identities=10% Similarity=-0.019 Sum_probs=133.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 443 (677)
+..+..+...|.+.|++++|...|++..+ ++...|..+..+|...|++++|+..|++..+. .|+ ..++..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 56777888899999999999999997653 56677777999999999999999999999985 455 678888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccC-h-------HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPE-G-------EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
.+...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.+++. +++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a---------------l~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA---------------TDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------TTS
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH---------------Hhc
Confidence 999999999999999999875 443 3 45778888899999999999999877 355
Q ss_pred CCC--CchhHHHHHHHHHhcCCh---------------------------HHHHHHHHHHHhC
Q 037537 516 EPS--NAVPYVMLANIYAASGKW---------------------------EEVATIRRLMRDR 549 (677)
Q Consensus 516 ~p~--~~~~~~~l~~~y~~~g~~---------------------------~~a~~~~~~m~~~ 549 (677)
+|+ ++.+|..+..+|...|+. ++|...+++..+.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666 667777888887777776 8888888887664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-09 Score=109.78 Aligned_cols=161 Identities=10% Similarity=-0.000 Sum_probs=143.7
Q ss_pred cchhHHHHHHHHccCCH-HHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNL-EDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.++. .|+..++..+...
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~ 179 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHH
Confidence 66778888899999999 999999998754 35678999999999999999999999999984 5888889999999
Q ss_pred Hhcc---------CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc--------CChHHHHHHHHhCCCCCChHHH
Q 037537 445 CAHT---------GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA--------GKLTDAERLIEAMPFNPGSIAL 506 (677)
Q Consensus 445 ~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~ 506 (677)
+... |++++|...|+...+. .| +...|..+..+|.+. |++++|.+.|++.
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a--------- 247 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA--------- 247 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH---------
Confidence 9999 9999999999999875 45 578889999999998 9999999999876
Q ss_pred HHHHHHhccCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 507 KAANHFLQLEP---SNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 507 ~~~~~l~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++| .++..|..+..+|...|++++|.+.+++..+.
T Consensus 248 ------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 248 ------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp ------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788 89999999999999999999999999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-08 Score=84.61 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++.+.+. . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 57778888899999999999999998754 445677888888888999999999999998875 2 33567788889999
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+.|++++|.+.++++ ++..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKA---------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999876 3556777888999999999999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-07 Score=95.96 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=74.0
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCC----CCCc-chHHH-----HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHH
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMP----EHNT-VSLNS-----MIAGYAQHGIGMEALRLFEWMLETNIPPT---NIT 437 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~-~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t 437 (677)
.+..+...+...|++++|...+++.. .++. ..|.. .+..+...|+.++|...+++.......++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 34556666667777777777666542 1111 12222 22335677777777777777654321111 224
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhc---CCccCh-HHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMF---GFEPEG-EHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+..+...+...|++++|...++...... +..++. ..+..+..+|.+.|+.++|.+.+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666777788888877777765431 211222 35556667777888888888877765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-07 Score=96.63 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=137.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCC-CCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFD-TDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 180 (677)
....+...|++++|+..|++..+.-.. +|... ...++..+...|...|++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~a~~~~~lg~~y~~~~~~ 157 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-----------------------------KAEFHFKVAEAYYHMKQT 157 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-----------------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-----------------------------HHHHHHHHHHHHHHcCCc
Confidence 344567888999999998887653211 22111 122345666778888888
Q ss_pred hHHHHHHhhc----CCCCC-----eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHhHHHHHHHHHccCCChHHH
Q 037537 181 DEAKRVFYEM----GEIKD-----EVSWNSMVVAYGQHREGLEALQLFQEMVSLQL-GLDMYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 181 ~~A~~~f~~m----~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a 250 (677)
+.|...+++. ...++ ..+++.+...|...|++++|++.|++..+..- .++..
T Consensus 158 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~------------------ 219 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR------------------ 219 (378)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------
T ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH------------------
Confidence 8887777665 11111 33566777777778888888877777654210 00100
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-------C-ChhhHHHHHhhhcccCCCHHHHHHHH
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-------P-DLVLWNTMISGYSQKEEYSDQALGCF 322 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-------~-~~~~~~~li~~~~~~~~~~~~A~~l~ 322 (677)
....++..+...|...|+ .++|...|++..+ | ...++..+...|.+. |++++|...+
T Consensus 220 -------------~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 284 (378)
T 3q15_A 220 -------------FIAISLLNIANSYDRSGD-DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA-GQTQKAFQFI 284 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 011233344444445455 5555555444321 1 234566667777777 8888888888
Q ss_pred HHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC---HHHHHHHHhcCCCC-
Q 037537 323 KKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN---LEDARRLFDRMPEH- 398 (677)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~---~~~A~~~~~~~~~~- 398 (677)
++.....-..+...+ ...++.+...|...|+ +++|...++.....
T Consensus 285 ~~al~~~~~~~~~~~-------------------------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~ 333 (378)
T 3q15_A 285 EEGLDHITARSHKFY-------------------------------KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHA 333 (378)
T ss_dssp HHHHHHCCTTCCSCH-------------------------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHH-------------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChh
Confidence 887764333222222 2233555566666777 77777777765431
Q ss_pred -CcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 399 -NTVSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 399 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
....+..+...|...|++++|...|++..+
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123455677777888888888888777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=86.01 Aligned_cols=159 Identities=15% Similarity=0.060 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhc
Q 037537 67 SFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSN 143 (677)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 143 (677)
.+..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|...+++..+.. |
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--P-------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--------------
Confidence 455666777778888888888887765 245667778888888888888888888877642 2
Q ss_pred chhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHH
Q 037537 144 NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQE 221 (677)
Q Consensus 144 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 221 (677)
.+..++..+...|...|++++|.+.|++. ....+...|..+...+...|++++|++.|++
T Consensus 74 ------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 74 ------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 23334456667777788888888888776 1223556677777778888888888888888
Q ss_pred HHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHh
Q 037537 222 MVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 222 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
..+.. +.+..++..+...+...|+++.|...+..+.+.
T Consensus 136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 76653 234566666667777777777777777766654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-07 Score=92.88 Aligned_cols=223 Identities=13% Similarity=0.033 Sum_probs=145.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCChHHHHHHHhhccc-----cCh----hHHHHHHHH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFSAY----LSNHFILLYSKCGCLSAAHHAFNQTQH-----ANV----FSFNVLLAA 74 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~li~~ 74 (677)
.+...|+++.|...++..+...-..+.. .++.+...+...|++++|.+.+++... ++. .+.+.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4567899999999999988765222222 456666778888999999999988776 222 235667778
Q ss_pred HHhcCChhHHHHHhccCCC-------C----CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhc
Q 037537 75 YARQLRIASARQLFDQIPQ-------P----DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSN 143 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 143 (677)
|...|++++|...+++..+ + ....+..+...+...|++++|...+++............
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 172 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---------- 172 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG----------
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH----------
Confidence 8889999999888876542 1 123456677788889999999999988775432111100
Q ss_pred chhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCe-eeHHH-----HHHHHHhCCCchH
Q 037537 144 NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDE-VSWNS-----MVVAYGQHREGLE 214 (677)
Q Consensus 144 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~-~~~~~-----li~~~~~~g~~~~ 214 (677)
....+..+...+...|++++|...+++. ...++. ..|.. .+..+...|++++
T Consensus 173 -------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 173 -------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp -------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 1123455667788889999988888776 112221 22322 2234668888888
Q ss_pred HHHHHHHHHHCCCCCC---HhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 215 ALQLFQEMVSLQLGLD---MYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 215 A~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
|...+++.......++ ...+..+...+...|++++|...+..+.+
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888765332211 12344555666677777777777666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-08 Score=92.34 Aligned_cols=203 Identities=10% Similarity=0.010 Sum_probs=128.3
Q ss_pred CchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHH
Q 037537 264 QNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVC 339 (677)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (677)
.|+..+..+...|.+.|+ +++|...|++.. . ++...|..+...+... |++++|+..|++..+. .|+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~--~p~~----- 75 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKN-YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKK--NYNL----- 75 (228)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT--TCSH-----
T ss_pred cCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHh--Ccch-----
Confidence 345566666677777777 777777777653 2 5555666666666666 7777777777776653 3331
Q ss_pred HHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-Cc-------chHHHHHHH
Q 037537 340 VISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NT-------VSLNSMIAG 409 (677)
Q Consensus 340 ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~-------~~~~~li~~ 409 (677)
..++..+...|.+.|++++|...|++..+ | +. ..|..+...
T Consensus 76 -----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 76 -----------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence 55667788888888888888888877653 2 33 346677777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCC
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGK 486 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 486 (677)
+...|++++|++.|++.++. .|+ ...+..+...+.. .+..+++.+... + ..+...|.... ....+.
T Consensus 127 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~-----~~~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~ 195 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYN-----NGADVLRKATPL-A-SSNKEKYASEK--AKADAA 195 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHH-----HHHHHHHHHGGG-T-TTCHHHHHHHH--HHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHH-----HHHHHHHHHHhc-c-cCCHHHHHHHH--HHHHHH
Confidence 77888888888888888773 455 3455555555543 344445555443 1 22333443332 223455
Q ss_pred hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH
Q 037537 487 LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY 530 (677)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y 530 (677)
+++|...+++. ++++|+++.+...|..+.
T Consensus 196 ~~~A~~~~~~a---------------~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 196 FKKAVDYLGEA---------------VTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------hhcCCCCHHHHHHHHHHH
Confidence 67777776654 688898887777766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=88.32 Aligned_cols=142 Identities=9% Similarity=0.058 Sum_probs=117.0
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV 451 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 451 (677)
|..+|...|++++|...++..... +...+-.+...|.+.|++++|++.|++.++.. +-+..++..+...+...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 445666788999999999887653 45677889999999999999999999999853 33478899999999999999
Q ss_pred HHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHH-HHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 452 AEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERL-IEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
++|...|+...+. .| +...+..+..+|.+.|++++|.+. +++. ++++|+++.+|.....+
T Consensus 82 ~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a---------------l~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 82 DKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERA---------------AKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH---------------HHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------HHhCcCCHHHHHHHHHH
Confidence 9999999999875 56 478899999999999999876654 4544 68899999999999998
Q ss_pred HHhcCC
Q 037537 530 YAASGK 535 (677)
Q Consensus 530 y~~~g~ 535 (677)
+...|+
T Consensus 144 l~~~G~ 149 (150)
T 4ga2_A 144 LDCEGE 149 (150)
T ss_dssp HHTCCC
T ss_pred HHHhCc
Confidence 888775
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.2e-08 Score=107.74 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=114.7
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
..+|+.|-..|.+. |++++|++.|++..+. .|+. ..+++.|..
T Consensus 9 a~al~nLG~~~~~~-G~~~eAi~~~~kAl~l--~P~~----------------------------------~~a~~nLg~ 51 (723)
T 4gyw_A 9 ADSLNNLANIKREQ-GNIEEAVRLYRKALEV--FPEF----------------------------------AAAHSNLAS 51 (723)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHH
Confidence 34566666677777 7777777777776653 3442 556677777
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.|.+.|++++|...|++..+ .+...|+.+...|...|++++|++.|++.++. .|+ ..++..+..++...|++++
T Consensus 52 ~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~e 129 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPE 129 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77777888888777776543 34567777888888888888888888888774 444 5677888888888888888
Q ss_pred HHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 454 GQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|...|++..+. .|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 130 Ai~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 130 AIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 88888887764 554 667777888888888888888777654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-08 Score=96.06 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=133.8
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET------NI 431 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 431 (677)
..++..+...|...|++++|...|++..+ ....+|..+...|...|++++|++.|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 56778889999999999999999887642 13457888999999999999999999998864 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCC----
Q 037537 432 PPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMF-----GFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFN---- 500 (677)
Q Consensus 432 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 500 (677)
.|+ ..++..+...+...|++++|..+++.+.+.+ +-.| ....+..+..+|.+.|++++|.+.+++....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 233 5678888889999999999999999987641 1123 3567888999999999999999999865210
Q ss_pred ------CChHH---------------------H---HHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 501 ------PGSIA---------------------L---KAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 501 ------~~~~~---------------------~---~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+.... . ...+.+....|....++..|+.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000 0 000011112355567899999999999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-07 Score=88.81 Aligned_cols=186 Identities=11% Similarity=0.087 Sum_probs=142.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--H-N---TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT-NITFVS 440 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ 440 (677)
+..+-.+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++.++..- .|+ ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 56667788889999999999999998865 3 2 45688889999999999999999999998531 122 345666
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHHhcCCccC-hHHH-----------------HHHHHHHhhcCChHHHHHHH
Q 037537 441 VLSACAH--------TGKVAEGQKYFSMMKDMFGFEPE-GEHY-----------------SCMIDLLGRAGKLTDAERLI 494 (677)
Q Consensus 441 ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~ 494 (677)
+..++.. .|++++|...|+.+.+. .|+ .... ..+...|.+.|++++|...|
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7777777 99999999999999976 343 2233 45678899999999999999
Q ss_pred HhCCCCCChHHHHHHHHHhccCCCC---chhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCceeEEE
Q 037537 495 EAMPFNPGSIALKAANHFLQLEPSN---AVPYVMLANIYAAS----------GKWEEVATIRRLMRDRGVQKKPGFSWIE 561 (677)
Q Consensus 495 ~~m~~~~~~~~~~~~~~l~~l~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~ 561 (677)
++. ++..|++ +..+..++.+|... |++++|...+++..+.- |
T Consensus 172 ~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p-------- 226 (261)
T 3qky_A 172 EAV---------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--P-------- 226 (261)
T ss_dssp HHH---------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--T--------
T ss_pred HHH---------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--C--------
Confidence 876 3455553 45788899999876 99999999999987643 2
Q ss_pred ECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Q 037537 562 VKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQ 595 (677)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 595 (677)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 145556666667776666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-07 Score=80.19 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=107.1
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 457788899999999999999988753 456788889999999999999999999999864 4557788888999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999875 2335778888999999999999999999876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-07 Score=89.70 Aligned_cols=166 Identities=8% Similarity=0.046 Sum_probs=114.4
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
.+|+.+...|.+. |++++|+..|++..... |+ .+ -......+++.+...
T Consensus 78 ~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~--~~-------------~g---------------~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 78 NTYVEAYKCFKSG-GNSVNAVDSLENAIQIF--TH-------------RG---------------QFRRGANFKFELGEI 126 (292)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH--HH-------------TT---------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH--HH-------------cC---------------CHHHHHHHHHHHHHH
Confidence 3566666667767 77788877777665421 00 00 000003466788889
Q ss_pred HHcc-CCHHHHHHHHhcCCC--C---C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 037537 379 YSKC-GNLEDARRLFDRMPE--H---N----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN------ITFVSVL 442 (677)
Q Consensus 379 y~k~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll 442 (677)
|.+. |++++|...|++..+ | + ..+|+.+...|.+.|++++|+..|++..+....... .++..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 9996 999999999987654 1 1 346888999999999999999999999985422221 1567777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCccChH------HHHHHHHHHh--hcCChHHHHHHHHhCC
Q 037537 443 SACAHTGKVAEGQKYFSMMKDMFGFEPEGE------HYSCMIDLLG--RAGKLTDAERLIEAMP 498 (677)
Q Consensus 443 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~m~ 498 (677)
.++...|++++|...|+...+ +.|+.. .+..++..|. ..+++++|.+.|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 788899999999999999874 455422 2344556664 5678999999998874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=93.07 Aligned_cols=206 Identities=12% Similarity=-0.000 Sum_probs=144.1
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 283 MRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 283 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
+++|...|++. ...|... |++++|++.|.+........
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~-g~~~~A~~~~~~al~~~~~~------------------------------ 70 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLR-KELNLAGDSFLKAADYQKKA------------------------------ 70 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHT-TCTHHHHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHH-----------HHHHHHc-CCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 77777776654 3455666 88889988888775421000
Q ss_pred hcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC
Q 037537 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQH-GIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 363 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~ 432 (677)
+-.+....+++.+...|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++..-.
T Consensus 71 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 71 GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 00001145778889999999999999998887653 11 34788899999996 9999999999998873210
Q ss_pred -CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCc-cCh-----HHHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 037537 433 -PT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE-PEG-----EHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501 (677)
Q Consensus 433 -p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (677)
.+ ..++..+...+...|++++|...|+...+. ... +.. ..|..+..++...|++++|...+++..
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--- 226 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ--- 226 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence 11 346888889999999999999999999875 222 121 156778888999999999999999873
Q ss_pred ChHHHHHHHHHhccCCCCch-----hHHHHHHHHH--hcCChHHHHHHHHHH
Q 037537 502 GSIALKAANHFLQLEPSNAV-----PYVMLANIYA--ASGKWEEVATIRRLM 546 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~-----~~~~l~~~y~--~~g~~~~a~~~~~~m 546 (677)
+++|.... .+..++.+|. ..+++++|+..++++
T Consensus 227 ------------~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 227 ------------SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp ------------CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred ------------hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 44444332 3445666665 457788888888654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-07 Score=82.61 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=123.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA- 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a- 444 (677)
......+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+..........
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH
Confidence 34456677888999999999999999886 45678999999999999999999999998764 3454333222111
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC--ch
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN--AV 521 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~--~~ 521 (677)
+...+...++...++...+. .| +...+..+...|.+.|++++|.+.++++ ++.+|+. +.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~ 145 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNI---------------LKVNLGAQDGE 145 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCTTTTTTH
T ss_pred HHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH---------------HHhCcccChHH
Confidence 12222333568888888764 56 4788899999999999999999999876 4556643 56
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..+..+|...|+.++|...+++...
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999999887643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=104.25 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=123.8
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++.++.. +-+...+..+..++
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATA 511 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 56677888899999999999999998765 366789999999999999999999999999853 33467888899999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
...|++++ ...|+.+.+. .| +...|..+..+|.+.|++++|.+.+++.. +++|.+..+|.
T Consensus 512 ~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------------~l~P~~~~a~~ 572 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVP---------------PTSRHFTTARL 572 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---------------TTSTTHHHHHH
T ss_pred HHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------ccCcccHHHHH
Confidence 99999999 9999999865 45 46788999999999999999999999884 67788888999
Q ss_pred HHHHHHHhcCC
Q 037537 525 MLANIYAASGK 535 (677)
Q Consensus 525 ~l~~~y~~~g~ 535 (677)
.+..+|...|+
T Consensus 573 ~~~~~~~~~~~ 583 (681)
T 2pzi_A 573 TSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHHccCC
Confidence 99999877665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-06 Score=82.90 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=121.5
Q ss_pred HHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 286 CMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 286 A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
|...|++.. .++..++..+..++... |++++|++++.+.+..|-.++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~---------------------------- 135 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGT---------------------------- 135 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTH----------------------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCc----------------------------
Confidence 455566554 24555566777778888 9999999999887654322221
Q ss_pred hcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCC-------cchHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCC
Q 037537 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHN-------TVSLNSMIAG--YAQHG--IGMEALRLFEWMLETNI 431 (677)
Q Consensus 363 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-------~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~ 431 (677)
...+..++..|.+.|+.+.|.+.+++|.+.+ -.+...+..+ ....| +..+|..+|+++.+.
T Consensus 136 ------lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-- 207 (310)
T 3mv2_B 136 ------TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-- 207 (310)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence 5566778899999999999999999887533 3455566666 33344 899999999999764
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CC------cc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF-GF------EP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|+..+-..++.++.+.|++++|.+.++.+.+.+ .+ .| +..+...+|......|+ +|.++++++
T Consensus 208 ~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 208 FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 4664444556668899999999999999776542 00 24 46666566666666676 777777766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-07 Score=99.25 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHH
Q 037537 349 PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEW 425 (677)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 425 (677)
.+.+...+...++. .|+....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 5 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 5 GPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444332 334366677777777777777777777776544 2455677777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc---CChHHHHHHHHhCCCCC
Q 037537 426 MLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA---GKLTDAERLIEAMPFNP 501 (677)
Q Consensus 426 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 501 (677)
..+.. +.+...+..+...+...|++++|.+.++...+. .| +...+..+..+|.+. |+.++|.+.+++.
T Consensus 83 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a---- 154 (568)
T 2vsy_A 83 ASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA---- 154 (568)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH----
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH----
Confidence 77643 334567777777777777777777777777654 33 356667777777777 7777777777655
Q ss_pred ChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 502 GSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
++.+|.+...|..+.
T Consensus 155 -----------l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 -----------VAQGVGAVEPFAFLS 169 (568)
T ss_dssp -----------HHHTCCCSCHHHHTT
T ss_pred -----------HhcCCcccChHHHhC
Confidence 567777776666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-07 Score=84.11 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=122.0
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN----ITFV 439 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 439 (677)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3455667778889999999999998764 33 236778889999999999999999999884 3442 1333
Q ss_pred HHHHHHh------------------ccCCHHHHHHHHHHhHHhcCCccCh-HHH-----------------HHHHHHHhh
Q 037537 440 SVLSACA------------------HTGKVAEGQKYFSMMKDMFGFEPEG-EHY-----------------SCMIDLLGR 483 (677)
Q Consensus 440 ~ll~a~~------------------~~g~~~~a~~~~~~m~~~~~~~p~~-~~~-----------------~~li~~~~~ 483 (677)
.+..++. ..|+.++|...|+.+.+. .|+. ..+ ..+...|.+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 367899999999999865 3442 222 245667889
Q ss_pred cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 484 AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA---VPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
.|++++|...|+++ ++..|+++ .++..+..+|.+.|++++|.+.++.+...+
T Consensus 160 ~~~~~~A~~~~~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 160 RGAWVAVVNRVEGM---------------LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HTCHHHHHHHHHHH---------------HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHHHH---------------HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999999999876 45566654 568999999999999999999999988765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=88.36 Aligned_cols=165 Identities=10% Similarity=0.040 Sum_probs=108.8
Q ss_pred ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 297 DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 297 ~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
+...+-.+...+.+. |++++|+..|+++... .|+.... ..++..+.
T Consensus 14 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~--~p~~~~~-------------------------------~~a~~~lg 59 (261)
T 3qky_A 14 SPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTY--GRTHEWA-------------------------------ADAQFYLA 59 (261)
T ss_dssp SHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGG--CSCSTTH-------------------------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CCCCcch-------------------------------HHHHHHHH
Confidence 344455555556666 7777777777777664 2433221 33445566
Q ss_pred HHHHccCCHHHHHHHHhcCCC--CC----cchHHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCC-HHHH---
Q 037537 377 AMYSKCGNLEDARRLFDRMPE--HN----TVSLNSMIAGYAQ--------HGIGMEALRLFEWMLETNIPPT-NITF--- 438 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~-~~t~--- 438 (677)
..|.+.|++++|...|++..+ |+ ...+..+..++.. .|++++|+..|++.++. .|+ ....
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 137 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT 137 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH
Confidence 667777777777777776543 21 2345566666766 78888888888887774 343 2222
Q ss_pred --------------HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc----------CChHHHHHH
Q 037537 439 --------------VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA----------GKLTDAERL 493 (677)
Q Consensus 439 --------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~ 493 (677)
..+...+...|++++|...|+.+.+.+.-.| ....+..+..+|.+. |++++|.+.
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 4556778899999999999999987622222 245677778888766 889999999
Q ss_pred HHhC
Q 037537 494 IEAM 497 (677)
Q Consensus 494 ~~~m 497 (677)
+++.
T Consensus 218 ~~~~ 221 (261)
T 3qky_A 218 YERL 221 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-07 Score=89.84 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=128.0
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITF-VSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a 444 (677)
......+...+.+.|++++|...|++..+ .+...+..+...|.+.|++++|...+++.... .|+.... ......
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 55667778888899999999999998754 35668888999999999999999999998774 4664432 222333
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC--ch
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN--AV 521 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~--~~ 521 (677)
+...+..++|...++...+. .| +...+..+..+|.+.|++++|.+.++++ ++.+|++ ..
