Citrus Sinensis ID: 037568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQHEDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSAQH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEcccccccccHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHcccccccccEEEcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHccccccccccEEHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHHEEEEEEEEEHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEEcccccccccccccccccEEEEcccccccccccccccEEEEEccccccccEcEccccccccHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdvrslglirdtetdqypLLMEQVHrhtdrdhiiditttddasssssydeqphrmaspqhedipststgvpsyhssssssnrlnnrssfmmrgdgygrrrrsplnsglwISVELIVTVSQIIASIVVLSlsrnenpqaplFAWIVGYASGCVATLPILYWRFrnrhqgidsdstqlrqgsslptppeptssytaisanqasdeennrstetetgngqnalnfggrlNGLVDHFKMALDCFFAVWFVVGNVwifgghsspsdapkLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGiredysqtrgataetinalptykfkskkngnlndqdnsggteggvlaagtekermisgeDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLkinascplckseigdsssplvqdsaqh
Flexible Loop (DISEMBL)
mdvrslglirdtetdqyPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQHEDIPSTSTGVPsyhssssssnrlnnrSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGidsdstqlrqgsslptppeptssYTAISANQASDEENNRSTetetgngqnaLNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRgataetinalptykfkskkngnlndqdnsggtEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCkseigdsssplvqdsaqh
Low Complexity Region (SEG)
MDVRSLGLIRDTETDQYPLLMEQVhrhtdrdhiiditttddasssssYDEQPHRMASPQHEDIPSTSTGVPSYHssssssnrlnnrssFMMrgdgygrrrrSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGsslptppeptssytAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSAQH
Disordered region (IsUnstruct)
****************YPLLMEQVHR****DHIIDI********************************************************************NSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNR******************************************************LNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTY*********************************ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCK*****************
Disordered Region (DISOPRED)
*****************************************************************************************************SPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRH***************************************************NALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGI*********************KF********************************SGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCK*****************
Disordered Region (DISEMBL)
MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTT*******************************************LNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGID*********************YTAIS*****************GNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI**************
Disordered Region (DISPRO)
****************YPLLMEQVHRHTDRDHIIDITT****************************************************M******RRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRH******************************************************NFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKN************EGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI**************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQHEDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSAQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.806	0.874	0.302	9e-38
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.773	0.801	0.313	2e-34
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.635	0.706	0.346	4e-32
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.628	0.740	0.269	1e-28
Q5SSZ7	913	E3 ubiquitin-protein liga	yes	no	0.304	0.141	0.324	4e-12
Q9LSW9	375	RING-H2 finger protein AT	no	no	0.222	0.250	0.348	5e-12
Q9LT17	340	E3 ubiquitin ligase BIG B	no	no	0.191	0.238	0.317	3e-11
P93823	381	RING-H2 finger protein AT	no	no	0.210	0.233	0.336	4e-11
Q4KLR8	784	E3 ubiquitin-protein liga	N/A	no	0.304	0.164	0.311	2e-10
E9QAU8	347	RING finger protein 165 O	no	no	0.222	0.270	0.327	2e-10

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  158 bits (399), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 185/397 (46%), Gaps = 56/397 (14%)

Query: 28  TDRDHIIDIT--TTDDASSSSSYDEQPHRMASPQHEDIPSTSTGVPSYHSSSSSSNRLNN 85
           ++ D IID T       + + S DE+    ++P H           +     + S R+  
Sbjct: 27  SNSDGIIDTTPFLPPTVTRTISVDEE----SNPIHRSARRQGLREAARFLRHAGSRRMMR 82

Query: 86  RSSFMMR---GDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFA 142
             S ++R    +    R+     S   + ++++  ++ +   + VL LSR+E P  PL  
Sbjct: 83  EPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRV 142

Query: 143 WIVGYASGC---VATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSSYTAISANQ 199
           W+VGY   C   +A + + Y R R R    D   + L   SS          Y +++  +
Sbjct: 143 WVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSS--------QQYVSLAQLE 194

Query: 200 ASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWI-FGGHSS 258
              E +N +   E+ N                        F  +W+++G  W+  GG + 
Sbjct: 195 DRGETSNPAKHLESANTM----------------------FSFIWWIIGFYWVSAGGQTL 232

Query: 259 PSDAPKLYRLCIVFL----TFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGAT 314
            SD+P+LY LCI+FL     F     A+  ++   +CCCLPCII++L    D     GA+
Sbjct: 233 SSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVAD---QEGAS 289

Query: 315 AETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEK--ERMISGEDAVCCICLAKY 372
              I+ +P ++F   K GN+  +  SG   G +   GT+   ER +S EDA CCICL +Y
Sbjct: 290 KNDIDQMPKFRFT--KTGNV--EKLSGKARGIMTECGTDSPIERSLSPEDAECCICLCEY 345

Query: 373 VDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
            D  ELREL C+H FH  C+DKWL IN+ CPLCK  I
Sbjct: 346 EDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 175/351 (49%), Gaps = 24/351 (6%)

Query: 76  SSSSSNRLNNRSSFMMR---GDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSR 132
           S +SS R+    S ++R    +    R+     S   + ++++  ++ +  +  +L +SR
Sbjct: 64  SRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSR 123

Query: 133 NENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSSY 192
            E+P  PL  W++GYA  CV  +  +          ++      R+ +   T   P S  
Sbjct: 124 KEHPIMPLRVWLLGYALQCVLHMVCV---------CVEYRRRNRRRTNRTTTTTPPRSRS 174

Query: 193 TAISANQASDEENNRSTETETGNGQNAL-NFGGRLNGLVDHFKMALDCFFAVWFVVGNVW 251
           ++ S++ +S EE    +   +G    +L +     + +  H + A   F  +W+++G  W
Sbjct: 175 SSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYW 234

Query: 252 I-FGGHSSPSDAPKLYRLCIVFLTFSCIGY----AMPFILCATICCCLPCIISVLGIRED 306
           +  GG     ++P++Y L IVFL F         A+  ++   +CCCLPCII+VL    D
Sbjct: 235 VSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAD 294

Query: 307 YSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLA-AGTEK--ERMISGEDA 363
                GA+ E I  L  +KF+   + N +  D + GT  G++   GT+   E  +  EDA
Sbjct: 295 ---QEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDA 351

Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414
            CCICL+ Y D  ELREL C H FH  CVDKWL INA+CPLCK  I  SS+
Sbjct: 352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSN 402

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 144/294 (48%), Gaps = 25/294 (8%)

Query: 131 SRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTS 190
           S +ENP  PL  WI+GY   C+  +  +   +R R+     D +     SS  +      
Sbjct: 96  SSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSS-SSSSSSSSSMD 154

Query: 191 SYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNV 250
               +  ++ SDE      + E  N           N    H + A      +W+V+G  
Sbjct: 155 EEEGLGLSRNSDERYLELGQLENEN-----------NSFAKHLESANTMISFIWWVIGFY 203

Query: 251 WIF-GGHSSPSDAPKLYRLCIVFLTFSCIGY----AMPFILCATICCCLPCIISVLGIRE 305
           W+  GG      +P+LY LCIVFL F         A+  ++   +CCCLPCII+VL    
Sbjct: 204 WVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYA-- 261

Query: 306 DYSQTRGATAETINALPTYKFKSKKN--GNLNDQDNSGGTEGGVLA-AGTEK--ERMISG 360
             ++  GA+ E I+ L  +KF+   +   +  D++   G  GGV+   GT+   E  +  
Sbjct: 262 -VAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPH 320

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414
           EDA CCICL+ Y D+ ELREL C H FH  CVDKWL INA+CPLCK  I  SS+
Sbjct: 321 EDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSN 374

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 139/308 (45%), Gaps = 42/308 (13%)

Query: 110 ISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPIL---YWRFRNRH 166
           ++ +++   + ++AS V+L  +  E P  P+  WI  Y   C+  + ++   YWR  +  
Sbjct: 78  VAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTR 137

Query: 167 QGIDSDSTQLRQGSSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRL 226
           +  D +S      +              I  +   D ++N +T +     ++       +
Sbjct: 138 RARDLESYDHEDYN--------------IEYDYEQDSDDNSTTYSFVKRCES-------I 176

Query: 227 NGLVDHFKMALDCFFAVWFVVGNVWIF-GGHSSPSDAPKLYRLCIVFLT----FSCIGYA 281
           N ++            +W+++G  W+  GG     +AP LY L ++FL     F+     
Sbjct: 177 NTVISF----------IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVV 226

Query: 282 MPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSG 341
           +  ++   +CCCLPCII++L      + T G +   +  LP YKFK+  +   N      
Sbjct: 227 LACLVGIALCCCLPCIIALL---YAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGK 283

Query: 342 GTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINAS 401
                +       ER +  EDA CCICL+ Y D  EL  L C+H FH  C+ KWLK+ A+
Sbjct: 284 MVPIPINGLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRAT 343

Query: 402 CPLCKSEI 409
           CPLCK  I
Sbjct: 344 CPLCKYNI 351

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 67/151 (44%), Gaps = 22/151 (14%)

Query: 259 PSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETI 318
           P   P  Y    +FL F        F++ + +C  L   I +   R   S  R A  + +
Sbjct: 206 PPRQPTEYFDMGIFLAF--------FVVVSLVCLILLVKIKLKQRRSQNSMNRLAV-QAL 256

Query: 319 NALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDEL 378
             + T KF SK  G           EG   A  T    + SG  + C ICL KY+D +EL
Sbjct: 257 EKMETRKFNSKSKGR---------REGSCGALDT----LSSGSTSDCAICLEKYIDGEEL 303

Query: 379 RELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           R + C+H FH  CVD WL  + +CP C+  I
Sbjct: 304 RVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 334

Mus musculus (taxid: 10090)

>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 15/109 (13%)

Query: 309 QTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCIC 368
           ++RG     I A+P +KFK + + N            GV     E+E     ++  C +C
Sbjct: 95  RSRGLDESVIRAIPIFKFKKRYDQN-----------DGVFTGEGEEEEEKRSQE--CSVC 141

Query: 369 LAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEIG-DSSSP 415
           L+++ D+++LR +  CSH+FH+DC+D WL+ NA+CPLC++ +  D+S P
Sbjct: 142 LSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFP 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 26/107 (24%)

Query: 308 SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCI 367
           +++RG +A+TI +LP+ ++K   N N                          G +  C I
Sbjct: 257 TESRGLSADTIASLPSKRYKEGDNQN--------------------------GTNESCVI 290

Query: 368 CLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414
           C   Y DD++L  L C H +H +C++ WLKIN  CP+C +E+  S+S
Sbjct: 291 CRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVSTSTS 337

E3 ubiquitin-ligase probably involved in organ size regulation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 21/110 (19%)

Query: 301 LGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISG 360
           L I   +   RG     I A+P +KFK +                  + AG E +   S 
Sbjct: 90  LMIYSPHEVNRGLDESAIRAIPVFKFKKRD-----------------VVAGEEDQSKNSQ 132

Query: 361 EDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEI 409
           E   C +CL ++ +D++LR +  C HVFH+DC+D WL+ NA+CPLC++ +
Sbjct: 133 E---CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 22/151 (14%)

Query: 259 PSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETI 318
           P   P  Y    +FL F        F++ + +C  L   I +   R   S  R A  + +
Sbjct: 118 PPRQPTEYFDMGIFLAF--------FVVVSLVCLILLIKIKLKQRRSQNSMNRMAV-QAL 168

Query: 319 NALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDEL 378
             + T KFK+K  G ++ + + GG +            + S   + C ICL KY+D +EL
Sbjct: 169 EKMETRKFKAK--GKVSREGSCGGLD-----------TLSSSSISDCAICLEKYIDGEEL 215

Query: 379 RELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           R + C+H FH  CVD WL  N +CP C+  I
Sbjct: 216 RVIPCTHRFHKRCVDPWLLQNHTCPHCRHNI 246

E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination and subsequent degradation of Wnt receptor complex components.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 25/119 (21%)

Query: 302 GIREDYSQ-----------TRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAA 350
            +RE Y +           TRGA   TI    T+  K KK      QD+ G  + G  + 
Sbjct: 235 AVRESYEELLQLEDRLGNVTRGAVQNTIERF-TFPHKYKKR---RPQDSKGKKDEGEESD 290

Query: 351 GTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
             EK          C ICL+   D +++R L C H+FH  CVD+WL ++  CP+C+ +I
Sbjct: 291 TDEK----------CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
356550569	419	PREDICTED: E3 ubiquitin-protein ligase A	0.971	0.980	0.703	1e-163
356555922	424	PREDICTED: E3 ubiquitin-protein ligase A	0.971	0.969	0.703	1e-159
255552959	421	ring finger protein, putative [Ricinus c	0.959	0.964	0.712	1e-158
359482955	416	PREDICTED: E3 ubiquitin-protein ligase A	0.919	0.935	0.667	1e-151
224092390	406	predicted protein [Populus trichocarpa]	0.957	0.997	0.631	1e-141
224143048	434	predicted protein [Populus trichocarpa]	0.955	0.930	0.625	1e-137
255551132	437	ring finger protein, putative [Ricinus c	0.962	0.931	0.632	1e-137
359476391	421	PREDICTED: E3 ubiquitin-protein ligase A	0.957	0.961	0.652	1e-136
15220126	407	RING/U-box domain-containing protein [Ar	0.936	0.972	0.599	1e-135
297842825	401	zinc finger family protein [Arabidopsis	0.936	0.987	0.596	1e-133

>gi|356550569|ref|XP_003543658.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/415 (70%), Positives = 335/415 (80%), Gaps = 4/415 (0%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQH 60
           MDV SLG   +T+TDQ+PLLMEQ        H+IDIT   +A ++S  ++Q   M   Q+
Sbjct: 1   MDVTSLGSNSNTQTDQHPLLMEQPETRNGHQHVIDITRNGEALTTSYRNDQHSEMHLTQN 60

Query: 61  EDIPSTSTGVPSYHSSSSSSNRLNNR-SSFMMRGDGYGRRRRSPLNSGLWISVELIVTVS 119
           +D P+      S+ ++SSS+ RLN+R S+ + RGDGYG R RSPLNSGLWISVEL+VTVS
Sbjct: 61  QDQPAGDAQDSSHQTTSSSAPRLNSRNSASLRRGDGYGHRGRSPLNSGLWISVELVVTVS 120

Query: 120 QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQG 179
           QIIASIVVLSLSRNENPQAPLFAWIVGY SGCVATLPILYWRFRNR+Q  + D++Q  QG
Sbjct: 121 QIIASIVVLSLSRNENPQAPLFAWIVGYGSGCVATLPILYWRFRNRNQSNEQDTSQASQG 180

Query: 180 SSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDC 239
           SS   PP+   SYT+I  +  SDEEN  +T++ + N      F  RLNGLVDHFKMALDC
Sbjct: 181 SSGSNPPD--RSYTSIYVSHVSDEENGHATQSASRNTIMPGAFTSRLNGLVDHFKMALDC 238

Query: 240 FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 299
           FFAVWFVVGNVWIFGGH+SPSDAP+LYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS
Sbjct: 239 FFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 298

Query: 300 VLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQD-NSGGTEGGVLAAGTEKERMI 358
           VLGIRED+SQ RGAT E+INALP +KFK K N N +DQD NS   EGG+LAAGTEKERMI
Sbjct: 299 VLGIREDFSQNRGATVESINALPIFKFKLKNNENGDDQDANSAIDEGGILAAGTEKERMI 358

Query: 359 SGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
           SGEDAVCCICLAKY DDDELREL CSHVFHV+CVDKWLKINA+CPLCK+E+G S+
Sbjct: 359 SGEDAVCCICLAKYADDDELRELPCSHVFHVECVDKWLKINATCPLCKNEVGTSN 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555922|ref|XP_003546278.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/415 (70%), Positives = 333/415 (80%), Gaps = 4/415 (0%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQH 60
           MDV SLG   +T+TDQ+PLLMEQ   H    H+IDIT   +A ++SS ++Q   M  PQ+
Sbjct: 1   MDVTSLGSNSNTQTDQHPLLMEQPETHNGHQHVIDITRNGEALTTSSRNDQYSEMHLPQN 60

Query: 61  EDIPSTSTGVPSYHSSSSSSNRLNNRSSF-MMRGDGYGRRRRSPLNSGLWISVELIVTVS 119
           ED  +      S+ +SSSS+ RLN+R+S  + RG+GYG   RSPLNSGLWISVEL+VTVS
Sbjct: 61  EDQAAGDAQNSSHQTSSSSAPRLNSRNSASLRRGEGYGHHGRSPLNSGLWISVELVVTVS 120

Query: 120 QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQG 179
           QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNR+Q  + D++Q  QG
Sbjct: 121 QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDTSQASQG 180

Query: 180 SSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDC 239
           SS   PP+   SY +I  +  SDEEN  +T + + N      F  RLNGLVDHFKMALDC
Sbjct: 181 SSGSNPPD--RSYNSIHVSHVSDEENGHATRSASRNTIMPGAFTSRLNGLVDHFKMALDC 238

Query: 240 FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 299
           FFAVWFVVGNVWIFGGH+SPSDAP+LYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS
Sbjct: 239 FFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 298

Query: 300 VLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQD-NSGGTEGGVLAAGTEKERMI 358
           VLGIRED+SQ RGAT E+INALP +KFK K N N +DQD N+   EGG+LAAGTEKERMI
Sbjct: 299 VLGIREDFSQNRGATVESINALPIFKFKLKNNENGDDQDVNAAIDEGGILAAGTEKERMI 358

Query: 359 SGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
           SGEDAVCCICLAKY DDDELREL CSH FHV CVDKWLKINA+CPLCK+E+G S+
Sbjct: 359 SGEDAVCCICLAKYADDDELRELPCSHFFHVMCVDKWLKINATCPLCKNEVGTSN 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552959|ref|XP_002517522.1| ring finger protein, putative [Ricinus communis] gi|223543154|gb|EEF44686.1| ring finger protein, putative [Ricinus communis]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 295/414 (71%), Positives = 332/414 (80%), Gaps = 8/414 (1%)

Query: 12  TETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQHEDIPSTSTGVP 71
           T+ DQYPLLME++  H D +HII IT  +D SS+SS++ QP  +  P HED     +   
Sbjct: 14  TQIDQYPLLMERMDSHDDHEHIISITGNEDGSSNSSHNGQPPDIDLPYHED----RSSSA 69

Query: 72  SYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLS 131
              SSSS +   +  S+F  RGDGY RRRRSP NSGLWIS+EL VTV QIIASIVVLSLS
Sbjct: 70  HQSSSSSLNRLNSRNSTFARRGDGYDRRRRSPFNSGLWISIELFVTVGQIIASIVVLSLS 129

Query: 132 RNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSS 191
           RNENPQAPLFAW+VGYASGCVATLPILYWRFRNR+Q    DS Q  QGSS   PP+ TSS
Sbjct: 130 RNENPQAPLFAWVVGYASGCVATLPILYWRFRNRNQSGQQDSHQSHQGSSQNNPPD-TSS 188

Query: 192 YTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVW 251
           YTAIS  QAS+E+N RS E    NGQ       RLNGL+DHFKMALDCFFAVWFVVGNVW
Sbjct: 189 YTAISVTQASEEDNFRS-ELAIANGQTGRPLSSRLNGLMDHFKMALDCFFAVWFVVGNVW 247

Query: 252 IFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTR 311
           IFGGHS+P+DAPKLY+LCIVFLTFSCIGYAMPFILCATICCCLPCIIS+LG RED+SQTR
Sbjct: 248 IFGGHSTPTDAPKLYKLCIVFLTFSCIGYAMPFILCATICCCLPCIISLLGFREDFSQTR 307

Query: 312 GATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAK 371
           GAT E+IN+LP YKFK +K+ ++ND DNSG  EGGVLA GTEKER ISGEDA+CCICL K
Sbjct: 308 GATTESINSLPIYKFKLQKSESVNDHDNSGTGEGGVLAEGTEKERAISGEDAICCICLNK 367

Query: 372 YVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS--PLVQDSAQH 423
           Y D+DELREL CSHVFHVDCVDKWLKINASCPLCKSE+G+SSS  P  +DS+Q 
Sbjct: 368 YADNDELRELPCSHVFHVDCVDKWLKINASCPLCKSELGESSSAQPSARDSSQQ 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482955|ref|XP_002280466.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera] gi|297743322|emb|CBI36189.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/427 (66%), Positives = 325/427 (76%), Gaps = 38/427 (8%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQH 60
           M + SL     ++T +YPLLME+   H DR+HIIDIT  DDASSSSS+D+    M  PQH
Sbjct: 1   MAIPSLEPHSGSQTYKYPLLMERTENHGDREHIIDITRNDDASSSSSHDDHHPVMNPPQH 60

Query: 61  EDIPSTSTGVPSYHSSSSSSNRLNNR-SSFMMRGDGYGRRRRSPLNSGLWISVELIVTVS 119
           E+ PS+ST  P+   + +SSNRLN+R SSFM R DGY RRRRSPLNSGLWISVEL+VTVS
Sbjct: 61  EERPSSSTQTPT---NQTSSNRLNSRNSSFMRRSDGYSRRRRSPLNSGLWISVELVVTVS 117