T Consensus 195 l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~---------------l~~~p~~~~~~ 256 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGH---------------LRXDLTAADGQ 256 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTGGGGH
T ss_pred HHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHH---------------Hhcccccccch
Confidence 56777788888888888865 45 5788889999999999999999999877 4667776 78
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988877643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.7e-07 Score=88.13 Aligned_cols=211 Identities=15% Similarity=0.184 Sum_probs=113.6
Q ss_pred HHHHHHHHhhCCCCC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhc------CCCCC-cchHHHHHHHhhccC-hh
Q 037537 283 MRDCMKVFEEIPQPD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRV------GYHPD-DCSFVCVISACSNLS-PS 350 (677)
Q Consensus 283 ~~~A~~~f~~~~~~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~~-~~ 350 (677)
+++|.++++++..++ ..+|..+...|... |++++|+..|.+.... +-.|+ ..++..+-..+...+ .+
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 666666666654333 45788888889888 9999999999988764 11222 223444444455555 66
Q ss_pred HHHHHHHHHHHhh------cccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC-----------CcchHHHHHHHHHHc
Q 037537 351 LGKQIHALTIKIE------IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH-----------NTVSLNSMIAGYAQH 413 (677)
Q Consensus 351 ~~~~i~~~~~~~~------~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~ 413 (677)
.+...+...++.. ..+....++..+...|...|++++|...|++..+. ...++..+...|...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 6666555555431 11222445555666666666666666655544221 123455555666666
Q ss_pred CChHHHHHHHHHHHHC-------CCCCCHH-HHHHHHHHHhccC------CHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 414 GIGMEALRLFEWMLET-------NIPPTNI-TFVSVLSACAHTG------KVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~-------g~~p~~~-t~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
|++++|+..|++..+. ...|... .+..+.......+ .+.++...++... ...| ....+..+.
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la 259 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLG 259 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHH
Confidence 6666666666665542 1122211 1221111111111 1222222222111 0112 355788899
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 037537 479 DLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m 497 (677)
.+|.+.|++++|.+++++.
T Consensus 260 ~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.55 E-value=6e-07 Score=87.05 Aligned_cols=165 Identities=10% Similarity=0.031 Sum_probs=122.4
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPEH-----NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP-----TNITFVSVL 442 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~ll 442 (677)
..+...|...|++++|.+++.+.... +...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+...+.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHH
Confidence 46678888899999999999987443 345677788999999999999999999988 467 366667777
Q ss_pred HHH--hccC--CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC-CChHHHHHHHHHhccCC
Q 037537 443 SAC--AHTG--KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN-PGSIALKAANHFLQLEP 517 (677)
Q Consensus 443 ~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~l~p 517 (677)
.++ ...| +..+|..+|+++.+. .|+......+..++.+.|++++|++.++.+... |+.. .--..+|
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~------~k~~~~p 252 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE------QKENAVL 252 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT------TCHHHHS
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc------ccccCCC
Confidence 663 3334 899999999999865 455333344445889999999999999865210 0000 0000147
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
+|+.+...++..+...|+ +|.++++++++..
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 888888888888888887 8999999998854
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-06 Score=82.95 Aligned_cols=172 Identities=10% Similarity=0.064 Sum_probs=131.1
Q ss_pred HHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhc
Q 037537 285 DCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEI 364 (677)
Q Consensus 285 ~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~ 364 (677)
.....++.....+...+..+...+.+. |++++|...|++.... .|+.
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~--~P~~------------------------------ 150 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQE-SNYTDALPLLXDAWQL--SNQN------------------------------ 150 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--TTSC------------------------------
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhC-CCHHHHHHHHHHHHHh--CCcc------------------------------
Confidence 333344443334444555666667777 8899999998888764 3443
Q ss_pred ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSL-NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 365 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
..++..+...|.+.|++++|...|++... |+...+ ......+.+.++.++|+..|++..+.. +.+...+..+
T Consensus 151 ----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~l 225 (287)
T 3qou_A 151 ----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQL 225 (287)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHH
Confidence 56678888999999999999999999876 433322 223334677888999999999999864 4457888999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+...|++++|...+..+.+. .|+ ...+..++.+|...|+.++|...+++.
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999999999976 443 678899999999999999999888753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-07 Score=101.27 Aligned_cols=149 Identities=12% Similarity=-0.027 Sum_probs=129.6
Q ss_pred HccCCHHHHHHHHhcCC--------C---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 380 SKCGNLEDARRLFDRMP--------E---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++.++.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998775 2 456688999999999999999999999999853 44577888899999999
Q ss_pred CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
|++++|...|+...+. .| +...|..+..+|.+.|++++ .+.+++. ++++|+++.+|..+.
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a---------------l~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTV---------------WSTNDGVISAAFGLA 541 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHH---------------HHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHH---------------HHhCCchHHHHHHHH
Confidence 9999999999999875 55 57788899999999999998 8887765 688999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 037537 528 NIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+|.+.|++++|.+.+++..+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHcCCHHHHHHHHHhhcc
Confidence 999999999999999987654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=80.97 Aligned_cols=141 Identities=14% Similarity=0.000 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...|+...+. -+.+...+..+..+|.+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 33444555556666666555544 2445555555556666666666666666665543 12234556666666666
Q ss_pred cCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 484 AGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 484 ~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
.|++++|.+.+++... .|+..............|.....|..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666666665410 000000000000001223334889999999999999999999999987754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.7e-06 Score=75.61 Aligned_cols=153 Identities=11% Similarity=0.068 Sum_probs=89.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHHHH-H-HHh
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYNTLIS-A-YAD 108 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~-~-~~~ 108 (677)
.+..+...+.+.|++++|...+++..+ .+...+..+...|.+.|++++|...|+.... |+.. +..+.. . +.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHHHHHHHHh
Confidence 444555666677777777777777666 4455666777777777777777777777654 3222 222111 1 112
Q ss_pred CCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 037537 109 CGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFY 188 (677)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 188 (677)
.+...+|+..|++..+. . +.+...+..+...|...|++++|...|+
T Consensus 87 ~~~~~~a~~~~~~al~~--~--------------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--N--------------------------------PDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--S--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHh--C--------------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 12223345555544432 1 2234455666667777777777777777
Q ss_pred hc-CCCCC---eeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 037537 189 EM-GEIKD---EVSWNSMVVAYGQHREGLEALQLFQEMV 223 (677)
Q Consensus 189 ~m-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 223 (677)
++ ...|+ ...|..+...+...|+.++|...|++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 76 22332 3467777777777777777777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=72.39 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL 480 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 480 (677)
.|......|.+.|++++|++.|++.++.. +.+..+|..+..++...|++++|...|+...+. .| +...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHHHH
Confidence 46667788888899999999998888753 445778888888888999999999999988864 44 46778888889
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
|.+.|++++|.+.|++. ++++|+++.++..|.++
T Consensus 91 ~~~~~~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDA---------------LQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH---------------HHHCcCCHHHHHHHHHh
Confidence 99999999999988866 57888888777766553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-06 Score=75.25 Aligned_cols=130 Identities=15% Similarity=0.078 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 457777888888999999999999988753 445778888888889999999999999998875 22356788888999
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH--HHHHhcCChHHHHHHHHHHHh
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA--NIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~--~~y~~~g~~~~a~~~~~~m~~ 548 (677)
|.+.|++++|.+.+++. +++.|.+...+..+. ..+...|++++|.+.+....+
T Consensus 91 ~~~~~~~~~A~~~~~~a---------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999876 466777777775444 448888999999999887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.2e-06 Score=76.13 Aligned_cols=126 Identities=10% Similarity=-0.008 Sum_probs=108.6
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
.+..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788899999999999999988888999999999999999999999999999864 4457789999999999999
Q ss_pred HHHHHHHHHHhHHhcC-------------Ccc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 451 VAEGQKYFSMMKDMFG-------------FEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~-------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++|...|+...+... ..| ....+..+..+|.+.|++++|.+.+++.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999987411 112 2367888999999999999999999876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-05 Score=81.62 Aligned_cols=125 Identities=13% Similarity=-0.053 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA-HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
..|...+..+.+++..+.|..+|++. +.. .++...|......-. ..++.+.|+.+|+...+.++- +...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 45777777777788899999999999 321 223344432222112 234799999999999987432 3455677888
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
...+.|+.+.|..+|++.. .....|...+..=...|+.+.+.++++++.+
T Consensus 363 ~e~~~~~~~~aR~l~er~~-------------------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-------------------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-------------------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999984 2346688888877888999999998887764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-06 Score=70.45 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=92.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4567778888888899999999998888753 445677888888888899999999999888865 2335677888888
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
.|.+.|++++|.+.++++ ++..|.++..+..+..++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKA---------------LELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHhcc
Confidence 899999999999988876 4667777788888777776544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-05 Score=80.90 Aligned_cols=363 Identities=9% Similarity=-0.014 Sum_probs=178.6
Q ss_pred CC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCC-hhHHHHH
Q 037537 12 RR-DLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLR-IASARQL 87 (677)
Q Consensus 12 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 87 (677)
.| ++..|+.+++..+..- |. |+++.+..+|++... |++..|...+..-.+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 35 3677777777777653 22 889999999999888 888899988888777663 3445566
Q ss_pred hccCC------CCCcchHHHHHHHHH----hCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHH
Q 037537 88 FDQIP------QPDLVSYNTLISAYA----DCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIY 157 (677)
Q Consensus 88 f~~m~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~ 157 (677)
|+... ..+...|...+..+. .+++.+.+..+|++.... |.. .+..+...+..-..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~----------- 135 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFEL----------- 135 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHH-----------
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHH-----------
Confidence 65533 135577887777654 245678899999998863 321 12222222211100
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C--CCCCeeeHHHHHHHHHhCCC-------chHHHHHHHHHHHCCC
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G--EIKDEVSWNSMVVAYGQHRE-------GLEALQLFQEMVSLQL 227 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~--~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~ 227 (677)
. .+..+...++.-+. +.+..|+.+++.+ . ...+...|...+.---.++. .+.+..+|++++...
T Consensus 136 ~---~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~- 209 (493)
T 2uy1_A 136 E---LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF- 209 (493)
T ss_dssp H---HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred H---hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence 0 00001111111111 1223333333333 0 00122345444443222211 234556777766532
Q ss_pred CCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH-HHHHHhhCC------------
Q 037537 228 GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD-CMKVFEEIP------------ 294 (677)
Q Consensus 228 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~-A~~~f~~~~------------ 294 (677)
+.+...|...+.-+...|+++.|..+++..++. +.+...+. .|+.... .++ ...+.+...
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e-~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD-EEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT-CTHHHHHHHHHTC----------CH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc-hhHHHHHHHHHHHhhccchhhhhcc
Confidence 234555666666666677777777777777776 33333332 2222111 111 111111110
Q ss_pred CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH-H---hhccC-hhHHHHHHHHHHHhhcccCcc
Q 037537 295 QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS-A---CSNLS-PSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 295 ~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a---~~~~~-~~~~~~i~~~~~~~~~~~~~~ 369 (677)
......|-..+....+. +..+.|..+|.+. . .|. .++...+. | ....+ .+.++.++...++.- |+.+
T Consensus 283 ~~~~~lw~~y~~~~~r~-~~~~~AR~i~~~A-~---~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~ 354 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKK-RGLELFRKLFIEL-G---NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDST 354 (493)
T ss_dssp HHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH-T---TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCH
T ss_pred cccHHHHHHHHHHHHHc-CCHHHHHHHHHHh-h---CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCH
Confidence 01123455556555556 6677788888777 2 122 12221111 0 00112 455555555555532 1213
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
..+...++...+.|+.+.|+.+|+++.+ ....|...+.--..+|+.+.+.++++++.
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555655666666666666666532 33445555544445555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=81.86 Aligned_cols=122 Identities=8% Similarity=-0.014 Sum_probs=101.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA 484 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 484 (677)
...+...|++++|++.++..... .|+ ...+..+...|...|++++|.+.|+...+. .| +...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 34455678899999999988663 344 456777888999999999999999999875 55 578899999999999
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 037537 485 GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATI-RRLMRD 548 (677)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 548 (677)
|++++|...|++. ++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRS---------------VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999876 688999999999999999999999887765 466655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=75.30 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=80.2
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHH
Q 037537 432 PPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAA 509 (677)
Q Consensus 432 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (677)
.|+ ...+..+...+.+.|++++|...|+.+.+. .| +...|..+..+|.+.|++++|.+.|++.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a------------ 96 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA------------ 96 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH------------
Confidence 444 345666677778888888888888888764 45 4677888888888888988888888866
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 510 NHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 510 ~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|+++.+|..+..+|...|++++|...|++..+..
T Consensus 97 ---l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 97 ---FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57888888899999999999999999999888887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=87.38 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=85.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-------CC--cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-------HN--TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT-- 434 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-- 434 (677)
...++.+...|.+.|++++|...|++..+ +. ..+|+.+...|.. |++++|+..|++.++..- .+.
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 34556666777777777777666654321 11 2456777777877 888888888888765210 111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMF---GFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..++..+...+...|++++|...|+...+.. +..+. ...+..++..+...|++++|...+++.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567777888888899999998888887642 11111 235666677777889999999988875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.4e-06 Score=76.61 Aligned_cols=160 Identities=8% Similarity=0.002 Sum_probs=132.4
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-CCcchHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-HNTVSLNSMIAGYAQHG----IGMEALRLFEWMLETNIPPTNITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 443 (677)
+..+..|..+|...+++++|...|++..+ .++..+..|...|.. + +.++|++.|++..+.| +..++..+-.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 66778888999999999999999998765 466788888888887 6 8999999999998865 5667777777
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhh----cCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 444 ACAH----TGKVAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGR----AGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 444 a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
.+.. .+++++|..+|+...+. .|+ ...+..|..+|.. .+++++|.++|++..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-------------- 156 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS-------------- 156 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--------------
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--------------
Confidence 7877 88999999999999864 343 6778888888888 889999999998763
Q ss_pred hccCCCCchhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 037537 513 LQLEPSNAVPYVMLANIYAAS-G-----KWEEVATIRRLMRDRGV 551 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g~ 551 (677)
++ |.++.++..|..+|... | ++++|...+++..+.|.
T Consensus 157 -~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 -SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp -HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred -Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 33 45667899999999864 3 89999999999988774
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-06 Score=70.99 Aligned_cols=119 Identities=12% Similarity=0.003 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMI 478 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 478 (677)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45578888899999999999999999998853 345778888888999999999999999999875 223577888899
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
.+|.+.|++++|.+.+++. ++++|.+...+..+..+|...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKA---------------LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHH---------------HHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999876 46677888888888888877664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=93.15 Aligned_cols=147 Identities=9% Similarity=0.017 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCc-chHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHH
Q 037537 313 EYSDQALGCFKKLNRVGYHPDD-CSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARR 390 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 390 (677)
|++++|++.|++..+. .|+. ..+..+-..+...+ .+.+...+...++. .|+....+..+...|.+.|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 7789999999988764 4553 45555666677788 99999998888775 44547889999999999999999999
Q ss_pred HHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHhHHh
Q 037537 391 LFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT---GKVAEGQKYFSMMKDM 464 (677)
Q Consensus 391 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~ 464 (677)
.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+... |+.++|.+.++...+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998754 456789999999999999999999999999853 34577888889999999 9999999999999876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.7e-06 Score=70.71 Aligned_cols=120 Identities=16% Similarity=0.070 Sum_probs=97.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMI 478 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 478 (677)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 34567778888888999999999999988753 445777888888888999999999999998875 223467788888
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKW 536 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~ 536 (677)
..|.+.|++++|.+.+++. +++.|.++..+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKA---------------LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHH---------------HhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999998876 466788888899999888888775
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-06 Score=75.52 Aligned_cols=97 Identities=9% Similarity=0.005 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL 513 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 513 (677)
...+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|.+.+++. +
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l 82 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG---------------A 82 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------H
Confidence 445666667777888888888888887764 34 5667777888888888888888888765 5
Q ss_pred ccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 514 QLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 514 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888887653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=6.8e-07 Score=82.29 Aligned_cols=161 Identities=10% Similarity=-0.040 Sum_probs=110.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------------
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN------------- 435 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------------- 435 (677)
.+..+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++.. +.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHH
Confidence 34455556667788888888775443 244568888889999999999999999999843 1122
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 436 ---ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 436 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
..+..+..++...|++++|...++...+. -+.+...+..+..+|.+.|++++|.+.|++.
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a--------------- 148 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA--------------- 148 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHH---------------
Confidence 67888888899999999999999999875 2335778889999999999999999999876
Q ss_pred hccCCCCchhHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 037537 513 LQLEPSNAVPYVMLANIYAASGKWEEVA-TIRRLMRDRG 550 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~~g 550 (677)
++++|.++..+..+..++...|+.+++. ..++.|-..|
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5778999999999999999888888776 5555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=78.83 Aligned_cols=166 Identities=8% Similarity=-0.083 Sum_probs=120.8
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCC-----Cc---c-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEH-----NT---V-SLNSMIAGYAQHGIGMEALRLFEWMLETNIP-PT----NITFV 439 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~-----~~---~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~ 439 (677)
..+..+.+.|++++|...++...+. +. . .+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999886542 11 1 2334666677788999999999999984322 23 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc----CCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDMF----GFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
.+...+...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++... .... ..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~--------~~~~-~~ 230 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--------ISCR-IN 230 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHH-TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHH-cC
Confidence 89999999999999999999988532 11222 34788899999999999999999987520 0000 01
Q ss_pred cCCCCchhHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 037537 515 LEPSNAVPYVMLANIYAASGK-WEEVATIRRLMRD 548 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~-~~~a~~~~~~m~~ 548 (677)
..+.-+.+|..++.+|...|+ +++|.+.+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 112225689999999999995 6999998887753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-06 Score=84.06 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=117.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT--NITF 438 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~ 438 (677)
+.....|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445566777888888777765532 11 34788889999999999999999998765311 222 3567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+...+.. |++++|...|+...+.+.-.. ...++..+...|.+.|++++|.+.+++.. +
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------~ 183 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK---------------S 183 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------H
Confidence 788888888 999999999999886521111 14678888999999999999999998762 2
Q ss_pred cCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 515 LEPSN------AVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 515 l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+.|.+ ...+..++.+|...|++++|...+++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 21211 2367778888899999999999999876
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-06 Score=83.97 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=115.2
Q ss_pred CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHH
Q 037537 384 NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----------------NITFVSVLSA 444 (677)
Q Consensus 384 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a 444 (677)
++++|...|+...+ .+...|..+...|.+.|++++|+..|++.++. .|+ ..++..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444332 23456788888899999999999999998884 344 3788888899
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+...|++++|...++.+.+. .| +...|..+..+|.+.|++++|.+.|++. ++++|.+..++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~ 267 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKV---------------LQLYPNNKAAK 267 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCSSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHHCCCCHHHH
Confidence 99999999999999999875 44 5778889999999999999999999876 68889999999
Q ss_pred HHHHHHHHhcCChHHH-HHHHHHHH
Q 037537 524 VMLANIYAASGKWEEV-ATIRRLMR 547 (677)
Q Consensus 524 ~~l~~~y~~~g~~~~a-~~~~~~m~ 547 (677)
..+..+|...|++++| ..+++.|.
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 44566553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.7e-06 Score=70.12 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=89.1
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHH
Q 037537 431 IPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKA 508 (677)
Q Consensus 431 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (677)
+.|+ ...+......+.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|++.+++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------- 73 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTC----------- 73 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH-----------
Confidence 4555 356777888999999999999999999875 45 5788999999999999999999999876
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 509 ANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 509 ~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 74 ----l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 74 ----IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp ----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999998764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=78.54 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHHccCChHHHHHHHhhccc--c-ChhHHHH----------------HHHHHHhcCChhHHHHHhccCCC--C-CcchH
Q 037537 42 LLYSKCGCLSAAHHAFNQTQH--A-NVFSFNV----------------LLAAYARQLRIASARQLFDQIPQ--P-DLVSY 99 (677)
Q Consensus 42 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~ 99 (677)
..+...|++++|...|++... | ++..+.. +...|.+.|++++|...|+...+ | +...|
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 91 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCL 91 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 334455566666666655554 1 1222333 77777788888888888877653 3 56677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-
Q 037537 100 NTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG- 178 (677)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g- 178 (677)
..+...|...|++++|+..|++..+. .|+ +..++..+...|...|
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~--~P~--------------------------------~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQL--EAD--------------------------------NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCC--------------------------------CHHHHHHHHHHHHHHhH
Confidence 78888888888888888888887764 233 2333344444444333
Q ss_pred -ChhHHHHHHhhcCCCCCee--eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 037537 179 -FLDEAKRVFYEMGEIKDEV--SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY 232 (677)
Q Consensus 179 -~~~~A~~~f~~m~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 232 (677)
..+.+...+... ..|+.. .|..+..++...|++++|+..|++..+ +.|+..
T Consensus 138 ~~~~~~~~~~~~~-~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 234555666665 444332 233344455566778888888877766 445543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-06 Score=76.51 Aligned_cols=167 Identities=12% Similarity=0.059 Sum_probs=109.6
Q ss_pred hhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCH
Q 037537 306 SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNL 385 (677)
Q Consensus 306 ~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 385 (677)
..+.+. |++++|+..|++.... .|+........ ..... .. .. ....+.+...|.+.|++
T Consensus 12 ~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~-~~---------------~~-~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 12 SAAIEA-GQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKN-SE---------------IS-SKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTT-SH---------------HH-HHHHHHHHHHHHHTTCH
T ss_pred HHHHHC-CCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcch-hh---------------hh-HHHHHHHHHHHHHCCCH
Confidence 344556 8888888888887764 34432111000 00000 00 00 23345588899999999
Q ss_pred HHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHH
Q 037537 386 EDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK--VAEGQKYFSM 460 (677)
Q Consensus 386 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~ 460 (677)
++|...|++..+ .+...|..+...|...|++++|+..|++.++.. +.+..++..+...+...|. .+.+...++.
T Consensus 71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998764 366789999999999999999999999999853 3346778888777765554 3444555554
Q ss_pred hHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 461 MKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 461 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.. ...|....+..+..++...|++++|...|++.
T Consensus 150 ~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 150 LS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred Hh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 43 22333333444555667789999999999976
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.3e-06 Score=76.25 Aligned_cols=158 Identities=14% Similarity=0.041 Sum_probs=115.0
Q ss_pred HccCCHHHHHH---HHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCH
Q 037537 380 SKCGNLEDARR---LFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLE----TNIPPT-NITFVSVLSACAHTGKV 451 (677)
Q Consensus 380 ~k~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~ 451 (677)
...|++++|.+ .+..-+......+..+...|...|++++|+..|++..+ .+..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35789999999 66554444567889999999999999999999999876 222222 45677788889999999
Q ss_pred HHHHHHHHHhHHhcCCcc-C----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC--CCchhHH
Q 037537 452 AEGQKYFSMMKDMFGFEP-E----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP--SNAVPYV 524 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p--~~~~~~~ 524 (677)
++|...++...+...-.+ + ...+..+...+...|++++|.+.+++... ..-+... ....++.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV-----------YAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------HHHhccchHHHHHHHH
Confidence 999999998876522222 2 34577888999999999999999987521 0000000 0123468
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 037537 525 MLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..+|...|++++|.+.+++..+
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 899999999999999999988765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=75.59 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=59.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hH
Q 037537 412 QHGIGMEALRLFEWMLETNIPPTN-ITF-----------------VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GE 472 (677)
Q Consensus 412 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~-----------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 472 (677)
..|+.++|+..|++.++. .|+. .+. ..+...+...|++++|...|+.+.+.+.-.|. ..
T Consensus 108 ~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 356677777777777763 3442 121 23445677899999999999999876222221 35
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+..+..+|.+.|+.++|.+.++.+
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6788899999999999999999876
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.4e-06 Score=75.09 Aligned_cols=121 Identities=11% Similarity=0.159 Sum_probs=96.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH-HhhcCCh-
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL-LGRAGKL- 487 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 487 (677)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+. .| +...+..+..+ |.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888999999888753 445678888888899999999999999998865 34 56677778888 7788998
Q ss_pred -HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 488 -TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 488 -~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++|.+.+++. ++++|.++..|..++.+|...|++++|...+++..+..
T Consensus 97 ~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKA---------------LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999998876 56788888999999999999999999999999987753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00013 Score=71.43 Aligned_cols=210 Identities=11% Similarity=0.098 Sum_probs=155.0
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHhhhcccCC--CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHH
Q 037537 283 MRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEE--YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHA 357 (677)
Q Consensus 283 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~ 357 (677)
.++|.++++.+.. .+...||.--..+... + +++++++++..+... .|...+.
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l-~~~~~~eeL~~~~~~L~~--nPk~y~a-------------------- 105 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNL-PNRNLYDELDWCEEIALD--NEKNYQI-------------------- 105 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHH--CTTCCHH--------------------
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHH--CcccHHH--------------------
Confidence 5677777776642 3445677766666666 6 899999999998874 4554432
Q ss_pred HHHHhhcccCccchhHHHHHHH----Hcc---CCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChH--HHHHHHHH
Q 037537 358 LTIKIEIRSNRISVNNALVAMY----SKC---GNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGM--EALRLFEW 425 (677)
Q Consensus 358 ~~~~~~~~~~~~~~~~~li~~y----~k~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~ 425 (677)
++.-...+ .+. ++++++..+++.+.+ +|..+|+--.-.+.+.|.++ ++++.+++
T Consensus 106 --------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 106 --------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp --------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 22111111 233 678899999988865 56778888888888889888 99999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHH-HHHHHHhC
Q 037537 426 MLETNIPPTNITFVSVLSACAHTGK------VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTD-AERLIEAM 497 (677)
Q Consensus 426 m~~~g~~p~~~t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m 497 (677)
+++.. +-|...|+.-.....+.+. ++++.++++.+... .| |...|+-+-.++.+.|+..+ +.++.++.
T Consensus 172 ~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 172 VIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99975 4456677766666666666 89999999998875 44 67778888888888887444 55566665
Q ss_pred CCCCChHHHHHHHHHhccC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 498 PFNPGSIALKAANHFLQLE---PSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 498 ~~~~~~~~~~~~~~l~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
. +++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 248 ~---------------~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 248 V---------------DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp E---------------EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H---------------hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 2 333 77889999999999999999999999999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-05 Score=75.61 Aligned_cols=170 Identities=7% Similarity=-0.105 Sum_probs=122.0
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--C-Cc------chHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--H
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--H-NT------VSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT--N 435 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~ 435 (677)
..+...+..|...|++++|.+.+....+ + +. ..+..+...+...|++++|+..|++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445677888999999999998875432 1 11 2234456667788999999999999986421 122 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHH
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAAN 510 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 510 (677)
.+++.+...+...|++++|..+|+.+.+.....|+ ..++..+...|.+.|++++|.+.+++... ...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~--------~~~ 227 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--------ISC 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH--------HHH
Confidence 47888899999999999999999998843222232 25788899999999999999999987621 000
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 037537 511 HFLQLEPSNAVPYVMLANIYAASGKWEEV-ATIRRLMRD 548 (677)
Q Consensus 511 ~l~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 548 (677)
. ....+.-..+|..++.+|...|++++| ...+++...
T Consensus 228 ~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 R-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp H-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred h-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0 001111256789999999999999999 776776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-06 Score=83.14 Aligned_cols=191 Identities=11% Similarity=0.027 Sum_probs=127.3
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
...+..+...+.+. |++++|+..|.+.... .|+. ...+..+..
T Consensus 4 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la~ 46 (281)
T 2c2l_A 4 AQELKEQGNRLFVG-RKYPEAAACYGRAITR--NPLV----------------------------------AVYYTNRAL 46 (281)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCcc----------------------------------HHHHHHHHH
Confidence 34566666777777 8888898888888764 3432 556678888
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 453 (677)
.|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|++..+. .|+. ..+...+..... ..+
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~ 121 (281)
T 2c2l_A 47 CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAK 121 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHH
Confidence 88899999999999988765 35567888889999999999999999988773 2321 111111111111 111
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
+... ...... ...++......+...+ .|+.++|.+.+++. ++++|++......+...+.+.
T Consensus 122 ~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 122 KKRW-NSIEER-RIHQESELHSYLTRLI--AAERERELEECQRN---------------HEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGG---------------GTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhh---------------hccccchhhhhhHHHHHHHHH
Confidence 1121 222222 3445555555554433 68888888877765 466777777777777777776
Q ss_pred -CChHHHHHHHHHHHhC
Q 037537 534 -GKWEEVATIRRLMRDR 549 (677)
Q Consensus 534 -g~~~~a~~~~~~m~~~ 549 (677)
+++++|.++|.+..+.
T Consensus 183 ~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 183 DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 7799999999987653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-05 Score=67.61 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|...+++. ++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~ 80 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYG---------------AL 80 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hh
Confidence 34555566677788888888888877764 34 5667777788888888888888888765 56
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77888888888888888888888888888877653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=70.22 Aligned_cols=119 Identities=10% Similarity=0.071 Sum_probs=88.0
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
+.+.+.+.+...+.++++.++ ...+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcc
Confidence 345555555544443333211 11245577788888899999999999999998853 3457788888888899999
Q ss_pred HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 451 VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++|...|+...+. .| +...|..+..+|.+.|++++|.+.|++.
T Consensus 86 ~~~Ai~~~~~al~l---~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 86 FQQAADLYAVAFAL---GKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998865 45 4677888889999999999999998876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.2e-05 Score=63.37 Aligned_cols=112 Identities=19% Similarity=0.142 Sum_probs=87.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3456777888888999999999999988753 345677888888888899999999999988865 2234677888888
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
+|.+.|++++|.+.+++. ++++|.++..+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEG---------------LKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHh
Confidence 999999999999988876 45667776666665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7.5e-06 Score=71.15 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=75.9
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCM 477 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 477 (677)
+...+..+...+.+.|++++|+..|++.+... +.+...+..+..++...|++++|...|+...+. .| +...+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHH
Confidence 44567777888888899999999998888753 445777888888888889999999999888864 44 46777888
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 037537 478 IDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m 497 (677)
..+|...|++++|.+.|++.
T Consensus 96 g~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88888999999999888765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00011 Score=68.14 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=105.3
Q ss_pred chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcccCC---CHHHHHHHHHHHhhcCCCCCcchHHHH
Q 037537 265 NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQKEE---YSDQALGCFKKLNRVGYHPDDCSFVCV 340 (677)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~~~---~~~~A~~l~~~m~~~g~~p~~~t~~~l 340 (677)
+......|-.+|...++ .++|.+.|++..+ .+..++..|-..|... | ++++|+.+|++..+.|.
T Consensus 17 ~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~-g~~~~~~~A~~~~~~A~~~g~---------- 84 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGD-YQKAEYWAQKAAAQGDGDALALLAQLKIRN-PQQADYPQARQLAEKAVEAGS---------- 84 (212)
T ss_dssp CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCHHHHHHHHHHTTSS-TTSCCHHHHHHHHHHHHHTTC----------
T ss_pred CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHCCC----------
Confidence 44445555555555555 6666666665442 3344555555555542 2 77888888888765431
Q ss_pred HHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCCHHHHHHHHhcCCCCC-----cchHHHHHHHHH
Q 037537 341 ISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGNLEDARRLFDRMPEHN-----TVSLNSMIAGYA 411 (677)
Q Consensus 341 l~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~ 411 (677)
+..+..|..+|.. .+++++|...|++..+.+ +.++..|...|.
T Consensus 85 ----------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 85 ----------------------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp ----------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 4445566666666 778888888888877633 577888888888
Q ss_pred H----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHhHHhcCC
Q 037537 412 Q----HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT-G-----KVAEGQKYFSMMKDMFGF 467 (677)
Q Consensus 412 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~~~~~ 467 (677)
. .++.++|+..|++..+. .++...+..+-..+... | +.++|...|+...+. |.
T Consensus 137 ~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~-g~ 199 (212)
T 3rjv_A 137 SGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE-GF 199 (212)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH-TC
T ss_pred cCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc-CC
Confidence 8 77889999999998885 23444566666666432 2 788888888888776 54
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-05 Score=70.35 Aligned_cols=125 Identities=12% Similarity=0.062 Sum_probs=102.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45667888889999999999999997653 467789999999999999999999999999854 44577888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHH--HHHHHHHhhcCChHHHHHHHHhC
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHY--SCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~--~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...|++++|...|+.+.+. .| +...+ ..+...+.+.|++++|.+.+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999999999875 33 33344 44455577889999999998764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-05 Score=75.52 Aligned_cols=167 Identities=11% Similarity=0.000 Sum_probs=119.9
Q ss_pred hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHH
Q 037537 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMY 379 (677)
Q Consensus 300 ~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y 379 (677)
.+...+..+... |++++|++.+.+..+.. |........ ...+..+...|
T Consensus 77 ~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~--~~~~~~~~~----------------------------~~~~~~~~~~~ 125 (293)
T 2qfc_A 77 QFKDQVIMLCKQ-KRYKEIYNKVWNELKKE--EYHPEFQQF----------------------------LQWQYYVAAYV 125 (293)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTC--CCCHHHHHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHhccc--cCChhHHHH----------------------------HHHHHHHHHHH
Confidence 344456667777 89999999998877642 221111000 22334566778
Q ss_pred HccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHH
Q 037537 380 SKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLET-NIPPT-----NITFVSVLSA 444 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~a 444 (677)
...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 889999999998876532 12 347889999999999999999999998731 01222 2578888899
Q ss_pred HhccCCHHHHHHHHHHhHHhc---CCcc-ChHHHHHHHHHHhhcCChHHH-HHHHHhC
Q 037537 445 CAHTGKVAEGQKYFSMMKDMF---GFEP-EGEHYSCMIDLLGRAGKLTDA-ERLIEAM 497 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m 497 (677)
|...|++++|..+++...+.. +... -...|..+...|.+.|+.++| ...+++.
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999999999999887541 1111 156788899999999999999 7777764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=76.12 Aligned_cols=125 Identities=13% Similarity=0.022 Sum_probs=97.4
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACA 446 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~ 446 (677)
+.-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 445677888899999999999999875 433366666778899999999999998654421 111 236778888999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..|++++|+..|++.... ...|. .........++.+.|+.++|...|+++
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998753 32253 446667778899999999999999987
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-05 Score=65.73 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+......+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------l~ 66 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA---------------IE 66 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HH
Confidence 34555556666777777777777777654 33 4566777777777888888887777765 46
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 67777778888888888888888888888776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.08 E-value=9.1e-05 Score=72.66 Aligned_cols=163 Identities=11% Similarity=0.002 Sum_probs=118.4
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
.+..+... |++++|..++++..+. .+........ ...+..+...|...|
T Consensus 81 ~i~~~~~~-~~y~~a~~~~~~~l~~--~~~~~~~~~~----------------------------~~~~~~l~~~~~~~~ 129 (293)
T 3u3w_A 81 QVIMLCKQ-KRYKEIYNKVWNELKK--EEYHPEFQQF----------------------------LQWQYYVAAYVLKKV 129 (293)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTT--CCCCHHHHHH----------------------------HHHHHHHHHHHTTSS
T ss_pred HHHHHHHH-hhHHHHHHHHHHHhcc--ccCChHHHHH----------------------------HHHHHHHHHHHHccc
Confidence 35667777 9999999999998763 2221111000 223455677778888
Q ss_pred CHHHHHHHHhcCCC-----CCc----chHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHhcc
Q 037537 384 NLEDARRLFDRMPE-----HNT----VSLNSMIAGYAQHGIGMEALRLFEWMLE----T-NIPPT-NITFVSVLSACAHT 448 (677)
Q Consensus 384 ~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~t~~~ll~a~~~~ 448 (677)
++++|...|++..+ ++. .+|+.+...|...|++++|+..|+++.+ . +..|. ..++..+...|...
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 99999998886542 232 2689999999999999999999999884 1 22222 24788888999999
Q ss_pred CCHHHHHHHHHHhHHhc---CCccC-hHHHHHHHHHHhhcCC-hHHHHHHHHhC
Q 037537 449 GKVAEGQKYFSMMKDMF---GFEPE-GEHYSCMIDLLGRAGK-LTDAERLIEAM 497 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m 497 (677)
|++++|..+++...+.. +..+. ...|..+..+|.+.|+ +++|.+.+++.
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999887531 22222 5688889999999995 69999988765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-05 Score=62.68 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
...+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------~~ 68 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYV---------------IN 68 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HH
Confidence 344555566666777777777777776654 1224556677777777788888887777765 35
Q ss_pred cCCC--CchhHHHHHHHHHhc-CChHHHHHHHHHHHhCC
Q 037537 515 LEPS--NAVPYVMLANIYAAS-GKWEEVATIRRLMRDRG 550 (677)
Q Consensus 515 l~p~--~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g 550 (677)
+.|. +...|..++.+|... |++++|.+.+++..+..
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 5666 777788888888888 88888888887776543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.2e-05 Score=64.77 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEH 473 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 473 (677)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++...+. .| +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 4567888888899999999999999999874 566 567778888888999999999999988865 34 5677
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
+..+..+|.+.|++++|.+.+++. ++++|++...+..+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRC---------------VSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH---------------HHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH---------------HHcCCCcHHHHHHHHHHHh
Confidence 888888999999999999998876 4667777776666655543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=63.45 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=91.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45677888899999999999999988753 356788999999999999999999999999864 45677888999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA 484 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 484 (677)
...|++++|...++.+.+. .| +...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhc
Confidence 9999999999999999875 34 455566665555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=84.75 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=95.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcC
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAG 485 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 485 (677)
...+.+.|++++|++.|++.++.. +.+..++..+..++...|++++|...+++..+. .| +...|..+..+|.+.|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 344567889999999999998853 334778888889999999999999999998864 45 4778888999999999
Q ss_pred ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH--HHhcCChHHHHHHHHH
Q 037537 486 KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI--YAASGKWEEVATIRRL 545 (677)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 545 (677)
++++|.+.+++. ++++|++...+..+..+ +.+.|++++|.+.+++
T Consensus 89 ~~~eA~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHH---------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999876 57788888888888888 8888999999998874
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.7e-05 Score=64.68 Aligned_cols=100 Identities=9% Similarity=-0.045 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
.+...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--------------- 69 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRA--------------- 69 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 34667777777788888888888888887764 1224677788888888888888888888765
Q ss_pred hccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 513 LQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677888888888999999999999998888887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-05 Score=66.85 Aligned_cols=94 Identities=15% Similarity=0.037 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|+...+. .| +...+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHH
Confidence 3456667778888899999999999888753 445677788888888899999999999988865 34 466777888
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 037537 479 DLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m 497 (677)
.+|...|++++|.+.|++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8889999999999988866
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00049 Score=67.26 Aligned_cols=211 Identities=8% Similarity=0.004 Sum_probs=130.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC--ChHHHHHHHhhccc---cChhHHHHHHHHH----Hhc---CC
Q 037537 13 RDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCG--CLSAAHHAFNQTQH---ANVFSFNVLLAAY----ARQ---LR 80 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 80 (677)
...++|+.+.+.++..+ |-+..+++.--..+...| +++++.+.++.+.. .+..+|+.--..+ .+. ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34467888888888887 666677787777777777 88888888888887 3444566544444 444 67
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhCCChh--HHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHH
Q 037537 81 IASARQLFDQIPQ---PDLVSYNTLISAYADCGDTE--SALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLA 155 (677)
Q Consensus 81 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~ 155 (677)
+++++.+++.+.+ .|-.+|+.-.-.+.+.|.++ ++++.++++.+.. |
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~-------------------------- 177 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--L-------------------------- 177 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--T--------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--C--------------------------
Confidence 8888888888764 45667777666777778777 8888888888653 2
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCC------hhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchH-HHHHHHHHHHCC
Q 037537 156 IYCGFDHYASVNNSLLTCYSRNGF------LDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLE-ALQLFQEMVSLQ 226 (677)
Q Consensus 156 ~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g 226 (677)
.|-..|+.--..+.+.|. ++++.+.++++ ....|...|+-+-..+.+.|+..+ +.++..+..+.+
T Consensus 178 ------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 178 ------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp ------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred ------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 222333333333333333 56666666554 133456667777777777666444 334444443322
Q ss_pred --CCCCHhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 227 --LGLDMYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 227 --~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
-..+...+..+...+.+.|+.++|.++++.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 11244455555555555555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.1e-05 Score=63.04 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL 480 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 480 (677)
.|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++...+. .| +...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 46667777888888888888888888753 345677888888888888888888888888764 44 46677788888
Q ss_pred HhhcCChHHHHHHHHhC
Q 037537 481 LGRAGKLTDAERLIEAM 497 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m 497 (677)
|...|++++|.+.+++.
T Consensus 82 ~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 QIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 88888888888888765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-05 Score=72.89 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=99.4
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
....+... |++++|.++|..+...+ |+. + ....+...+.+.+
T Consensus 108 yA~~L~~~-g~y~eA~~~l~~~~~~~--p~~----------------------------------~-~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 108 FAACEAAQ-GNYADAMEALEAAPVAG--SEH----------------------------------L-VAWMKAVVYGAAE 149 (282)
T ss_dssp HHHHHHHH-TCHHHHHHHHTSSCCTT--CHH----------------------------------H-HHHHHHHHHHHTT
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHhcC--Cch----------------------------------H-HHHHHHHHHHHcC
Confidence 45566677 89999999998876532 432 2 3345556888999
Q ss_pred CHHHHHHHHhcCCCC-C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHH
Q 037537 384 NLEDARRLFDRMPEH-N----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 384 ~~~~A~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
++++|+..|+...+. + ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..
T Consensus 150 r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999876542 2 23677788999999999999999999986443264 3356667778889999999999
Q ss_pred HHHHhHHhcCCccChHHHHHH
Q 037537 457 YFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~l 477 (677)
.|+.+... .|+...+..|
T Consensus 230 ~l~~a~a~---~P~~~~~~aL 247 (282)
T 4f3v_A 230 LLEWLQTT---HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHH---SCCHHHHHHH
T ss_pred HHHHHHhc---CCcHHHHHHH
Confidence 99999875 5664444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=6e-05 Score=66.58 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCM 477 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 477 (677)
+...|..+...+.+.|++++|++.|++.++.. +.+...+..+..++...|++++|...|+...+. .| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34567788888999999999999999998853 335778888888999999999999999999875 45 47788889
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
..+|.+.|++++|.+.|++. ++++|++...|....
T Consensus 86 g~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG---------------IEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---------------HHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH---------------HHhCCCchHHHHHHH
Confidence 99999999999999999876 577788877655443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-05 Score=70.73 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=88.3
Q ss_pred HccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCH--HH
Q 037537 380 SKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA-CAHTGKV--AE 453 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~--~~ 453 (677)
...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 346777778777776542 456788999999999999999999999998853 3356677777777 7788998 99
Q ss_pred HHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 454 GQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|...++.+.+. .| +...+..+...|.+.|++++|.+.+++.
T Consensus 100 A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 100 TRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999875 44 4677888889999999999999999876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4e-05 Score=67.74 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 434 TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 434 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
+...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--------------- 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELA--------------- 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------
Confidence 3557788888899999999999999999875 45 6788999999999999999999999876
Q ss_pred hccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 513 LQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|.++..|..+..+|...|++++|.+.+++..+.
T Consensus 72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999998764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-05 Score=64.21 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=63.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
..+...+...|++++|...|+...+. .| +...|..+..++.+.|++++|...+++. ++++|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~P 82 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHA---------------RMLDP 82 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCC
Confidence 34445556667777777777776654 34 4566666777777777777777777654 46677
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+++..|..|..+|...|++++|...+++..+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=8e-05 Score=60.92 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
...+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------~~ 66 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT---------------VD 66 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHH---------------HH
Confidence 456777788889999999999999999875 2236778888999999999999999999876 46
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+.|.++..|..++.+|...|++++|.+.+++..+.
T Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 77888999999999999999999999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-05 Score=80.02 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=94.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
+..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++.++.. +.+..++..+..++...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34445567789999999999998754 457789999999999999999999999999953 33477888999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH--HhhcCChHHHHHHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL--LGRAGKLTDAERLIE 495 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 495 (677)
|++++|.+.|++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999875 34 34455555555 888999999999998
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.9e-05 Score=59.72 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=60.9
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc---ChHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP---EGEHYS 475 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~ 475 (677)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. .| +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHH
Confidence 34455566666666677777777777666643 334556666666666777777777777766653 23 355666
Q ss_pred HHHHHHhhc-CChHHHHHHHHhC
Q 037537 476 CMIDLLGRA-GKLTDAERLIEAM 497 (677)
Q Consensus 476 ~li~~~~~~-g~~~~A~~~~~~m 497 (677)
.+..+|.+. |++++|.+.+++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 667777777 7777777777665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=7.5e-05 Score=62.77 Aligned_cols=114 Identities=10% Similarity=-0.009 Sum_probs=94.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 56778888999999999999999998654 356788999999999999999999999999853 44577888889999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCC
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGK 486 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 486 (677)
...|++++|.+.|+...+. .| +...+..+..++.+.|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999865 44 35666677777766553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=8.9e-05 Score=61.92 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=96.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|++.+++..+.. +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 56677888999999999999999998653 466788999999999999999999999999853 44577888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCCh
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 487 (677)
...|++++|...|+...+. .| +...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999875 34 566777788888777764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.7e-05 Score=62.98 Aligned_cols=96 Identities=6% Similarity=-0.064 Sum_probs=75.5
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHH
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSC 476 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 476 (677)
.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|...++...+. .| +...+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHH
Confidence 355677778888888888888888888888753 344677788888888888888888888888765 34 4677888
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 037537 477 MIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m 497 (677)
+..+|.+.|++++|.+.+++.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 888888888888888888765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.89 E-value=6.5e-05 Score=78.85 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----------------NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
...|..+...|.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|...++.+.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 446777888888899999999999988874 333 47788888899999999999999999987
Q ss_pred hcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH-
Q 037537 464 MFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT- 541 (677)
Q Consensus 464 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~- 541 (677)
. .| +...|..+..+|.+.|++++|...|++. ++++|++..+|..+..++...|+++++.+
T Consensus 346 ~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 346 L---DSANEKGLYRRGEAQLLMNEFESAKGDFEKV---------------LEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp H---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---CCccHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 44 5778888999999999999999999876 57889999999999999999999998764
Q ss_pred HHHHHHh
Q 037537 542 IRRLMRD 548 (677)
Q Consensus 542 ~~~~m~~ 548 (677)
+++.|-.
T Consensus 408 ~~~~~f~ 414 (457)
T 1kt0_A 408 IYANMFK 414 (457)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 4555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=8.2e-05 Score=62.22 Aligned_cols=96 Identities=9% Similarity=0.031 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-ccC----hHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGF-EPE----GEHYS 475 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~----~~~~~ 475 (677)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.+...- .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 457778888899999999999999998854 446778888888899999999999999998865111 111 67788
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+..+|.+.|++++|.+.+++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 8999999999999999999876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00013 Score=62.74 Aligned_cols=98 Identities=4% Similarity=-0.061 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHH
Q 037537 434 TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAA 509 (677)
Q Consensus 434 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (677)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|.+.+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------ 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------------ 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH------------
Confidence 466788888899999999999999999985 4676 678888999999999999999999876
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 510 NHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 510 ~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|+++..|..+..+|...|++++|...+++..+.
T Consensus 92 ---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 92 ---IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4667888899999999999999999999999998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=67.21 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=84.3
Q ss_pred CCCHHHHHH---HHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHH
Q 037537 280 SGDMRDCMK---VFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIH 356 (677)
Q Consensus 280 g~~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~ 356 (677)
|+ +++|.+ .+..-+......++.+...+... |++++|+..|++....-...+.
T Consensus 6 g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~---------------------- 61 (203)
T 3gw4_A 6 HD-YALAERQAQALLAHPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGD---------------------- 61 (203)
T ss_dssp -C-HHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCC----------------------
T ss_pred cc-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCC----------------------
Confidence 55 677776 55443334455666677777777 7888888877776542111000
Q ss_pred HHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----C-C----cchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 357 ALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----H-N----TVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
.+....++..+...|...|++++|...|++..+ + + ...+..+...+...|++++|...+++.