Query: 120 QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQG 179
           QIIASIVVLSLSR+ENP+APLFAW+VGYASGC ATLPILYWR+R R+Q            
Sbjct: 118 QIIASIVVLSLSRHENPRAPLFAWVVGYASGCFATLPILYWRYRTRNQ------------ 165

Query: 180 SSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDC 239
                          IS NQAS+     +    T   +    F  R +G+VDHFKMALDC
Sbjct: 166 --------------TISVNQASE-----TAGAATRRSRFVGIFRMRFSGMVDHFKMALDC 206

Query: 240 FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 299
           FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS
Sbjct: 207 FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 266

Query: 300 VLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQD-NSGGTEGGVLAAGTEKERMI 358
           +LG RED SQTRGA  E+I+ALPTYKFK KKNG+++DQ+ NSG  EGGVLAAGTEKER I
Sbjct: 267 ILGFREDLSQTRGAAPESIDALPTYKFKLKKNGDVDDQEVNSGAGEGGVLAAGTEKERAI 326

Query: 359 SGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS--SPL 416
           SGEDAVCCICLAKY D++ELREL C H FHV+CVDKWLKINA CPLCK E+G +S  SP 
Sbjct: 327 SGEDAVCCICLAKYADNEELRELPCCHFFHVECVDKWLKINALCPLCKFEVGGTSGASPN 386

Query: 417 VQDSAQH 423
              +++H
Sbjct: 387 ATSTSEH 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092390|ref|XP_002309588.1| predicted protein [Populus trichocarpa] gi|222855564|gb|EEE93111.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/413 (63%), Positives = 314/413 (76%), Gaps = 8/413 (1%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQH 60
           MDV S  L  +++TD +PLLME+        HIIDI    +   S S+D     + +  H
Sbjct: 1   MDVPSTELHSESQTDTFPLLMERPENLNSSAHIIDIPRNIEVPGSPSHDRISSGLEASSH 60

Query: 61  EDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQ 120
           ED PS+    PS   S+S SN  N+RSS ++R     RRRRSPLNSGLWISVEL++T+SQ
Sbjct: 61  EDRPSSGVRAPSTQPSTSLSNGTNSRSSSLIRRGEA-RRRRSPLNSGLWISVELVLTLSQ 119

Query: 121 IIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGS 180
           I+ASIVVLS+SR+E+P APLFAWIVGYASGCVATLP+LYWR+R R+Q ++ DS Q  QGS
Sbjct: 120 IVASIVVLSVSRHEHPHAPLFAWIVGYASGCVATLPLLYWRYRYRNQSLEQDSAQNHQGS 179

Query: 181 S-LPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDC 239
           + +  P  P S    +S ++ S+ ++ RS  T     QNA+    RL  LV++FKMALDC
Sbjct: 180 AHINVPAGPFS----LSVSRNSESDDRRSATTSPRGSQNAV-LNARLKVLVEYFKMALDC 234

Query: 240 FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 299
           FFAVWFVVGNVWIFGGHSS  +AP LYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS
Sbjct: 235 FFAVWFVVGNVWIFGGHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 294

Query: 300 VLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMIS 359
           VLG RED +QTRGAT E+I+ALPTYKFK  KN N  D  ++G ++GGV+AAGTEKER+IS
Sbjct: 295 VLGYREDLTQTRGATTESIDALPTYKFKLIKNRNGED-SSAGASDGGVVAAGTEKERVIS 353

Query: 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412
           GEDAVCCICLAK+ ++DELREL CSH FH +CVDKWLKINASCPLCKSE+G+S
Sbjct: 354 GEDAVCCICLAKFANNDELRELPCSHFFHKECVDKWLKINASCPLCKSEVGES 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143048|ref|XP_002324833.1| predicted protein [Populus trichocarpa] gi|222866267|gb|EEF03398.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/414 (62%), Positives = 313/414 (75%), Gaps = 10/414 (2%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQH 60
           MDV S  L  + +TD +PLLME+       +HIIDI   ++ S S S++     + +  H
Sbjct: 1   MDVASTELHSENQTDTFPLLMERQENPNSSEHIIDIR--NEVSVSPSHNRISTGLEASLH 58

Query: 61  EDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQ 120
           ED P +    P+    +S SN  N+RSS ++R     RRRRSPLNSGLWISVEL++T+SQ
Sbjct: 59  EDRPLSGVRAPTSPPPTSLSNGTNSRSSSLIRRGEA-RRRRSPLNSGLWISVELVLTLSQ 117

Query: 121 IIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGS 180
           IIASIVVLS+SR E+P+APLFAWIVGYASGCVATLP+LYWR+ +R+Q ++ DS Q  QGS
Sbjct: 118 IIASIVVLSVSRKEHPRAPLFAWIVGYASGCVATLPLLYWRYSHRNQALEQDSAQNHQGS 177

Query: 181 S-LPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNA-LNFGGRLNGLVDHFKMALD 238
           + +  P  P S    +S ++ S+ E+ RS  T    GQNA LN    L  L+++FKMALD
Sbjct: 178 AHINVPAGPFS----LSVSRNSEGEDRRSATTSPRGGQNAVLNARYELKVLLEYFKMALD 233

Query: 239 CFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCII 298
           CFFAVWFVVGNVWIFG HSS  +AP LYRLCIVFLTFSCIGYAMPFILCATICCCLPCII
Sbjct: 234 CFFAVWFVVGNVWIFGSHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCII 293

Query: 299 SVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMI 358
           S+LG RED +QTRGAT E+I+ALPT+KFK  KN N  D  +SG  +GG++AAGTEKER+I
Sbjct: 294 SILGFREDLTQTRGATPESIDALPTHKFKLIKNRNGED-SSSGAADGGIVAAGTEKERVI 352

Query: 359 SGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412
           SGEDAVCCICLAKY ++DELREL CSH FH DCVDKWLKINASCPLCKSE+G+S
Sbjct: 353 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGES 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551132|ref|XP_002516614.1| ring finger protein, putative [Ricinus communis] gi|223544434|gb|EEF45955.1| ring finger protein, putative [Ricinus communis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/414 (63%), Positives = 317/414 (76%), Gaps = 7/414 (1%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQH 60
           MDV S     ++ TD  PLLMEQ +     +HIIDI  + D+S S+S+D     + +  +
Sbjct: 1   MDVSSTEQHSESLTDTCPLLMEQSNSINSSEHIIDIPRSSDSSPSTSHDRTTSGLEASSN 60

Query: 61  EDIPSTSTGVPSY-HSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVS 119
           ED P+TS   PS  H S+ +SN  N R+S ++R     RRRRSPLNSGLWISVEL++TVS
Sbjct: 61  EDRPTTSVRTPSISHLSTGTSNGSNTRNSSLIRRGEA-RRRRSPLNSGLWISVELVLTVS 119

Query: 120 QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQG 179
           QIIASIVVLSLSR+E+P+APLFAWIVGYASGCVATLP+LYWR+R+R+Q  + ++ Q RQ 
Sbjct: 120 QIIASIVVLSLSRHEHPRAPLFAWIVGYASGCVATLPLLYWRYRHRNQVTEQEAAQPRQS 179

Query: 180 SSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDC 239
           S    P +  S    IS  + S+  + RS+ T +  GQN+     RL  LV++FKMALDC
Sbjct: 180 SHFSVPGDSIS----ISITRNSEVVDRRSSSTSSRGGQNSGALNARLKTLVEYFKMALDC 235

Query: 240 FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 299
           FFAVWFVVGNVWIFGGHSS ++AP +YRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS
Sbjct: 236 FFAVWFVVGNVWIFGGHSSATEAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 295

Query: 300 VLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQD-NSGGTEGGVLAAGTEKERMI 358
           +LG RED  QTRGAT+E+I+ALPTYKFK  K+   +D+D NSG  +GGV+AAGTE ER I
Sbjct: 296 LLGFREDLGQTRGATSESIDALPTYKFKLNKHRTGDDRDSNSGAGDGGVVAAGTEHERFI 355

Query: 359 SGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412
           SGEDAVCCICLAKY ++DELREL CSH FH DCVDKWLKINASCPLCK+E+G+S
Sbjct: 356 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKTEVGES 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476391|ref|XP_002284536.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/417 (65%), Positives = 322/417 (77%), Gaps = 12/417 (2%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPH-RMASPQ 59
           M + SL L   +++D YPLLMEQ     D +HIIDIT + DASSS+S ++ P   +   Q
Sbjct: 1   MAIPSLELHSKSQSDIYPLLMEQPGNQIDTEHIIDITRSGDASSSNSSNDGPSTSLDQLQ 60

Query: 60  HEDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVS 119
           H+D P++S  VP    S SSSN  N+R+SF  R D    RRRSPLNSGLWIS+EL +TVS
Sbjct: 61  HDDRPASSARVPISQPSFSSSNVSNSRNSFRRRADAR--RRRSPLNSGLWISIELALTVS 118

Query: 120 QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQ- 178
           QIIAS+VVLSLSR+E+P APLF WIVGYASGCVATLPILYWRFR+R+QG + +S Q RQ 
Sbjct: 119 QIIASVVVLSLSRHEHPHAPLFTWIVGYASGCVATLPILYWRFRHRNQGHEQESAQSRQV 178

Query: 179 --GSSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMA 236
              S+LP  P       ++S    S+EE+ + +   T N Q+      RL  LV++FKMA
Sbjct: 179 SFHSNLPGGPT-----FSLSVTGTSEEEDRQPSVPATRNSQSVRRLSARLKVLVEYFKMA 233

Query: 237 LDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPC 296
           LDCFFAVWFVVGNVWIFGGHSS S+AP LYRLCIVFLTFSCIGYAMPFILCATICCCLPC
Sbjct: 234 LDCFFAVWFVVGNVWIFGGHSSSSEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPC 293

Query: 297 IISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQD-NSGGTEGGVLAAGTEKE 355
           IIS+LG RED +QTRGAT+E+INALPTYKFK KKN N +D++ NSG  EGGV+AAGTE+E
Sbjct: 294 IISILGFREDLTQTRGATSESINALPTYKFKLKKNRNGDDREGNSGAGEGGVVAAGTERE 353

Query: 356 RMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412
           R+ISGEDAVCCICLAKY ++DELREL CSH FH +CVDKWLKINA CPLCK E+G+S
Sbjct: 354 RVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKREVGES 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220126|ref|NP_178156.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|12324974|gb|AAG52430.1|AC018848_1 putative RING zinc finger protein; 53384-54880 [Arabidopsis thaliana] gi|17065538|gb|AAL32923.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|23197724|gb|AAN15389.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|222423453|dbj|BAH19697.1| AT1G80400 [Arabidopsis thaliana] gi|332198277|gb|AEE36398.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/422 (59%), Positives = 309/422 (73%), Gaps = 26/422 (6%)

Query: 1   MDVRSLGLIRDTE-TDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQ---PHRMA 56
           MDV S+  +R+T  TDQ PLLM+    H +R+HI+DIT+ D+  SSS        P   +
Sbjct: 1   MDVSSI--VRNTTLTDQDPLLMD----HGNREHIVDITSNDEEDSSSRSSLDELTPQGNS 54

Query: 57  SPQHEDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGD-GYGRRRRSPLNSGLWISVELI 115
               E + S+S     + +  S   +   R +   RGD G GRR RSPLNSGLWISVEL+
Sbjct: 55  HQGEETVLSSSNATQQHPTHPSPPQQ---RPTSSRRGDNGNGRRTRSPLNSGLWISVELV 111

Query: 116 VTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQ 175
           VTV+QI+A+IVV+ L+++E+P+APLF W++GY  GC+ATLPILYWRFR  ++    DS+Q
Sbjct: 112 VTVAQIVAAIVVMVLAKDEHPEAPLFTWVIGYTCGCLATLPILYWRFRTYNRATGQDSSQ 171

Query: 176 L---RQGSSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDH 232
                QG+S  TP      YTA+S  QA+DEEN+        N Q   +   RLNGLVDH
Sbjct: 172 RATSSQGNSESTP------YTAVSVAQAADEENSTGVSAAPRNNQVGESLRTRLNGLVDH 225

Query: 233 FKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICC 292
           FKMA+DCFFAVWFVVGNVWIFGGHSSPSD+PKLYRLCI FLTFSCIGYAMPFILCATICC
Sbjct: 226 FKMAIDCFFAVWFVVGNVWIFGGHSSPSDSPKLYRLCIAFLTFSCIGYAMPFILCATICC 285

Query: 293 CLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGT 352
           CLPC+ISVLG RE++SQTRGATAE INALP Y+FKSK     ND + S   EGG L  G+
Sbjct: 286 CLPCLISVLGFRENFSQTRGATAEAINALPVYRFKSKSR---NDLEFSEEGEGGFLLLGS 342

Query: 353 EKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412
           +K+R+ISGEDA CCICL +Y DD+++REL CSHVFHVDCVDKWLKINA+CPLCK+E+G+S
Sbjct: 343 QKKRLISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCKNEVGES 402

Query: 413 SS 414
           SS
Sbjct: 403 SS 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842825|ref|XP_002889294.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297335135|gb|EFH65553.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/414 (59%), Positives = 299/414 (72%), Gaps = 18/414 (4%)

Query: 1   MDVRSLGLIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDASSSSSYDEQPHRMASPQH 60
           MDV S+   R + TDQ+PLLM+  H H +RDHI+DIT ++    SSS DE        + 
Sbjct: 1   MDVSSIA--RTSLTDQHPLLMDH-HTHNNRDHIVDITMSN-GQDSSSIDELTPPHQGEEE 56

Query: 61  EDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSPLNSGLWISVELIVTVSQ 120
               ST T  P+      +S+R   R++            RSPLNSGLWISVEL+VTV+Q
Sbjct: 57  TVSSSTLTAHPAPPQQRPTSSRNARRTT----------STRSPLNSGLWISVELVVTVAQ 106

Query: 121 IIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGS 180
           I+A+IVV+ L+++E+P+APLF W++GY SGC+ATLPILYWRFR   +G   DS+Q    S
Sbjct: 107 IVAAIVVMVLAKDEHPEAPLFTWVIGYTSGCIATLPILYWRFRTYSRGTGQDSSQRLSSS 166

Query: 181 SLPTP-PEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDC 239
           S     P  ++ YTA+S  QA+DEEN+        N Q       RLNGLVDHFKMA+DC
Sbjct: 167 SQANNNPSESTPYTAVSVAQAADEENSTDMSAAPRNNQVGETLRTRLNGLVDHFKMAIDC 226

Query: 240 FFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIS 299
           FFAVWFVVGNVWIFGGHSSPSD+PKLYRLCI FLTFSCIGYAMPFILCATICCCLPC+IS
Sbjct: 227 FFAVWFVVGNVWIFGGHSSPSDSPKLYRLCIAFLTFSCIGYAMPFILCATICCCLPCLIS 286

Query: 300 VLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMIS 359
           VLG RE++SQTRGAT E INALP Y+FKSK     ND + S   EGG L  G++K+R+IS
Sbjct: 287 VLGFRENFSQTRGATTEAINALPVYRFKSKSR---NDLEFSEEGEGGFLLLGSQKKRLIS 343

Query: 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
           GEDA CCICL +Y DD ++REL CSHVFHVDCVDKWLKINA+CPLCK+E+G+SS
Sbjct: 344 GEDASCCICLTRYGDDVQVRELPCSHVFHVDCVDKWLKINATCPLCKNEVGESS 397

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.725	0.754	0.664	5.9e-118
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.728	0.679	0.649	4.8e-110
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.399	0.492	0.401	1.2e-45
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.418	0.453	0.415	5.2e-43
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.678	0.753	0.339	1.1e-41
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.687	0.713	0.322	4.6e-41
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.508	0.567	0.373	1.2e-39
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.380	0.469	0.405	1.9e-35
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.380	0.448	0.371	1.3e-32
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.314	0.397	0.348	9e-26

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1134 (404.2 bits), Expect = 5.9e-118, Sum P(2) = 5.9e-118
 Identities = 208/313 (66%), Positives = 247/313 (78%)

Query:   102 SPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWR 161
             SPLNSGLWISVEL+VTV+QI+A+IVV+ L+++E+P+APLF W++GY  GC+ATLPILYWR
Sbjct:    98 SPLNSGLWISVELVVTVAQIVAAIVVMVLAKDEHPEAPLFTWVIGYTCGCLATLPILYWR 157

Query:   162 FRNRHQGIDSDSTQLRQGXXXXXXXXXXXXXXAISANQASDEENNRSTETETGNGQNALN 221
             FR  ++    DS+Q                  A+S  QA+DEEN+        N Q   +
Sbjct:   158 FRTYNRATGQDSSQR---ATSSQGNSESTPYTAVSVAQAADEENSTGVSAAPRNNQVGES 214

Query:   222 FGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYA 281
                RLNGLVDHFKMA+DCFFAVWFVVGNVWIFGGHSSPSD+PKLYRLCI FLTFSCIGYA
Sbjct:   215 LRTRLNGLVDHFKMAIDCFFAVWFVVGNVWIFGGHSSPSDSPKLYRLCIAFLTFSCIGYA 274

Query:   282 MPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSG 341
             MPFILCATICCCLPC+ISVLG RE++SQTRGATAE INALP Y+FKSK     ND + S 
Sbjct:   275 MPFILCATICCCLPCLISVLGFRENFSQTRGATAEAINALPVYRFKSKSR---NDLEFSE 331

Query:   342 GTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINAS 401
               EGG L  G++K+R+ISGEDA CCICL +Y DD+++REL CSHVFHVDCVDKWLKINA+
Sbjct:   332 EGEGGFLLLGSQKKRLISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINAT 391

Query:   402 CPLCKSEIGDSSS 414
             CPLCK+E+G+SSS
Sbjct:   392 CPLCKNEVGESSS 404

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 206/317 (64%), Positives = 245/317 (77%)

Query:   102 SPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWR 161
             SPLNSGLWIS+EL +TV QIIA+IVVLSLS++E+P+APLF WIVGYA GCVATLP+LYWR
Sbjct:   105 SPLNSGLWISIELFLTVGQIIAAIVVLSLSKHEHPRAPLFTWIVGYACGCVATLPLLYWR 164

Query:   162 FRNRHQGIDSDSTQLRQGXXXXXXXXXXXXXXAISANQASDEENNRSTETETGNGQNALN 221
             + + +Q  + DS Q R                A S ++ S E + R T T +  G     
Sbjct:   165 YYHSNQASEQDSGQHRPNLNVAAGPF------AFSISRTS-EADGRQTNTTSSRGSRYPG 217

Query:   222 F--GGRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIG 279
             F    RL  +V++FKMALDCFFAVWFVVGNVWIFGGHSS ++AP LYRLC+VFLTFSCIG
Sbjct:   218 FISAARLKVIVEYFKMALDCFFAVWFVVGNVWIFGGHSSAAEAPNLYRLCLVFLTFSCIG 277

Query:   280 YAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDN 339
             YAMPFILC TICCCLPCIIS+LG RED +Q RGAT E+INALPT+KFK KK+ +  D + 
Sbjct:   278 YAMPFILCTTICCCLPCIISILGYREDLTQPRGATPESINALPTHKFKLKKSRSNGDDNG 337

Query:   340 SGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN 399
             S  +EGGV+AAGT+ ER ISGEDAVCCICLAKY +++ELREL CSH FH +CVDKWLKIN
Sbjct:   338 SSTSEGGVVAAGTDNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKIN 397

Query:   400 ASCPLCKSEIGDSSSPL 416
             ASCPLCKSE+G+ +S L
Sbjct:   398 ASCPLCKSEVGEKNSDL 414

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 75/187 (40%), Positives = 116/187 (62%)

Query:   225 RLNGLVDHFKMALDCFFAVWFVVGNVWIFGGH-SSPSDAPKLYRLCIVFLTFSCIGYAMP 283
             R + L++  + +L+ FFA+WFV+GNVW+F     S   APKL+ LC+  L ++ I Y+ P
Sbjct:   171 RSSHLMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHHAPKLHVLCVSLLAWNAICYSFP 230

Query:   284 FILCATICCCLPCIISVLGIREDY-SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGG 342
             F+L   +CC +P I S+LG   +  S  R A+ + I++LP++KFK + + + +D D+   
Sbjct:   231 FLLFLFLCCLVPLISSLLGYNMNMGSSDRAASDDQISSLPSWKFK-RIDDSASDSDSDSA 289

Query:   343 TEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASC 402
             T              ++ +D  CCICLAKY D +E+R+L CSH FH  CVD+WL+I + C
Sbjct:   290 T--------------VT-DDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCC 334

Query:   403 PLCKSEI 409
             PLCK ++
Sbjct:   335 PLCKQDL 341

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 81/195 (41%), Positives = 112/195 (57%)

Query:   224 GRLNGLVDHFKMALDCFFAVWFVVGNVWIF-GGHSSPSDAPKLYRLCIVFLTFS------ 276
             G  +    H + A   F  +W+++G  W+  GG +  SD+P+LY LCI+FL F       
Sbjct:   197 GETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVF 256

Query:   277 CIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLND 336
             C+  A+  ++   +CCCLPCII++L    D     GA+   I+ +P  KF+  K GN+  
Sbjct:   257 CV--ALACVIGLAVCCCLPCIIAILYAVADQE---GASKNDIDQMP--KFRFTKTGNV-- 307

Query:   337 QDNSGGTEGGVLAAGTEK--ERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDK 394
             +  SG   G +   GT+   ER +S EDA CCICL +Y D  ELREL C+H FH  C+DK
Sbjct:   308 EKLSGKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDK 367

Query:   395 WLKINASCPLCKSEI 409
             WL IN+ CPLCK  I
Sbjct:   368 WLHINSRCPLCKFNI 382

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 108/318 (33%), Positives = 158/318 (49%)

Query:   110 ISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGI 169
             + ++ +  ++ ++ +  VL LS +ENP  PL  WI+GY   C+  +  +   +R R+   
Sbjct:    75 VVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRR 134

Query:   170 DSDSTQLRQGXXXXXXXXXXXXXXAISANQASDEENNRSTETETGNGQNALNFGGRLNGL 229
               D +  R                 +  ++ SDE        E G  +N  N     N  
Sbjct:   135 RRDLSP-RSSSSSSSSSSSMDEEEGLGLSRNSDERY-----LELGQLENE-N-----NSF 182

Query:   230 VDHFKMALDCFFAVWFVVGNVWIF-GGHSSPSDAPKLYRLCIVFLTFS------CIGYAM 282
               H + A      +W+V+G  W+  GG      +P+LY LCIVFL F       C+  A+
Sbjct:   183 AKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCV--AL 240

Query:   283 PFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLN---DQDN 339
               ++   +CCCLPCII+VL      ++  GA+ E I+ L  +KF+ K    +    D++ 
Sbjct:   241 ACVIGIAVCCCLPCIIAVLYA---VAEQEGASKEDIDQLTKFKFR-KVGDTMKHTVDEEQ 296

Query:   340 SGGTEGGVLA-AGTEK--ERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL 396
               G  GGV+   GT+   E  +  EDA CCICL+ Y D+ ELREL C H FH  CVDKWL
Sbjct:   297 GQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWL 356

Query:   397 KINASCPLCKSEIGDSSS 414
              INA+CPLCK  I  SS+
Sbjct:   357 YINATCPLCKYNILKSSN 374

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 102/316 (32%), Positives = 161/316 (50%)

Query:   110 ISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGI 169
             + ++++  ++ +  +  +L +SR E+P  PL  W++GYA  CV  +  +   +R R++  
Sbjct:   101 VVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNR-- 158

Query:   170 DSDSTQLRQGXXXXXXXXXXXXXXAISANQASDEENNRSTETETGNGQNAL-NFGGRLNG 228
                    R+               + S++ +S EE    +   +G    +L +     + 
Sbjct:   159 -------RRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSS 211

Query:   229 LVDHFKMALDCFFAVWFVVGNVWIF-GGHSSPSDAPKLYRLCIVFLTFS------CIGYA 281
             +  H + A   F  +W+++G  W+  GG     ++P++Y L IVFL F       C+  A
Sbjct:   212 VAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCV--A 269

Query:   282 MPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSG 341
             +  ++   +CCCLPCII+VL    D     GA+ E I  L  +KF+   + N +  D + 
Sbjct:   270 LACVIGIAVCCCLPCIIAVLYAVADQE---GASKEDIEQLTKFKFRKLGDANKHTNDEAQ 326

Query:   342 GTEGGVLA-AGTEK--ERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI 398
             GT  G++   GT+   E  +  EDA CCICL+ Y D  ELREL C H FH  CVDKWL I
Sbjct:   327 GTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYI 386

Query:   399 NASCPLCKSEIGDSSS 414
             NA+CPLCK  I  SS+
Sbjct:   387 NATCPLCKYNILKSSN 402

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 86/230 (37%), Positives = 118/230 (51%)

Query:   196 SANQASDEENNRSTETET-GNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWIFG 254
             S   +S+ E+   +E E+ G   N  +          H + A   F  VW+++G  W+  
Sbjct:   149 SGEDSSNHESLSGSEDESDGYSINNTDDDDHGTSFTKHLESANTMFSFVWWIIGFYWVTA 208

Query:   255 GHSS-PSDAPKLYRLCIVFLTFSC----IGYAMPFILCATICCCLPCIISVLGIREDYSQ 309
                +    +P+LY LC+ FL F      I  A+  ++   +CCCLPCII++L    D   
Sbjct:   209 DTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVASLIGIAVCCCLPCIIAILYALADQE- 267

Query:   310 TRGATAETINALPTYKFKSKKNGN-LNDQDNSGGTEGGVLAA-GTEK--ERMISGEDAVC 365
               GA  E I  L  +KF + KN   +N +     T+GG++    TE   ERM+  EDA C
Sbjct:   268 --GAPDEEIERLLKFKFLTVKNSEKVNGEIRE--TQGGIMTGLDTESQTERMLLSEDAEC 323

Query:   366 CICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSP 415
              ICL  Y D  ELREL C H FH  CVDKWL+INA+CPLCK  I  +  P
Sbjct:   324 SICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLCKFNILKNGEP 373

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 71/175 (40%), Positives = 97/175 (55%)

Query:   243 VWFVVGNVWIF-GGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCA-----TICCCLPC 296
             VW++VG  W+  GG     +A  LY L  VFL F  + +A+  ++ A      +CCCLPC
Sbjct:   168 VWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFD-VFFAIFCVVLACLIGIALCCCLPC 226

Query:   297 IISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTE--K 354
             II++L      +   GA+   ++ LP Y+F +  N     Q + GG    V AA      
Sbjct:   227 IIALLYA---VAGQEGASEADLSILPKYRFHTMNNDE--KQSDGGGKMIPVDAASENLGN 281

Query:   355 ERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
             ER++  EDA CCICL+ Y D  EL  L C+H FH  C+ KWLK+NA+CPLCK  I
Sbjct:   282 ERVLLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNI 336

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 65/175 (37%), Positives = 96/175 (54%)

Query:   243 VWFVVGNVWIF-GGHSSPSDAPKLYRLCIVFLT----FSCIGYAMPFILCATICCCLPCI 297
             +W+++G  W+  GG     +AP LY L ++FL     F+     +  ++   +CCCLPCI
Sbjct:   183 IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCI 242

Query:   298 ISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSG-GTEGGVLAAGT--EK 354
             I++L      + T G +   +  LP YKFK+  +   N+++ +G G    +   G     
Sbjct:   243 IALLYA---VAGTEGVSEAELGVLPLYKFKAFHS---NEKNITGPGKMVPIPINGLCLAT 296

Query:   355 ERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
             ER +  EDA CCICL+ Y D  EL  L C+H FH  C+ KWLK+ A+CPLCK  I
Sbjct:   297 ERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
 Identities = 47/135 (34%), Positives = 78/135 (57%)

Query:   225 RLNGLVDHFKMALDCFFAVWFVVGNVWIFGGH-SSPSDAPKLYRLCIVFLTFSCIGYAMP 283
             R + L++  + +L+ FFA+WFV+GNVW+F     S   AP L+ LCI  L ++ + Y+ P
Sbjct:   168 RCSHLMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHYAPILHVLCISLLAWNALCYSFP 227

Query:   284 FILCATICCCLPCIISVLGIREDY-SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGG 342
             F+L   +CC +P + S LG   +  S  +GA+ + I++LP++K+K     + + Q N+  
Sbjct:   228 FLLFLLLCCVVPLVSSFLGYNMNVGSSEKGASDDQISSLPSWKYKLIDETSDSSQANNDP 287

Query:   343 TEGGVLAAGTEKERM 357
                  LA   EKE +
Sbjct:   288 ECCICLAKYKEKEEV 302

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-15
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	5e-10
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-09
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-07
smart00184	40	smart00184, RING, Ring finger	3e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	6e-06
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	3e-05
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	1e-04
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	2e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	0.002
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSE 408
            C ICL ++   +E+  L C HVFH +C+DKWL+ + +CPLC++ 
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLCKSEI 409
           C ICL ++   + +  L C HVF   C+DKWLK    +CPLC++ I
Sbjct: 2   CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 361 EDAVCCICL---------AKYVDDD-ELRELICSHVFHVDCVDKWLKINASCPLCK 406
           ED VC IC           K   DD  +    C H FH+ C+ +WLK   +CPLC+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWL-KINASCPLCKSEI 409
           C IC++ ++ +D LR L C H FHV CVDKWL   +  CP+C++ I
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKS 407
           E+  C ICL    D   +    C HVF  +C+ ++LK  + CP+C++
Sbjct: 1   EELECPICLDLLRD--PVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLC 405
           C ICL +Y+ D     L C H F   C+ KWL+  N +CP+C
Sbjct: 1   CPICLEEYLKD--PVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 352 TEKERMISGEDAVCCICLAKYVD----------DDELRELICSHVFHVDCVDKWLKINAS 401
           T  E  ++  D  C IC+ +             D   + L C H+ H+ C+  WL+   +
Sbjct: 277 TATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT 336

Query: 402 CPLCKSE-IGDSSSPLVQ 418
           CP+C+   I D SSP   
Sbjct: 337 CPICRRPVIFDQSSPTPA 354

Length = 491

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 7/54 (12%)

Query: 361 EDAVCCICLAKYVDDDELRELI------CSHVFHVDCVDKWLKINASCPLCKSE 408
           +D  C IC+ K V D E++ +       C+HVF ++C+D W K   +CP+C++ 
Sbjct: 173 KDKECAICMEK-VYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA-SCPLC 405
           C ICL +  D   +  L C H+F   C+  WL+    +CPLC
Sbjct: 1   CPICLEEPKD--PVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 365 CCI-CLAKYVDDDELRELI--CSHVFHVDCVDKWLKINASCPLCKSE 408
            C  C       DE   +   C+H FH  C+ +WL     CPL +  
Sbjct: 33  TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 13/61 (21%)

Query: 361 EDAVCCICLAKYV----------DDDELRELICSHVFHVDCVDKWLKINAS---CPLCKS 407
            D VC IC   +           DD  L    C H FH+ C+ KWL    S   CP+C+ 
Sbjct: 20  SDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCRQ 79

Query: 408 E 408
            
Sbjct: 80  T 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 383  CSHVFHVDCVDKWLKINAS--CPLCKSEI 409
            C + FH  C+ KW   +A   CPLC+SEI
Sbjct: 1494 CKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.8
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.54
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.43
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.33
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.29
PHA02929	238	N1R/p28-like protein; Provisional	99.25
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.96
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.95
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.91
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.9
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.89
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.82
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.8
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.78
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.67
PF14634	44	zf-RING_5: zinc-RING finger domain	98.64
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.62
PHA02926	242	zinc finger-like protein; Provisional	98.58
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.57
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.49
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.45
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.44
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.42
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.42
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.41
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.38
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.35
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.22
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.16
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.16
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.06
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.06
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.94
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.86
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.82
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.78
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.77
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.74
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.74
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.71
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.63
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.53
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.36
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.35
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.29
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.1
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	97.01
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.97
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.85
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.79
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.79
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.73
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.68
PHA02862	156	5L protein; Provisional	96.39
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.37
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.07
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.06
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.03
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.01
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.78
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.71
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.42
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.0
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.87
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.84
KOG2660	331	consensus Locus-specific chromosome binding protei	94.73
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.72
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.59
COG5152	259	Uncharacterized conserved protein, contains RING a	94.06
KOG1002	791	consensus Nucleotide excision repair protein RAD16	93.91
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.85
PHA03096	284	p28-like protein; Provisional	93.83
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.58
KOG4739	233	consensus Uncharacterized protein involved in syna	93.26
KOG1609	323	consensus Protein involved in mRNA turnover and st	92.57
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	92.35
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	92.09
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	92.01
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	91.78
COG5222	427	Uncharacterized conserved protein, contains RING Z	91.22
KOG1940	276	consensus Zn-finger protein [General function pred	91.2
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	90.82
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.17
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	89.87
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	89.35
PF04641	260	Rtf2: Rtf2 RING-finger	89.13
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	89.07
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	89.02
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	87.18
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	87.08
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	86.88
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.66
KOG1001	674	consensus Helicase-like transcription factor HLTF/	86.21
KOG3053	293	consensus Uncharacterized conserved protein [Funct	85.67
COG5236	493	Uncharacterized conserved protein, contains RING Z	85.64
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	85.57
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	85.31
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	83.14
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	83.06
KOG0298	1394	consensus DEAD box-containing helicase-like transc	80.7
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	80.56

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.9e-20  Score=183.54  Aligned_cols=82  Identities=34%  Similarity=0.750  Sum_probs=68.7

Q ss_pred             cccccccHHHhhcCCcEEecccCCCCCCCCCCCCCCCCCccccCcchhhhcCCCCceeeecccccccCCceEEeccCccc
Q 037568          308 SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVF  387 (423)
Q Consensus       308 ~~~rgas~~~I~~LP~~ky~~~~~~~~~~~~~~~~~~gg~~~~~t~~er~ls~ed~eC~ICL~~y~dge~lr~LPC~H~F  387 (423)
                      .+.+++.++.++++|.++|+....++..                           ..|+|||++|++||++|.|||+|.|
T Consensus       202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~---------------------------~~CaIClEdY~~GdklRiLPC~H~F  254 (348)
T KOG4628|consen  202 LRRNRLIKRLLKKLPVRTFTKGDDEDAT---------------------------DTCAICLEDYEKGDKLRILPCSHKF  254 (348)
T ss_pred             hhhhhhHHHHHhhCCcEEeccccccCCC---------------------------ceEEEeecccccCCeeeEecCCCch
Confidence            3557889999999999999874322110                           3599999999999999999999999


Q ss_pred             cHHHHHHHHhcCCC-CcccccccCCCCCCC
Q 037568          388 HVDCVDKWLKINAS-CPLCKSEIGDSSSPL  416 (423)
Q Consensus       388 H~~CId~WL~~~~t-CPlCR~~I~~~~~~~  416 (423)
                      |..|||+||..+.+ ||+||+++.++....
T Consensus       255 H~~CIDpWL~~~r~~CPvCK~di~~~~~~~  284 (348)
T KOG4628|consen  255 HVNCIDPWLTQTRTFCPVCKRDIRTDSGSE  284 (348)
T ss_pred             hhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence            99999999987754 999999998876554

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.54  E-value=2.6e-15  Score=107.72  Aligned_cols=43  Identities=47%  Similarity=1.164  Sum_probs=40.7

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccc
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCK  406 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR  406 (423)
                      +|+||+++|.+++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999999999999999999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.1e-13  Score=134.55  Aligned_cols=52  Identities=42%  Similarity=1.061  Sum_probs=48.0

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHh-cCCCCcccccccCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLCKSEIGD  411 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~  411 (423)
                      ....+|+|||++|-.+|+++.|||+|.||..||++|+. .+..||+||.+|++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            34478999999999999999999999999999999997 78899999999976

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2e-12  Score=128.65  Aligned_cols=57  Identities=26%  Similarity=0.836  Sum_probs=47.2

Q ss_pred             hhcCCCCceeeecccc-cccCC---------ceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          356 RMISGEDAVCCICLAK-YVDDD---------ELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       356 r~ls~ed~eC~ICL~~-y~dge---------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      +.+..+|..|.||+++ |+.+.         +-+.|||+|+||.+|++.|++++.+||+||.++.-+
T Consensus       281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd  347 (491)
T COG5243         281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD  347 (491)
T ss_pred             hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccc
Confidence            3455668889999999 55442         347999999999999999999999999999995443

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.29  E-value=2.4e-12  Score=102.53  Aligned_cols=45  Identities=40%  Similarity=0.970  Sum_probs=36.4

Q ss_pred             Cceeeeccccccc----------CCceEEeccCccccHHHHHHHHhcCCCCcccc
Q 037568          362 DAVCCICLAKYVD----------DDELRELICSHVFHVDCVDKWLKINASCPLCK  406 (423)
Q Consensus       362 d~eC~ICL~~y~d----------ge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR  406 (423)
                      +..|+||++.|.+          +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3459999999943          23456668999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.25  E-value=2.4e-12  Score=123.86  Aligned_cols=76  Identities=26%  Similarity=0.597  Sum_probs=55.5

Q ss_pred             cccccHHHhhcCCcEEecccCCCCCCCCCCCCCCCCCccccCcchhhhcCCCCceeeecccccccCCc----eEEe-ccC
Q 037568          310 TRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDE----LREL-ICS  384 (423)
Q Consensus       310 ~rgas~~~I~~LP~~ky~~~~~~~~~~~~~~~~~~gg~~~~~t~~er~ls~ed~eC~ICL~~y~dge~----lr~L-PC~  384 (423)
                      .++.++..++.||.+...-....                         ....+.+|+||++.+.+++.    +..+ +|+
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~-------------------------~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~  201 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLY-------------------------NRSKDKECAICMEKVYDKEIKNMYFGILSNCN  201 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhh-------------------------cCCCCCCCccCCcccccCccccccceecCCCC
Confidence            45667888888888754321110                         01124679999999876541    2344 699


Q ss_pred             ccccHHHHHHHHhcCCCCcccccccC
Q 037568          385 HVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       385 H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      |.||.+||.+|++.+.+||+||..+.
T Consensus       202 H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        202 HVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CcccHHHHHHHHhcCCCCCCCCCEee
Confidence            99999999999999999999999875

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.96  E-value=4.1e-10  Score=78.99  Aligned_cols=44  Identities=45%  Similarity=1.093  Sum_probs=37.3

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCccccccc
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEI  409 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I  409 (423)
                      +|+||++.+  .+.+..++|+|.||..|+++|++. +..||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  344556669999999999999987 78899999864

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.7e-10  Score=109.79  Aligned_cols=57  Identities=26%  Similarity=0.652  Sum_probs=49.7

Q ss_pred             hhhcCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          355 ERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       355 er~ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      +..+.+.+..|.|||+.-++.   ..+||||+|++.||-.|+..++.||+||....++.-
T Consensus       232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            344666778899999998777   689999999999999999999999999999877653

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.91  E-value=7e-10  Score=81.64  Aligned_cols=46  Identities=35%  Similarity=0.828  Sum_probs=39.6

Q ss_pred             CceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      +.+|.||++...+   +..+||+|. |+..|+.+|++.+..||+||++|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4579999998654   588899999 999999999999999999999885

...