T Consensus 62 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 62 --------HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 000044556667777777777777776665432 1 1 223555666666677777777766665
Q ss_pred HHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 427 LETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 427 ~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
.+..- .++ ..++..+...+...|++++|...++...+
T Consensus 134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 53210 111 12344555556666666666666665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=7.6e-05 Score=74.82 Aligned_cols=125 Identities=11% Similarity=0.044 Sum_probs=106.9
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--CC----------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--HN----------------TVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56778889999999999999999987653 33 3789999999999999999999999999854
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHH-HHHHHhC
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDA-ERLIEAM 497 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m 497 (677)
+.+...+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.|+.++| .+++++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999875 45 467888899999999999999 4566665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0024 Score=63.11 Aligned_cols=216 Identities=10% Similarity=0.064 Sum_probs=141.6
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHhhhcccCC-CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHH
Q 037537 283 MRDCMKVFEEIP---QPDLVLWNTMISGYSQKEE-YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHAL 358 (677)
Q Consensus 283 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~ 358 (677)
.++|.++++++. ..+...||.--..+... + .++++++++..+... .|..
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l-~~~l~eEL~~~~~~L~~--nPKn------------------------ 122 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSL-NKSLEDELRLMNEFAVQ--NLKS------------------------ 122 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHT--TCCC------------------------
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHh--CCCc------------------------
Confidence 556666666654 23445677665555555 5 588888888888864 4443
Q ss_pred HHHhhcccCccchhHHHHHHHHcc-C-CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChH--------HHHHHHHH
Q 037537 359 TIKIEIRSNRISVNNALVAMYSKC-G-NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGM--------EALRLFEW 425 (677)
Q Consensus 359 ~~~~~~~~~~~~~~~~li~~y~k~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~ 425 (677)
..+++.-...+.+. + +++++.++++.+.+ +|..+|+--.-.+.+.|..+ ++++.+++
T Consensus 123 ----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 123 ----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp ----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 23333333333333 4 67888888888876 35566776655555556666 99999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCCh----------
Q 037537 426 MLETNIPPTNITFVSVLSACAHTGK-------VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKL---------- 487 (677)
Q Consensus 426 m~~~g~~p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~---------- 487 (677)
+++.. +-|...|+.-...+.+.+. ++++.++++.+... .| |...|+-+-.++.+.|+-
T Consensus 193 ~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 193 MLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 99965 4467778877777777775 78888888888864 45 566677666667666653
Q ss_pred ----------HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 488 ----------TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 488 ----------~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..++..++...... .+.+++.+.++..|+++|...|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLP---------EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GTC--------------CCCCC-CCC---------SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccc---------cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3344444444221100 022356778899999999999999999999999864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.9e-05 Score=64.99 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GE 472 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 472 (677)
++..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666666777777777666654210 011 135666667777788888888888776653211111 44
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..+...+...|++++|.+.+++.... .+. ....+.....+..+..+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAI--------AQE-LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH--------HHH-ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777788888999999999888765200 000 000112245788899999999999999999988764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00039 Score=58.06 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-N---ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHY 474 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~ 474 (677)
+..+...+...|++++|+..|++..+.. |+ . ..+..+..++...|++++|...|+.+.+. .|+ ...+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~ 79 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHH
Confidence 3445566677777788888777777642 33 2 36666667777778888888888777764 233 4556
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+..+|.+.|++++|.+.+++.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777777888888888877765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.77 E-value=9e-05 Score=62.22 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=50.6
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETN--IPPT----NITFVSV 441 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~l 441 (677)
.+..|...|.+.|++++|...|++..+ .+...|+.+..+|...|++++|++.|++.++.. ..++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 445555666666666666666665432 244556666666666666666666666655421 0111 1234444
Q ss_pred HHHHhccCCHHHHHHHHHHhHH
Q 037537 442 LSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~ 463 (677)
..++...|++++|.+.|+...+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666665554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00017 Score=59.88 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMID 479 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 479 (677)
..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+...+. .| +...+..+..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~ 93 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAV 93 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 346666777888888888888888888743 335667777777888888888888888888764 45 4667778888
Q ss_pred HHhhcCChHHHHHHHHhC
Q 037537 480 LLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m 497 (677)
+|.+.|++++|.+.+++.
T Consensus 94 ~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 888888888888888765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00028 Score=62.04 Aligned_cols=64 Identities=22% Similarity=0.167 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 471 GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...|..+..+|.+.|++++|...+++. ++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEV---------------LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHH---------------HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 467888899999999999999999876 6889999999999999999999999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=9.1e-05 Score=74.30 Aligned_cols=127 Identities=7% Similarity=0.010 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI------------------TFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------------------t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
|..+...+.+.|++++|+..|++.++. .|+.. .|..+..++.+.|++++|...++...+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555556666666666665542 33322 6777788888999999999999988865
Q ss_pred cCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH-HhcCChHHHHHH
Q 037537 465 FGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY-AASGKWEEVATI 542 (677)
Q Consensus 465 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y-~~~g~~~~a~~~ 542 (677)
.| +...|..+..+|...|++++|.+.|++. ++++|.++..+..|..+. ...+..+++..+
T Consensus 260 ---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a---------------l~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 260 ---EEKNPKALFRRGKAKAELGQMDSARDDFRKA---------------QKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT---------------TC-----------------------------
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5678888888999999999999999887 366778888888887774 445667777778
Q ss_pred HHHHHhC
Q 037537 543 RRLMRDR 549 (677)
Q Consensus 543 ~~~m~~~ 549 (677)
+++|...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 8777543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00024 Score=59.37 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=78.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-h---HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-G---EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+...+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|.+.+++. ++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~---------------~~ 67 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL---------------VS 67 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH---------------HH
Confidence 34456677899999999999999875 343 2 47778889999999999999999876 46
Q ss_pred cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSN---AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..|++ +.++..++.+|...|++++|...+++..+.
T Consensus 68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777 677999999999999999999999998764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.2e-05 Score=63.89 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHhHHhcCC-cc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGF-EP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
.|++++|...|+...+. +. .| +...+..+..+|.+.|++++|.+.+++. ++++|+++.++..
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~ 66 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG---------------VKQFPNHQALRVF 66 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCchHHHHH
Confidence 34455555555555432 10 12 2344555555566666666666665544 3455555666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 037537 526 LANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
++.+|...|++++|...+++..+
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00029 Score=68.55 Aligned_cols=94 Identities=6% Similarity=-0.068 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
...+..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|...++...+ +.| +...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3456677777888888888888888887742 33566777777777888888888888887764 344 456677777
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 037537 479 DLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m 497 (677)
.+|.+.|++++|.+.|++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888888888888887765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=73.37 Aligned_cols=122 Identities=7% Similarity=0.020 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLET--------------NIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFG 466 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 466 (677)
.|..+...+.+.|++++|++.|++.++. ...| +..+|..+..++.+.|++++|...++...+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 3566667777777777777777777651 0123 3467788888889999999999999998853
Q ss_pred Ccc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH
Q 037537 467 FEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 467 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
.| +...|..+..+|.+.|++++|.+.+++. ++++|++...+..+..++...|+.+++.+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A---------------l~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKA---------------QEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 4678888899999999999999998876 57888888899999999888888777754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00032 Score=58.76 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--------hH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--------GE 472 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~ 472 (677)
..|..+...+.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|...++...+. .|+ ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHH
Confidence 457788899999999999999999999853 334778889999999999999999999998864 332 24
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|..+...|...|++++|.+.|++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777888899999999999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0071 Score=59.75 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCC-ChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcc
Q 037537 69 NVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCG-DTESALSLFKDMREKRFDTDGFTLSGLITASSNN 144 (677)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 144 (677)
+.+.....+....++|+++++.+.. | +..+||.--..+...| .+++++++++.+.... |.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PK-------------- 121 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LK-------------- 121 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CC--------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CC--------------
Confidence 3333344444555677777777654 3 3445666656666666 4788888888777542 22
Q ss_pred hhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-C-ChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCch-------
Q 037537 145 LCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRN-G-FLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGL------- 213 (677)
Q Consensus 145 ~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~------- 213 (677)
+..+|+.--..+.+. + +++++.++++++ ...+|-.+|+.-.-.+.+.|.++
T Consensus 122 ------------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 122 ------------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp ------------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ------------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 233344444444444 4 667777777777 22334555665554544445555
Q ss_pred -HHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCC-------hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCC---
Q 037537 214 -EALQLFQEMVSLQLGLDMYTLASILTAFTSLED-------LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGD--- 282 (677)
Q Consensus 214 -~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~--- 282 (677)
++++.++++.+..+ -|...|+.....+.+.+. ++++.+....++... +.|...|+-+-..+.+.|..
T Consensus 184 ~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 184 GSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccc
Confidence 78888888877543 256666666666666654 566777777777664 56677777766666666552
Q ss_pred ----------------HHHHHHHHhhCCC---------CChhhHHHHHhhhcccCCCHHHHHHHHHHHhh
Q 037537 283 ----------------MRDCMKVFEEIPQ---------PDLVLWNTMISGYSQKEEYSDQALGCFKKLNR 327 (677)
Q Consensus 283 ----------------~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~ 327 (677)
.........++.. +....+..+...|... |+.++|.++++.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~-~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ-NRVDDAAKVFEKLSS 330 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Confidence 2333333333331 4556677788888887 888999999998864
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00031 Score=60.52 Aligned_cols=69 Identities=10% Similarity=-0.014 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY----VMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
..|..+..++.+.|++++|+..+++.. ...++.++++|++...| .....++...|++++|+..|++..
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL--------~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKAL--------HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH--------HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 378888999999999999999998762 22344455699999999 999999999999999999999986
Q ss_pred h
Q 037537 548 D 548 (677)
Q Consensus 548 ~ 548 (677)
+
T Consensus 130 e 130 (159)
T 2hr2_A 130 E 130 (159)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=61.05 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=88.0
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC----HHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI--PPT----NITFV 439 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~ 439 (677)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44567788899999999999999987653 4567888999999999999999999999987531 222 66788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
.+...+...|++++|...|+.+.+. .|+......+..++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 8888999999999999999999875 46666555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.001 Score=68.99 Aligned_cols=208 Identities=8% Similarity=-0.035 Sum_probs=138.6
Q ss_pred cccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHH
Q 037537 309 SQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLED 387 (677)
Q Consensus 309 ~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 387 (677)
.+. |++++|++.|.++.+.......... ..+ ........ ...+..|...|.+.|++++
T Consensus 15 ~~~-~~y~eA~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~------------~~al~~l~~~y~~~~~~~~ 73 (434)
T 4b4t_Q 15 VNE-KQYNEAEQVYLSLLDKDSSQSSAAA--------GASVDDKRRNEQ------------ETSILELGQLYVTMGAKDK 73 (434)
T ss_dssp HHH-TCHHHHHHHHHHHHHSCCCSSSBSS--------SSSBCSHHHHHH------------HHHHHHHHHHHHHHTCHHH
T ss_pred HHC-CCHHHHHHHHHHHHhhCcccchhHH--------HHHHHHHHhhhH------------HHHHHHHHHHHHHCCCHHH
Confidence 345 8999999999998875432221110 000 00000000 2245778899999999999
Q ss_pred HHHHHhcCCC-----CCc----chHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 388 ARRLFDRMPE-----HNT----VSLNSMIAGYAQHGIGMEALRLFEWMLE----TNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 388 A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
|.+.+....+ ++. ...+.+-..+...|+.++|++++++... .+..+. ..++..+...+...|++++
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (434)
T 4b4t_Q 74 LREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKD 153 (434)
T ss_dssp HHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHH
Confidence 9999987753 111 1233333444567889999999988764 333444 4577788889999999999
Q ss_pred HHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc-CCC--CchhHHHH
Q 037537 454 GQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL-EPS--NAVPYVML 526 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l-~p~--~~~~~~~l 526 (677)
|..+++.+.....-.. ....+..++.+|...|++++|..++++.... .... +|+ -...+..+
T Consensus 154 A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 154 SLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA-----------ANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----------hhcCCCchHHHHHHHHHH
Confidence 9999998876432222 2567888999999999999999999875210 0011 111 12457778
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 037537 527 ANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 527 ~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+..|...|++++|...+.+..+
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 8888999999999988877643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00026 Score=61.58 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=99.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT---- 434 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 434 (677)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|++.+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888899999999999999987653 12 14788889999999999999999999875310 112
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMF---GFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..++..+...+...|++++|...++...+.. +..+ ....+..+...|...|++++|.+.+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3467777788889999999999999887542 1111 2456778889999999999999999865
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=62.59 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLET-------NI---------PP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~---------~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.|......+.+.|++++|+..|.+.++. .- .| +...|..+..++...|++++|...++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3455556666666666766666666553 10 12 2356777777888888999998888888864
Q ss_pred cCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 465 FGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 465 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.| +...|..+..+|...|++++|.+.|++.
T Consensus 93 ---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 ---EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp ---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 44 4677888888888899999998888765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.55 E-value=8.7e-05 Score=61.21 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHH
Q 037537 413 HGIGMEALRLFEWMLETNI-PPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 489 (677)
.|++++|+..|++.++.+. .|+ ...+..+...+...|++++|...|+...+. .| +...+..+..+|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4667777777777776431 122 455666666777777777777777777654 33 35566667777777777777
Q ss_pred HHHHHHhC
Q 037537 490 AERLIEAM 497 (677)
Q Consensus 490 A~~~~~~m 497 (677)
|.+.+++.
T Consensus 80 A~~~~~~a 87 (117)
T 3k9i_A 80 GVELLLKI 87 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00042 Score=63.26 Aligned_cols=125 Identities=9% Similarity=0.015 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCc----------------chHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNT----------------VSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
...+..+...|.+.|++++|...|++..+ .+. ..|..+..+|...|++++|+..+++.++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44566778889999999999999987643 233 67888999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHH-HHHHhC
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAE-RLIEAM 497 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~-~~~~~m 497 (677)
. +.+...+..+..++...|++++|...|+...+. .| +...+..+..++.+.|+.+++. ..+..|
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445778889999999999999999999999865 45 4667788888888888777776 445554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00034 Score=72.72 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=129.9
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHccCChHHHHHHHhhccc-----cCh
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSA----------------YLSNHFILLYSKCGCLSAAHHAFNQTQH-----ANV 65 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~ 65 (677)
+.....|++++|.+.+..+++..-.... ..+..+...|...|++++|.+.+..+.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999999986522111 2377889999999999999999988776 121
Q ss_pred ----hHHHHHHHHHHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcc
Q 037537 66 ----FSFNVLLAAYARQLRIASARQLFDQIPQ-----PD----LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGF 132 (677)
Q Consensus 66 ----~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 132 (677)
.+.+.+-..+...|+++.|..++..... .+ ..++..+...|...|++++|..++++....-..++..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233344445567889999888876532 11 2357788999999999999999999876532222211
Q ss_pred cHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc------CCCC-C--eeeHHHHH
Q 037537 133 TLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM------GEIK-D--EVSWNSMV 203 (677)
Q Consensus 133 t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m------~~~~-~--~~~~~~li 203 (677)
.. ...++..++..|...|++++|...+++. ...| . ...+..+.
T Consensus 172 ~~----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 172 PS----------------------------LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp TH----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hh----------------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 11 1234577788899999999999888776 1111 1 23355566
Q ss_pred HHHHhCCCchHHHHHHHHHHH
Q 037537 204 VAYGQHREGLEALQLFQEMVS 224 (677)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~ 224 (677)
..+...|++++|...|.+..+
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 666777888888777766643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00078 Score=70.60 Aligned_cols=133 Identities=14% Similarity=0.017 Sum_probs=99.2
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CccC-hHHHH
Q 037537 409 GYAQHGIGMEALRLFEWMLET---NIPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMF----G-FEPE-GEHYS 475 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~ 475 (677)
.+..+|++++|+.++++.++. -+-|+ ..+++.+..+|...|++++|..++++..+.+ | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887752 12233 3578889999999999999999998876532 2 1233 45788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA---VPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
.|..+|...|++++|+.++++.. .+.++. +.|+++ .....|..++...|++++|..++++++++-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al--------~i~~~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY--------AILLVT--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------HHHHHH--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--------HHHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998762 122222 344444 4456788889999999999999999987543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00089 Score=70.15 Aligned_cols=126 Identities=10% Similarity=0.079 Sum_probs=104.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--C-C---------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--H-N---------------TVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 55677888999999999999999998754 3 2 4789999999999999999999999999854
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHH-HHHhCC
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAER-LIEAMP 498 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 498 (677)
+.+...|..+..++...|++++|...|+.+.+ +.| +...+..+..++.+.|+.++|.+ ++++|-
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999985 456 46788889999999999988874 566663
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.013 Score=57.66 Aligned_cols=162 Identities=13% Similarity=0.033 Sum_probs=109.5
Q ss_pred cchhHHHHHHHHccC--CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCG--NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGI-GMEALRLFEWMLETNIPPTNITFVSVL 442 (677)
Q Consensus 369 ~~~~~~li~~y~k~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 442 (677)
..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. ++++++.++++++.. +-|...|+...
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~ 186 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 555665555566666 48899999988865 567788888777888888 589999999999865 44566666655
Q ss_pred HHHhcc--------------CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc-----------CChHHHHHHHHh
Q 037537 443 SACAHT--------------GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA-----------GKLTDAERLIEA 496 (677)
Q Consensus 443 ~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~ 496 (677)
..+.+. +.++++.+++...... .| |...|+-+--.+.+. +.++++++.++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~- 262 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK- 262 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH-
Confidence 554443 5688899999988865 45 456666555555544 23445555554
Q ss_pred CCCCCChHHHHHHHHHhccCCCCchhHHHHHHH---HHhcCChHHHHHHHHHHHhC
Q 037537 497 MPFNPGSIALKAANHFLQLEPSNAVPYVMLANI---YAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 497 m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~---y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++++|++.-.+..++.. ....|..+++...+.++++.
T Consensus 263 --------------elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 263 --------------ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp --------------HHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred --------------HHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999885444433322 22457778888888888763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=57.53 Aligned_cols=95 Identities=9% Similarity=0.130 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-------hH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-------GE 472 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~ 472 (677)
...|..+...+...|++++|++.|++.++.. +.+...+..+..++...|++++|...++...+ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 4467778888889999999999999988853 44577888888888999999999999998885 4565 44
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
.+..+..++...|+.++|.+.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55666666777777777766666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0019 Score=69.32 Aligned_cols=135 Identities=9% Similarity=0.020 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCC---CCcchHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHH
Q 037537 385 LEDARRLFDRMPE---HNTVSLNSMIAGYAQHG--IGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-KVAEGQKYF 458 (677)
Q Consensus 385 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~ 458 (677)
++++.+.++.+.+ ++..+|+--.-.+.+.| +++++++.++++.+.. +-|..+|+.--..+.+.| .++++.+++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 7888888888764 46678888888888889 6699999999999965 446778888777778888 899999999
Q ss_pred HHhHHhcCCcc-ChHHHHHHHHHHhhc--------------CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 459 SMMKDMFGFEP-EGEHYSCMIDLLGRA--------------GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 459 ~~m~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+.+.+. .| +...|+....++.+. +.+++|.+.+++ +++++|+|..+|
T Consensus 168 ~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~---------------ai~~~P~~~saW 229 (567)
T 1dce_A 168 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN---------------AFFTDPNDQSAW 229 (567)
T ss_dssp HTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH---------------HHHHCSSCSHHH
T ss_pred HHHHHH---CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH---------------HHhhCCCCccHH
Confidence 998864 45 566676666665553 345666666554 478899999999
Q ss_pred HHHHHHHHhcCChHH
Q 037537 524 VMLANIYAASGKWEE 538 (677)
Q Consensus 524 ~~l~~~y~~~g~~~~ 538 (677)
.-+...+.+.|+.++
T Consensus 230 ~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 230 FYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCCSC
T ss_pred HHHHHHHhcCCCccc
Confidence 999999999998665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.028 Score=55.16 Aligned_cols=214 Identities=12% Similarity=0.016 Sum_probs=127.4
Q ss_pred HhcCCChH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC----------hHHHHHHHhhccc---cChhHHHHHHHH
Q 037537 9 CVGRRDLV-TGKSLHALYLKNLVPFSAYLSNHFILLYSKCGC----------LSAAHHAFNQTQH---ANVFSFNVLLAA 74 (677)
Q Consensus 9 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~li~~ 74 (677)
....|.+. +|+.+.+.++..+ |-+..+++.--..+...+. ++++..+++.+.. .+..+|+.-.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445544 6788888888776 4455555554333333332 5667777777666 455677766666
Q ss_pred HHhcC--ChhHHHHHhccCCC---CCcchHHHHHHHHHhCCC-hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhH
Q 037537 75 YARQL--RIASARQLFDQIPQ---PDLVSYNTLISAYADCGD-TESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLI 148 (677)
Q Consensus 75 ~~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 148 (677)
+.+.| .++++..+++.+.+ .|-.+|+.-.-.+.+.|. ++++++.+.++.+.. |.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~------------------ 177 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FS------------------ 177 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SC------------------
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CC------------------
Confidence 66666 37788888887764 466677766666667777 478888888887653 22
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhc--------------CChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhC---
Q 037537 149 KQLHCLAIYCGFDHYASVNNSLLTCYSRN--------------GFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQH--- 209 (677)
Q Consensus 149 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~--- 209 (677)
|...|+..-..+.+. +.++++.+.+++. ..+.|..+|+-+-..+.+.
T Consensus 178 --------------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 178 --------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp --------------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred --------------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 222233222222222 3456777777765 2334666787665555554
Q ss_pred --------CCchHHHHHHHHHHHCCCCCCHhHHHH-----HHHHHccCCChHHHHHHHHHHHHh
Q 037537 210 --------REGLEALQLFQEMVSLQLGLDMYTLAS-----ILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 210 --------g~~~~A~~~~~~m~~~g~~pd~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
+.++++++.++++.+ +.||. .|.. ++.+....+..++....+..+++.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 346788888888887 34553 2321 222223445556666666666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00098 Score=52.92 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+...+..+...|.+.|++++|.+.|++. ++++|+++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEEL---------------VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888999999999999999999876 5888999999999999999999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0008 Score=54.27 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
++...+..+...+...|++++|...|+...+. -+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--------------- 64 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG--------------- 64 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 34567778888899999999999999999875 2235778889999999999999999999876
Q ss_pred hccCCCC------chhHHHHHHHHHhcCChHHHHHHHH
Q 037537 513 LQLEPSN------AVPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 513 ~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
++++|++ ...+..+..++...|++++|.+.++
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4677777 6677777888877777776654443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=66.44 Aligned_cols=121 Identities=10% Similarity=0.038 Sum_probs=99.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-------------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
...+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44567788889999999999999887653 23567889999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHH
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERL 493 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 493 (677)
. +.+...+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.++.+++.+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335778889999999999999999999999875 45 566777788888888887777653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0019 Score=52.58 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=57.4
Q ss_pred HHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
++...|+...+. .| +...+..+...|.+.|++++|.+.+++. ++++|.++.+|..+..+|.
T Consensus 3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAA---------------LDFDPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHHCCCcHHHHHHHHHHHH
Confidence 345556666542 34 4667777778888888888888887765 4667777788888888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 037537 532 ASGKWEEVATIRRLMRD 548 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~ 548 (677)
..|++++|...+++..+
T Consensus 65 ~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 65 GQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0023 Score=49.20 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
..+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|.+.+++. +++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA---------------LEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hhc
Confidence 44555555666666777777776666653 1224556666677777777777777777654 355
Q ss_pred CCCCchhHHHHHHHHHhcC
Q 037537 516 EPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 516 ~p~~~~~~~~l~~~y~~~g 534 (677)
+|.++..+..+..++...|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 6666667776666665443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=56.14 Aligned_cols=94 Identities=17% Similarity=0.067 Sum_probs=61.7
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--CC--------c-----chHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--HN--------T-----VSLNSMIAGYAQHGIGMEALRLFEWMLET----- 429 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~--------~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 429 (677)
..+......+.+.|++++|...|++..+ |+ . ..|+.+..++...|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3445566667778888888888876653 22 1 16777777777888888888777777762
Q ss_pred CCCCC-HHHH----HHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 430 NIPPT-NITF----VSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 430 g~~p~-~~t~----~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
.+.|| ...| .....++...|++++|...|+...+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11454 3455 5666666666777777766666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0031 Score=53.49 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----cCChH
Q 037537 413 HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLT 488 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 488 (677)
.++.++|++.|++..+.| .|+.. +-..+...+.+++|.+.|+...+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999988 45444 666677778899999999999875 356777788888887 89999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037537 489 DAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA----SGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 551 (677)
+|.++|++.... .++.++..|..+|.. .+++++|.+.+++..+.|.