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=7.5e-10  Score=118.93  Aligned_cols=61  Identities=30%  Similarity=0.750  Sum_probs=52.4

Q ss_pred             hhhhcCCCCceeeecccccccCCc--eEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          354 KERMISGEDAVCCICLAKYVDDDE--LRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       354 ~er~ls~ed~eC~ICL~~y~dge~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      .++.+...+..|.||++++..++.  .+.|||+|.||..|+.+||++..+||.||..+.....
T Consensus       283 ~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~  345 (543)
T KOG0802|consen  283 EERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL  345 (543)
T ss_pred             HHhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence            444566678899999999999876  7899999999999999999999999999996655543

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.89  E-value=9.9e-10  Score=102.19  Aligned_cols=50  Identities=36%  Similarity=0.878  Sum_probs=42.0

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc----------------CCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI----------------NASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~  412 (423)
                      +++.+|.||++.+++.   ..++|+|.||..||.+|+..                ..+||+||.+|...
T Consensus        16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            3567899999998776   66899999999999999852                35799999999654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.82  E-value=2.4e-09  Score=74.80  Aligned_cols=39  Identities=38%  Similarity=0.964  Sum_probs=33.9

Q ss_pred             eeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccc
Q 037568          365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLC  405 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlC  405 (423)
                      |.||++.+.+  .+..++|+|.|+.+||.+|++.+.+||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8899999887  45788999999999999999999999998

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=5.3e-09  Score=99.15  Aligned_cols=50  Identities=34%  Similarity=0.767  Sum_probs=41.8

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc---CCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI---NASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~  412 (423)
                      ...-+|.|||+.-+|.   .+..|+|+|++.||.+||..   +..||+||..|..+
T Consensus        45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            3456799999997776   67779999999999999975   35689999998664

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.78  E-value=5e-09  Score=85.22  Aligned_cols=49  Identities=39%  Similarity=0.870  Sum_probs=38.3

Q ss_pred             Cceeeecccccc--------cCCc--eEEeccCccccHHHHHHHHhc---CCCCcccccccC
Q 037568          362 DAVCCICLAKYV--------DDDE--LRELICSHVFHVDCVDKWLKI---NASCPLCKSEIG  410 (423)
Q Consensus       362 d~eC~ICL~~y~--------dge~--lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~  410 (423)
                      |..|.||...|+        .|+.  +..-.|+|.||..||.+||..   +.+||+||++..
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            567999999997        2333  333359999999999999974   578999998753

>smart00184 RING Ring finger

Probab=98.67  E-value=1.6e-08  Score=68.37  Aligned_cols=38  Identities=45%  Similarity=1.038  Sum_probs=33.4

Q ss_pred             eeecccccccCCceEEeccCccccHHHHHHHHh-cCCCCccc
Q 037568          365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLC  405 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-~~~tCPlC  405 (423)
                      |.||++.   ......+||+|.||..|+++|++ .+..||+|
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899988   44568899999999999999998 67789998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.64  E-value=1.8e-08  Score=72.33  Aligned_cols=44  Identities=32%  Similarity=0.839  Sum_probs=39.7

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccc
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKS  407 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  407 (423)
                      +|.||+++|.+....+.|+|+|.|+..|+.++......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            39999999977778899999999999999999977889999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.62  E-value=1.8e-08  Score=70.78  Aligned_cols=39  Identities=46%  Similarity=1.024  Sum_probs=34.7

Q ss_pred             eeecccccccCCceEEeccCccccHHHHHHHHh--cCCCCccc
Q 037568          365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLK--INASCPLC  405 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~--~~~tCPlC  405 (423)
                      |.||++.+.+..  +.++|+|.|+..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988874  6889999999999999998  56679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PHA02926 zinc finger-like protein; Provisional

Probab=98.58  E-value=2.4e-08  Score=94.21  Aligned_cols=50  Identities=26%  Similarity=0.829  Sum_probs=37.6

Q ss_pred             CCceeeecccccccC----C-ceEEe-ccCccccHHHHHHHHhcC------CCCcccccccC
Q 037568          361 EDAVCCICLAKYVDD----D-ELREL-ICSHVFHVDCVDKWLKIN------ASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dg----e-~lr~L-PC~H~FH~~CId~WL~~~------~tCPlCR~~I~  410 (423)
                      ++.+|+|||+..-+.    + .-..| +|+|.||..||++|-+.+      .+||+||....
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            457899999986432    1 12345 599999999999999753      45999998754

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.3e-08  Score=98.09  Aligned_cols=52  Identities=31%  Similarity=0.724  Sum_probs=44.5

Q ss_pred             CCceeeecccccccCC-------ceEEeccCccccHHHHHHHH--hcCCCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDD-------ELRELICSHVFHVDCVDKWL--KINASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge-------~lr~LPC~H~FH~~CId~WL--~~~~tCPlCR~~I~~~  412 (423)
                      +|..|+||-..+.+.+       +..+|.|+|.||..||..|.  ..+.+||.||..|.-.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            4677999999887665       67899999999999999997  5678999999988654

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=5.6e-08  Score=88.77  Aligned_cols=50  Identities=30%  Similarity=0.644  Sum_probs=42.6

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ...|.|||+.|+.... ....|||+|+++||+.-|+....||+|++.|.+.
T Consensus       131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            3679999999987644 3467999999999999999999999999977653

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.45  E-value=1.2e-07  Score=69.80  Aligned_cols=41  Identities=29%  Similarity=0.821  Sum_probs=33.3

Q ss_pred             eeecccccccCCceEEeccC-----ccccHHHHHHHHhc--CCCCcccc
Q 037568          365 CCICLAKYVDDDELRELICS-----HVFHVDCVDKWLKI--NASCPLCK  406 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR  406 (423)
                      |-||++ +.+++....+||.     |++|..|+++|+..  +.+||+|+
T Consensus         2 CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        2 CRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             ccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            899999 4445555688985     99999999999954  45899996

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>smart00504 Ubox Modified RING finger domain

Probab=98.44  E-value=1.5e-07  Score=71.79  Aligned_cols=46  Identities=20%  Similarity=0.392  Sum_probs=41.2

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .|+||++-+++.   ..+||+|.|...||.+|++.+.+||+|+..+...
T Consensus         3 ~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~   48 (63)
T smart00504        3 LCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHE   48 (63)
T ss_pred             CCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence            599999999986   5679999999999999999899999999988543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.42  E-value=1.4e-07  Score=67.25  Aligned_cols=38  Identities=39%  Similarity=0.861  Sum_probs=30.3

Q ss_pred             eeecccccccCCceEEeccCccccHHHHHHHHhcC----CCCccc
Q 037568          365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN----ASCPLC  405 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~----~tCPlC  405 (423)
                      |+||++-|.+.   ..|+|+|.|...||.+|.+..    ..||+|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999998   789999999999999999653    469998

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.42  E-value=1.7e-07  Score=74.72  Aligned_cols=46  Identities=35%  Similarity=0.876  Sum_probs=36.1

Q ss_pred             eeeecccccc-----------cCCceEEe--ccCccccHHHHHHHHhcCCCCccccccc
Q 037568          364 VCCICLAKYV-----------DDDELREL--ICSHVFHVDCVDKWLKINASCPLCKSEI  409 (423)
Q Consensus       364 eC~ICL~~y~-----------dge~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~I  409 (423)
                      .|+||..-|.           .+++....  -|+|.||..||.+||+.+..||+||+..
T Consensus        22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w   80 (88)
T COG5194          22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW   80 (88)
T ss_pred             hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence            3666665553           46665444  4999999999999999999999999864

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.2e-07  Score=97.72  Aligned_cols=49  Identities=24%  Similarity=0.727  Sum_probs=39.0

Q ss_pred             ceeeeccccccc---CCc-----------eEEeccCccccHHHHHHHHh-cCCCCcccccccCC
Q 037568          363 AVCCICLAKYVD---DDE-----------LRELICSHVFHVDCVDKWLK-INASCPLCKSEIGD  411 (423)
Q Consensus       363 ~eC~ICL~~y~d---ge~-----------lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~  411 (423)
                      ..|+||+.+..-   +..           ....||+|+||..|+..|+. .+-.||+||.++.+
T Consensus       572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            459999998752   111           23459999999999999998 67799999998864

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=9.7e-08  Score=75.53  Aligned_cols=47  Identities=32%  Similarity=0.880  Sum_probs=36.4

Q ss_pred             ceeeeccccccc--------CCceEEe--ccCccccHHHHHHHHhc---CCCCccccccc
Q 037568          363 AVCCICLAKYVD--------DDELREL--ICSHVFHVDCVDKWLKI---NASCPLCKSEI  409 (423)
Q Consensus       363 ~eC~ICL~~y~d--------ge~lr~L--PC~H~FH~~CId~WL~~---~~tCPlCR~~I  409 (423)
                      .+|-||...|+-        ||..-.+  -|.|.||..||.+||..   ++.||+||+..
T Consensus        21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            469999999973        4433222  49999999999999954   56799999864

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.35  E-value=1.9e-07  Score=96.16  Aligned_cols=49  Identities=31%  Similarity=0.604  Sum_probs=43.1

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ....|.||++.|.+.   ..+||+|.||..||..|+.....||+||..+...
T Consensus        25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            456799999999776   4689999999999999999888999999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.5e-07  Score=75.71  Aligned_cols=46  Identities=35%  Similarity=0.891  Sum_probs=35.7

Q ss_pred             ceeeecccccc------------cCCceEEe--ccCccccHHHHHHHHhcCCCCcccccc
Q 037568          363 AVCCICLAKYV------------DDDELREL--ICSHVFHVDCVDKWLKINASCPLCKSE  408 (423)
Q Consensus       363 ~eC~ICL~~y~------------dge~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~  408 (423)
                      ..|+||..-+-            ..++....  -|+|.||-.||.+||+.+..||||.++
T Consensus        47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence            45999875542            23344443  499999999999999999999999775

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1e-06  Score=85.07  Aligned_cols=53  Identities=28%  Similarity=0.637  Sum_probs=45.1

Q ss_pred             cCCCCceeeecccccccCCceEEeccCccccHHHHHH-HHhcCCC-CcccccccCCCC
Q 037568          358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDK-WLKINAS-CPLCKSEIGDSS  413 (423)
Q Consensus       358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~  413 (423)
                      +...|.+|.||++..++.   ..+||+|+|+..||-. |-+.+.. ||+||+.+.+..
T Consensus       211 ip~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         211 IPLADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            445688999999987776   7899999999999999 9988777 999999876653

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.16  E-value=5.1e-07  Score=98.93  Aligned_cols=49  Identities=39%  Similarity=0.863  Sum_probs=38.5

Q ss_pred             CCCceeeecccccccCCceEEec------cCccccHHHHHHHHhc--CCCCcccccccC
Q 037568          360 GEDAVCCICLAKYVDDDELRELI------CSHVFHVDCVDKWLKI--NASCPLCKSEIG  410 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LP------C~H~FH~~CId~WL~~--~~tCPlCR~~I~  410 (423)
                      .+-.||+||..-..--|  |.||      |+|.||..|+.||++.  +.+||+||.+|.
T Consensus      1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            44568999998876222  4443      8999999999999986  568999998774

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.06  E-value=6.8e-07  Score=70.64  Aligned_cols=48  Identities=33%  Similarity=0.846  Sum_probs=23.7

Q ss_pred             ceeeecccccccCCceEEe-----ccCccccHHHHHHHHhc-----------CCCCcccccccC
Q 037568          363 AVCCICLAKYVDDDELREL-----ICSHVFHVDCVDKWLKI-----------NASCPLCKSEIG  410 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~L-----PC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~  410 (423)
                      .+|.||.+...+++++-.+     .|++.||..|+.+||..           ..+||.|+.+|.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            4699999987744433222     38999999999999942           136999999874

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.06  E-value=2.3e-06  Score=61.25  Aligned_cols=38  Identities=37%  Similarity=0.800  Sum_probs=23.3

Q ss_pred             eeecccccccCCc-eEEeccCccccHHHHHHHHhcC----CCCc
Q 037568          365 CCICLAKYVDDDE-LRELICSHVFHVDCVDKWLKIN----ASCP  403 (423)
Q Consensus       365 C~ICL~~y~dge~-lr~LPC~H~FH~~CId~WL~~~----~tCP  403 (423)
                      |.||.+ |.+.+. -+.|||+|.|..+||+++++.+    -.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 866543 4789999999999999999854    3576

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.94  E-value=3.8e-06  Score=82.35  Aligned_cols=54  Identities=28%  Similarity=0.752  Sum_probs=46.2

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHh-----------------------cCCCCcccccccCCCCCCCC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-----------------------INASCPLCKSEIGDSSSPLV  417 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~~~~~  417 (423)
                      .|.|||--|.+++...+++|-|+||..|+...|.                       ..+.||+||..|......++
T Consensus       117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~slk  193 (368)
T KOG4445|consen  117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSLK  193 (368)
T ss_pred             ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccccee
Confidence            4999999999999999999999999999987761                       13579999999987766654

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.86  E-value=8.3e-06  Score=81.29  Aligned_cols=52  Identities=27%  Similarity=0.629  Sum_probs=39.4

Q ss_pred             Cceeeecccc-cccCC-ceEEeccCccccHHHHHHHH-hcCCCCcccccccCCCC
Q 037568          362 DAVCCICLAK-YVDDD-ELRELICSHVFHVDCVDKWL-KINASCPLCKSEIGDSS  413 (423)
Q Consensus       362 d~eC~ICL~~-y~dge-~lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~  413 (423)
                      +..|+||..+ |-..+ ++..-+|+|.|+..||+..+ .....||.|+..+.+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            4569999997 44443 22333899999999999966 45668999999887765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.82  E-value=7.5e-06  Score=84.15  Aligned_cols=50  Identities=30%  Similarity=0.811  Sum_probs=41.3

Q ss_pred             CCCCceeeecccccccCC-ceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          359 SGEDAVCCICLAKYVDDD-ELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       359 s~ed~eC~ICL~~y~dge-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ..|-.+|++||+.+.+.. -++...|+|-||..|+.+|-  ..+||+||+-..
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            346678999999987764 46677899999999999996  468999998766

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=1.3e-05  Score=81.05  Aligned_cols=46  Identities=37%  Similarity=0.949  Sum_probs=35.9

Q ss_pred             CceeeecccccccCCceEEec-cCccccHHHHHHHHhc---CCCCccccc
Q 037568          362 DAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKI---NASCPLCKS  407 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR~  407 (423)
                      .++|.||-+-+-..+++..+- |+|+||..|+.+|+..   +.+||.||-
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i   53 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI   53 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence            478999944444445666665 9999999999999965   468999993

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.77  E-value=1.4e-05  Score=63.57  Aligned_cols=48  Identities=19%  Similarity=0.431  Sum_probs=38.7

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  412 (423)
                      .-.|.||.+-+.+.   ..+||+|.|-+.||.+||+. +.+||+|+.++...
T Consensus         4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            45699999999998   68899999999999999998 89999999988764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=9.5e-06  Score=77.55  Aligned_cols=45  Identities=31%  Similarity=0.704  Sum_probs=40.4

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccc
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKS  407 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  407 (423)
                      .+...|.||++.|.+.   +.|||+|.|+..||..+......||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            3557799999999999   89999999999999999986678999993

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.74  E-value=1e-05  Score=80.60  Aligned_cols=47  Identities=30%  Similarity=0.653  Sum_probs=43.1

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  413 (423)
                      .|-||.+-|...   ..+||+|.|+.-||.+.|..+..||+|+.++.++.
T Consensus        25 RC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   25 RCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence            499999999988   78899999999999999999999999999887653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.71  E-value=6.5e-06  Score=89.08  Aligned_cols=49  Identities=31%  Similarity=0.642  Sum_probs=44.7

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      ..|.|||..+.++......+|.|+||..||+.|-+.-.+||+||....+
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            4599999999999888888999999999999999999999999986543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=3.9e-05  Score=77.20  Aligned_cols=60  Identities=25%  Similarity=0.534  Sum_probs=47.0

Q ss_pred             CCCCceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCCCCCCCCCCCC
Q 037568          359 SGEDAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSA  421 (423)
Q Consensus       359 s~ed~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~~~~~  421 (423)
                      +++..+|.|||++-.|-   ..|||.|. .+..|.+.---+...||+||++|....+...+.+.
T Consensus       287 ~~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~~~~  347 (349)
T KOG4265|consen  287 SESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVNKED  347 (349)
T ss_pred             ccCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecccccc
Confidence            34456899999986664   79999996 68889888655678899999999887776655543

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=3.1e-05  Score=81.00  Aligned_cols=47  Identities=32%  Similarity=0.658  Sum_probs=38.3

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhc-----CCCCcccccccCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-----NASCPLCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-----~~tCPlCR~~I~~  411 (423)
                      +..|+|||+......   .+-|||+|+..||-..+..     -..||+|+..|..
T Consensus       186 ~~~CPICL~~~~~p~---~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPV---RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccc---ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            788999999876662   3349999999999998854     3579999998866

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=5.7e-05  Score=77.04  Aligned_cols=47  Identities=36%  Similarity=0.977  Sum_probs=37.5

Q ss_pred             ceeeecccccccCCc--eEEeccCccccHHHHHHHHh--cCCCCccccccc
Q 037568          363 AVCCICLAKYVDDDE--LRELICSHVFHVDCVDKWLK--INASCPLCKSEI  409 (423)
Q Consensus       363 ~eC~ICL~~y~dge~--lr~LPC~H~FH~~CId~WL~--~~~tCPlCR~~I  409 (423)
                      .+|+|||+.|+-.-+  +..|.|+|.|-.+||.+||.  ....||+|+.+-
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            469999999986543  44566999999999999994  245799997653

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=7.7e-05  Score=73.52  Aligned_cols=48  Identities=25%  Similarity=0.508  Sum_probs=40.9

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  412 (423)
                      +.+|.||+.+-...   ..|+|+|.|+-.||+-=.+. +.+||+||.+|.++
T Consensus         7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            46799999987666   68999999999999987765 45699999999775

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=8e-05  Score=75.66  Aligned_cols=51  Identities=27%  Similarity=0.777  Sum_probs=39.4

Q ss_pred             CCCceeeecccccccCC----ceEEec-cCccccHHHHHHHH--hc-----CCCCcccccccC
Q 037568          360 GEDAVCCICLAKYVDDD----ELRELI-CSHVFHVDCVDKWL--KI-----NASCPLCKSEIG  410 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge----~lr~LP-C~H~FH~~CId~WL--~~-----~~tCPlCR~~I~  410 (423)
                      ..+.+|.||++...+..    ....|| |+|.|+..||++|=  ++     ...||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            34678999999876653    133456 99999999999998  44     578999998653

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.29  E-value=0.00012  Score=71.79  Aligned_cols=46  Identities=28%  Similarity=0.645  Sum_probs=40.7

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .|-||-+-|...   -+.+|+|.|+.-||..-|..+.-||+||.+-.+.
T Consensus        27 rC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es   72 (391)
T COG5432          27 RCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES   72 (391)
T ss_pred             Hhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence            499999998877   5778999999999999999999999999876443

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.10  E-value=0.00036  Score=79.69  Aligned_cols=54  Identities=33%  Similarity=0.795  Sum_probs=45.1

Q ss_pred             cCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhcC----------CCCcccccccCC
Q 037568          358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN----------ASCPLCKSEIGD  411 (423)
Q Consensus       358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~----------~tCPlCR~~I~~  411 (423)
                      ....|..|.||+.+--.......|-|+|+||..|...-|+++          -+||+|+.+|..
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            345678999999998888888999999999999998877542          379999998864

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=97.01  E-value=0.00032  Score=61.96  Aligned_cols=35  Identities=23%  Similarity=0.609  Sum_probs=30.9

Q ss_pred             CceeeecccccccCCceEEeccC------ccccHHHHHHHH
Q 037568          362 DAVCCICLAKYVDDDELRELICS------HVFHVDCVDKWL  396 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~------H~FH~~CId~WL  396 (423)
                      -.||+||++...+++-+..++|+      |+||.+|+++|=
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            46799999999997778888885      999999999994

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00014  Score=73.01  Aligned_cols=49  Identities=31%  Similarity=0.676  Sum_probs=40.8

Q ss_pred             CceeeecccccccCCceEEec-cCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 037568          362 DAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKI-NASCPLCKSEIGDSS  413 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  413 (423)
                      +..|.|||+-+..-   +..+ |.|-|+.+||.+=|+. +.+||.||+.+...-
T Consensus        43 ~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   43 QVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence            56799999987765   4555 9999999999999974 789999999886653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.85  E-value=0.00035  Score=71.04  Aligned_cols=45  Identities=36%  Similarity=0.814  Sum_probs=38.5

Q ss_pred             ceeeecccccccC-CceEEeccCccccHHHHHHHHhcCC--CCccccc
Q 037568          363 AVCCICLAKYVDD-DELRELICSHVFHVDCVDKWLKINA--SCPLCKS  407 (423)
Q Consensus       363 ~eC~ICL~~y~dg-e~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~  407 (423)
                      .-|..|=+.|-.. +.+-.|||.|+||..|+...|..|.  +||-||+
T Consensus       366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3599999998755 5688999999999999999998775  6999994

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.001  Score=63.29  Aligned_cols=51  Identities=29%  Similarity=0.670  Sum_probs=42.8

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhc--------CCCCcccccccCCCCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--------NASCPLCKSEIGDSSS  414 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~  414 (423)
                      .-|..|--.++.||.+| |-|-|.||.+|+++|-..        ..+||-|..+|.+...
T Consensus        51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            34999999999998776 559999999999999843        3479999999988754

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.00066  Score=70.37  Aligned_cols=50  Identities=28%  Similarity=0.748  Sum_probs=43.7

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ..+.+|+||+.-+.+.   ..+||+|.|+..||++=|..+..||+||..+.+-
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVEL  131 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccc
Confidence            4467899998888877   5679999999999999889999999999998763

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.00047  Score=51.50  Aligned_cols=45  Identities=29%  Similarity=0.675  Sum_probs=32.8

Q ss_pred             CceeeecccccccCCceEEe-ccCcc-ccHHHHH-HHHhcCCCCcccccccC
Q 037568          362 DAVCCICLAKYVDDDELREL-ICSHV-FHVDCVD-KWLKINASCPLCKSEIG  410 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~L-PC~H~-FH~~CId-~WL~~~~tCPlCR~~I~  410 (423)
                      ++||.||++.-.|.    +| -|+|+ .+-+|-. .|-..+.+||+||++|.
T Consensus         7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            36899999876554    34 49997 4556744 44447999999999874

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.00061  Score=61.71  Aligned_cols=33  Identities=24%  Similarity=0.657  Sum_probs=29.3

Q ss_pred             hcCCCCceeeecccccccCCceEEeccCccccH
Q 037568          357 MISGEDAVCCICLAKYVDDDELRELICSHVFHV  389 (423)
Q Consensus       357 ~ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~  389 (423)
                      ++..+..||.|||++++.|+.+..|||--+||+
T Consensus       172 VL~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  172 VLKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             hhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            455566789999999999999999999999997

>PHA02862 5L protein; Provisional

Probab=96.39  E-value=0.0025  Score=56.86  Aligned_cols=43  Identities=28%  Similarity=0.838  Sum_probs=33.7

Q ss_pred             ceeeecccccccCCceEEeccC-----ccccHHHHHHHHhc--CCCCccccccc
Q 037568          363 AVCCICLAKYVDDDELRELICS-----HVFHVDCVDKWLKI--NASCPLCKSEI  409 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~I  409 (423)
                      ..|-||+++-+++    .-||.     ..-|.+|+.+|++.  +..||+||.+.
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            5699999985333    35763     78999999999964  56799999864

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.37  E-value=0.0021  Score=46.87  Aligned_cols=40  Identities=30%  Similarity=0.826  Sum_probs=28.2

Q ss_pred             eeecccccccCCceEEeccC-----ccccHHHHHHHHh--cCCCCccc
Q 037568          365 CCICLAKYVDDDELRELICS-----HVFHVDCVDKWLK--INASCPLC  405 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~--~~~tCPlC  405 (423)
                      |-||+++-++++ .-..||+     -+-|.+|+.+|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            779999977776 3346763     5899999999996  45679988

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.07  E-value=0.0051  Score=55.83  Aligned_cols=46  Identities=28%  Similarity=0.777  Sum_probs=33.8

Q ss_pred             CCCceeeecccccccCCceEEecc--Cc---cccHHHHHHHHhc--CCCCccccccc
Q 037568          360 GEDAVCCICLAKYVDDDELRELIC--SH---VFHVDCVDKWLKI--NASCPLCKSEI  409 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC--~H---~FH~~CId~WL~~--~~tCPlCR~~I  409 (423)
                      ..+.+|-||.++..  +.  .-||  +.   .-|.+|+.+|+..  +..||+|+++.
T Consensus         6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y   58 (162)
T PHA02825          6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY   58 (162)
T ss_pred             CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence            34567999998843  22  2475  44   6799999999964  56799998764

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.06  E-value=0.0013  Score=51.02  Aligned_cols=43  Identities=23%  Similarity=0.658  Sum_probs=21.9

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      .|++|.+-+.+.  +..--|.|.|+..||.+-+.  ..||+|+.+.-
T Consensus         9 rCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw   51 (65)
T PF14835_consen    9 RCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW   51 (65)
T ss_dssp             S-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred             CCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence            499999987665  33446999999999988444  56999998753

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.03  E-value=0.0024  Score=65.25  Aligned_cols=47  Identities=28%  Similarity=0.851  Sum_probs=39.0

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcccccccCCCC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPLCKSEIGDSS  413 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~~  413 (423)
                      -|-||-+.   +..++.=||+|..+..|+..|=..  ..+||.||.+|...+
T Consensus       371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            49999875   455788899999999999999854  578999999986544

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.01  E-value=0.0021  Score=66.75  Aligned_cols=54  Identities=26%  Similarity=0.632  Sum_probs=45.0

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSP  415 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~  415 (423)
                      .++..|.||..-..+.-..  ..|+|.|+..|+.+|+..+..||.|+..+......
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            3456799999999887322  57999999999999999999999999887665543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.78  E-value=0.004  Score=47.29  Aligned_cols=40  Identities=23%  Similarity=0.621  Sum_probs=28.5

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcc
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPL  404 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPl  404 (423)
                      ..|+|.+..|++.  ++...|+|.|-++.|.+||+.  ...||+
T Consensus        12 ~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   12 LKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             cCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            5699999998865  566789999999999999943  557998

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.0056  Score=62.91  Aligned_cols=46  Identities=33%  Similarity=0.748  Sum_probs=38.2

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcC--------CCCcccccc
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN--------ASCPLCKSE  408 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~--------~tCPlCR~~  408 (423)
                      -.|+||+++..-.+-...|||+|+|++.|....+.+.        -.||-|+..
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            4599999997777889999999999999999999542        358877653

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.42  E-value=0.0049  Score=67.68  Aligned_cols=49  Identities=27%  Similarity=0.670  Sum_probs=39.8

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHh-cCCCCcccccccCCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLCKSEIGDSS  413 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~  413 (423)
                      -..|+.|-..+.|-   ....|+|.||.+||.+-+. +...||.|...++.+.
T Consensus       643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            35799999777764   3445999999999999996 4678999999887764

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.00  E-value=0.016  Score=64.37  Aligned_cols=51  Identities=31%  Similarity=0.783  Sum_probs=38.2

Q ss_pred             cCCCCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcC-------CCCcccccc
Q 037568          358 ISGEDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKIN-------ASCPLCKSE  408 (423)
Q Consensus       358 ls~ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~-------~tCPlCR~~  408 (423)
                      ++.+..+|.||++.+..-+.+=.- .|-|+||..||.+|-+..       =.||-|+..
T Consensus       187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            445567899999998876654322 388999999999998541       259999843

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.035  Score=54.53  Aligned_cols=52  Identities=19%  Similarity=0.397  Sum_probs=40.0

Q ss_pred             cCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcccccccCC
Q 037568          358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPLCKSEIGD  411 (423)
Q Consensus       358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~  411 (423)
                      ....+.+|++|-+.-...  ....+|+|.|+--||.+=+.-  ..+||.|-.++.+
T Consensus       235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            345578899998874443  355679999999999997753  4689999988774

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.0021  Score=65.50  Aligned_cols=51  Identities=24%  Similarity=0.675  Sum_probs=46.6

Q ss_pred             eeeecccccccC-CceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          364 VCCICLAKYVDD-DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       364 eC~ICL~~y~dg-e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      .|+||..+|... +++..+-|+|.+|.+||.+||.....||-|+.++.....
T Consensus       198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~  249 (465)
T KOG0827|consen  198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNGF  249 (465)
T ss_pred             hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhhH
Confidence            499999999988 889999999999999999999999999999999877643

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.73  E-value=0.011  Score=59.35  Aligned_cols=49  Identities=27%  Similarity=0.602  Sum_probs=41.3

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ..+|.+|-.=|.|..  .+.-|-|.|++.||-+.|..+.+||.|...|.+.
T Consensus        15 ~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   15 HITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            467999988888774  2234999999999999999999999999888765

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.72  E-value=0.012  Score=49.20  Aligned_cols=32  Identities=25%  Similarity=0.633  Sum_probs=27.0

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHH
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVD  393 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId  393 (423)
                      ++..|++|-..+.. ......||+|.||..|++
T Consensus        77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            34569999999987 567788999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=0.043  Score=53.10  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             CCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCCCCCC
Q 037568          361 EDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPL  416 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~  416 (423)
                      ....|+||.+.+.+-..+..| ||+|+|..+|+.+.++.-..||+|-.++.+.....
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence            456799999999999988888 69999999999999999999999988876655443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.06  E-value=0.024  Score=53.13  Aligned_cols=43  Identities=23%  Similarity=0.532  Sum_probs=37.9

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccccc
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI  409 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I  409 (423)
                      .|-||-.+|+..   ....|+|+|+..|.-+=++...+|-+|-+.-
T Consensus       198 ~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         198 LCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            699999999987   5677999999999999888889999996643

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=93.91  E-value=0.026  Score=59.69  Aligned_cols=50  Identities=24%  Similarity=0.572  Sum_probs=39.2

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHh-----cCCCCcccccccCCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-----INASCPLCKSEIGDSS  413 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~~~  413 (423)
                      +..+|-+|-+.-+|-   .+..|.|.|++-||.++..     .+-+||.|-..+.-+.
T Consensus       535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            456899999875554   5667999999999999883     3678999987765443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.85  E-value=0.03  Score=41.05  Aligned_cols=43  Identities=21%  Similarity=0.512  Sum_probs=21.5

Q ss_pred             eeecccccccCCceEEec--cCccccHHHHHHHHh-cCCCCcccccc
Q 037568          365 CCICLAKYVDDDELRELI--CSHVFHVDCVDKWLK-INASCPLCKSE  408 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LP--C~H~FH~~CId~WL~-~~~tCPlCR~~  408 (423)
                      |.+|.+++ +......+|  |++.....|...-++ .+..||-||.+
T Consensus         1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            77899998 333345566  688888888777775 47899999975

>PHA03096 p28-like protein; Provisional

Probab=93.83  E-value=0.029  Score=55.91  Aligned_cols=36  Identities=25%  Similarity=0.562  Sum_probs=28.6

Q ss_pred             ceeeecccccccCC----ceEEec-cCccccHHHHHHHHhc
Q 037568          363 AVCCICLAKYVDDD----ELRELI-CSHVFHVDCVDKWLKI  398 (423)
Q Consensus       363 ~eC~ICL~~y~dge----~lr~LP-C~H~FH~~CId~WL~~  398 (423)
                      .+|.||++......    .-..|+ |.|.|+..||..|-..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~  219 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE  219 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence            57999999876542    234677 9999999999999843

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.58  E-value=0.038  Score=56.16  Aligned_cols=43  Identities=28%  Similarity=0.575  Sum_probs=32.4

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      .-|.||+++..+   ...+||+|+=+  |..-- +...+||+||..|..
T Consensus       306 ~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  306 DLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL  348 (355)
T ss_pred             CceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence            459999999777   47899999955  65543 335569999998753

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.26  E-value=0.032  Score=53.89  Aligned_cols=44  Identities=32%  Similarity=0.612  Sum_probs=33.3

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      .|.-|..-=. +++...+.|.|+|+..|...=.  ...||+||+.|.
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIR   48 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceee
Confidence            4766655433 8899999999999999965422  338999999863

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=92.57  E-value=0.096  Score=51.97  Aligned_cols=51  Identities=29%  Similarity=0.643  Sum_probs=39.2

Q ss_pred             CceeeecccccccCCc-eEEeccC-----ccccHHHHHHHHh--cCCCCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDE-LRELICS-----HVFHVDCVDKWLK--INASCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~-lr~LPC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~~~  412 (423)
                      +..|-||..+...... .-+.||.     +..|..|+++|+.  .+.+|.+|+......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            4789999998665432 4566874     8889999999997  567899998865443

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.35  E-value=0.071  Score=54.06  Aligned_cols=48  Identities=29%  Similarity=0.537  Sum_probs=41.5

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      .||..|+||...--..   ...||+|.=+..||.+-|-.++.|=.||..+.
T Consensus       420 sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            6788999998764333   56799999999999999999999999999876

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.09  E-value=0.05  Score=53.95  Aligned_cols=46  Identities=24%  Similarity=0.457  Sum_probs=40.3

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .|-||-..|.+.   ....|+|+|+..|--+=++....|++|-+.+-..
T Consensus       243 ~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  243 KCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             cccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence            399999999998   5778999999999999888899999998876543

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=92.01  E-value=0.15  Score=46.47  Aligned_cols=37  Identities=30%  Similarity=0.626  Sum_probs=23.4

Q ss_pred             CCceeeecccccccCCceE---------EeccC-ccccHHHHHHHHh
Q 037568          361 EDAVCCICLAKYVDDDELR---------ELICS-HVFHVDCVDKWLK  397 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr---------~LPC~-H~FH~~CId~WL~  397 (423)
                      ||+.|+|||+--.+...|.         -.=|+ -+=|..|+|+.=+
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            4678999998755542211         11142 4558999999763

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=91.78  E-value=0.23  Score=50.04  Aligned_cols=49  Identities=22%  Similarity=0.455  Sum_probs=37.7

Q ss_pred             cCCCCceeeecccccccCCceEEec-cCccccHHHHHHHHhcCCCCccccccc
Q 037568          358 ISGEDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEI  409 (423)
Q Consensus       358 ls~ed~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I  409 (423)
                      +..+...|++|+..-.++   ..|- -|-+||..||-+.++.+..||+=-.++
T Consensus       296 l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            345567799999996665   2333 389999999999999999999854443

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.22  E-value=0.087  Score=52.34  Aligned_cols=47  Identities=21%  Similarity=0.547  Sum_probs=35.2

Q ss_pred             ceeeecccccccCCceEEec-cCccccHHHHHHHH-hcCCCCccc-ccccCCC
Q 037568          363 AVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWL-KINASCPLC-KSEIGDS  412 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL-~~~~tCPlC-R~~I~~~  412 (423)
                      ..|..|-+-....   ...| |+|.|+.+||..-| .....||.| |++|+-+
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld  324 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD  324 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence            4599988876665   3446 79999999999887 466789999 4455433

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.20  E-value=0.086  Score=52.25  Aligned_cols=43  Identities=26%  Similarity=0.624  Sum_probs=38.6

Q ss_pred             eeecccccccCC-ceEEeccCccccHHHHHHHHhcCCCCccccc
Q 037568          365 CCICLAKYVDDD-ELRELICSHVFHVDCVDKWLKINASCPLCKS  407 (423)
Q Consensus       365 C~ICL~~y~dge-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  407 (423)
                      |.||.+.+-+.. .+..|+|+|.-|..|..+-...+-+||+|.+
T Consensus       161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            999999987775 4678899999999999999888899999988

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.82  E-value=0.16  Score=50.48  Aligned_cols=47  Identities=32%  Similarity=0.719  Sum_probs=38.7

Q ss_pred             ceeeecccccccCCc---eEEeccCccccHHHHHHHHhc-CCCCccccccc
Q 037568          363 AVCCICLAKYVDDDE---LRELICSHVFHVDCVDKWLKI-NASCPLCKSEI  409 (423)
Q Consensus       363 ~eC~ICL~~y~dge~---lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I  409 (423)
                      .+|-||=++|..++.   -|.|-|+|.|...|+.+-+.. ...||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            359999999998753   367789999999999987764 45699999985

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.17  E-value=0.11  Score=51.99  Aligned_cols=43  Identities=28%  Similarity=0.604  Sum_probs=29.4

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      .|--|=..  ..-.-|.+||+|+|+.+|-..  ..-+.||+|-..|.
T Consensus        92 fCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   92 FCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             eecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            35555333  222338999999999999543  44568999977664

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=89.87  E-value=0.12  Score=36.98  Aligned_cols=41  Identities=24%  Similarity=0.639  Sum_probs=22.1

Q ss_pred             eeecccccccCCceEEeccCccccHHHHHHHHhcCC--CCccc
Q 037568          365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA--SCPLC  405 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~--tCPlC  405 (423)
                      |.+|-+-...|.....-.|+=.+|..|++++++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            455666555554333334888899999999997655  79988

; PDB: 3NW0_A 2CT0_A.

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.35  E-value=0.23  Score=45.98  Aligned_cols=49  Identities=31%  Similarity=0.733  Sum_probs=33.6

Q ss_pred             eeeecccccccCC----ceEEeccCccccHHHHHHHHhc-----------CCCCcccccccCCC
Q 037568          364 VCCICLAKYVDDD----ELRELICSHVFHVDCVDKWLKI-----------NASCPLCKSEIGDS  412 (423)
Q Consensus       364 eC~ICL~~y~dge----~lr~LPC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~~  412 (423)
                      .|.||..---+|.    ..--..|+.-||.-|+..||+.           -..||.|-.+|.-.
T Consensus       167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            3666654333332    2234569999999999999953           24799999888543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=89.13  E-value=0.42  Score=47.00  Aligned_cols=54  Identities=17%  Similarity=0.394  Sum_probs=42.4

Q ss_pred             CceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCCCCCC
Q 037568          362 DAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPL  416 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~  416 (423)
                      ...|+|...+|........| ||||+|-..+|++- +....||+|-.+..+.....
T Consensus       113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEE
Confidence            45799999999766666666 89999999999995 43567999988877554433

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.07  E-value=0.067  Score=53.00  Aligned_cols=43  Identities=28%  Similarity=0.634  Sum_probs=31.6

Q ss_pred             CceeeecccccccCCceEEeccCcccc-HHHHHHHHhcCCCCcccccccCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFH-VDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH-~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      +.-|+||++.-.|   ...|+|+|.-- .+|-+    +-..||+||+.|.+
T Consensus       300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGk----rm~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGK----RMNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCCcc---eEEeecCcEEeehhhcc----ccccCchHHHHHHH
Confidence            5679999987444   58899999864 45633    23489999998754

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=89.02  E-value=0.2  Score=37.74  Aligned_cols=45  Identities=20%  Similarity=0.454  Sum_probs=34.2

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  413 (423)
                      .|..|...=.   +-..|||+|+-...|.+-  ++-+-||+|-+++..++
T Consensus         9 ~~~~~~~~~~---~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    9 PCVFCGFVGT---KGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eEEEcccccc---ccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence            4666665433   337899999999999775  56678999999887654

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=87.18  E-value=0.38  Score=53.57  Aligned_cols=51  Identities=25%  Similarity=0.686  Sum_probs=38.4

Q ss_pred             CCCCceeeecccccccCCceEEeccC-----ccccHHHHHHHHhcC--CCCcccccccC
Q 037568          359 SGEDAVCCICLAKYVDDDELRELICS-----HVFHVDCVDKWLKIN--ASCPLCKSEIG  410 (423)
Q Consensus       359 s~ed~eC~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~I~  410 (423)
                      .+++..|-||..+=..++++- =||+     -+-|.+|+-+|+.-.  ..|-+|++++.
T Consensus         9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~   66 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK   66 (1175)
T ss_pred             CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence            345677999999866665542 2664     689999999999754  45999998763

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.08  E-value=0.29  Score=54.99  Aligned_cols=36  Identities=22%  Similarity=0.490  Sum_probs=29.0

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHH
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL  396 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL  396 (423)
                      +.+.+|.+|...+... .-..-||+|.||++||.+=.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            5567899999887665 55677999999999997654

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=86.88  E-value=0.86  Score=46.96  Aligned_cols=27  Identities=26%  Similarity=1.061  Sum_probs=21.3

Q ss_pred             cCccccHHHHHHHHhc-------------CCCCccccccc
Q 037568          383 CSHVFHVDCVDKWLKI-------------NASCPLCKSEI  409 (423)
Q Consensus       383 C~H~FH~~CId~WL~~-------------~~tCPlCR~~I  409 (423)
                      |.-+++.+|+.+|+..             +.+||.||+..
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F  350 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF  350 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence            5677889999999932             45899999874

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.66  E-value=0.39  Score=53.77  Aligned_cols=42  Identities=24%  Similarity=0.733  Sum_probs=33.2

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccccc
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI  409 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I  409 (423)
                      ..|..|--..+-+  ...--|+|.||..|+.   .....||-|+.+.
T Consensus       841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence            4799998886654  3455699999999998   5567899999844

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=86.21  E-value=0.32  Score=54.13  Aligned_cols=45  Identities=36%  Similarity=0.770  Sum_probs=36.7

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcccccccCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPLCKSEIGD  411 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~  411 (423)
                      ..|.||++    .+..-..+|+|.|+.+|+.+-+..  ...||+||..+..
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            78999999    445567789999999999998853  4569999987754

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.67  E-value=0.44  Score=46.60  Aligned_cols=48  Identities=29%  Similarity=0.749  Sum_probs=34.3

Q ss_pred             CceeeecccccccCCce-EEecc-----CccccHHHHHHHHhcC--------CCCccccccc
Q 037568          362 DAVCCICLAKYVDDDEL-RELIC-----SHVFHVDCVDKWLKIN--------ASCPLCKSEI  409 (423)
Q Consensus       362 d~eC~ICL~~y~dge~l-r~LPC-----~H~FH~~CId~WL~~~--------~tCPlCR~~I  409 (423)
                      +..|-||+..=+|+..- =+=||     +|--|..|+..|+..+        -+||-|+.+-
T Consensus        20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            45688999986665321 13376     4999999999999432        2599999864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.64  E-value=0.71  Score=46.94  Aligned_cols=47  Identities=28%  Similarity=0.642  Sum_probs=36.1

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHH--HhcCCCCccccccc
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKW--LKINASCPLCKSEI  409 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~W--L~~~~tCPlCR~~I  409 (423)
                      ++..-|-||-....-.   -.+||+|..+-.|--.-  |-....||+||.+-
T Consensus        59 Een~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          59 EENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            3455699998875543   68899999999996543  56688999999853

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.57  E-value=0.27  Score=53.44  Aligned_cols=48  Identities=35%  Similarity=0.578  Sum_probs=36.7

Q ss_pred             ceeeecccccccCCce-EEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568          363 AVCCICLAKYVDDDEL-RELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       363 ~eC~ICL~~y~dge~l-r~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  413 (423)
                      ..|.||+..|.....+ +-|-|+|.-+..|+.+  ..|++|| |+++=.+..
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De~~~~   60 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDEDSSL   60 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCccccchh
Confidence            4599999999877433 4556999999999987  5688999 887654443

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.31  E-value=0.64  Score=50.48  Aligned_cols=50  Identities=32%  Similarity=0.794  Sum_probs=41.4

Q ss_pred             cCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      +.+....|.||+.+.    ..|..+|.   |..|..+|+..+..||+|...+..+..
T Consensus       475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF  524 (543)
T ss_pred             hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence            445556799999998    55788899   999999999999999999887765543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.14  E-value=0.66  Score=33.94  Aligned_cols=32  Identities=22%  Similarity=0.676  Sum_probs=23.5

Q ss_pred             Eecc-CccccHHHHHHHHhcCCCCcccccccCC
Q 037568          380 ELIC-SHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       380 ~LPC-~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      ...| .|+.+..|+..-|.+...||+|+.+++.
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            4458 5999999999999999999999998865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=83.06  E-value=0.71  Score=44.78  Aligned_cols=50  Identities=26%  Similarity=0.569  Sum_probs=36.5