T Consensus 79 ~A~~~~~~Aa~~-----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGL-----------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC-----------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999976321 356789999999999 8999999999999988875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=69.00 Aligned_cols=123 Identities=7% Similarity=-0.018 Sum_probs=81.5
Q ss_pred ccCCCHHHHHHHHHHHhhc---CCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 310 QKEEYSDQALGCFKKLNRV---GYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.. |++++|+.++++.++. -+.|+.... ..+++.|...|...|+++
T Consensus 321 ~q-g~~~eA~~l~~~aL~~~~~~lg~~Hp~~-------------------------------a~~~~nLa~~y~~~g~~~ 368 (490)
T 3n71_A 321 SE-GLYHEVVKLCRECLEKQEPVFADTNLYV-------------------------------LRLLSIASEVLSYLQAYE 368 (490)
T ss_dssp TT-TCHHHHHHHHHHHHHHHTTTBCTTSHHH-------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred hC-CCHHHHHHHHHHHHHHHHHhcCCCCHHH-------------------------------HHHHHHHHHHHHHhcCHH
Confidence 44 8999999998887642 234444333 667788999999999999
Q ss_pred HHHHHHhcCCC----------CC-cchHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHhcc
Q 037537 387 DARRLFDRMPE----------HN-TVSLNSMIAGYAQHGIGMEALRLFEWMLET---NIPPT---N-ITFVSVLSACAHT 448 (677)
Q Consensus 387 ~A~~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~---~-~t~~~ll~a~~~~ 448 (677)
+|..++++..+ |+ ..+++.|...|..+|++++|+.++++.++- -+-|| . .+...+-.+....
T Consensus 369 eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 369 EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 99988876532 22 246777888888888888888888776541 11233 2 2333444455566
Q ss_pred CCHHHHHHHHHHhHHh
Q 037537 449 GKVAEGQKYFSMMKDM 464 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~ 464 (677)
+.+++|+.++..+++.
T Consensus 449 ~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 449 RMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777766654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0031 Score=49.08 Aligned_cols=68 Identities=24% Similarity=0.221 Sum_probs=57.3
Q ss_pred ccChHHHHHHHHHHhhcCC---hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 037537 468 EPEGEHYSCMIDLLGRAGK---LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
.++...+..+..++...++ .++|..++++. ++++|+++.+...+...+.+.|++++|+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A---------------L~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQA---------------LQLEPYNEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------HHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467777778777765544 68888888765 78999999999999999999999999999999
Q ss_pred HHHhCC
Q 037537 545 LMRDRG 550 (677)
Q Consensus 545 ~m~~~g 550 (677)
++.+..
T Consensus 68 ~~l~~~ 73 (93)
T 3bee_A 68 LLLDSN 73 (93)
T ss_dssp HHHTCC
T ss_pred HHHhhC
Confidence 998865
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.004 Score=49.28 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|...|+...+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44566677777777777777777777777643 233556777777777777777777777766643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0023 Score=52.12 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+...|..+...|...|++++|+..|++.++.. +.+...+..+..++...|++++|...|+...+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777888888888888888877743 334567777777777888888888888777654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.005 Score=61.49 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh------------------HHHHHHHHHccCCChHHHHHHHHHHHHh
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY------------------TLASILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~------------------t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
|..+...+.+.|++++|+..|++.... .|+.. .|..+..++.+.|+++.|...+..+++.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555566666666666666665542 23322 6677777888888888888888888876
Q ss_pred CCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc
Q 037537 261 GFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRV 328 (677)
Q Consensus 261 g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~ 328 (677)
. +.+...+..+..+|...|+ +++|...|++..+ | +...+..+.....+..+..+++..+|..|...
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4 4566788888888888888 9999999988764 3 33445444444233325667777888877653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.023 Score=60.98 Aligned_cols=149 Identities=9% Similarity=-0.046 Sum_probs=118.1
Q ss_pred ccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 381 KCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGI----------GMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
+...-++|.+.++.+.+ .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-...+.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33445778888888764 345678877777777777 899999999999864 4457788888888888
Q ss_pred cC--CHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcC-ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 448 TG--KVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAG-KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 448 ~g--~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
.| +++++...++.+.+. .| +...|+.-..++.+.| .++++.+.++++ ++.+|.|..+|
T Consensus 120 l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~---------------I~~~p~n~saW 181 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL---------------ITRNFSNYSSW 181 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT---------------TTTTCCCHHHH
T ss_pred cccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHH---------------HHHCCCCccHH
Confidence 89 779999999999976 44 5667877777888888 899999999988 47788999999
Q ss_pred HHHHHHHHhc--------------CChHHHHHHHHHHHh
Q 037537 524 VMLANIYAAS--------------GKWEEVATIRRLMRD 548 (677)
Q Consensus 524 ~~l~~~y~~~--------------g~~~~a~~~~~~m~~ 548 (677)
.-...++... ++++++++.+++...
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 9988888774 557888888877665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0013 Score=56.52 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChH---HHHHHHHhCCCCCChHHHHHHHHHhccCCCCchh
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLT---DAERLIEAMPFNPGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
+.+.+++|.+.++...+. .| +...|..+..++.+.|+++ +|++.+++. ....+++++++|++..+
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eA--------i~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEA--------ITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH--------HHHHHHHHHHCTTCHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHH--------HHHHHHHHHhCcCcHHH
Confidence 345566677777666654 34 4566666666666655543 222222222 22334458999999999
Q ss_pred HHHHHHHHHhcC-----------ChHHHHHHHHHHHhCC
Q 037537 523 YVMLANIYAASG-----------KWEEVATIRRLMRDRG 550 (677)
Q Consensus 523 ~~~l~~~y~~~g-----------~~~~a~~~~~~m~~~g 550 (677)
|..+.++|...| ++++|++.|++..+..
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 999999999875 8999999999988753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0022 Score=55.03 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=67.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCccC-hHHHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK----------VAEGQKYFSMMKDMFGFEPE-GEHYSCMID 479 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 479 (677)
.+.+++++|++.+++..+.. +.+...|..+-.++...+. +++|+..|++..+. .|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHH
Confidence 44566788888888888753 3456677767666666654 56899999988864 664 678888999
Q ss_pred HHhhcC-----------ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchh
Q 037537 480 LLGRAG-----------KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 480 ~~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
+|...| ++++|.+.|++. ++++|++...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kA---------------l~l~P~~~~y 127 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQA---------------VDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHH---------------HHHCTTCHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHH---------------HHhCCCCHHH
Confidence 988765 788888887765 6888877543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.023 Score=64.19 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=104.9
Q ss_pred HHHhcCChhHHHH-HhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHH
Q 037537 74 AYARQLRIASARQ-LFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLH 152 (677)
Q Consensus 74 ~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~ 152 (677)
.....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+.-.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------------------------- 656 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD----------------------------- 656 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------------------------
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc-----------------------------
Confidence 3445788888888 6655441 1223777777888888888887653211
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 037537 153 CLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY 232 (677)
Q Consensus 153 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 232 (677)
.-...+..+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+..
T Consensus 657 ----------------~~f~~~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------- 709 (814)
T 3mkq_A 657 ----------------QKFELALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------- 709 (814)
T ss_dssp ----------------HHHHHHHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------
T ss_pred ----------------hheehhhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------
Confidence 1123456789999999998887 4567899999999999999999999998754
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 233 TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 233 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
|..+...+...++.+...++-......| -++.-...|.++|+ +++|.+++.++
T Consensus 710 -~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~-~~~a~~~~~~~ 762 (814)
T 3mkq_A 710 -LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGD-IQGAKDLLIKS 762 (814)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred -hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCC-HHHHHHHHHHc
Confidence 3444555555777776666665555554 22444455666777 88888777765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0065 Score=62.60 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=90.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhc--CCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh-c
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMF--GFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL-Q 514 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~-~ 514 (677)
+..+...|++++|..+++...+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ...++++ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L--------~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM--------EPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--------HhHHHHcCC
Confidence 444556778888888888776432 12222 4578889999999999999999998762 1222222 2
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMK 594 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 594 (677)
-.|.-..+++.|..+|...|++++|..++++..+--.+ .-...||...+++..|.+....|+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 23444567889999999999999999999987652110 112459999999888888877775
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.024 Score=43.19 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
...|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+. .| +...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHH
Confidence 3456667777777888888888888877643 334566777777778888888888888877764 34 355555555
Q ss_pred HHHhhc
Q 037537 479 DLLGRA 484 (677)
Q Consensus 479 ~~~~~~ 484 (677)
.++.+.
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0063 Score=62.59 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=81.0
Q ss_pred ccCCHHHHHHHHHHhHHhc--CCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc-cCCCC
Q 037537 447 HTGKVAEGQKYFSMMKDMF--GFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ-LEPSN 519 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~-l~p~~ 519 (677)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. .+.++++. -+|+-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL--------~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII--------KPYSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------HHHHHHcCCCChHH
Confidence 4578899998888776532 12232 4678999999999999999999998762 22222222 23444
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHH
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLE 587 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 587 (677)
..+|+.|..+|...|++++|..++++..+--.+ .-...||...++...|+
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 567999999999999999999999987652111 11245888877666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.09 Score=51.90 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=90.3
Q ss_pred CCcchHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC-----CHHHHHHHHHHhHH
Q 037537 398 HNTVSLNSMIAGYAQ--HGI---GMEALRLFEWMLETNIPPT-NITFVSVLSACAH---TG-----KVAEGQKYFSMMKD 463 (677)
Q Consensus 398 ~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~~ 463 (677)
.+...|...+.+... .+. ..+|..+|++.++ ..|+ ...+..+.-++.. .+ ......+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 467788888776543 333 4789999999998 4677 3444443333321 11 11111222222211
Q ss_pred hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 464 MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
.-....+..+|..+.-.+...|++++|...++++ ++++| +...|..+..++.-.|++++|.+.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rA---------------l~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTG---------------IDLEM-SWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH---------------HhcCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1122456778888877777789999999999977 46665 5678889999999999999999999
Q ss_pred HHHHhCC
Q 037537 544 RLMRDRG 550 (677)
Q Consensus 544 ~~m~~~g 550 (677)
++.....
T Consensus 334 ~~AlrL~ 340 (372)
T 3ly7_A 334 LTAFNLR 340 (372)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 9887654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.099 Score=58.93 Aligned_cols=103 Identities=15% Similarity=0.065 Sum_probs=66.3
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
.....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567899999999987764 456899999999999999999999988743 2333344444566655544
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+-+..... |. ++....+|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-Cc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44433332 21 233344455566666666666555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.02 Score=48.36 Aligned_cols=110 Identities=10% Similarity=-0.010 Sum_probs=93.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-cChhHHHHHHHHHHh----cCChhHHHH
Q 037537 12 RRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-ANVFSFNVLLAAYAR----QLRIASARQ 86 (677)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~ 86 (677)
.++.+.|...+....+.| .++.. |-..|...+.+++|.+.|.+..+ .++..+..|..+|.. .+++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 357889999999999988 33333 77777777889999999998877 788889999999988 899999999
Q ss_pred HhccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHhHhcC
Q 037537 87 LFDQIPQ-PDLVSYNTLISAYAD----CGDTESALSLFKDMREKR 126 (677)
Q Consensus 87 ~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 126 (677)
.|+...+ .+..++..|-..|.. .+++++|+..|++..+.|
T Consensus 83 ~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9988764 577888889999988 899999999999998876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0019 Score=64.97 Aligned_cols=255 Identities=13% Similarity=0.081 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCC
Q 037537 34 AYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYNTLISAYADCGD 111 (677)
Q Consensus 34 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~ 111 (677)
+.+|..|.++..+.+.+.+|...|=+. .|+..|..+|....+.|.+++-.+.+...++ +++..=+.|+-+|++.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 345555555555555554444333211 3444455555555555555555555544433 344444555555555555
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
..+-.+++. .||..-...+=.-|...+. .++.++ .++.-|..|...+.+.|++..|.+.-++
T Consensus 132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKily---------s~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY---------NNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTG---------GGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHH---------HhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444322221 1222222111111111110 000000 0111112233333444444444433332
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCC-CCchhh
Q 037537 190 MGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGF-HQNSHI 268 (677)
Q Consensus 190 m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~ 268 (677)
. .++.+|-.+-.+|...+.+.-|.-.--..+-. || -...++.-|-..|.+++-..+++.-+ |+ .....+
T Consensus 196 A---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGm 265 (624)
T 3lvg_A 196 A---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGM 265 (624)
T ss_dssp C---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHH
T ss_pred c---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHH
Confidence 2 45667777777777777776665443333211 11 12234444566666666666655544 22 345566
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhCC----C-------CChhhHHHHHhhhcccCCCHHHHH
Q 037537 269 GSGLIDLYAKCSGDMRDCMKVFEEIP----Q-------PDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 269 ~~~li~~y~~~g~~~~~A~~~f~~~~----~-------~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
++-|.-.|+|- + .++-++-++... - .....|..++--|++- .+++.|.
T Consensus 266 FTELaILYsKY-~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y-dE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKF-K-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY-EEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSS-C-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH-TCHHHHH
T ss_pred HHHHHHHHHhc-C-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc-hhHHHHH
Confidence 77777777764 2 444444433321 1 2334566666666666 6666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=60.08 Aligned_cols=85 Identities=6% Similarity=-0.011 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHhh---cCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHH
Q 037537 313 EYSDQALGCFKKLNR---VGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDAR 389 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 389 (677)
|++++|+.++++.++ .-+.|+.... ..+++.|...|...|++++|.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-------------------------------a~~~~nLa~~y~~~g~~~eA~ 360 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYM-------------------------------LHMMYQAMGVCLYMQDWEGAL 360 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHH-------------------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHH-------------------------------HHHHHHHHHHHHhhcCHHHHH
Confidence 788899998887764 2244554333 567788888898899998888
Q ss_pred HHHhcCCC----------CC-cchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 390 RLFDRMPE----------HN-TVSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 390 ~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
.++++..+ |+ ..+++.|...|..+|++++|+.+|++.++
T Consensus 361 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 361 KYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 88766432 11 23566666666666666666666666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.018 Score=44.98 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=51.7
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 477 MIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV-PYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
....+.+.|++++|.+.+++. ++.+|.++. .|..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF---------------LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH---------------HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHH---------------HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999876 577888988 99999999999999999999999987653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.093 Score=44.45 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhcCChHHH
Q 037537 416 GMEALRLFEWMLETNIPPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRAGKLTDA 490 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 490 (677)
...+.+-|.+..+.| .++..+-..+..++.+++ ++++|..+++...+. . .| ..+.+-.|.-+|.|.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345666777777766 477777777777888887 777999999999986 3 25 244555566778999999999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 491 ERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
.+.++.. ++++|+|..+..
T Consensus 91 ~~y~~~l---------------L~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGL---------------LQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHH---------------HHHCTTCHHHHH
T ss_pred HHHHHHH---------------HhcCCCCHHHHH
Confidence 9999976 688887765433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.088 Score=54.09 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=72.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CccC-hH
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETN---IPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMF----G-FEPE-GE 472 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~ 472 (677)
.+..+.++|++++|++++++.++.. +.|+ ..+++.+..+|...|++++|..+++++.+.+ | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556778899999999999998632 3344 3578889999999999999999999877542 2 2233 45
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++.|..+|...|++++|+.++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7889999999999999999999876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.14 Score=43.41 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcC---ChHHHHHHHHhCCCCCChHHHHHHHHHhccC-C-CCchh
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG---KLTDAERLIEAMPFNPGSIALKAANHFLQLE-P-SNAVP 522 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~-p-~~~~~ 522 (677)
...+..+++.|....+. + .++..+.-.+..++.++. +++++..++++. ++.+ | ++...
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l---------------l~~~~p~~~rd~ 73 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL---------------LPKGSKEEQRDY 73 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---------------HHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------HhcCCccchHHH
Confidence 34456667777766654 3 378888888888999988 666899988876 3334 4 34677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+..|.-+|.+.|++++|.+.++...+.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 888999999999999999999998873
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.075 Score=41.26 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-HHHHHHHHHHhh
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTNI-TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-EHYSCMIDLLGR 483 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~ 483 (677)
....+...|++++|+..|++.++.. +.+.. .+..+..++...|++++|...|+...+. .|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHH-------
Confidence 4556778888888998888888753 33456 7777888888889999999998888865 4432 22211
Q ss_pred cCChHHHHHHHHhC
Q 037537 484 AGKLTDAERLIEAM 497 (677)
Q Consensus 484 ~g~~~~A~~~~~~m 497 (677)
+.+.+|...+++.
T Consensus 75 -~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 -KMVMDILNFYNKD 87 (99)
T ss_dssp -HHHHHHHHHHCCT
T ss_pred -HHHHHHHHHHHHH
Confidence 5566777777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.35 Score=47.70 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHH
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYS 475 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 475 (677)
.+...|.++...+...|++++|+..+++++..+ |+...|..+-..+...|+.++|...++..... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 466677777777777799999999999988864 78777777777788889999999988888754 67776654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=1.3 Score=36.19 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+.++....++.+...|+.+.-.+++.++. .-+|.++....-+.++|.+.|+..+|.+++++.-++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l---------------~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREIL---------------KNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHh---------------ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44556666677777777777777777632 233457788999999999999999999999999999
Q ss_pred CCc
Q 037537 550 GVQ 552 (677)
Q Consensus 550 g~~ 552 (677)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 985
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=1.4 Score=38.27 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=75.6
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
+.-.++|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+..+ |..+.--|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456799999999998776 4567899999999999999999999998754 3444455666777776665
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
+-+....+ | -++.....+.-.|+++++.+++.+..
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 54444433 2 13444445566799999999998774
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.011 Score=59.67 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=131.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT 242 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 242 (677)
.+.+|..|-.++.+.+++.+|.+-|-+. .|...|..+|.+..+.|.+++-+..+...++..- ++..=+.++-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 4567777777777777777777666554 4556677788888888888887777765554432 3333346777777
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC------------------------CCh
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ------------------------PDL 298 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~------------------------~~~ 298 (677)
+.+++.+-++++. .|+..-...+.+-+...|. ++.|.-+|..+.. .++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~l-YeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM-YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCC-STTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccC-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 7777665444332 3555555566666666666 6666666665541 344
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
.+|-.+-.+|... +.+.-|.-.--.+. +.||. ...++..|...| .++-..+++..+ |++.-...+++-|.-
T Consensus 200 ktWKeV~~ACvd~-~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaI 271 (624)
T 3lvg_A 200 RTWKEVCFACVDG-KEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAI 271 (624)
T ss_dssp CSHHHHTHHHHHS-CTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCc-hHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHH
Confidence 5666666666655 54433322111111 12221 112222233333 333222222222 333323566777878
Q ss_pred HHHccCCHHHHHHHHhc----CCCC-------CcchHHHHHHHHHHcCChHHHH
Q 037537 378 MYSKCGNLEDARRLFDR----MPEH-------NTVSLNSMIAGYAQHGIGMEAL 420 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~ 420 (677)
.|+|-. .++-.+.++. +.-| +...|.-++-.|.+..+++.|.
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 887763 3333333332 2222 4456888888888888888764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.26 Score=38.91 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcC-----CccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHH
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFG-----FEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANH 511 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 511 (677)
-...+...+...|+++.|...|+...+... -.+....+..|..+|.+.|++++|...+++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a-------------- 72 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-------------- 72 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH--------------
Confidence 344555666667777777777766665421 1234677888999999999999999998876
Q ss_pred HhccCCCCchhHHH
Q 037537 512 FLQLEPSNAVPYVM 525 (677)
Q Consensus 512 l~~l~p~~~~~~~~ 525 (677)
++++|+++.+...
T Consensus 73 -l~l~P~~~~~~~n 85 (104)
T 2v5f_A 73 -LELDPEHQRANGN 85 (104)
T ss_dssp -HHHCTTCHHHHHH
T ss_pred -HhcCCCCHHHHhh
Confidence 5677877665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.22 Score=47.04 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhc-----CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC-Cch
Q 037537 451 VAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRA-----GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS-NAV 521 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~-~~~ 521 (677)
...|...+++..+ +.|+ -..|..|...|.+. |+.++|.+.|++. +++.|. +..
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA---------------L~LnP~~~id 240 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL---------------TRYCSAHDPD 240 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH---------------HHHCCTTCSH
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH---------------HHhCCCCCch
Confidence 4556666666664 4676 45788899999985 9999999999876 688896 499
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHHhCCCccCCc
Q 037537 522 PYVMLANIYAAS-GKWEEVATIRRLMRDRGVQKKPG 556 (677)
Q Consensus 522 ~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~~~~ 556 (677)
+++.+...|+.. |+.+++.+.+++.........|+
T Consensus 241 ~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 241 HHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 999999999985 99999999999998877654343
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.53 E-value=1.2 Score=38.70 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=87.4
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHH
Q 037537 172 TCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGL 251 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 251 (677)
.....+|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|..... +..+.-.|...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4566889999999999888 4567899999999999999999999988754 344444455567776666
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHH
Q 037537 252 QFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKL 325 (677)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m 325 (677)
++-+.....| -++.-...+.-.|+ ++++.++|.+....... ..+++..|..+.|.++..++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGd-v~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNS-TKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTC-HHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCC-HHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6655555554 23333444555588 99999888876542211 11122226667777776655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.67 Score=37.65 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhcCChHH
Q 037537 415 IGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE---GQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 415 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 489 (677)
....+.+-|.+....| .|+..+-..+..++.++..... |..+++.+.+. + .| ..+..-.|.-++.|.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445556666666656 4777777777778888876555 88888888764 2 24 23333455667899999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
|.+.++.+ ++.+|.|..+..
T Consensus 93 A~~~~~~l---------------L~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGL---------------LQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHH---------------HHHCTTCHHHHH
T ss_pred HHHHHHHH---------------HHhCCCCHHHHH
Confidence 99999876 678887655433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=1.9 Score=40.76 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=82.6
Q ss_pred ccCCHHHHHHHHhcCCCCC--cchHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHh
Q 037537 381 KCGNLEDARRLFDRMPEHN--TVSLNSMIAG-YAQH--GI------GMEALRLFEWMLETNIPPT---NITFVSVLSACA 446 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~--~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 446 (677)
+.|+..+-.+.+.+....+ ...|..++.+ ++.. |. ..+|..++++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 3455555566666665433 3467777654 3442 32 4677778888887 5677 457888888888
Q ss_pred c-----cCCHHHHHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhc-CChHHHHHHHHhC
Q 037537 447 H-----TGKVAEGQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRA-GKLTDAERLIEAM 497 (677)
Q Consensus 447 ~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m 497 (677)
. -|+.++|.+.|++..+. .| +..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 49999999999999965 67 378888899999985 9999999999876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.94 Score=34.75 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=37.4
Q ss_pred CcchHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 399 NTVSLNSMIAGYAQHGI---GMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
|+..|..+..++...++ .++|..+|++.++. .|+ ..+...+...+...|++++|..+|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445555555544433 46777777777663 343 45555556666667777777777777664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.05 E-value=2.4 Score=34.36 Aligned_cols=90 Identities=14% Similarity=-0.037 Sum_probs=63.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHH---HHHHHHhCCCCCChHHHHHHHHHhccCC-CC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD---AERLIEAMPFNPGSIALKAANHFLQLEP-SN 519 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~l~~l~p-~~ 519 (677)
.-.....+..+.+.+...... |. |+..+--.+..++.++.+..+ +..++++.....+ | ..
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--------------p~~~ 73 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--------------KEEQ 73 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--------------HHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--------------cchH
Confidence 333444555666666666554 43 777777778888998887776 8888887643211 2 23
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
......|.-+|.+.|++++|.+..+.+.+.