Q ss_pred             CceeeecccccccCCceEEe--c-cCccccHHHHHHHHhc-CCCCc--ccccccCC
Q 037568          362 DAVCCICLAKYVDDDELREL--I-CSHVFHVDCVDKWLKI-NASCP--LCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~L--P-C~H~FH~~CId~WL~~-~~tCP--lCR~~I~~  411 (423)
                      |..|+||-.+---+-.++.|  | |-|..+..|+|.-+.. .+.||  -|-+-+.+
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK   65 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK   65 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence            55799999874433334444  7 9999999999999965 67899  78554433

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=80.70  E-value=0.55  Score=54.79  Aligned_cols=47  Identities=34%  Similarity=0.684  Sum_probs=38.3

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      -..|.||++....--  ...-|+|.|++.|+..|++.+..||.|+....
T Consensus      1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred             ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence            347999999987321  34559999999999999999999999995443

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=80.56  E-value=1.2  Score=44.33  Aligned_cols=51  Identities=27%  Similarity=0.589  Sum_probs=37.7

Q ss_pred             eeeecccc-cccCCc-eEEeccCccccHHHHHHHHhc-CCCCcccccccCCCCC
Q 037568          364 VCCICLAK-YVDDDE-LRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDSSS  414 (423)
Q Consensus       364 eC~ICL~~-y~dge~-lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~  414 (423)
                      .|++|-.+ |-..+. +..=||+|--+..|+|.-+.. .+.||-|-..+.++.-
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            38899866 444442 233389999999999999865 5689999887776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	423
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		3e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		5e-07
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		3e-06
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		6e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		3e-05
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		3e-05
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		4e-04
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		5e-04

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
           E  +C +C+  +     LR L C+H FH  CVDKWLK N +CP+C+++ G SS
Sbjct: 22  EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           C ICL+   + +++R L C H+FH  CVD+WL  N  CP+C+ +I
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 365 CCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCK 406
           C +CLA+  D +E R L  C H FH +CVD WL  +++CPLC+
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCK 406
           G++  C IC ++YV  D   EL C H FH  CV  WL+ + +CP+C+
Sbjct: 38  GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLC 405
           +C +CL  +   DEL    C H FH  C+ KWL++   CPLC
Sbjct: 17  LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSE 408
           ++GTE E + SG +  C +C   Y   + +R+L C+H+FH  C+  WL+ + SCP+C+  
Sbjct: 5   SSGTE-EHVGSGLE--CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 409 I 409
           +
Sbjct: 62  L 62

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 353 EKERMISGEDAV-------------CCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN 399
           EKE+M + ++ V             C IC   ++   E   L C+H F   C+++W+K  
Sbjct: 31  EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK 87
Query: 400 ASCPLCKSEIGDSSSPLVQDS 420
             CP+C+ +I   +  LV D+
Sbjct: 88  IECPICRKDIKSKTYSLVLDN 108

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 353 EKERMISGEDAV-------------CCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN 399
           EKE+M + ++ V             C IC   ++   E   L C+H F   C+++W+K  
Sbjct: 31  EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK 87
Query: 400 ASCPLCKSEIGDSSSPLVQDS 420
             CP+C+ +I   +  LV D+
Sbjct: 88  IECPICRKDIKSKTYSLVLDN 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-28
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-25
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	7e-24
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	9e-23
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-21
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-20
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-13
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	6e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	8e-11
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-10
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	5e-10
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-08
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	7e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	9e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	9e-06
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	6e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	7e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  105 bits (264), Expect = 2e-28
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 27/101 (26%)

Query: 313 ATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKY 372
            ++ +   LP+Y+F    +                             E  +C +C+  +
Sbjct: 1   GSSGSSGQLPSYRFNPNNH---------------------------QSEQTLCVVCMCDF 33

Query: 373 VDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
                LR L C+H FH  CVDKWLK N +CP+C+++ G SS
Sbjct: 34  ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 97.1 bits (242), Expect = 2e-25
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 354 KERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
           +E      +  C ICL+   + +++R L C H+FH  CVD+WL  N  CP+C+ +I    
Sbjct: 6   EEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65

Query: 414 SP 415
             
Sbjct: 66  PS 67

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 93.3 bits (232), Expect = 7e-24
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 345 GGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPL 404
           G   ++G  KE        +C +CL  +   DEL    C H FH  C+ KWL++   CPL
Sbjct: 1   GSSGSSGKVKE---LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPL 57

Query: 405 CKSEIGDSSS 414
           C   +   + 
Sbjct: 58  CNMPVLQLAQ 67

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 90.9 bits (226), Expect = 9e-23
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 26/100 (26%)

Query: 310 TRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICL 369
              A+ E+I+ALP                               ++    G++  C IC 
Sbjct: 14  NPPASKESIDALPEILVT--------------------------EDHGAVGQEMCCPICC 47

Query: 370 AKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           ++YV  D   EL C H FH  CV  WL+ + +CP+C+   
Sbjct: 48  SEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 86.5 bits (215), Expect = 1e-21
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 359 SGEDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEI 409
             +   C +CLA+  D +E R L  C H FH +CVD WL  +++CPLC+  +
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 83.2 bits (206), Expect = 3e-20
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 345 GGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPL 404
           G   ++GTE+     G    C +C   Y   + +R+L C+H+FH  C+  WL+ + SCP+
Sbjct: 1   GSSGSSGTEEH---VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPV 57

Query: 405 CKSEIGDSSSP 415
           C+  +   ++ 
Sbjct: 58  CRKSLTGQNTA 68

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 80.5 bits (199), Expect = 3e-19
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSE 408
           ++G+        ++  CCIC+    D      L C+H F   C+DKW   + +CP+C+ +
Sbjct: 2   SSGSSGRVKQLTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57

Query: 409 IGDSSS 414
           +  ++ 
Sbjct: 58  MTGANE 63

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           ++     C ICL      +    L C H F   C+ +W++ N +CPLCK  +
Sbjct: 1   MATVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 362 DAVCCICLAKYVDDDEL-RELICSHVFHVDCVDKWLKINASCPLCKSEI 409
            + C ICL        +   L C H+ H  C ++ LK    CPLC    
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 63.0 bits (153), Expect = 6e-13
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 362 DAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEI 409
              C  C A+   +D +     C+H FH  C+  W+K N  CPLC+ + 
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 56.5 bits (136), Expect = 8e-11
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 365 CCICLAKYVDDDELRELI----CSHVFHVDCVDKWLKINASCPLCKSEI 409
           C IC+  Y +  +   LI    C HVF   C+   LK   +CP C+ +I
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 360 GEDAVCCICLAKYVD----DDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
           G    C IC+  Y +       +    C HVF   C+   LK   +CP C+ +I    
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 59.9 bits (144), Expect = 5e-10
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 16/75 (21%)

Query: 361 EDAVCCICLAKYVDDDELRELI-----CSHVFHVDCVDKWLK-----------INASCPL 404
           E+  C IC A  +D  E+  +      C    H  C+++W K               CP 
Sbjct: 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366

Query: 405 CKSEIGDSSSPLVQD 419
           CK+++  S + L+ D
Sbjct: 367 CKAKLSTSFAALLND 381

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 365 CCICLAKYVDDDELRE----LICSHVFHVDCVDKWLKINASCPLCKSEI 409
           C IC+  Y +  +         C HVF   C+   LK   +CP C+ +I
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 52.1 bits (125), Expect = 4e-09
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSE 408
           ++G+      S     C ICL   V    L    C HVF   CV     +   C LC+ E
Sbjct: 2   SSGSSGNTAPSLTVPECAICLQTCVHPVSLP---CKHVFCYLCVKGASWLGKRCALCRQE 58

Query: 409 IGDS 412
           I + 
Sbjct: 59  IPED 62

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 351 GTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410
           G+            C IC   + +    +   C H F   C  +  +    C +C    G
Sbjct: 4   GSSGGSEEEEIPFRCFICRQAFQNPVVTK---CRHYFCESCALEHFRATPRCYICDQPTG 60

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 15/63 (23%)

Query: 361 EDAVCCICLAKYVDDDELRE---------------LICSHVFHVDCVDKWLKINASCPLC 405
               C IC    +D     +                +C+H FH  C+ +WLK    CPL 
Sbjct: 36  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

Query: 406 KSE 408
             E
Sbjct: 96  NRE 98

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 51.4 bits (122), Expect = 2e-08
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 360 GEDAVCCICLAKYVDDDELRE---------------LICSHVFHVDCVDKWLKINASCPL 404
                C IC    +D     +                +C+H FH  C+ +WLK    CPL
Sbjct: 46  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105

Query: 405 CKSE 408
              E
Sbjct: 106 DNRE 109

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 4/73 (5%)

Query: 351 GTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPLCKSE 408
           G+           +C IC +  +         C    H+ CV K+ +      CP C   
Sbjct: 4   GSSGRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDY 61

Query: 409 IGDSSSPLVQDSA 421
                      S 
Sbjct: 62  WPHEIPKSGPSSG 74

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL-KINASCPLCKSEIGDSS 413
           E   C IC+ K  D        CS +    C+ +WL +  A CP C++ +    
Sbjct: 21  EVFRCFICMEKLRDARLCPH--CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDS 420
              +C IC    +D   + E  C H F   C+ +    +  CP C   +   + PL   S
Sbjct: 14  PYILCSICKGYLIDATTITE--CLHTFCKSCIVRHFYYSNRCPKCNIVV-HQTQPLSGPS 70

Query: 421 A 421
           +
Sbjct: 71  S 71

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQD 419
            +  C IC   +++      L C+H F   C+++W+K    CP+C+ +I   +  LV D
Sbjct: 63  NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLD 118

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPL 416
              +C +C   ++D   + E  C H F   C+ ++L+ +  CP+C  ++  +   L
Sbjct: 14  PHLMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 67

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 20/77 (25%)

Query: 355 ERMISGEDAVCCICL---------------AKYVDDDELRELICSHVFHVDCVDKWLK-- 397
           E +    +  C IC+                        R   CSH FH+ C+       
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 398 ---INASCPLCKSEIGD 411
               +  CP CK+  G+
Sbjct: 78  NKDGSLQCPSCKTIYGE 94

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 353 EKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL-KINASCPLCKSEIGD 411
           E    +     +C IC     D   ++   C H+    C+  W       CP C+ EI  
Sbjct: 323 ELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379

Query: 412 SSSPLVQ 418
           +   +V 
Sbjct: 380 TEPIVVD 386

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 359 SGEDAVCCICLAKYVDDDELRE----LICSHVFHVDCVDKWLKINASCPLCKSEI 409
                 C IC+  Y +  +         C HVF   C+   LK   +CP C+ +I
Sbjct: 4   GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 38.2 bits (88), Expect = 9e-04
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 357 MISGEDAVCCICLAKYVD----DDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
            I      C IC+  Y +       +    C HVF   C+   LK   +CP C+ +I
Sbjct: 67  YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           +   C IC   +     + +  CSH +   C+ K+L     CP C   +
Sbjct: 21  DLLRCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 4/67 (5%)

Query: 345 GGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASC 402
             +L               +C IC +  +         C    H+ CV K+ +      C
Sbjct: 163 RAILEMEQYIRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRC 220

Query: 403 PLCKSEI 409
           P C    
Sbjct: 221 PHCNDYW 227

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 329 KKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFH 388
           K N  L ++  +   +     +  +       E   C  C             +C H   
Sbjct: 19  KSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFR---PITTVCQHNVC 75

Query: 389 VDCVDKWLKINA-SCPLCKSEIGDSSSP 415
            DC+D+  +    SCP C+ ++G S + 
Sbjct: 76  KDCLDRSFRAQVFSCPACRYDLGRSYAM 103

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 12/69 (17%)

Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDELRELIC-------SHVFHVDCVDKWL--KIN 399
           ++G+    +      +C IC   + + D+   LI         H  H  C+ +W+     
Sbjct: 2   SSGSSGTSITPSSQDICRIC---HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 58

Query: 400 ASCPLCKSE 408
             C LCK E
Sbjct: 59  RCCELCKYE 67

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDELRE---LICSHVFHVDCVDKWL-KINASCPL 404
           +    K+ + S  +  C IC+      + L E   L C+H     C    + K +  CP 
Sbjct: 2   SMALPKDAIPSLSECQCGICM------EILVEPVTLPCNHTLCKPCFQSTVEKASLCCPF 55

Query: 405 CKSEIGDSSSPLVQDSAQ 422
           C+  +   +    + ++ 
Sbjct: 56  CRRRVSSWTRYHTRRNSL 73

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 361 EDAVCCICLAKY-VDDDELRELICSHVFHVDCVDKWLK-INASCPLCKSEIGDSS 413
           +   C +C+    +DD       C +     C  +     N  CP C+    +  
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 51/392 (13%), Positives = 96/392 (24%), Gaps = 120/392 (30%)

Query: 8   LIRDTETDQYPLLMEQVHRHTDRDHIIDITTTDDAS----------SSSSYD---EQPHR 54
            + + +      + + +    + DHII        +                   E+  R
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 55  -----MASPQHEDIPSTSTGVPSYHSSSSSSNRLNNRSSFMMRGDGYGRRRRSP---LNS 106
                + SP   +    S     Y       +RL N +    +   Y   R  P   L  
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMY---IEQRDRLYNDNQVFAK---YNVSRLQPYLKLRQ 142

Query: 107 GLW-ISVELIVTVS-------QIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPIL 158
            L  +     V +          +A  V LS          +F W+              
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WL-------------- 187

Query: 159 YWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQN 218
               +N +    S  T L     L            I  N  S  +++ + +    + Q 
Sbjct: 188 --NLKNCN----SPETVLEMLQKL---------LYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 219 ALNFGGRLNGLVDH-FKMALDCFFAVWFVVGNVW------IFGGH---------SSPSDA 262
            L    RL  L    ++  L        V+ NV        F               +D 
Sbjct: 233 ELR---RL--LKSKPYENCLL-------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 263 PKLYRLCIVFLTFSCIGYAMP-----FILCATI---------CCCLPCIISVLG--IRE- 305
                   + L    +           +                  P  +S++   IR+ 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 306 ----------DYSQTRGATAETINALPTYKFK 327
                     +  +       ++N L   +++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.71
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.67
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.56
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.55
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.54
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.53
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.49
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.45
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.43
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.41
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.41
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.41
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.4
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.4
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.33
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.33
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.31
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.29
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.26
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.25
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.22
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.21
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.2
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.2
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.19
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.19
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.17
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.12
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.12
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.11
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.11
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.09
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.08
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.08
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.06
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.03
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.99
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.97
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.94
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.93
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.89
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.88
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.88
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.85
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.82
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.82
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.82
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.81
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.76
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.72
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.7
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.69
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.66
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.66
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.66
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.65
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.64
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.5
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.49
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.47
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.39
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.37
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.29
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.27
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.14
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.13
3nw0_A	238	Non-structural maintenance of chromosomes element	97.77
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.77
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.57
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.46
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	93.49
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.86
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	81.24

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.71  E-value=9e-18  Score=137.33  Aligned_cols=78  Identities=33%  Similarity=0.726  Sum_probs=67.1

Q ss_pred             cccccccHHHhhcCCcEEecccCCCCCCCCCCCCCCCCCccccCcchhhhcCCCCceeeecccccccCCceEEeccCccc
Q 037568          308 SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVF  387 (423)
Q Consensus       308 ~~~rgas~~~I~~LP~~ky~~~~~~~~~~~~~~~~~~gg~~~~~t~~er~ls~ed~eC~ICL~~y~dge~lr~LPC~H~F  387 (423)
                      ...+|++++.|++||.+++......                          .+++.+|+||+++|.+++.++.|||+|.|
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~--------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~F   65 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGA--------------------------VGQEMCCPICCSEYVKGDVATELPCHHYF   65 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSS--------------------------SSSCSEETTTTEECCTTCEEEEETTTEEE
T ss_pred             cCCCCCCHHHHHhCCCeeecccccc--------------------------cCCCCCCcccChhhcCCCcEEecCCCChH
Confidence            3568999999999999998753211                          12356799999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCcccccccCC
Q 037568          388 HVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       388 H~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      |..||++||+.+.+||+||+.+..
T Consensus        66 h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           66 HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             HHHHHHHHHHcCCcCcCcCccCCC
Confidence            999999999999999999999865

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2e-17  Score=130.02  Aligned_cols=73  Identities=38%  Similarity=0.953  Sum_probs=61.4

Q ss_pred             cHHHhhcCCcEEecccCCCCCCCCCCCCCCCCCccccCcchhhhcCCCCceeeecccccccCCceEEeccCccccHHHHH
Q 037568          314 TAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVD  393 (423)
Q Consensus       314 s~~~I~~LP~~ky~~~~~~~~~~~~~~~~~~gg~~~~~t~~er~ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId  393 (423)
                      +...|++||.++|+.....                           .++.+|+||+++|.+++.++.|||+|.||..||+
T Consensus         2 s~~~i~~lp~~~~~~~~~~---------------------------~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~   54 (75)
T 1x4j_A            2 SSGSSGQLPSYRFNPNNHQ---------------------------SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVD   54 (75)
T ss_dssp             CCCCCSSCCCEEBCSSSCS---------------------------SSCCEETTTTEECCBTCEEEEETTTEEEETTHHH
T ss_pred             cHhhHhhCCcEEecCcccc---------------------------CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHH
Confidence            3456788999999753211                           2346799999999999999999999999999999


Q ss_pred             HHHhcCCCCcccccccCCCC
Q 037568          394 KWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       394 ~WL~~~~tCPlCR~~I~~~~  413 (423)
                      +||+.+.+||+||+++.+..
T Consensus        55 ~w~~~~~~CP~Cr~~~~~~~   74 (75)
T 1x4j_A           55 KWLKANRTCPICRADSGPSS   74 (75)
T ss_dssp             HHHHHCSSCTTTCCCCCCCC
T ss_pred             HHHHcCCcCcCcCCcCCCCC
Confidence            99999999999999998754

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.6e-15  Score=116.51  Aligned_cols=55  Identities=33%  Similarity=0.808  Sum_probs=49.9

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      .++.+|.||+++|.+++.++.|||+|.||..||++|++.+.+||+||++|.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            3456799999999999999999999999999999999999999999999976544

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.55  E-value=1.3e-15  Score=112.06  Aligned_cols=50  Identities=42%  Similarity=0.986  Sum_probs=46.3

Q ss_pred             CCceeeecccccccCCceEEec-cCccccHHHHHHHHhcCCCCcccccccC
Q 037568          361 EDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ++.+|+||+++|.+++.+..+| |+|.||..||++|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            3567999999999999999998 9999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.54  E-value=5e-15  Score=114.13  Aligned_cols=54  Identities=37%  Similarity=0.930  Sum_probs=49.2

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      ++.+|.||++.|..++.++.|||+|.||..||.+|++.+.+||+||..|.....
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            456799999999999999999999999999999999999999999999876543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.53  E-value=4.7e-15  Score=116.96  Aligned_cols=56  Identities=30%  Similarity=0.859  Sum_probs=50.4

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSP  415 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~  415 (423)
                      .++.+|.||++.|.+++.++.|||+|.||..||.+|++.+.+||+||+.+......
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence            34567999999999999999999999999999999999999999999999776443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.1e-14  Score=116.54  Aligned_cols=50  Identities=32%  Similarity=0.733  Sum_probs=41.1

Q ss_pred             Cceeeecccccc-----------cCCceEEec-cCccccHHHHHHHHhcCCCCcccccccCC
Q 037568          362 DAVCCICLAKYV-----------DDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~-----------dge~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      +.+|+||+++|+           .++.++.+| |+|.||.+||++||+.+.+||+||+++..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            345777777765           456677776 99999999999999999999999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.45  E-value=3.3e-14  Score=104.41  Aligned_cols=50  Identities=30%  Similarity=0.617  Sum_probs=44.0

Q ss_pred             CCceeeecccccccC-CceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          361 EDAVCCICLAKYVDD-DELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dg-e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ++.+|+||+++|.++ +.++.+||+|.||..||++|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            346799999999765 45788899999999999999999999999999875

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.43  E-value=7.6e-14  Score=117.81  Aligned_cols=52  Identities=31%  Similarity=0.618  Sum_probs=43.6

Q ss_pred             CceeeecccccccCC---------------ceEEeccCccccHHHHHHHH-----hcCCCCcccccccCCCC
Q 037568          362 DAVCCICLAKYVDDD---------------ELRELICSHVFHVDCVDKWL-----KINASCPLCKSEIGDSS  413 (423)
Q Consensus       362 d~eC~ICL~~y~dge---------------~lr~LPC~H~FH~~CId~WL-----~~~~tCPlCR~~I~~~~  413 (423)
                      +.+|+|||++|.+++               .++.+||+|.||..||++||     +.+.+||+||+.+....
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            457999999997754               45578999999999999999     45779999999886553

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.41  E-value=8.8e-14  Score=117.26  Aligned_cols=49  Identities=33%  Similarity=0.709  Sum_probs=42.8