T Consensus 74 Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 74 RDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456778889999999999999999998773
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.09 E-value=8.9 Score=39.23 Aligned_cols=255 Identities=10% Similarity=0.064 Sum_probs=145.1
Q ss_pred CChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cC----hhHHHHHHHHHHhcCC
Q 037537 13 RDLVTGKSLHALYLKN-----LVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---AN----VFSFNVLLAAYARQLR 80 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~----~~~~~~li~~~~~~g~ 80 (677)
++++.|++.+-.+.+. ....+......+++.|...|+++...+.+..+.+ .- ....+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677787776666543 2345567788899999999999988776665554 11 1122333333333333
Q ss_pred hh--HHHHHhccCCC-CCc---------chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhH
Q 037537 81 IA--SARQLFDQIPQ-PDL---------VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLI 148 (677)
Q Consensus 81 ~~--~A~~~f~~m~~-~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 148 (677)
.+ .-..+.+.... .+. .....|...|-..|++.+|.+++..+...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------
Confidence 33 23334433322 111 12356788899999999999999998753111111111
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-------CCCCC--eeeHHHHHHHHHhCCCchHHHHHH
Q 037537 149 KQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-------GEIKD--EVSWNSMVVAYGQHREGLEALQLF 219 (677)
Q Consensus 149 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-------~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 219 (677)
-..++...+..|...+++..|..++.++ ...|+ ..-+..++..+...+++.+|-..|
T Consensus 176 --------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 176 --------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0223355667888889999998888776 11222 223566777788889999998888
Q ss_pred HHHHHC-CCCCCHhHHHHH-----HHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcC--CCHHHHHHHHh
Q 037537 220 QEMVSL-QLGLDMYTLASI-----LTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCS--GDMRDCMKVFE 291 (677)
Q Consensus 220 ~~m~~~-g~~pd~~t~~~l-----l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~~A~~~f~ 291 (677)
.+.... ...-|...+..+ +......-+..... +.....+...-++...+..|+.+|.... . ++...+.|.
T Consensus 242 ~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~-ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~-~~~~~~~~~ 319 (445)
T 4b4t_P 242 QEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQND-LIHKIQNDNNLKKLESQESLVKLFTTNELMR-WPIVQKTYE 319 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHH-HHHSHHHHSSCHHHHHHHHHHHHHHHCCSSS-HHHHHHHTC
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHH-HHHHHhhcccccccHHHHHHHHHHHhchHhh-hHHHHHHHH
Confidence 777542 111233222221 11112111222222 2222233333456778888999987742 3 677777777
Q ss_pred hCCCCC
Q 037537 292 EIPQPD 297 (677)
Q Consensus 292 ~~~~~~ 297 (677)
....++
T Consensus 320 ~~L~~~ 325 (445)
T 4b4t_P 320 PVLNED 325 (445)
T ss_dssp SSTTTC
T ss_pred HHhccc
Confidence 655433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.95 E-value=6.1 Score=32.33 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=49.8
Q ss_pred ccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 381 KCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
+||++......+-.+.. +....+.-+.....+|+-++-.+++..+... .+|++..+..+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45555555555554433 2233445556666667666666666665432 366666666666777777777777777666
Q ss_pred hHHhcCC
Q 037537 461 MKDMFGF 467 (677)
Q Consensus 461 m~~~~~~ 467 (677)
+-+. |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 6665 54
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.68 E-value=2.8 Score=35.03 Aligned_cols=98 Identities=11% Similarity=0.213 Sum_probs=69.6
Q ss_pred CCCcchHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHhccCCHHHHHHHHHHhHH
Q 037537 397 EHNTVSLNSMIAGYAQHGIG------MEALRLFEWMLETNIPPTNI----TFVSVLS---ACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 397 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m~~ 463 (677)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.- .+...+++++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35777888888888888988 8888899988874 677632 1211111 11234789999999999987
Q ss_pred hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 464 MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
. +-+- ...|.....-=.|.|++..|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5 3333 666766667778999999999999764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=88.29 E-value=2 Score=33.49 Aligned_cols=62 Identities=6% Similarity=-0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETN------IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|++++|..+++.+.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3456666777777777777777766521 1233556777777777888888888888777653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.55 E-value=2.1 Score=46.82 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+-+...|+++-|+++-++. ....|.+-.+|..|..+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~A---------------V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTS---------------TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHH---------------HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4455678888888876654 5777888999999999999999999999998877
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.14 E-value=4.5 Score=33.85 Aligned_cols=111 Identities=14% Similarity=-0.003 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHHHhcCCh------hHHHHHHhhc--CCCCC-eeeHHHHHHH------HHhCCCchHHHHHHHHHHHC
Q 037537 161 DHYASVNNSLLTCYSRNGFL------DEAKRVFYEM--GEIKD-EVSWNSMVVA------YGQHREGLEALQLFQEMVSL 225 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~------~~A~~~f~~m--~~~~~-~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~ 225 (677)
+.|..+|-..+...-+.|+. +..+++|++. ..+|+ -..|...|.. +...+++++|.++|+.++..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34556666666666666777 6667777766 22222 1122222211 12337888999999988765
Q ss_pred CCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 037537 226 QLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGL 272 (677)
Q Consensus 226 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 272 (677)
+-+- ...+.....--.+.|++..|++++...+..+..|....-+++
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 3222 444444444457788999999999988887755554433333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=1.3 Score=44.55 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh----
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD---- 548 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~---- 548 (677)
....+++.+.+.|+.++|...++.. +..+|-+...|..|+.+|.+.|+..+|++.|+..++
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~---------------~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEAL---------------TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455678888999999999887765 578888999999999999999999999999988743
Q ss_pred -CCCccCC
Q 037537 549 -RGVQKKP 555 (677)
Q Consensus 549 -~g~~~~~ 555 (677)
.|+.|.|
T Consensus 238 eLG~~P~~ 245 (388)
T 2ff4_A 238 DLGIDPGP 245 (388)
T ss_dssp HHSCCCCH
T ss_pred HhCCCCCH
Confidence 5887754
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.01 E-value=5 Score=30.77 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
-+...-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +...+|..+++-
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 35556667777778899999999999999999999999999999987633 345678777653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.51 E-value=34 Score=34.03 Aligned_cols=160 Identities=16% Similarity=0.053 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc--------cChhHHHHHHHHHHhcC-ChhHHHHHhccCCC---CCcchH---
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH--------ANVFSFNVLLAAYARQL-RIASARQLFDQIPQ---PDLVSY--- 99 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~--- 99 (677)
.....|.+.|.+.|+.++..+++..... ........|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788889999999998888877665 33445667777776643 33333333333221 122344
Q ss_pred ---HHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 037537 100 ---NTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSR 176 (677)
Q Consensus 100 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~ 176 (677)
.-++..|...|++.+|++++.++.+.=-+.|..++ + ..++-.-+.+|..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~--l--------------------------lev~lle~~~~~~ 151 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL--L--------------------------VEVQLLESKTYHA 151 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH--H--------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh--H--------------------------HHHHHHHHHHHHH
Confidence 25788999999999999999998875323332222 1 2234556678888
Q ss_pred cCChhHHHHHHhhc-----C--CCCCeeeHHHH--HHHHH-hCCCchHHHHHHHHH
Q 037537 177 NGFLDEAKRVFYEM-----G--EIKDEVSWNSM--VVAYG-QHREGLEALQLFQEM 222 (677)
Q Consensus 177 ~g~~~~A~~~f~~m-----~--~~~~~~~~~~l--i~~~~-~~g~~~~A~~~~~~m 222 (677)
.+++..+...+... . +.|.+..---. ...+. ..+++.+|...|-+.
T Consensus 152 ~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 152 LSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 89988888888665 1 12211111111 12344 678899888888665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.20 E-value=31 Score=33.30 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=86.3
Q ss_pred HHHHccCCh---HHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 037537 42 LLYSKCGCL---SAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSL 118 (677)
Q Consensus 42 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 118 (677)
+.....|++ =+|.+.+ .++..-|.+.+++++|.+++-. -...+.+.|+...|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 334456777 5555544 3455667788888888887533 23345666777666555
Q ss_pred H----HHhHhcCCCCCcccHHHHHHHhhcchh-------hHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHH
Q 037537 119 F----KDMREKRFDTDGFTLSGLITASSNNLC-------LIKQLHCLAIYCG--FDHYASVNNSLLTCYSRNGFLDEAKR 185 (677)
Q Consensus 119 ~----~~m~~~g~~p~~~t~~~ll~a~~~~~~-------~~~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 185 (677)
- +-+.+.++++|..+...++......+. ..+....+-.+.| -..|+.....+-..|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 444556777887776666666555443 2333344445555 34566677777788888888888887
Q ss_pred HHhhcCCCCCeeeHHHHHHHHHhCC
Q 037537 186 VFYEMGEIKDEVSWNSMVVAYGQHR 210 (677)
Q Consensus 186 ~f~~m~~~~~~~~~~~li~~~~~~g 210 (677)
-|-. +..++...+..|+.-+.+.+
T Consensus 158 H~il-g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 158 HLVL-GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHTT-SCTTHHHHHHHHHHHHHHTS
T ss_pred HHHh-cCCchHHHHHHHHHHHHHhc
Confidence 7742 23333345544444444333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.75 E-value=6.1 Score=39.64 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCccChHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD----MFGFEPEGEHY 474 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 474 (677)
..++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|++.|+...+ +.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666777788888888777777643 45677888888888888888888888777654 34777776543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=55 Score=34.89 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHH
Q 037537 414 GIGMEALRLFEWMLETNIPPTNIT----FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (677)
.+.+.|..+|....+.. ..+... ...+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37899999999887543 233322 223333344455355666666665433 2333333334444557899999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
|...|+.|+..+.. .+....=+..++...|+.++|..+++.+..
T Consensus 304 a~~~~~~l~~~~~~---------------~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKE---------------KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGG---------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccc---------------cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999743211 122233345577888999999998887653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.27 E-value=6.3 Score=33.59 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=62.6
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC-----CCcc-------hHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-HHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE-----HNTV-------SLNSMIAGYAQHGIGMEALRLFEWMLETN-IPPTN-ITF 438 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-~t~ 438 (677)
-.=+..+...|.++.|+-+.+.+.. +++. +...+..++...|++..|...|++.++.. .-|.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445666677778877776655321 3321 34556677777888888888887765421 11111 111
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
.++-. ...... .....++.+.---+..+|.+.|++++|+.+++.+|.+
T Consensus 104 ~~~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 104 PSTGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11100 000000 0023344555555778899999999999999999743
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.97 E-value=18 Score=29.84 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHH
Q 037537 432 PPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKA 508 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (677)
.|+..|--.+..++.++. +..++..+++.+.+. +-.-..+..--|.-++.|.|++++|+++.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l----------- 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL----------- 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHH-----------
Confidence 566655555555666655 456888899988875 22112334445566889999999999999876
Q ss_pred HHHHhccCCCCchh
Q 037537 509 ANHFLQLEPSNAVP 522 (677)
Q Consensus 509 ~~~l~~l~p~~~~~ 522 (677)
++.+|.|..+
T Consensus 104 ----L~~eP~n~QA 113 (144)
T 1y8m_A 104 ----FEHERNNKQV 113 (144)
T ss_dssp ----HHTCCCCHHH
T ss_pred ----HhcCCCcHHH
Confidence 6888876543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.08 E-value=13 Score=30.21 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 432 PPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|+..|--.+..++.++. +..+|..+++.+.+. +-.-..+..--|.-++.|.|++++|++..+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566555555555565555 456788999888876 31112445556667889999999999998876
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.94 E-value=40 Score=32.25 Aligned_cols=167 Identities=8% Similarity=0.099 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHH----HHHHhhcCCCCCcchHHHHHHHhh
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGC----FKKLNRVGYHPDDCSFVCVISACS 345 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 345 (677)
.++..=|.+.++ +++|.+++..- ...+.+. |+...|-++ .+-..+.++++|..+...++.-+.
T Consensus 37 Rtl~~Ry~~~~~-~~eAidlL~~g-----------a~~ll~~-~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 37 RTIANRYVRSKS-YEHAIELISQG-----------ALSFLKA-KQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHH-----------HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHH-----------HHHHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344444556566 77776664331 1122233 444444333 333344566666666555555544
Q ss_pred ccC---h---hHHHHHHHHHHHhhc-ccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHc---CC
Q 037537 346 NLS---P---SLGKQIHALTIKIEI-RSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQH---GI 415 (677)
Q Consensus 346 ~~~---~---~~~~~i~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 415 (677)
... . ........+..+.|- ...++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432 1 222333333333332 2222778889999999999999999988643323455555555444443 33
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 416 GMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
..++ |...-.++|. +...|++..|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 3322 1122222332 44678888898888877654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.91 E-value=21 Score=39.07 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
-|...|+++.|+.+-+..... .|+ -.+|..|...|.+.|+++.|+-.++.+|.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 356789999999999998864 664 78999999999999999999999999985
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.06 E-value=25 Score=35.80 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC----C-----CcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC--HHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE----H-----NTVSLNSMIAGYAQHGIGMEALRLFEWMLE----TNIPPT--NIT 437 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t 437 (677)
..|...|...|++.+|.+++..+.. . -+..+..-+..|...+++..|..++++... ....|+ ..-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777777888888777776542 1 123455566777777888888777777542 211222 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFG 466 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 466 (677)
+...+..+.+.+++.+|-+.|..+.+.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 45555566677777777777776665433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 677 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 6e-09
Identities = 47/370 (12%), Positives = 108/370 (29%), Gaps = 26/370 (7%)
Query: 174 YSRNGFLDEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM 231
+ G + A+R ++ + + + Q R + + +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PL 65
Query: 232 YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFE 291
A E + + G + +GDM ++ +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 292 EIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSL 351
Q + L+ + + L + P+ + N +
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 352 GKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIA 408
IH + + N + L + + + A + R ++ V ++
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE 468
Y + G+ A+ + +E P + ++ +A G VAE + +
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC--YNTALRLCP 302
Query: 469 PEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLAN 528
+ + + ++ G + +A RL KA L++ P A + LA+
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYR-----------KA----LEVFPEFAAAHSNLAS 347
Query: 529 IYAASGKWEE 538
+ GK +E
Sbjct: 348 VLQQQGKLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.29 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.77 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.71 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.68 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.62 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.59 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.46 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.26 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.12 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.08 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.01 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.98 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.96 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.84 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.7 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.63 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.41 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.69 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.66 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.63 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.35 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 83.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.7e-18 Score=176.70 Aligned_cols=370 Identities=15% Similarity=0.121 Sum_probs=256.6
Q ss_pred HHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHH
Q 037537 73 AAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIK 149 (677)
Q Consensus 73 ~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 149 (677)
..+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++..+.. |+
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~------------------- 65 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL------------------- 65 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------------------
Confidence 344556666666666665542 3 34556666666777777777777777665531 22
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 037537 150 QLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL 227 (677)
Q Consensus 150 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 227 (677)
+..++..+...|.+.|++++|.+.+... ....+...+..........+....+............
T Consensus 66 -------------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (388)
T d1w3ba_ 66 -------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred -------------CHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334455666666777777777777665 1122333344444444445555555555554444332
Q ss_pred CCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHH
Q 037537 228 GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTM 304 (677)
Q Consensus 228 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~l 304 (677)
.+..............+....+........... +.+...+..+...+...|. .++|...+++.. ..+...|..+
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T d1w3ba_ 133 -DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp -TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCc-HHHHHHHHHHHHHhCcccHHHHHHH
Confidence 223333334444455566666666666555543 3345566666677777777 788777777653 2345567777
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC
Q 037537 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN 384 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 384 (677)
...+... |++++|+..|.+....+ |+. ...+..+...|.+.|+
T Consensus 210 ~~~~~~~-~~~~~A~~~~~~~~~~~--~~~----------------------------------~~~~~~l~~~~~~~~~ 252 (388)
T d1w3ba_ 210 GNVLKEA-RIFDRAVAAYLRALSLS--PNH----------------------------------AVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTT-TCTTHHHHHHHHHHHHC--TTC----------------------------------HHHHHHHHHHHHHTTC
T ss_pred hhhhhcc-ccHHHHHHHHHHhHHHh--hhH----------------------------------HHHHHHHHHHHHHCCC
Confidence 7777777 88888888888776542 221 4456677888899999
Q ss_pred HHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037537 385 LEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMM 461 (677)
Q Consensus 385 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 461 (677)
+++|...|++..+ .+..+|..+...+...|++++|++.|+...... +.+...+..+...+...|++++|...|++.
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 331 (388)
T d1w3ba_ 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999987643 356789999999999999999999999988853 666788889999999999999999999998
Q ss_pred HHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 462 KDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 462 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
.+ +.|+ ...+..+..+|.+.|++++|.+.+++. ++++|+++.+|..|+.+|.+.|+
T Consensus 332 l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 332 LE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEA---------------IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH---------------HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHcCC
Confidence 75 4564 677889999999999999999999876 68899999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.1e-17 Score=170.68 Aligned_cols=355 Identities=15% Similarity=0.167 Sum_probs=261.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 181 (677)
+...+.+.|++++|++.|+++.+. .|+ ++.++..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~--------------------------------~~~~~~~la~~~~~~~~~~ 50 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPD--------------------------------NTGVLLLLSSIHFQCRRLD 50 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------------CHHHHHHHHHHHHHcCCHH
Confidence 345567889999999999888764 233 3444566777888899999
Q ss_pred HHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 182 EAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 182 ~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
+|...|++. ...| +..+|..+...|.+.|++++|++.+......... +.............................
T Consensus 51 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (388)
T d1w3ba_ 51 RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 999999887 2233 4567888888899999999999999888775432 233333333333344444444444444444
Q ss_pred hCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcch
Q 037537 260 SGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCS 336 (677)
Q Consensus 260 ~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t 336 (677)
.. .................+. ...+...+.... ..+...+..+...+... |+.++|...+.+.... .|+.
T Consensus 130 ~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~--~p~~-- 202 (388)
T d1w3ba_ 130 YN-PDLYCVRSDLGNLLKALGR-LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTL--DPNF-- 202 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--CTTC--
T ss_pred cc-cccccccccccccccccch-hhhhHHHHHHhhccCcchhHHHHhhccccccc-CcHHHHHHHHHHHHHh--Cccc--
Confidence 33 2333333444444444455 666665555443 23345566666666666 7778887777776653 3332
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHc
Q 037537 337 FVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQH 413 (677)
Q Consensus 337 ~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 413 (677)
..++..+...|...|++++|...|+.... .+...|..+...+.+.
T Consensus 203 --------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (388)
T d1w3ba_ 203 --------------------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp --------------------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred --------------------------------HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC
Confidence 56677888999999999999999987654 4566788899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHH
Q 037537 414 GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERL 493 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 493 (677)
|++++|++.|++.++.. +-+..++..+...+...|++++|.+.++..... .+.+...+..+...|.+.|++++|.+.
T Consensus 251 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 327 (388)
T d1w3ba_ 251 GLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHH
Confidence 99999999999999853 334678899999999999999999999998875 445678888999999999999999999
Q ss_pred HHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 494 IEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+++. ++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 328 ~~~a---------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 328 YRKA---------------LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHH---------------TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHH---------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9876 477889999999999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.4e-11 Score=117.91 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=102.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCC
Q 037537 409 GYAQHGIGMEALRLFEWMLETN-IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGK 486 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 486 (677)
.+...+...+|.+.|.+..+.. -.++..++..+...+...|++++|...|+..... .| +...|..+...|.+.|+
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~ 221 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQ 221 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhccccccc
Confidence 3445567788999999887643 1234667788888899999999999999998865 44 47788899999999999
Q ss_pred hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 487 LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+++|.+.+++. ++++|.++.+|..|+.+|...|++++|++.|++..+
T Consensus 222 ~~~A~~~~~~a---------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 222 SEEAVAAYRRA---------------LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHH---------------HHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999876 578899999999999999999999999999998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=4.6e-10 Score=110.37 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=91.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 444 (677)
..++..+...+...|++++|...|++... .+...|..+...|...|++++|++.|++.++. .|+ ..++..+..+
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 45667888889999999999999988643 35678999999999999999999999999884 455 6788889999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccC------------hHHHHHHHHHHhhcCChHHHH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPE------------GEHYSCMIDLLGRAGKLTDAE 491 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~ 491 (677)
|.+.|++++|...|++..+. .|+ ...|..+-.++...|+.+.+.
T Consensus 250 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998763 332 123455555555555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=4.5e-07 Score=89.21 Aligned_cols=291 Identities=14% Similarity=0.056 Sum_probs=185.2
Q ss_pred HHHHHhcCChhHHHHHHhhc-CCCCC------eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HhHHHHHH
Q 037537 171 LTCYSRNGFLDEAKRVFYEM-GEIKD------EVSWNSMVVAYGQHREGLEALQLFQEMVSLQL-GLD----MYTLASIL 238 (677)
Q Consensus 171 i~~~~~~g~~~~A~~~f~~m-~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll 238 (677)
...+...|++++|.+++++. ...|+ ...++.+...|...|++++|+..|++..+... .++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 35677889999999999876 22232 23577778888999999999999988865321 112 23445556
Q ss_pred HHHccCCChHHHHHHHHHHHHh----CCCCc---hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--------CChhhHHH
Q 037537 239 TAFTSLEDLVGGLQFHAHLIKS----GFHQN---SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--------PDLVLWNT 303 (677)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~----g~~~~---~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--------~~~~~~~~ 303 (677)
..+...|++..+...+...... +.... ...+..+...|...|+ ++.+...++.... ....++..
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6677888888888887776542 11111 1244455667777777 8888777765431 11223344
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
+...+... +...++...+.+.....-...... +.....+..+...+...|
T Consensus 178 ~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 178 LIQCSLAR-GDLDNARSQLNRLENLLGNGKYHS-----------------------------DWISNANKVRVIYWQMTG 227 (366)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHTTSCCCH-----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHhcccC-----------------------------chHHHHHHHHHHHHHhcc
Confidence 44445555 667777766665543211111000 000334566777888999
Q ss_pred CHHHHHHHHhcCCCC-------CcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCH
Q 037537 384 NLEDARRLFDRMPEH-------NTVSLNSMIAGYAQHGIGMEALRLFEWMLE----TNIPPT-NITFVSVLSACAHTGKV 451 (677)
Q Consensus 384 ~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~ 451 (677)
+.++|...++...+. ....+..+...|...|++++|...+++.+. .+..|+ ..++..+...+...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 999999999877641 123466678899999999999999998764 344555 35677788889999999
Q ss_pred HHHHHHHHHhHHh---cCCcc----ChHHHHHHHHHHhhcCChHHHHH
Q 037537 452 AEGQKYFSMMKDM---FGFEP----EGEHYSCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 452 ~~a~~~~~~m~~~---~~~~p----~~~~~~~li~~~~~~g~~~~A~~ 492 (677)
++|.+.++...+. .|... .......++..+...++++++..
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 9999999887543 12211 11233445555666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=8.5e-08 Score=93.15 Aligned_cols=193 Identities=9% Similarity=0.078 Sum_probs=149.5
Q ss_pred hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHH
Q 037537 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMY 379 (677)
Q Consensus 300 ~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y 379 (677)
.++-+-..+.+. +.+++|+++++++++. .|+. ..+|+.....+
T Consensus 45 a~~~~~~~~~~~-e~~~~Al~~~~~ai~l--nP~~----------------------------------~~a~~~r~~~l 87 (315)
T d2h6fa1 45 VYDYFRAVLQRD-ERSERAFKLTRDAIEL--NAAN----------------------------------YTVWHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHT-CCCHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHH--CCCC----------------------------------hHHHHHHHHHH
Confidence 445555556666 8889999999998873 5654 45667777777
Q ss_pred HccC-CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 380 SKCG-NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 380 ~k~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
.+.| ++++|...++...+ .+..+|+.+...+.+.|++++|++.++++++.. +-+...|..+...+.+.|++++|.
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHH
Confidence 7776 48999999988753 467789999999999999999999999999853 445789999999999999999999
Q ss_pred HHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCC------hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHH
Q 037537 456 KYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGK------LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLAN 528 (677)
Q Consensus 456 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~ 528 (677)
..++.+.+. .| +...|+.+..++.+.|. +++|.+.+.+ +++++|.+...|.-+..
T Consensus 167 ~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~---------------al~~~P~~~~~~~~l~~ 228 (315)
T d2h6fa1 167 QYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE---------------MIKLVPHNESAWNYLKG 228 (315)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH---------------HHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHH---------------HHHhCCCchHHHHHHHH
Confidence 999999875 55 46677777666666665 4556555544 47889999999999988
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 037537 529 IYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 529 ~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++...| .+++.+.++...+.
T Consensus 229 ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 229 ILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHTTTC-GGGCHHHHHHHHHH
T ss_pred HHHhcC-hHHHHHHHHHHHHh
Confidence 876655 57777777777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=6.6e-07 Score=87.93 Aligned_cols=263 Identities=10% Similarity=0.006 Sum_probs=176.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC----HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCC-C----chhhHHHH
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLD----MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFH-Q----NSHIGSGL 272 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~l 272 (677)
....+...|++++|++++++..+.....+ ...+..+..++...|+++.|...+..+.+.... + ....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34567789999999999999887532212 234566667888899999999999988764211 1 12345556
Q ss_pred HHHHHHcCCCHHHHHHHHhhCC-------CCC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 037537 273 IDLYAKCSGDMRDCMKVFEEIP-------QPD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI 341 (677)
Q Consensus 273 i~~y~~~g~~~~~A~~~f~~~~-------~~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (677)
...|...|+ +..+...+.+.. .+. ...+..+...+... |+++++...+..........+....
T Consensus 98 ~~~~~~~~~-~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~---- 171 (366)
T d1hz4a_ 98 SEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQ---- 171 (366)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGG----
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh-cchhhhHHHHHHHHHHhhhhhhhhH----
Confidence 677778788 888887776542 111 12344455566677 8888888888887764332222211
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcC-------CCC---CcchHHHHHHHHH
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRM-------PEH---NTVSLNSMIAGYA 411 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~-------~~~---~~~~~~~li~~~~ 411 (677)
...+..+...+...|+...+...+... ... ....+..+...+.
T Consensus 172 ---------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T d1hz4a_ 172 ---------------------------LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 224 (366)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 223334445555666666665554432 221 2235666777888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCccC-hHHHHHHHHHHhhc
Q 037537 412 QHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACAHTGKVAEGQKYFSMMKDM---FGFEPE-GEHYSCMIDLLGRA 484 (677)
Q Consensus 412 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~ 484 (677)
..|++++|...+++........+ ..++..+..++...|++++|...++.+... .+..|+ ...+..+..+|.+.
T Consensus 225 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 225 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 99999999999998776432222 345566778889999999999999987642 144454 45788889999999
Q ss_pred CChHHHHHHHHhC
Q 037537 485 GKLTDAERLIEAM 497 (677)
Q Consensus 485 g~~~~A~~~~~~m 497 (677)
|++++|.+.+++.
T Consensus 305 g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 305 GRKSDAQRVLLDA 317 (366)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999865
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=9.6e-07 Score=85.29 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-C-cchHHHHHHHHHHcCChHHHHHHHH
Q 037537 349 PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-N-TVSLNSMIAGYAQHGIGMEALRLFE 424 (677)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~~ 424 (677)
.+.+..++...++...+.+ ..++..++..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.++|.++|+
T Consensus 80 ~~~a~~i~~ral~~~~p~~-~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 80 SDEAANIYERAISTLLKKN-MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3555666666665433333 67888889999999999999999998754 2 3 2369999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCCh
Q 037537 425 WMLETNIPPTNITFVSVLSA-CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGS 503 (677)
Q Consensus 425 ~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (677)
++++.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|+.+|++....
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~--- 232 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS--- 232 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS---
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Confidence 999865 3344444443332 34568999999999999986 3335778999999999999999999999975211
Q ss_pred HHHHHHHHHhccCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 504 IALKAANHFLQLEPS-NAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 504 ~~~~~~~~l~~l~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
....|+ ....|...+..-...|+.+.+.++.+++.+.
T Consensus 233 ---------~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 233 ---------GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp ---------SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---------CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001121 2346888888888999999999999988663
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=4.5e-08 Score=96.31 Aligned_cols=228 Identities=7% Similarity=-0.043 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCC-CHHHHHHHHhhCC---CCChhhHHHHH-hhhcccCCCHHHHHHH
Q 037537 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG-DMRDCMKVFEEIP---QPDLVLWNTMI-SGYSQKEEYSDQALGC 321 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~~A~~~f~~~~---~~~~~~~~~li-~~~~~~~~~~~~A~~l 321 (677)
++++...+..+++.. +.+...+..+...+...+. +.++|...++++. .++...|...+ ..+... +.+++|+..
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA-VAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhc-cccHHHHHH
Confidence 445555555555443 3344444444444444332 1556666665543 23444444433 333344 667777777
Q ss_pred HHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcc
Q 037537 322 FKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTV 401 (677)
Q Consensus 322 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~ 401 (677)
++..... .|+. ...++.+...|.+.|++++|...+....+-+..
T Consensus 167 ~~~~i~~--~p~~----------------------------------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 210 (334)
T d1dcea1 167 TDSLITR--NFSN----------------------------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 210 (334)
T ss_dssp HHTTTTT--TCCC----------------------------------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred HHHHHHc--CCCC----------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH
Confidence 7666543 2322 556667777777778777776655544332111
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL 480 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 480 (677)
. ......+...+..+++...+....... +++..++..+...+...|+.++|...+....+. .| +...+..+..+
T Consensus 211 ~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~ 285 (334)
T d1dcea1 211 E-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRA 285 (334)
T ss_dssp H-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHH
Confidence 1 123344556677788888888888754 444556666677777888999999888877643 45 46678888899
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
|.+.|++++|.+.+++. ++++|.+...|..|...+.-
T Consensus 286 ~~~~~~~~eA~~~~~~a---------------i~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 286 LDPLLYEKETLQYFSTL---------------KAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HCTGGGHHHHHHHHHHH---------------HHHCGGGHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH---------------HHHCcccHHHHHHHHHHHhH
Confidence 99999999999999876 58888888888877766653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=4.9e-07 Score=87.58 Aligned_cols=209 Identities=9% Similarity=0.055 Sum_probs=123.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK 278 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 278 (677)
|+.+-..+.+.+.+++|++++++.++. .|+. ...|+.....+.+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~----------------------------------~~a~~~r~~~l~~ 89 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NAAN----------------------------------YTVWHFRRVLLKS 89 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH--CCCC----------------------------------hHHHHHHHHHHHH
Confidence 455555666666777777777776662 3432 2233333333333
Q ss_pred cCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHH
Q 037537 279 CSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQI 355 (677)
Q Consensus 279 ~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i 355 (677)
.|+++++|...+++.. ..+..+|+.+...+.+. |++++|++.|.++.+. .|+.
T Consensus 90 l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l-~~~~eAl~~~~kal~~--dp~n--------------------- 145 (315)
T d2h6fa1 90 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPSQELEFIADILNQ--DAKN--------------------- 145 (315)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHH--CTTC---------------------
T ss_pred hCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh-ccHHHHHHHHhhhhhh--hhcc---------------------
Confidence 3322455555544432 23455666666666666 6677777777776653 2332
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCC------hHHHHHHHHHH
Q 037537 356 HALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGI------GMEALRLFEWM 426 (677)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~------~~~A~~l~~~m 426 (677)
..+|+.+...|.+.|++++|.+.|+.+.+ .+...|+.+...+...+. .++|++.+.+.
T Consensus 146 -------------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~a 212 (315)
T d2h6fa1 146 -------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212 (315)
T ss_dssp -------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHH
Confidence 55566666677777777777777776654 345567666666555554 57888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCc-cChHHHHHHHHHHhh
Q 037537 427 LETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE-PEGEHYSCMIDLLGR 483 (677)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~ 483 (677)
++.. +.|...|..+...+...| .+++.+.++...+. ... .+...+..+++.|..
T Consensus 213 l~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 213 IKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred HHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh-CCCcCCHHHHHHHHHHHHH
Confidence 8853 335666776666665544 46777777777654 222 234556667776644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1e-07 Score=89.67 Aligned_cols=196 Identities=13% Similarity=0.047 Sum_probs=113.9
Q ss_pred hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHH
Q 037537 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMY 379 (677)
Q Consensus 300 ~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y 379 (677)
.|..+...|.+. |++++|++.|++.... .|+. +.+++.+...|
T Consensus 39 ~~~~~G~~y~~~-g~~~~A~~~~~~al~l--~p~~----------------------------------~~a~~~lg~~~ 81 (259)
T d1xnfa_ 39 LLYERGVLYDSL-GLRALARNDFSQALAI--RPDM----------------------------------PEVFNYLGIYL 81 (259)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CCCC----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHhhcc--CCCC----------------------------------HHHHhhhchHH
Confidence 444555566666 7777777777776652 3442 55667777777
Q ss_pred HccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 380 SKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
.+.|++++|...|++..+ | +..+|..+...|...|++++|++.|++.++.. +.+......+..+....+..+....
T Consensus 82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T d1xnfa_ 82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEV 160 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHH
Confidence 788888888887777653 2 45567777788888888888888888887743 2334333333334444455444444
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHH-HHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERL-IEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
+....... .++...++. +..+............ ..... . .....|....+|..|+..|...|+
T Consensus 161 ~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~lg~~~~~~g~ 224 (259)
T d1xnfa_ 161 LKQHFEKS---DKEQWGWNI-VEFYLGNISEQTLMERLKADAT-D-----------NTSLAEHLSETNFYLGKYYLSLGD 224 (259)
T ss_dssp HHHHHHHS---CCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCC-S-----------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcc---chhhhhhhH-HHHHHHHHHHHHHHHHHHHHHH-H-----------hhhcCcccHHHHHHHHHHHHHCCC
Confidence 44444332 222222222 2222211111111111 11111 0 112334455678889999999999
Q ss_pred hHHHHHHHHHHHhC
Q 037537 536 WEEVATIRRLMRDR 549 (677)
Q Consensus 536 ~~~a~~~~~~m~~~ 549 (677)
+++|.+.+++....
T Consensus 225 ~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 225 LDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999987754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=2.7e-06 Score=81.96 Aligned_cols=213 Identities=11% Similarity=0.108 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCC-------------CHHHHHHHHhhCC----CCChhhHHHHHhhhc
Q 037537 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG-------------DMRDCMKVFEEIP----QPDLVLWNTMISGYS 309 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-------------~~~~A~~~f~~~~----~~~~~~~~~li~~~~ 309 (677)
.+.+..+|++++..- +.+..+|-.-+..+-+.+. ..++|..+|++.. ..+...|...+..+.
T Consensus 32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 445666777777653 3344555544443322111 0345555555432 233344555555555
Q ss_pred ccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHH
Q 037537 310 QKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDAR 389 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 389 (677)
+. |+.++|..+|+++... .|.. . ..++..++....+.|+++.|+
T Consensus 111 ~~-~~~~~a~~i~~~~l~~--~~~~--------------------------------~-~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 111 SR-MKYEKVHSIYNRLLAI--EDID--------------------------------P-TLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HT-TCHHHHHHHHHHHHTS--SSSC--------------------------------T-HHHHHHHHHHHHHHHCHHHHH
T ss_pred hc-ccHHHHHHHHHHHHHH--hcCC--------------------------------h-HHHHHHHHHHHHHcCChHHHH
Confidence 55 5666666666665542 2221 1 345677888888889999999
Q ss_pred HHHhcCCCCCcc---hHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037537 390 RLFDRMPEHNTV---SLNSMIAG-YAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 390 ~~~~~~~~~~~~---~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 465 (677)
++|++..+..+. .|...... +...|+.+.|..+|+.+++. .+.+...+...+..+...|+++.|+.+|+...+..
T Consensus 155 ~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 155 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 999887653332 33333322 23468899999999999985 25557789999999999999999999999998864
Q ss_pred CCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 466 GFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 466 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+..|+ ...|...+..-.+.|+++.+.++.+++
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554 457888888888899999999998876
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=2.6e-06 Score=79.62 Aligned_cols=186 Identities=9% Similarity=-0.073 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHh
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISAC 344 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 344 (677)
++..+...|.+.|+ +++|...|++.. ..+..+|+.+...|.+. |++++|+..|++..+. .|+.
T Consensus 39 ~~~~~G~~y~~~g~-~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~---------- 104 (259)
T d1xnfa_ 39 LLYERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLEL--DPTY---------- 104 (259)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC----------
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHhhccCCCCHHHHhhhchHHHHH-HHHHHhhhhhhHHHHH--Hhhh----------
Confidence 44555666777777 777777777654 34566788888888888 8888888888888763 3442
Q ss_pred hccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHH
Q 037537 345 SNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 345 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 421 (677)
..++..+...|...|++++|...|+...+ | +...+..+..++.+.+..+.+..
T Consensus 105 ------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T d1xnfa_ 105 ------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 160 (259)
T ss_dssp ------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ------------------------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHH
Confidence 44566777778888888888888876643 2 33333344455556666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHh-c---cCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACA-H---TGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~-~---~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
+........ ++...+.. +..+. . .+..+.+...+..... ..|+ ...|..+...|...|++++|.+.|++
T Consensus 161 ~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 234 (259)
T d1xnfa_ 161 LKQHFEKSD--KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKL 234 (259)
T ss_dssp HHHHHHHSC--CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhccc--hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665532 22222222 22221 1 1222333322222221 1232 34667788899999999999999987
Q ss_pred C
Q 037537 497 M 497 (677)
Q Consensus 497 m 497 (677)
.
T Consensus 235 a 235 (259)
T d1xnfa_ 235 A 235 (259)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=5.7e-06 Score=66.48 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=85.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcC
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG 485 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 485 (677)
-...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|...+....+. -+.+...|..+..+|.+.|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHcc
Confidence 3456778899999999999998853 445677888888889999999999999998875 2346778888889999999
Q ss_pred ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH
Q 037537 486 KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY 530 (677)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y 530 (677)
++++|...+++. ++++|+++..+..+.++-
T Consensus 86 ~~~~A~~~~~~a---------------~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEG---------------LKHEANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHH---------------HTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHh
Confidence 999999998876 577788877777766553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.26 E-value=1.6e-06 Score=84.83 Aligned_cols=157 Identities=12% Similarity=0.002 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 037537 99 YNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178 (677)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 178 (677)
+..++...-..+..++|++++++..+. .|+..+.-....- +...+ ..+...+...|
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~----------~l~~l------------~~~~~~~~~~~ 87 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRRE----------VLQHL------------ETEKSPEESAA 87 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHH----------HHHHH------------HTTSCHHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHH----------HHHHH------------hhhcchHHHHH
Confidence 334444444444568999999998864 4765443111100 00000 00011233445
Q ss_pred ChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHhHHH-HHHHHHccCCChHHHHHH
Q 037537 179 FLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHRE--GLEALQLFQEMVSLQLGLDMYTLA-SILTAFTSLEDLVGGLQF 253 (677)
Q Consensus 179 ~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~-~ll~a~~~~~~~~~a~~~ 253 (677)
++++|...|+.. ..+.+...|..+..++...++ .++|+..+.++.+... ++...+. .....+...+..+.|...
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHH
Confidence 566777777765 223355566666666665544 5677777777766321 1222222 222333344444444444
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHcCC
Q 037537 254 HAHLIKSGFHQNSHIGSGLIDLYAKCSG 281 (677)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~li~~y~~~g~ 281 (677)
+..+++.. +.+...++.+...|.+.|+
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 44444332 2233344444444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2e-05 Score=69.54 Aligned_cols=121 Identities=11% Similarity=0.017 Sum_probs=101.8
Q ss_pred HHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
...+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5567789999999999999998999999999999999999999999999999954 344788999999999999999999
Q ss_pred HHHHHhHHhc-----------CC--ccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 456 KYFSMMKDMF-----------GF--EPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 456 ~~~~~m~~~~-----------~~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..|+...... |. .++ ..++..+..+|.+.|++++|.+.++..
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999987531 11 111 245667788899999999999998865
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=6.1e-06 Score=73.62 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHH
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANH 511 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 511 (677)
|+...+......+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|...|++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a-------------- 64 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRA-------------- 64 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHH--------------
Confidence 44444444555555556666666666555543 23 3445555555666666666666665544
Q ss_pred HhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 512 FLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 512 l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
++++|.++.+|..++.+|...|++++|+..+++..
T Consensus 65 -l~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 65 -LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp -TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35555555566666666666666666666665544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.8e-05 Score=67.55 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=92.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhh
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGR 483 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 483 (677)
.....|.+.|++++|+..|++.++.. +-+...|..+...+...|++++|.+.|+.+.+. .| +...|..+..+|..
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHHHH
Confidence 34567888999999999999998854 444678888888899999999999999999865 45 46788888999999
Q ss_pred cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH--HhcCChHHHHHH
Q 037537 484 AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY--AASGKWEEVATI 542 (677)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y--~~~g~~~~a~~~ 542 (677)
.|++++|.+.+++. ++++|.++..+..+..+. ...+.+++|...
T Consensus 91 ~g~~~eA~~~~~~a---------------~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988876 577788888777765553 334456666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=4.1e-05 Score=67.48 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=85.4
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHH
Q 037537 72 LAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQL 151 (677)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i 151 (677)
...+...|+++.|++.|+.+..++..+|..+...|...|++++|++.|++..+.. |
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p---------------------- 67 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--K---------------------- 67 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--h----------------------
Confidence 3455667788888888887777777777778888888888888888887776642 2
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCC-------------e---eeHHHHHHHHHhCCCch
Q 037537 152 HCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKD-------------E---VSWNSMVVAYGQHREGL 213 (677)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~-------------~---~~~~~li~~~~~~g~~~ 213 (677)
.+...|..+-.+|.+.|++++|.+.|++. ...++ . .++..+...+.+.|+++
T Consensus 68 ----------~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~ 137 (192)
T d1hh8a_ 68 ----------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 137 (192)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred ----------hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence 23445566667777778888877777664 00111 1 12445667788888888
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 037537 214 EALQLFQEMVSLQLGLDM 231 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~ 231 (677)
+|.+.|.........|+.
T Consensus 138 ~A~~~l~~A~~~~~~~~~ 155 (192)
T d1hh8a_ 138 KAEEQLALATSMKSEPRH 155 (192)
T ss_dssp HHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHhcCCCcch
Confidence 888888887765444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.08 E-value=4.2e-06 Score=74.75 Aligned_cols=91 Identities=7% Similarity=-0.062 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLL 481 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 481 (677)
.......|.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|...|+...+ +.|+ ...|..+..+|
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 4445566667777777777777776643 33456666666777777777777777777663 4553 55666677777
Q ss_pred hhcCChHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAM 497 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m 497 (677)
.+.|++++|...|++.
T Consensus 83 ~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 83 LEMESYDEAIANLQRA 98 (201)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7777777777777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.7e-05 Score=63.60 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=81.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
-...+...|++++|...|....+. .| +...|..+..+|.+.|++++|++.+++. ++++|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------l~~~p~~ 70 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT---------------VDLKPDW 70 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhH---------------HHhccch
Confidence 346678899999999999999975 45 5778999999999999999999999877 6889999
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+..|..++.+|...|++++|+..+++..+.
T Consensus 71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.1e-05 Score=65.04 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCccC-hHHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEPE-GEHYSCMID 479 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 479 (677)
..+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.+ ++++|..+++.+.+. ...|+ ...+..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHH
Confidence 457788888999999999999999865 556788888888887654 455799999888754 22233 346777889
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
+|.+.|++++|.+.|+++ ++++|++..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~a---------------L~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGL---------------LQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHH---------------HHhCcCCHHHHHHHH
Confidence 999999999999999876 678888776655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.98 E-value=1.5e-05 Score=63.32 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=66.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
...+.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|...+++. ++++|.++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~ 84 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHA---------------RMLDPKDI 84 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccc---------------cccccccc
Confidence 44566777888888888877764 45 4677777788888888888888887765 57778888
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
.+|..|+..|...|++++|.+.+++.
T Consensus 85 ~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 85 AVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888888888888888887764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=0.00017 Score=68.28 Aligned_cols=198 Identities=11% Similarity=0.057 Sum_probs=99.3
Q ss_pred HHHHHHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHh
Q 037537 71 LLAAYARQLRIASARQLFDQIPQ-----PD----LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITAS 141 (677)
Q Consensus 71 li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 141 (677)
....|..+|++++|.+.|.+..+ .| ..+|+.+...|.+.|++++|++.+++..+.-...+ .+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--~~~~----- 115 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRR----- 115 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHH-----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--cchh-----
Confidence 34556666666666666655432 11 24567777777778888888777776543210000 0000
Q ss_pred hcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChhHHHHHHhhc----C--CCC--CeeeHHHHHHHHHhCCCc
Q 037537 142 SNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYS-RNGFLDEAKRVFYEM----G--EIK--DEVSWNSMVVAYGQHREG 212 (677)
Q Consensus 142 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~f~~m----~--~~~--~~~~~~~li~~~~~~g~~ 212 (677)
...++..+...|. ..|++++|.+.+++. . ..+ -..+|..+...|...|++
T Consensus 116 ---------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y 174 (290)
T d1qqea_ 116 ---------------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (290)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence 0112233444443 357777777777665 0 011 122466677777777888
Q ss_pred hHHHHHHHHHHHCCCCCCH------hHHHHHHHHHccCCChHHHHHHHHHHHHhCCC-C---chhhHHHHHHHHHHc--C
Q 037537 213 LEALQLFQEMVSLQLGLDM------YTLASILTAFTSLEDLVGGLQFHAHLIKSGFH-Q---NSHIGSGLIDLYAKC--S 280 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~---~~~~~~~li~~y~~~--g 280 (677)
++|++.|++.......... ..+...+..+...++++.|.+.+....+.... + .......++.+|-.. +
T Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 8888877777654321111 11122233344456666666655555433210 0 112334444444432 2
Q ss_pred CCHHHHHHHHhhCCCCC
Q 037537 281 GDMRDCMKVFEEIPQPD 297 (677)
Q Consensus 281 ~~~~~A~~~f~~~~~~~ 297 (677)
. +++|...|+++.+-|
T Consensus 255 ~-~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 255 Q-LSEHCKEFDNFMRLD 270 (290)
T ss_dssp T-HHHHHHHHTTSSCCC
T ss_pred H-HHHHHHHHHHHhhcC
Confidence 2 556666666555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=3.4e-05 Score=73.29 Aligned_cols=166 Identities=10% Similarity=0.026 Sum_probs=121.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT-- 434 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-- 434 (677)
...|......|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+.
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 44567778889999999999999987643 12 35789999999999999999999998765211 111
Q ss_pred HHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcC---CccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHH
Q 037537 435 NITFVSVLSACA-HTGKVAEGQKYFSMMKDMFG---FEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAA 509 (677)
Q Consensus 435 ~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~---~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (677)
..++..+...|. ..|++++|.+.++...+.+. -.+. ..++..+...|.+.|++++|.+.+++..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~----------- 185 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI----------- 185 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH-----------
Confidence 345666666664 46999999999998865321 1121 3467888999999999999999998752
Q ss_pred HHHhccCCCCc-------hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 510 NHFLQLEPSNA-------VPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 510 ~~l~~l~p~~~-------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...|.+. ..+..++..|...|+++.|.+.+++..+.
T Consensus 186 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 186 ----KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp ----HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred ----HhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2222221 23556677788899999999999887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.01 Score=56.00 Aligned_cols=273 Identities=11% Similarity=0.098 Sum_probs=175.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCCh
Q 037537 168 NSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDL 247 (677)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 247 (677)
..+.+.+.+.|.++.|..++..+ . -|.-++..+.+.++++.|.+++.+. -+..+|..+..+|.+....
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~-~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNV-S-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 85 (336)
T ss_dssp -----------CTTTHHHHHHHT-T-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC-C-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHH
Confidence 45667777889999999999987 2 3788889999999999999888755 2566888888888776655
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHH
Q 037537 248 VGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKK 324 (677)
Q Consensus 248 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~ 324 (677)
..+ ++.......+......++..|-..|. .++...+++... ..+...++.++..|++. + .++-++.++.
T Consensus 86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~-~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~-~-~~kl~e~l~~ 157 (336)
T d1b89a_ 86 RLA-----QMCGLHIVVHADELEELINYYQDRGY-FEELITMLEAALGLERAHMGMFTELAILYSKF-K-PQKMREHLEL 157 (336)
T ss_dssp HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-C-HHHHHHHHHH
T ss_pred HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHcCCccchHHHHHHHHHHHHh-C-hHHHHHHHHh
Confidence 443 22233334555566788999999888 999999998643 45667788999999887 4 4666665544
Q ss_pred HhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHH
Q 037537 325 LNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLN 404 (677)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~ 404 (677)
.. +.....-++..|.. ...|.-++-.|.+.|.+++|..+.-.-+ ++.....