Q ss_pred             CCceeeecccccccC---------------CceEEeccCccccHHHHHHHHhcCCCCccccccc
Q 037568          361 EDAVCCICLAKYVDD---------------DELRELICSHVFHVDCVDKWLKINASCPLCKSEI  409 (423)
Q Consensus       361 ed~eC~ICL~~y~dg---------------e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I  409 (423)
                      ++..|+||++.|++.               ..++.+||+|.||..||++||+.+.+||+||+++
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence            356799999999865               1367889999999999999999999999999985

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=110.99  Aligned_cols=53  Identities=30%  Similarity=0.689  Sum_probs=45.1

Q ss_pred             CCCceeeecccccccCCceEEeccC-----ccccHHHHHHHHhcC--CCCcccccccCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICS-----HVFHVDCVDKWLKIN--ASCPLCKSEIGDSS  413 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~I~~~~  413 (423)
                      .++.+|.|||++|++++.+ .+||+     |.||.+||++||+.+  .+||+||+.+.-..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            3456799999999988877 58997     999999999999875  48999999986543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1e-13  Score=106.04  Aligned_cols=52  Identities=29%  Similarity=0.668  Sum_probs=45.3

Q ss_pred             CCCceeeecccccccC----CceEEeccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568          360 GEDAVCCICLAKYVDD----DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dg----e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      .++.+|+||++.|.+.    +.+..++|+|.||..||++|++.+.+||+||.+|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4567799999999874    445788999999999999999999999999998854

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.40  E-value=1.1e-13  Score=106.78  Aligned_cols=54  Identities=28%  Similarity=0.642  Sum_probs=47.2

Q ss_pred             CCCceeeecccccccC----CceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568          360 GEDAVCCICLAKYVDD----DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dg----e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  413 (423)
                      .++.+|+||++.|.+.    +.+..++|+|.||..||++|++.+.+||+||..+....
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            3467799999999874    56688899999999999999999999999999998654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=104.21  Aligned_cols=53  Identities=28%  Similarity=0.638  Sum_probs=46.4

Q ss_pred             CCceeeecccccccC----CceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568          361 EDAVCCICLAKYVDD----DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       361 ed~eC~ICL~~y~dg----e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  413 (423)
                      ++.+|+||++.|.+.    +.+..++|+|.||.+||.+|++.+.+||+||.++....
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            456799999999864    55688899999999999999999999999999987653

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=4.4e-13  Score=103.39  Aligned_cols=50  Identities=32%  Similarity=0.925  Sum_probs=44.9

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      ++.+|.||++.+.+    ..+||+|.||..||.+|++.+.+||+||+.+.....
T Consensus        14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            45679999999887    789999999999999999999999999999986544

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.33  E-value=5.7e-13  Score=102.06  Aligned_cols=50  Identities=32%  Similarity=0.754  Sum_probs=43.7

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ++.+|+||++.+.+.  ...+||+|.||..||.+|++.+.+||+||..+...
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            456799999998753  47889999999999999999999999999998653

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6.6e-13  Score=102.98  Aligned_cols=50  Identities=34%  Similarity=0.622  Sum_probs=44.1

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .++.+|.||++.|.+.   ..+||+|.||..||++|++.+.+||+||..|...
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            3456799999998775   6789999999999999999999999999998654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.29  E-value=2.7e-13  Score=116.24  Aligned_cols=50  Identities=34%  Similarity=0.783  Sum_probs=1.0

Q ss_pred             CCceeeeccccccc-------------CCc--eEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          361 EDAVCCICLAKYVD-------------DDE--LRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~d-------------ge~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ++..|+||+++|++             +++  +..+||+|.||..||++||+.+.+||+||++..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            45679999999986             333  334589999999999999999999999999853

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.9e-12  Score=102.67  Aligned_cols=53  Identities=25%  Similarity=0.599  Sum_probs=46.2

Q ss_pred             CCCceeeecccccccCCc-eEEeccCccccHHHHHHHHhcC---CCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDE-LRELICSHVFHVDCVDKWLKIN---ASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~-lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~  412 (423)
                      .++.+|.||++.|.+++. .+.|||+|.||..||.+|++.+   .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            345679999999998765 6888999999999999999876   7899999988654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=3.8e-12  Score=98.95  Aligned_cols=50  Identities=22%  Similarity=0.610  Sum_probs=43.6

Q ss_pred             CCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568          361 EDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  413 (423)
                      ++.+|.||++.|.+.   ..+ +|+|.||..||.+|++.+.+||+||..+....
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            456799999999874   455 99999999999999999999999999987654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=6.4e-12  Score=97.37  Aligned_cols=51  Identities=27%  Similarity=0.643  Sum_probs=43.3

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHh---cCCCCcccccccCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK---INASCPLCKSEIGDSS  413 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~---~~~tCPlCR~~I~~~~  413 (423)
                      .++.+|.||++.|.+.   ..+||+|.||..||.+|++   .+.+||+||..+....
T Consensus        18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            4567899999999864   5679999999999999997   4668999999987653

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.21  E-value=6.6e-12  Score=98.25  Aligned_cols=52  Identities=19%  Similarity=0.511  Sum_probs=43.6

Q ss_pred             CCCceeeecccccccCCceEEec-cCccccHHHHHHHHhcC--CCCcccccccCCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKIN--ASCPLCKSEIGDSSS  414 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~  414 (423)
                      .++.+|+||++.|.+.   ..|| |+|.||..||.+|++.+  .+||+||+.+.....
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA   67 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred             CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence            3456799999999876   5699 99999999999999876  689999998665443

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=7e-12  Score=99.54  Aligned_cols=47  Identities=21%  Similarity=0.535  Sum_probs=42.4

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ++.+|.||++.|.+.   ..+||+|.||..||.+|++.+.+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            456799999999775   46899999999999999999999999999986

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=9.1e-12  Score=98.28  Aligned_cols=54  Identities=22%  Similarity=0.569  Sum_probs=44.8

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcC--CCCcccccccCCCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN--ASCPLCKSEIGDSSSP  415 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~~  415 (423)
                      ....+|+||.+.+..++...  .|+|.||..||++||+.+  .+||+||++.......
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~   68 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK   68 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred             CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence            34567999999999876444  799999999999999887  8999999988655433

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=8.7e-12  Score=95.15  Aligned_cols=50  Identities=20%  Similarity=0.472  Sum_probs=43.0

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHH-hcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL-KINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~  412 (423)
                      .++.+|+||++.+.+..   .++|+|.||..||.+|+ +.+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            45678999999998773   37999999999999999 5677999999998765

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.19  E-value=7.5e-12  Score=107.14  Aligned_cols=54  Identities=28%  Similarity=0.642  Sum_probs=47.4

Q ss_pred             CCCceeeecccccccC----CceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568          360 GEDAVCCICLAKYVDD----DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS  413 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dg----e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  413 (423)
                      .++.+|+||++.|.+.    +.+..++|+|.||..||++||+.+.+||+||+.+....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            4567899999999874    56688999999999999999999999999999987654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.17  E-value=5.7e-12  Score=110.30  Aligned_cols=47  Identities=30%  Similarity=0.916  Sum_probs=42.4

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      +..|+||++.|.+.   ..|||+|.||..||.+|++.+.+||+||.+|..
T Consensus        53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            45699999999875   678999999999999999999999999999854

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.12  E-value=2.1e-11  Score=104.27  Aligned_cols=53  Identities=28%  Similarity=0.656  Sum_probs=46.1

Q ss_pred             CCCceeeecccccccC----CceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDD----DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dg----e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      +++.+|+||++.|.+.    .....++|+|.||..||++||+.+.+||+||.++.+.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            4456799999999863    4557889999999999999999999999999998765

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4.7e-11  Score=90.10  Aligned_cols=43  Identities=30%  Similarity=0.688  Sum_probs=37.6

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHh---cCCCCccc
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK---INASCPLC  405 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~---~~~tCPlC  405 (423)
                      .++.+|.||++.|.+.   ..|||+|.||..||.+|++   .+.+||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4567899999999875   6679999999999999998   46689998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=3.8e-11  Score=95.08  Aligned_cols=51  Identities=29%  Similarity=0.623  Sum_probs=44.1

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc------CCCCcccccccCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI------NASCPLCKSEIGDSS  413 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~~  413 (423)
                      .++.+|.||++.|.+.   ..|||+|.||..||.+|++.      +..||+||..+....
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            3567899999999875   45799999999999999987      789999999988653

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.11  E-value=4.9e-11  Score=94.45  Aligned_cols=50  Identities=24%  Similarity=0.555  Sum_probs=43.8

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc------CCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI------NASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~  412 (423)
                      .++.+|.||++.|.+.   ..+||+|.||..||.+|++.      +..||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            3467899999999876   47899999999999999987      77899999998765

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.09  E-value=1.5e-11  Score=96.54  Aligned_cols=50  Identities=28%  Similarity=0.554  Sum_probs=43.2

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc-------CCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-------NASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-------~~tCPlCR~~I~~~  412 (423)
                      .++.+|.||++.|.+.   ..|||+|.||..||.+|++.       +.+||+||..+...
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            3467899999999876   45799999999999999986       67899999998764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.09  E-value=1.8e-11  Score=101.48  Aligned_cols=49  Identities=33%  Similarity=0.738  Sum_probs=42.5

Q ss_pred             CCceeeecccccccCCceEE-eccCccccHHHHHHHHhcC-CCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRE-LICSHVFHVDCVDKWLKIN-ASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~-LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~  412 (423)
                      ++..|+||++.|.+.   .. ++|+|.||..||.+|++.+ .+||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            456799999999864   45 8999999999999999987 6999999998654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.08  E-value=5.3e-11  Score=93.53  Aligned_cols=49  Identities=20%  Similarity=0.406  Sum_probs=43.2

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  412 (423)
                      ++..|+||++.|.+.   ..+||+|.||..||.+|++. +.+||+||..+...
T Consensus         7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            456799999999876   56899999999999999987 78999999998754

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.08  E-value=6.2e-11  Score=90.10  Aligned_cols=52  Identities=27%  Similarity=0.551  Sum_probs=42.7

Q ss_pred             Cceeeeccc-ccccCCce-EEeccCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 037568          362 DAVCCICLA-KYVDDDEL-RELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDSS  413 (423)
Q Consensus       362 d~eC~ICL~-~y~dge~l-r~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  413 (423)
                      +.+|+||++ .|.+.... ..++|+|.||..||++|+.. +.+||+||..+.+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            467999999 78776543 45799999999999999764 467999999997654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=4.7e-11  Score=88.23  Aligned_cols=43  Identities=28%  Similarity=0.827  Sum_probs=36.8

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHH---hcCCCCccc
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL---KINASCPLC  405 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL---~~~~tCPlC  405 (423)
                      .++.+|.||++.|.+.   ..|||+|.||..||.+|+   +.+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3467899999999886   458999999999999995   457889998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.06  E-value=3.3e-11  Score=99.20  Aligned_cols=48  Identities=25%  Similarity=0.613  Sum_probs=42.3

Q ss_pred             CCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568          361 EDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      ++.+|.||++.|.+.   ..+ ||+|.||..||.+|++.+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            346799999999875   455 899999999999999999999999999875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.03  E-value=7.8e-11  Score=98.56  Aligned_cols=49  Identities=22%  Similarity=0.754  Sum_probs=42.9

Q ss_pred             CCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ++..|+||++.|.+.   ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            356799999999864   455 9999999999999999999999999998764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.99  E-value=1e-10  Score=100.23  Aligned_cols=48  Identities=27%  Similarity=0.679  Sum_probs=41.8

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCC-CCcccccccCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA-SCPLCKSEIGD  411 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~  411 (423)
                      ++..|+||++.|.+.   ..+||+|.||..||.+|++.+. +||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            346799999999976   5679999999999999998554 99999999976

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.97  E-value=2.9e-10  Score=92.04  Aligned_cols=48  Identities=21%  Similarity=0.536  Sum_probs=41.6

Q ss_pred             CCCceeeecccccccCCceEEec-cCccccHHHHHHHHhcC--CCCcccccccC
Q 037568          360 GEDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKIN--ASCPLCKSEIG  410 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~I~  410 (423)
                      .++..|.||++.|.+.   ..|| |+|.|+..||.+|++.+  .+||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3567899999999876   6789 99999999999999754  58999999873

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.94  E-value=3.2e-10  Score=101.85  Aligned_cols=48  Identities=29%  Similarity=0.698  Sum_probs=41.0

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  411 (423)
                      +..|+||++.|.+.  +..+||+|.||..||++|++. +.+||+||..+..
T Consensus        54 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           54 ELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            45799999999874  334499999999999999987 7889999999853

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.93  E-value=3.5e-10  Score=94.54  Aligned_cols=49  Identities=35%  Similarity=0.652  Sum_probs=41.8

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhcCC---CCcccccccCCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA---SCPLCKSEIGDSS  413 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~---tCPlCR~~I~~~~  413 (423)
                      +.+|+||++.|.+.   ..+||+|.||..||.+|+..+.   +||+||..+....
T Consensus        21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            34699999999876   4479999999999999998754   8999999987654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.89  E-value=1.3e-10  Score=98.15  Aligned_cols=48  Identities=23%  Similarity=0.683  Sum_probs=41.8

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGD  411 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  411 (423)
                      ++.+|.||++.|.+.   ..|||+|.||..||.+|++. +.+||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            456799999999876   67799999999999999976 6789999998853

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.88  E-value=4.6e-10  Score=99.89  Aligned_cols=48  Identities=25%  Similarity=0.632  Sum_probs=42.1

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhcCC-CCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA-SCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~  412 (423)
                      +..|+||++.|.+.   ..|||+|.||..||.+|++.+. +||+||..+...
T Consensus        78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            35699999999876   5589999999999999998654 899999999876

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.88  E-value=4e-10  Score=95.83  Aligned_cols=49  Identities=22%  Similarity=0.476  Sum_probs=42.5

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCC-CCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA-SCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~  412 (423)
                      ++..|+||++.|.+.   ..+||+|.||..||.+|++.+. +||+||..+...
T Consensus        17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            356799999999876   5689999999999999998765 999999998764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.85  E-value=5.6e-10  Score=94.41  Aligned_cols=49  Identities=29%  Similarity=0.582  Sum_probs=42.5

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDSS  413 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  413 (423)
                      +..|+||++.|.+.   ..+||+|.||..||.+|++. +.+||+||..+....
T Consensus        23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            45799999999875   55899999999999999987 789999999987643

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.82  E-value=2e-09  Score=85.54  Aligned_cols=55  Identities=18%  Similarity=0.425  Sum_probs=42.9

Q ss_pred             CCCceeeecccccccCCceEEe--ccCccccHHHHHHHHh-cCCCCcccccccCCCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELREL--ICSHVFHVDCVDKWLK-INASCPLCKSEIGDSSSP  415 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~L--PC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~~~  415 (423)
                      .++.+|+||++.+...+ .+.+  +|+|.|+..|+.+|++ .+..||+||+.+.+....
T Consensus         9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~   66 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV   66 (78)
T ss_dssp             CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred             ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence            35678999999986433 2344  4999999999999984 467899999999876543

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.82  E-value=4.3e-10  Score=83.39  Aligned_cols=48  Identities=21%  Similarity=0.457  Sum_probs=40.5

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      ++..|.||++.|.+.   +.|||+|.||..||.+|   +..||+||+.+.....
T Consensus         5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T 1bor_A            5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence            356799999999876   67899999999999884   6789999999876543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.82  E-value=1e-09  Score=83.73  Aligned_cols=47  Identities=26%  Similarity=0.528  Sum_probs=40.1

Q ss_pred             CCceeeecccccccCCceEEe--ccCcc-ccHHHHHHHHhcCCCCcccccccC
Q 037568          361 EDAVCCICLAKYVDDDELREL--ICSHV-FHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ++.+|.||++.+.+.   ..+  ||+|. |..+|+++|.+.+..||+||++|.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            345799999987665   444  99999 789999999999999999999885

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.81  E-value=1.9e-09  Score=81.46  Aligned_cols=47  Identities=30%  Similarity=0.712  Sum_probs=37.3

Q ss_pred             CCceeeecccccccCCceEEeccC--c---cccHHHHHHHHhc--CCCCcccccccC
Q 037568          361 EDAVCCICLAKYVDDDELRELICS--H---VFHVDCVDKWLKI--NASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~  410 (423)
                      +..+|.||+++.  ++++ .+||+  |   .||..|+++|++.  +.+||+||+.+.
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            346799999983  4445 58964  4   9999999999964  678999998763

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.76  E-value=2.7e-09  Score=108.28  Aligned_cols=49  Identities=27%  Similarity=0.693  Sum_probs=42.9

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHh-cCCCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~  412 (423)
                      ...+|+||++.+.+.   ..+||+|.||..||..|++ .+.+||+||..+...
T Consensus       331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            346899999998664   7899999999999999998 788999999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.72  E-value=1.4e-09  Score=108.17  Aligned_cols=52  Identities=33%  Similarity=0.795  Sum_probs=41.6

Q ss_pred             CCceeeecccccccCCceE-----EeccCccccHHHHHHHHhcC-----------CCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELR-----ELICSHVFHVDCVDKWLKIN-----------ASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr-----~LPC~H~FH~~CId~WL~~~-----------~tCPlCR~~I~~~  412 (423)
                      +..+|+||++.+.++.++-     ..+|+|.||..||.+||+..           .+||+||++|.-+
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            4567999999999854432     34699999999999999752           5799999988644

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.70  E-value=2.5e-09  Score=94.16  Aligned_cols=49  Identities=18%  Similarity=0.350  Sum_probs=42.3

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCC-CCcccccccCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA-SCPLCKSEIGD  411 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~  411 (423)
                      .++..|.||++.|.+.   ..++|+|.||..||.+|++.+. +||+||.++..
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            4567899999999887   5689999999999999998664 89999998743

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.69  E-value=4.5e-09  Score=79.90  Aligned_cols=47  Identities=30%  Similarity=0.564  Sum_probs=39.9

Q ss_pred             CceeeecccccccCCceEEe--ccCcc-ccHHHHHHHHhcCCCCcccccccCC
Q 037568          362 DAVCCICLAKYVDDDELREL--ICSHV-FHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      +.+|.||++...+.   ..+  ||+|. |..+|+.+|.+.+..||+||++|..
T Consensus         7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            35699999986654   345  99998 9999999999989999999999853

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.66  E-value=1.7e-08  Score=83.45  Aligned_cols=50  Identities=14%  Similarity=0.087  Sum_probs=45.0

Q ss_pred             CCCceeeecccccccCCceEEeccC-ccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICS-HVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .++..|+||++-|.|.   ..+||+ |.|...||.+||+.+.+||+||..+...
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            4567899999999998   678999 9999999999999899999999988654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.66  E-value=3.1e-09  Score=90.21  Aligned_cols=48  Identities=23%  Similarity=0.507  Sum_probs=41.3

Q ss_pred             CCCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .++..|+||++.|.+.   ..+ ||+|.||..||.+|++  ..||+||..+...
T Consensus        20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            3467799999999876   566 9999999999999998  8899999998543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.66  E-value=3.1e-09  Score=83.14  Aligned_cols=44  Identities=25%  Similarity=0.635  Sum_probs=38.3

Q ss_pred             CCceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      ++.+|.||++.+.+.   ..|||+|. |+..|+.+|    .+||+||..|..
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            456799999987664   67899999 999999999    899999998864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.65  E-value=1.1e-08  Score=82.42  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=44.5

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .++..|+||++-|.+.   ..+||||.|...||.+|++.+.+||+||..+...
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            3567899999999998   6789999999999999999899999999987643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.64  E-value=1.3e-08  Score=84.55  Aligned_cols=50  Identities=10%  Similarity=0.087  Sum_probs=45.1

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .++..|+||++-|.+.   ..+||||.|...||.+||..+.+||+||.++...
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            4567899999999998   6789999999999999999899999999988653

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=1.7e-08  Score=78.97  Aligned_cols=46  Identities=24%  Similarity=0.604  Sum_probs=37.9

Q ss_pred             CCCceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      .++.+|.||++.+.+.   ..+||+|. |+..|+.+    ...||+||.+|...
T Consensus        23 ~~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            3456799999998765   56899999 99999965    47899999998653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.49  E-value=2.8e-08  Score=89.35  Aligned_cols=49  Identities=22%  Similarity=0.468  Sum_probs=42.3

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcC-CCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN-ASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~  412 (423)
                      ++..|+||++.|.+.   ..++|+|.|+..||.+|++.+ .+||+||..+...
T Consensus        17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            456799999999876   568999999999999999764 4999999998764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=6.4e-08  Score=74.67  Aligned_cols=47  Identities=26%  Similarity=0.603  Sum_probs=38.9

Q ss_pred             CCCCceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCCC
Q 037568          359 SGEDAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       359 s~ed~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ..++.+|.||++...+   +..|||+|. |+..|+..    ...||+||..|...
T Consensus        12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            3456789999998655   478899999 99999984    57899999998764

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.39  E-value=7.8e-08  Score=78.32  Aligned_cols=47  Identities=23%  Similarity=0.665  Sum_probs=39.5

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhc--------CCCCcc--cccc
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--------NASCPL--CKSE  408 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--------~~tCPl--CR~~  408 (423)
                      ..+|.||+++|.+.+.++.++|+|.|+.+|+..+++.        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4579999999988766666689999999999999963        247999  9987