T Consensus 158 ~s------~~y~~~k~~~~c~~----------------------~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~ 208 (336)
T d1b89a_ 158 FW------SRVNIPKVLRAAEQ----------------------AHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEG 208 (336)
T ss_dssp HS------TTSCHHHHHHHHHT----------------------TTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHH
T ss_pred cc------ccCCHHHHHHHHHH----------------------cCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHH
Confidence 32 22334455666655 4456677888889999988877654322 2233345
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------------ccCCHHHHHHHHHHhHHhcCCccCh
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA-------------HTGKVAEGQKYFSMMKDMFGFEPEG 471 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-------------~~g~~~~a~~~~~~m~~~~~~~p~~ 471 (677)
..+..+.+.++++...++....++. .|+ ..+.+|.... +.+++.....+++...+. + +.
T Consensus 209 ~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~-n---~~ 280 (336)
T d1b89a_ 209 QFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-N---NK 280 (336)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT-C---CH
T ss_pred HHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc-C---hH
Confidence 5666677777777666666655542 343 2234444433 444455555555554432 3 34
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+.+++.+.|...++++.-++.+++-
T Consensus 281 ~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 68899999999999987777777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00013 Score=62.62 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=68.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
+|+.+..+|.+.|++++|...++...+. .| ++..|..+..+|...|++++|...|++. +++
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a---------------l~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKV---------------LQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc---cccchhhhHHHHHHHHHhhhHHHHHHHHHHH---------------HHh
Confidence 4566677788899999999999998865 55 6778888889999999999999999876 578
Q ss_pred CCCCchhHHHHHHHHHhcCChHHH
Q 037537 516 EPSNAVPYVMLANIYAASGKWEEV 539 (677)
Q Consensus 516 ~p~~~~~~~~l~~~y~~~g~~~~a 539 (677)
+|+|+.....+..+....+...+.
T Consensus 126 ~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 126 YPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00017 Score=61.99 Aligned_cols=111 Identities=10% Similarity=-0.049 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
.+......+.+.|++++|+..|.+.++.. |... +..+.-......+ -..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 34455667778888888888888877631 1100 0000000111111 123567788889
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+.|++++|+..+++. ++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 73 ~k~~~~~~A~~~~~~a---------------l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKA---------------LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhh---------------hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999876 6889999999999999999999999999999998774
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=8.8e-05 Score=63.00 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=90.3
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
......|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++.. +-+..+|..+..++...|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 4456678899999999999998764 467789999999999999999999999999853 334679999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCccC-hHHHHHHHHH--HhhcCChHHHHHH
Q 037537 450 KVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDL--LGRAGKLTDAERL 493 (677)
Q Consensus 450 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~ 493 (677)
++++|...++...+. .|+ ...+..+..+ +...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999875 454 4444444333 2333445555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.70 E-value=0.00035 Score=58.60 Aligned_cols=113 Identities=11% Similarity=-0.070 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
..+......+.+.|++.+|+..|.+.+.. -|... ...-.... .... .....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~---~~~~-----~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILL---DKKK-----NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHH---HHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHH---Hhhh-----hHHHHHHhhHHHH
Confidence 45666777888899999999999988763 11100 00000000 0010 1123467778889
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
|.+.|++++|++.+++. ++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 77 ~~~l~~~~~Al~~~~~a---------------l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKV---------------LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhcc---------------ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998865 6889999999999999999999999999999987764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.00018 Score=57.60 Aligned_cols=94 Identities=14% Similarity=-0.048 Sum_probs=74.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCCh---HHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL---TDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
..+++.+...+++++|.+.|+...+. -+.+..++..+..+|.+.++. ++|.++++++. +.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l---------------~~ 65 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL---------------PK 65 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT---------------TT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH---------------hc
Confidence 45778888999999999999999875 233678888888889876655 46888888763 33
Q ss_pred CCCC--chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 516 EPSN--AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 516 ~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+|.+ ..+|..|+.+|.+.|++++|.+.|+++.+.
T Consensus 66 ~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 66 GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333 347889999999999999999999999874
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00017 Score=62.35 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
..........|++++|.+.|.+.+.. .+... +..+ ..+.+ +...-..+... ....+..+...+.+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~-----l~~~-~~~~w--~~~~r~~l~~~-----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE--WRGPV-----LDDL-RDFQF--VEPFATALVED-----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST-----TGGG-TTSTT--HHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc-----cccC-cchHH--HHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 33445677889999999999998873 22211 0000 01111 11111122211 24567788999999
Q ss_pred cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccC
Q 037537 484 AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR-----DRGVQKK 554 (677)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~g~~~~ 554 (677)
.|++++|...++++ ++++|.+...|..|+.+|...|++++|++.|++++ +.|+.|.
T Consensus 80 ~g~~~~Al~~~~~a---------------l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 80 CGRASAVIAELEAL---------------TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp TTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCchHHHHHHHHH---------------HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 99999999999877 68899999999999999999999999999999874 4677654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.63 E-value=0.00021 Score=56.29 Aligned_cols=90 Identities=12% Similarity=-0.024 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMID 479 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 479 (677)
.+-.+...+.+.|++++|+..|++.++. .| +..+|..+..++.+.|++++|...|+...+. .| +...+..+..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~ 92 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAV 92 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHH
Confidence 3445666788888999999999998885 45 4778888888888899999999999888864 45 4778888888
Q ss_pred HHhhcCChHHHHHHHHh
Q 037537 480 LLGRAGKLTDAERLIEA 496 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~ 496 (677)
.|...|++++|.+.+++
T Consensus 93 ~y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 93 SHTNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 89999999999888876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.50 E-value=0.0011 Score=55.46 Aligned_cols=125 Identities=8% Similarity=-0.086 Sum_probs=77.9
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGI-GMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
..+..-...+.+.|++++|...|.+..+- +..... .+......... ....+|..+..++.+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~-----------~~~~~~~~~~~~~~~~~~------~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF-----------FIHTEEWDDQILLDKKKN------IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------TTTCTTCCCHHHHHHHHH------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CcchhhhhhHHHHHhhhh------HHHHHHhhHHHHHHHh
Confidence 34455677888999999999998764320 000000 00000000000 0123566677777788
Q ss_pred CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
|++++|...++.+.+. .| +...|..+..+|.+.|++++|...|++. ++++|+|+.+...+.
T Consensus 81 ~~~~~Al~~~~~al~~---~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a---------------l~l~P~n~~~~~~l~ 142 (153)
T d2fbna1 81 KDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKA---------------ASLNPNNLDIRNSYE 142 (153)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHH
T ss_pred cccchhhhhhhccccc---cchhhhhhHHhHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCHHHHHHHH
Confidence 8888888888887764 44 5677778888888888888888887765 577777776665554
Q ss_pred HH
Q 037537 528 NI 529 (677)
Q Consensus 528 ~~ 529 (677)
.+
T Consensus 143 ~~ 144 (153)
T d2fbna1 143 LC 144 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.0003 Score=60.25 Aligned_cols=84 Identities=5% Similarity=-0.053 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL 513 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 513 (677)
...+..+..++.+.|++++|...+..+.+. .| +...|..+..+|.+.|++++|.+.|++. +
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a---------------l 138 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKA---------------Q 138 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhh---hhhhhhHHHhHHHHHHHccCHHHHHHHHHHH---------------H
Confidence 345666777788899999999999998853 55 4778888999999999999999998876 6
Q ss_pred ccCCCCchhHHHHHHHHHhcCCh
Q 037537 514 QLEPSNAVPYVMLANIYAASGKW 536 (677)
Q Consensus 514 ~l~p~~~~~~~~l~~~y~~~g~~ 536 (677)
+++|+|..++..|..++......
T Consensus 139 ~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 139 EIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHH
Confidence 78888888888877766544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.48 E-value=0.0012 Score=56.09 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.|..+..+|.+.|++++|+..+++. ++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~a---------------l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKA---------------LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhh---------------hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4666778899999999999999876 6889999999999999999999999999999998764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.00087 Score=57.18 Aligned_cols=110 Identities=11% Similarity=0.083 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLL 481 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 481 (677)
+......+...|++++|++.|.++++. +..........+. . .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~----~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A----KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G----GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H----HhChhhHHHHHHHHHHH
Confidence 445566677888888888888877641 0000000010000 0 1223 355677788899
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+.|++++|+..+++. ++++|.++.+|..++.+|...|++++|+..|++..+.
T Consensus 88 ~~~~~~~~Ai~~~~~a---------------l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEA---------------LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHTTCHHHHHHHHHHH---------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhh---------------hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999876 6889999999999999999999999999999998874
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.42 E-value=0.048 Score=51.30 Aligned_cols=43 Identities=5% Similarity=-0.195 Sum_probs=21.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037537 412 QHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKY 457 (677)
Q Consensus 412 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 457 (677)
+.++..-....++.....| +....+++...+...++++.-++.
T Consensus 260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHH
Confidence 3444444444454444433 234566666666666665544433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.41 E-value=0.0072 Score=55.47 Aligned_cols=220 Identities=13% Similarity=0.026 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc-cChhHHHHHHHHHHh----cCChhHHHHHhccCCCC-CcchHHHHHHHHHh
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH-ANVFSFNVLLAAYAR----QLRIASARQLFDQIPQP-DLVSYNTLISAYAD 108 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~ 108 (677)
..+..|-..+-+.+++++|.+.|.+..+ .|...+-.|..+|.. ..+...|...+.....+ +...+..|...+..
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~ 82 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 82 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccc
Confidence 3444444455556666666666666554 444455455555544 34555555555544332 33334444333332
Q ss_pred ----CCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh----hHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 037537 109 ----CGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC----LIKQLHCLAIYCGFDHYASVNNSLLTCYSR---- 176 (677)
Q Consensus 109 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~li~~~~~---- 176 (677)
..+.+.|...++...+.|..+..... ........... .+...+..... ..+...+..|...|..
T Consensus 83 ~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~ 158 (265)
T d1ouva_ 83 GQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGT 158 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSS
T ss_pred ccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhhhhccCCCc
Confidence 34556666666665554421111110 11111111111 11122222111 2233444445555543
Q ss_pred cCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc----CCChH
Q 037537 177 NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQ----HREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS----LEDLV 248 (677)
Q Consensus 177 ~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~ 248 (677)
..+...+...++......+..++..+...|.. ..++++|+..|++..+.| +...+..|-..+.. ..+.+
T Consensus 159 ~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~ 235 (265)
T d1ouva_ 159 PKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEK 235 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCST
T ss_pred ccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHH
Confidence 23444555555544122244444444444443 456677777777776655 23333333333332 33566
Q ss_pred HHHHHHHHHHHhC
Q 037537 249 GGLQFHAHLIKSG 261 (677)
Q Consensus 249 ~a~~~~~~~~~~g 261 (677)
.|.+.+....+.|
T Consensus 236 ~A~~~~~kAa~~g 248 (265)
T d1ouva_ 236 QAIENFKKGCKLG 248 (265)
T ss_dssp THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc
Confidence 6777776666665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00041 Score=56.15 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS 518 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~ 518 (677)
.+...+...|++++|...|....+. .| +...+..+..+|.+.|++++|.+.++++ ++++|+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------l~l~~~ 70 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKA---------------IEVGRE 70 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHH---------------HHhCcc
Confidence 3455666777777777777777754 33 4666777777778888888888777765 344444
Q ss_pred Cc-------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 519 NA-------VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 519 ~~-------~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
++ .+|..+...+...|++++|++.+++...
T Consensus 71 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 43 3566777888889999999999987654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.35 E-value=0.0014 Score=55.77 Aligned_cols=94 Identities=9% Similarity=0.014 Sum_probs=72.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccC
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLE 516 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~ 516 (677)
.|+.+..++.+.|++++|...++...+. -+.+...|..+..+|...|++++|.+.|+++ ++++
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a---------------l~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKV---------------LEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhc--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhC
Confidence 3555666778899999999999998865 2335778888889999999999999999876 5888
Q ss_pred CCCchhHHHHHHHHHhcCChHH-HHHHHHHHH
Q 037537 517 PSNAVPYVMLANIYAASGKWEE-VATIRRLMR 547 (677)
Q Consensus 517 p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~ 547 (677)
|+++.++..+..+....+...+ ..+++..|-
T Consensus 129 P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 129 PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9998888888888777665543 445555553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0012 Score=53.15 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--------hHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--------GEHY 474 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~~~ 474 (677)
+-.+...|.+.|++++|+..|++.++.+ +.+...+..+..++.+.|++++|...++.+.+. .|+ ..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV---GRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh---CcccHHHHHHHHHHH
Confidence 4456778889999999999999999864 445788888999999999999999999998754 222 2467
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+.+.+...+++++|.+.+++.
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 77888888999999999999765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.04 E-value=0.027 Score=51.34 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=37.2
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc----CCChHHHHHHHHHHHHhC
Q 037537 197 VSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS----LEDLVGGLQFHAHLIKSG 261 (677)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g 261 (677)
..|..|...+.+.+++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 356666677777888888888888887765 33333333333332 345555655555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.0027 Score=54.41 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=72.8
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC--C-----------------------CcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPE--H-----------------------NTVSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~--~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
.........|++++|.+.|.+... + ....+..+...+...|++++|+..++++++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 95 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 95 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344556778888888887775432 1 112467778888888889999998888888
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCccChHH
Q 037537 429 TNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD----MFGFEPEGEH 473 (677)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 473 (677)
.. +-+...|..++.++...|+.++|++.|+.+.+ ..|+.|+..+
T Consensus 96 ~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 96 EH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 53 44577888888888888998888888887744 3488888665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00011 Score=75.45 Aligned_cols=117 Identities=9% Similarity=-0.035 Sum_probs=63.8
Q ss_pred cccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 037537 364 IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHN-TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSV 441 (677)
Q Consensus 364 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 441 (677)
++++....+..+...+.+.|+.++|...+.....++ ..++..+...+...|++++|+..|++..+. .|+ ..+|+.+
T Consensus 115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~L 192 (497)
T d1ya0a1 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQL 192 (497)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHH
T ss_pred CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHH
Confidence 334435566777777778888888777666544332 235667777888888888888888888874 454 5788888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
...+...|+..+|...|.+.... -.|-...+..|..+|.+.
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHh
Confidence 88888888888888888887753 345566777777766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.91 E-value=0.00093 Score=55.27 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=78.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----------cCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----------TGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
|-+.+.+++|+..|+..++.. +.|..++..+..++.. .+.+++|...|+.+.+. .| +...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhHH
Confidence 344556788888888887743 3335566666655553 34457888888888754 55 466777787
Q ss_pred HHHhhcC----ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 479 DLLGRAG----KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 479 ~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
.+|...| +..++...+++. ....+++++++|++...+..|... ..|.+++.+..+.|+
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A--------~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLA--------TQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHH--------HHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHcccchhhHHHHHHhHHHh--------hhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 7776654 344444444433 344556689999988777776555 356666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.79 E-value=0.008 Score=50.04 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=63.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccC----------hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPE----------GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
....|++++|.+.|++..+...-.|+ ...|+.+..+|.+.|++++|.+.+++.. ....+..+
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al--------~~~~~~~~ 90 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL--------HYFNRRGE 90 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh--------hccccccc
Confidence 34456666666666665543222221 3467788889999999999998887752 11122223
Q ss_pred cCCCC----chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSN----AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..|++ ..+|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322 235778899999999999999999997653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.69 E-value=0.0017 Score=59.69 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 489 (677)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45799999999999999964 555788999999999999999999999999865 665 3444445555544444443
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
+..-..... +..+|++...+......+...|++++|.+.+++..+..
T Consensus 83 a~~~~~~~~--------------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAK--------------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEE--------------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhh--------------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 322211110 12234444556677788999999999999999987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0011 Score=67.75 Aligned_cols=110 Identities=8% Similarity=0.006 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037537 382 CGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYF 458 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 458 (677)
.+.++.|...+....+ ++...|..+...+.+.|+.++|...++...... | ..++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 4456666666665433 455678888888999999999998887766421 2 357788888999999999999999
Q ss_pred HHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 459 SMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 459 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
++..+. .|+ ...|+.|..+|...|+..+|...|.+.
T Consensus 176 ~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 176 RHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999865 665 678999999999999999999999876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.0081 Score=45.04 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=53.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCC----ccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDMFGF----EPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~----~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
.+...+.+.|++++|...|++..+...- .++ ..++..|..+|.+.|++++|.+.++++ ++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a---------------L~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL---------------LE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH---------------HH
Confidence 4555666777777777777776654211 112 467888999999999999999999876 68
Q ss_pred cCCCCchhHHHHH
Q 037537 515 LEPSNAVPYVMLA 527 (677)
Q Consensus 515 l~p~~~~~~~~l~ 527 (677)
++|+++.++..+.
T Consensus 75 l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 75 LDPEHQRANGNLK 87 (95)
T ss_dssp HCTTCHHHHHHHH
T ss_pred hCcCCHHHHHHHH
Confidence 8899888777653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.24 E-value=0.0028 Score=52.22 Aligned_cols=94 Identities=9% Similarity=0.107 Sum_probs=67.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHH---HHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDA---ERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
|-+.+.+++|...|+...+. .| +...+..+..+|.+.+++..+ .+.+++. ....+++++++|+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~A--------i~~~~kAl~l~P~~~ 75 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEA--------ITKFEEALLIDPKKD 75 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH--------HHHHHHHHHHCTTCH
T ss_pred HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH--------HHHHHHHHHhcchhh
Confidence 44567799999999999875 56 567788888777765444322 2222221 334456689999999
Q ss_pred hhHHHHHHHHHhcCC-----------hHHHHHHHHHHHhC
Q 037537 521 VPYVMLANIYAASGK-----------WEEVATIRRLMRDR 549 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~-----------~~~a~~~~~~m~~~ 549 (677)
.+|..++.+|...|+ +++|.+.|++..+.
T Consensus 76 ~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 76 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 999999999987664 67888888887653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.16 E-value=0.011 Score=49.12 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=66.6
Q ss_pred hHHHH--HHHHHHcCChHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---
Q 037537 402 SLNSM--IAGYAQHGIGMEALRLFEWMLETNI-PPT----------NITFVSVLSACAHTGKVAEGQKYFSMMKDMF--- 465 (677)
Q Consensus 402 ~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~-~p~----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 465 (677)
+|..+ ...+.+.|++++|++.|++.++..- .|+ ..+|+.+..++...|++++|...++...+.+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 3345566888888888888876210 121 3567788888889999999988888876532
Q ss_pred -CCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 466 -GFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 466 -~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...++ ...+..+..+|.+.|++++|.+.|++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11222 224666788999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.74 E-value=0.0084 Score=54.80 Aligned_cols=117 Identities=16% Similarity=0.048 Sum_probs=84.0
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cC-hhHHHHHHHHHHhcCChhHH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--AN-VFSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 84 (677)
...+.|++++|+..++..++.. |.+...+..+...++..|++++|.+.++...+ |+ ...+..+...+...+..+++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4557899999999999999998 88999999999999999999999999999988 33 33444444444444444433
Q ss_pred HHHhccC--C-CC-CcchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 85 RQLFDQI--P-QP-DLVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 85 ~~~f~~m--~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
..-...- . .| +...+......+.+.|+.++|.+++++..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2222111 1 12 1223334456788889999999999998765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.073 Score=39.45 Aligned_cols=70 Identities=7% Similarity=-0.063 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 471 GEHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...+--+...+.+.|++++|...|++... .|.. ....+....++..|+.+|.+.|++++|+..+++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~---------~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG---------EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---------CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh---------hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34445678889999999999999987520 0000 0112233567899999999999999999999998774
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.29 E-value=1.2 Score=33.79 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc----------------ChHHHH
Q 037537 412 QHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP----------------EGEHYS 475 (677)
Q Consensus 412 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----------------~~~~~~ 475 (677)
-.|..++..++..+.... .+..-|+-++--....-+-+-..++++.+-+.|.+.| +.+...
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd 90 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 90 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence 345566666666665542 1222333333222333333444444444443333333 234445
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
..++.+.++|+-+.-.++.+++ ++-+..++....-+.++|-+-|...++-+++.+.-++|++
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l---------------~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREI---------------LKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH---------------C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHH---------------HhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 5556666666666666665553 3333346788999999999999999999999999999985
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.08 E-value=1.5 Score=33.38 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=59.7
Q ss_pred ccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 381 KCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
+|+++......+-.+.. +....+.-+....++|+-++-.++++.+.+.+ +|++.....+.+||.+.|...++..++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 56666666665555433 23345556777788888888888888877654 77777888888888888888888888888
Q ss_pred hHHhcCCc
Q 037537 461 MKDMFGFE 468 (677)
Q Consensus 461 m~~~~~~~ 468 (677)
+-+. |++
T Consensus 146 ACe~-G~K 152 (161)
T d1wy6a1 146 ACKK-GEK 152 (161)
T ss_dssp HHHT-TCH
T ss_pred HHHH-hHH
Confidence 8776 654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.63 E-value=1.1 Score=35.04 Aligned_cols=112 Identities=12% Similarity=0.011 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----cCChHHH
Q 037537 415 IGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLTDA 490 (677)
Q Consensus 415 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 490 (677)
++++|+++|++..+.| .|. ....+ +.....+.++|.++++...+. | ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g-~~~--a~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMF--GCLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HHHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chh--hhhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 5778888998888877 222 22222 234456788999999888765 4 34444555555543 4578889
Q ss_pred HHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 037537 491 ERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA----SGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~~ 552 (677)
.++|++.... .++.+...|..+|.. ..+.++|.+++++..+.|..
T Consensus 79 ~~~~~~aa~~-----------------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGL-----------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhcc-----------------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9998876321 345677788888876 45789999999998888753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.35 E-value=2.1 Score=32.66 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHhcc---CCHHHHHHHHHHhHHhcCCcc-C-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHH
Q 037537 433 PTNITFVSVLSACAHT---GKVAEGQKYFSMMKDMFGFEP-E-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALK 507 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 507 (677)
|...|--....++.++ .++++|..+++.+.+. .| + ...+--|.-+|.+.|++++|.+.++.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~---------- 99 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL---------- 99 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH----------
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------
Confidence 4444433344444443 5677899999988764 34 3 245556677889999999999999876
Q ss_pred HHHHHhccCCCCchh
Q 037537 508 AANHFLQLEPSNAVP 522 (677)
Q Consensus 508 ~~~~l~~l~p~~~~~ 522 (677)
++++|.|..+
T Consensus 100 -----L~ieP~n~qA 109 (124)
T d2pqrb1 100 -----FEHERNNKQV 109 (124)
T ss_dssp -----HHHCTTCHHH
T ss_pred -----HccCCCcHHH
Confidence 6778876544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.28 E-value=2.3 Score=30.51 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 416 GMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
.-++..-++.+....+.|++....+.|.||.+.+++..|.++|+..+.+.| ++...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 335566667777778899999999999999999999999999999987633 45667777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=83.89 E-value=6 Score=30.33 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH----cCCCHHHH
Q 037537 211 EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK----CSGDMRDC 286 (677)
Q Consensus 211 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~~A 286 (677)
++++|++.|++..+.|- ......+ +.....+.+++.+.+....+.| ++.....|-.+|.. ..+ .++|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d-~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD-LRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-HHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchh-hHHH
Confidence 34555555555555442 1111111 1223345555666665555554 23333444444443 122 5666
Q ss_pred HHHHhhCCC-CChhhHHHHHhhhcc----cCCCHHHHHHHHHHHhhcC
Q 037537 287 MKVFEEIPQ-PDLVLWNTMISGYSQ----KEEYSDQALGCFKKLNRVG 329 (677)
Q Consensus 287 ~~~f~~~~~-~~~~~~~~li~~~~~----~~~~~~~A~~l~~~m~~~g 329 (677)
.++|++..+ -+..+...|-..|.. . .+.++|+++|++..+.|
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~-~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccC-CCHHHHHHHHHHHHHCC
Confidence 666655432 233333333333332 2 45677777777766655
|