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.1e-07  Score=77.77  Aligned_cols=45  Identities=20%  Similarity=0.456  Sum_probs=38.7

Q ss_pred             CCceeeecccccccCCceEEec-cCccccHHHHHHHHhcC------CCCcc--cccc
Q 037568          361 EDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKIN------ASCPL--CKSE  408 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~------~tCPl--CR~~  408 (423)
                      ++..|+||++-|.+.   ..+| |+|.|...||.+||..+      .+||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            456799999999987   6786 99999999999999764      48999  9865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.37  E-value=1.1e-07  Score=90.85  Aligned_cols=49  Identities=8%  Similarity=0.030  Sum_probs=42.4

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcC-CCCcccccccCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN-ASCPLCKSEIGD  411 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~  411 (423)
                      .++..|+||++-|.+.   ..+||+|.|+..||.+|+..+ .+||+||.++..
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            3466799999999988   678999999999999999864 459999998854

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.29  E-value=1e-07  Score=75.60  Aligned_cols=44  Identities=23%  Similarity=0.651  Sum_probs=37.1

Q ss_pred             CceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      +.+|.||++.+.+   ...+||+|. |+..|+.+|    ..||+||..|...
T Consensus        18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            4579999998765   478899999 999999987    4999999988653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.27  E-value=2.5e-07  Score=69.98  Aligned_cols=56  Identities=13%  Similarity=0.135  Sum_probs=45.9

Q ss_pred             ceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCCCCCCCCCCC
Q 037568          363 AVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSA  421 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~~~~~  421 (423)
                      ..|+||++-++|.   ..+ +|+|.|-+.||.+||+.+.+||+++.++....-...+..+
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~~   60 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSA   60 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC-
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccCC
Confidence            3599999999976   566 8999999999999999889999999998766554444433

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.14  E-value=7.8e-07  Score=81.35  Aligned_cols=50  Identities=8%  Similarity=0.023  Sum_probs=42.6

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcC-CCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN-ASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~  412 (423)
                      .+...|+||++-|.+.   ..+||||.|...||.+|+..+ .+||+|+.++...
T Consensus       104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            3557799999999987   677999999999999999864 4799999987543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.13  E-value=3.8e-07  Score=91.49  Aligned_cols=45  Identities=27%  Similarity=0.686  Sum_probs=39.2

Q ss_pred             CCCceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      .++..|.||++.+.+.   ..|||+|. |+..|+.+|    ..||+||..|..
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            4567899999998764   67899999 999999998    789999998864

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.77  E-value=1.1e-05  Score=76.81  Aligned_cols=54  Identities=24%  Similarity=0.582  Sum_probs=43.1

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCC--CCcccccccCCCCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA--SCPLCKSEIGDSSSP  415 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~~I~~~~~~  415 (423)
                      +...+|.||.+-...|....  .|+|.||..|+++|++.+.  +||.|+.........
T Consensus       178 ~~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~  233 (238)
T 3nw0_A          178 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK  233 (238)
T ss_dssp             TTCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred             CCCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence            34678999999998874333  2999999999999998654  899999987666433

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.77  E-value=6.9e-06  Score=79.06  Aligned_cols=49  Identities=27%  Similarity=0.523  Sum_probs=40.8

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcC--CCCcc--cccccCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN--ASCPL--CKSEIGD  411 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~--~tCPl--CR~~I~~  411 (423)
                      .+..|+||++-|.+.  |+.+.|||.|.+.||.+|++.+  .+||+  |+..+..
T Consensus       180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            456799999999776  4445899999999999999764  47999  9997754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.57  E-value=3e-05  Score=63.92  Aligned_cols=45  Identities=29%  Similarity=0.475  Sum_probs=36.3

Q ss_pred             eeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCC
Q 037568          365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGD  411 (423)
Q Consensus       365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  411 (423)
                      |.+|--.+..  ..|.+||+|.|+.+|+..|.+. ..+||.|+.+|..
T Consensus         4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            6666555443  4699999999999999999965 6889999998864

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=93.49  E-value=0.042  Score=41.82  Aligned_cols=47  Identities=26%  Similarity=0.464  Sum_probs=33.1

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcC----CCCcccccccC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN----ASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~I~  410 (423)
                      .+.+|.||-+   .++.|.-=-|...||..|++..|...    =.||.|+....
T Consensus        11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~   61 (66)
T 2lri_C           11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT   61 (66)
T ss_dssp             TTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred             CCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence            4567999974   24322222488999999999998653    26999987543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=92.86  E-value=0.042  Score=44.40  Aligned_cols=36  Identities=17%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHH-HH
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDK-WL  396 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~-WL  396 (423)
                      ++..|.||+++|.......-++|+|.|...|+.. |-
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4567999999876555556699999999999998 54

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=81.24  E-value=0.33  Score=37.24  Aligned_cols=49  Identities=20%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             ceeeecccccccCCceEEe-ccCccccHHHHHHHHhc----CCCCcccccccCCC
Q 037568          363 AVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKI----NASCPLCKSEIGDS  412 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~----~~tCPlCR~~I~~~  412 (423)
                      ..|.||-..+. ++.+..= -|.--||..|+..-+..    .-.||.|+..+.+.
T Consensus        19 ~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~   72 (75)
T 2k16_A           19 WICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD   72 (75)
T ss_dssp             ECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred             cCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence            45889987753 3322221 38899999999865532    34699998877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	423
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-16
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-11
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	2e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	9e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-07
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	4e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	8e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	6e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-04
d1wesa_	71	g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I	6e-04
d1wewa_	78	g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c	0.001
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 70.7 bits (173), Expect = 2e-16
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 361 EDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEI 409
           +   C +CLA+  D +E R L  C H FH +CVD WL  +++CPLC+  +
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           C ICL    +      L C H F   C+ +W++ N +CPLCK  +
Sbjct: 8   CPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 3e-11
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 361 EDAVCCICLAKYVDD---------------DELRELICSHVFHVDCVDKWLKINASCPLC 405
               C IC    +D                  +   +C+H FH  C+ +WLK    CPL 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 406 KSEI 409
             E 
Sbjct: 80  NREW 83

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 4e-10
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN-ASCPLCKSEIGDSSSPL 416
           +     +C IC     D   ++   C H+    C+  W +     CP C+ EI   + P+
Sbjct: 19  MGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI-KGTEPI 74

Query: 417 VQD 419
           V D
Sbjct: 75  VVD 77

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 2e-09
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 361 EDAVCCICLAKYVDDDELRELI--CSHVFHVDCVDKWLKIN-ASCPLCKSEI 409
           +D  C  C      +  L+ ++  C H     CVD        +CP C + +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           +   C  C A+       + L C H     C++        CP+C++  
Sbjct: 5   QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 361 EDAVCCICLAKYVDDDELRELI--CSHVFHVDCVDKWLKIN--ASCPLCKSEI 409
           +  VC IC  +  ++              H  C+  WL I+   +C +C    
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 365 CCICLAKYVDDD-ELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGD 411
           C +C+     DD       C +     C  +     N  CP C+    +
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 8e-07
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 353 EKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-----INASCPLCKS 407
             E++                     R   CSH FH+ C+           +  CP CK+
Sbjct: 31  CMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

Query: 408 EIGD 411
             G+
Sbjct: 91  IYGE 94

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 359 SGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--------NASCPLCK 406
           S   + C +CL +Y  +       C  +F   C+ +++++          SCP   
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWL---KINASCPLCKSEI 409
           C ICL    +        C H+F   C+ K L   K  + CPLCK++I
Sbjct: 24  CPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDSS 413
           C IC     D     E  C H+F   C+ + LK+  + CP C+     + 
Sbjct: 26  CQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDEL----RELICSHVFHVDCVDKWLKINAS--C 402
           ++G+  E  I   +   C+C    V   E+     E      FH  CV    K      C
Sbjct: 2   SSGSSGEFAIDPNEPTYCLC--NQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYC 59

Query: 403 PLCKSEIGDSS 413
           P C+ + G SS
Sbjct: 60  PKCRGDSGPSS 70

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 21/81 (25%)

Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDELR--ELICSHVFHVDCV-------------- 392
           ++G+  E     E  V C+C      D  ++  +  C    HV CV              
Sbjct: 2   SSGSSGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLP 61

Query: 393 DKWLKINASCPLCKSEIGDSS 413
           + +      C +C+   G SS
Sbjct: 62  ESFY-----CEICRLTSGPSS 77

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
           +   C  C     +   L    C H+F  +CV   +     CP+C +  
Sbjct: 21  KLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCI--GTGCPVCYTPA 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.69
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.45
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.44
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.43
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.41
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.37
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.31
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.11
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.1
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.09
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.99
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.97
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.78
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.71
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.65
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.55
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.39
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	90.49
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	89.19
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	86.11
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	85.14
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	84.54
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	82.75
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	81.92

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.69  E-value=2.8e-18  Score=126.41  Aligned_cols=50  Identities=42%  Similarity=0.986  Sum_probs=46.3

Q ss_pred             CCceeeecccccccCCceEEec-cCccccHHHHHHHHhcCCCCcccccccC
Q 037568          361 EDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ++.+|+|||++|++++.++.+| |+|.||.+||++||+.+.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4567999999999999999886 9999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.45  E-value=1.2e-14  Score=110.92  Aligned_cols=47  Identities=34%  Similarity=0.825  Sum_probs=42.0

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD  411 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  411 (423)
                      .+|+||++.|.+  .++.+||+|.||.+||.+||+.+.+||+||++|..
T Consensus         6 d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            459999999975  45778999999999999999999999999999854

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-14  Score=105.76  Aligned_cols=49  Identities=20%  Similarity=0.414  Sum_probs=42.2

Q ss_pred             eeeecccccccCCc-eEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568          364 VCCICLAKYVDDDE-LRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS  412 (423)
Q Consensus       364 eC~ICL~~y~dge~-lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  412 (423)
                      +|+|||++|++++. ++.++|+|.||.+||++|++. +.+||+||+++.++
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   52 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCCC
Confidence            69999999987765 456689999999999999985 56799999998763

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4.7e-14  Score=117.66  Aligned_cols=54  Identities=30%  Similarity=0.544  Sum_probs=43.0

Q ss_pred             CCceeeeccccccc---------------CCceEEeccCccccHHHHHHHHhcC-----CCCcccccccCCCCC
Q 037568          361 EDAVCCICLAKYVD---------------DDELRELICSHVFHVDCVDKWLKIN-----ASCPLCKSEIGDSSS  414 (423)
Q Consensus       361 ed~eC~ICL~~y~d---------------ge~lr~LPC~H~FH~~CId~WL~~~-----~tCPlCR~~I~~~~~  414 (423)
                      .+.+|+||+++|.+               ...++.++|+|.||.+||++||+.+     .+||+||+.+.....
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~   97 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG   97 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcC
Confidence            35579999999864               2346778899999999999999753     489999998866543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5e-14  Score=112.76  Aligned_cols=48  Identities=33%  Similarity=0.751  Sum_probs=40.9

Q ss_pred             ceeeecccccccCC---------------ceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568          363 AVCCICLAKYVDDD---------------ELRELICSHVFHVDCVDKWLKINASCPLCKSEIG  410 (423)
Q Consensus       363 ~eC~ICL~~y~dge---------------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  410 (423)
                      ..|+||++++.+..               .+..+||+|.||..||++||+.+.+||+||++..
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            34999998886532               3678899999999999999999999999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-13  Score=104.20  Aligned_cols=53  Identities=25%  Similarity=0.540  Sum_probs=42.9

Q ss_pred             CCceeeecccccccCC--ceEEeccCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 037568          361 EDAVCCICLAKYVDDD--ELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDSS  413 (423)
Q Consensus       361 ed~eC~ICL~~y~dge--~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  413 (423)
                      |+.+|+||++++..+.  .+..+||+|.||.+||.+||+. +.+||+||++|.+..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            4567999999875543  3456789999999999999964 568999999987654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.2e-13  Score=104.72  Aligned_cols=51  Identities=25%  Similarity=0.706  Sum_probs=43.0

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDSSS  414 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~  414 (423)
                      +...|.||++.+.+   .+.+||+|.||.+||.+||+. +.+||+||.+|.....
T Consensus        22 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          22 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             CTTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence            34579999998765   478999999999999999975 5789999999976544

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=8.1e-12  Score=91.44  Aligned_cols=48  Identities=10%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             eeeecccccccCCceEEec-cCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          364 VCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      .|+||++-+++.   ..+| |+|.|+.+||.+||+.+.+||+||+++..+.-
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            499999999876   5665 99999999999999999999999999876543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.8e-12  Score=93.37  Aligned_cols=46  Identities=22%  Similarity=0.497  Sum_probs=40.0

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS  414 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  414 (423)
                      .+|.||++.|.+.   +.|||+|.||..||++|   +.+||+||++|..+..
T Consensus         7 l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           7 LRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             SSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            4799999999876   67899999999999876   6789999999976654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.09  E-value=1.8e-11  Score=90.56  Aligned_cols=48  Identities=27%  Similarity=0.661  Sum_probs=37.7

Q ss_pred             CCCceeeecccccccCCceEEecc-----CccccHHHHHHHHh--cCCCCcccccccC
Q 037568          360 GEDAVCCICLAKYVDDDELRELIC-----SHVFHVDCVDKWLK--INASCPLCKSEIG  410 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC-----~H~FH~~CId~WL~--~~~tCPlCR~~I~  410 (423)
                      ++...|.||++++.+.   ...||     .|+||..||.+|+.  .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3457899999998765   23444     59999999999995  4678999998753

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.4e-11  Score=96.41  Aligned_cols=48  Identities=35%  Similarity=0.702  Sum_probs=40.9

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcC---CCCcccccccCCCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN---ASCPLCKSEIGDSS  413 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~~  413 (423)
                      .+|+||++.|.+.   ..+||+|.||..||.+|++.+   ..||+||.++....
T Consensus        22 l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             cCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            4699999999876   458999999999999999764   47999999986544

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=9e-11  Score=93.27  Aligned_cols=47  Identities=30%  Similarity=0.600  Sum_probs=41.1

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS  412 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  412 (423)
                      .+|.||++.|.+.   ..+||+|.|+..||.+|++. +.+||+||.++.+.
T Consensus        24 l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          24 ISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            4699999999876   78899999999999999975 56899999988654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4e-10  Score=90.93  Aligned_cols=47  Identities=21%  Similarity=0.468  Sum_probs=38.9

Q ss_pred             CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ..+|.||++.|.+.  +...+|+|.||..||.+|+.  ..||.||.++...
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             cCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            45799999999876  33458999999999999985  4699999988654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=3.5e-09  Score=81.84  Aligned_cols=49  Identities=20%  Similarity=0.400  Sum_probs=43.1

Q ss_pred             CCceeeecccccccCCceEEeccCccccHHHHHHHHhcC-CCCcccccccCCC
Q 037568          361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN-ASCPLCKSEIGDS  412 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~  412 (423)
                      ++..|+||++-|.+.   ..++|+|.|++.||.+|++.+ .+||.|+.++...
T Consensus         7 ~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            567899999999887   578999999999999999865 6799999998764

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=4.4e-09  Score=81.77  Aligned_cols=50  Identities=8%  Similarity=0.048  Sum_probs=43.0

Q ss_pred             CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568          360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS  412 (423)
Q Consensus       360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  412 (423)
                      .++..|+||++-|.+.   ..+||||.|+..||.+||.. +.+||+|+.++...
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            3567899999999887   57899999999999999975 56799999988654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.6e-08  Score=80.47  Aligned_cols=51  Identities=14%  Similarity=0.092  Sum_probs=44.8

Q ss_pred             CCCCceeeecccccccCCceEEeccC-ccccHHHHHHHHhcCCCCcccccccCCC
Q 037568          359 SGEDAVCCICLAKYVDDDELRELICS-HVFHVDCVDKWLKINASCPLCKSEIGDS  412 (423)
Q Consensus       359 s~ed~eC~ICL~~y~dge~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~  412 (423)
                      ..++..|+||+.-|.|.   ..+||+ |.|.+.||.+||+.+.+||+|+.++...
T Consensus        19 ~P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CcHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            34578899999999998   688876 5799999999999999999999998654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.9e-08  Score=78.20  Aligned_cols=45  Identities=22%  Similarity=0.578  Sum_probs=36.7

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcC--------CCCccccc
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN--------ASCPLCKS  407 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~--------~tCPlCR~  407 (423)
                      .+|.||++++...+..+.++|+|.||.+|+.+|++.+        -+||.|+-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4699999999877777777899999999999999531        25998643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.03  Score=38.23  Aligned_cols=44  Identities=30%  Similarity=0.539  Sum_probs=29.1

Q ss_pred             eeeecccccccCCceEEeccCccccHHHHHHHHhcC----CCCccccc
Q 037568          364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN----ASCPLCKS  407 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~  407 (423)
                      .|.||-..-..+..|.-=-|...||..|++.-+...    =.||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            488997654333222111378999999999877542    25999975

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.19  E-value=0.037  Score=39.57  Aligned_cols=50  Identities=26%  Similarity=0.532  Sum_probs=35.0

Q ss_pred             CceeeecccccccCCceEEe-ccCccccHHHHHHHH---h--cCCCCcccccccCC
Q 037568          362 DAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWL---K--INASCPLCKSEIGD  411 (423)
Q Consensus       362 d~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL---~--~~~tCPlCR~~I~~  411 (423)
                      +..|.||...+.+++.+..= -|+.-||..|++.=.   .  .+-.||.|+..-.+
T Consensus         6 ~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCCC
Confidence            45699999988887654332 489999999986321   1  23479999865444

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.11  E-value=0.033  Score=42.38  Aligned_cols=53  Identities=21%  Similarity=0.490  Sum_probs=32.9

Q ss_pred             CceeeecccccccC-CceEEe-ccCccccHHHHHHHHh-----c---CCCCcccccccCCCCC
Q 037568          362 DAVCCICLAKYVDD-DELREL-ICSHVFHVDCVDKWLK-----I---NASCPLCKSEIGDSSS  414 (423)
Q Consensus       362 d~eC~ICL~~y~dg-e~lr~L-PC~H~FH~~CId~WL~-----~---~~tCPlCR~~I~~~~~  414 (423)
                      +..|.||.....+. ..+..= -|...||..|++..+.     .   .-.||.|+........
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~~   78 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ   78 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhhhh
Confidence            34699998654332 222211 3789999999875542     1   3369999876554443

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.14  E-value=0.5  Score=34.87  Aligned_cols=52  Identities=29%  Similarity=0.536  Sum_probs=34.5

Q ss_pred             ceeeecccccccCCceEEe-ccCccccHHHHH--HHH-h--cCCCCcccccccCCCCC
Q 037568          363 AVCCICLAKYVDDDELREL-ICSHVFHVDCVD--KWL-K--INASCPLCKSEIGDSSS  414 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId--~WL-~--~~~tCPlCR~~I~~~~~  414 (423)
                      ..|+||-..+.+++.+..= -|.--||..|+.  ..- +  .+-.||.|+..-.+...
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp~~~   69 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIM   69 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCBC
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCCccc
Confidence            4577999887766543322 388999999985  222 2  23579999876655443

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.54  E-value=0.14  Score=37.62  Aligned_cols=47  Identities=26%  Similarity=0.619  Sum_probs=27.7

Q ss_pred             CCceeeecccccccCCceEEe--ccCc-cccHHHHHHHHhc----CCCCcccccccC
Q 037568          361 EDAVCCICLAKYVDDDELREL--ICSH-VFHVDCVDKWLKI----NASCPLCKSEIG  410 (423)
Q Consensus       361 ed~eC~ICL~~y~dge~lr~L--PC~H-~FH~~CId~WL~~----~~tCPlCR~~I~  410 (423)
                      ++..++||.... +++.+...  .|.+ -||..||.  |..    +-.||.|+..=.
T Consensus        14 ~e~~~CiC~~~~-~~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~~g   67 (71)
T d1wesa_          14 NEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSG   67 (71)
T ss_dssp             SSCCCSTTCCCC-CSSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSCCS
T ss_pred             CCCCEEEeCCCC-CCCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccccC
Confidence            344577998763 33322222  2444 69999985  432    235999986533

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.75  E-value=0.22  Score=36.84  Aligned_cols=48  Identities=27%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             eeeecccccccCCceEEe---ccCccccHHHHHH----HHh-----cCCCCcccccccCCC
Q 037568          364 VCCICLAKYVDDDELREL---ICSHVFHVDCVDK----WLK-----INASCPLCKSEIGDS  412 (423)
Q Consensus       364 eC~ICL~~y~dge~lr~L---PC~H~FH~~CId~----WL~-----~~~tCPlCR~~I~~~  412 (423)
                      ..|||-..+.++..+ .+   -|..-||..|+.-    .-.     .+-.||.|+..-.++
T Consensus        17 ~~C~C~~~~~~~~~i-~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~ps   76 (78)
T d1wewa_          17 VRCVCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS   76 (78)
T ss_dssp             CCCSSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred             cEeECCCccCCCcEE-EEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCCCC
Confidence            344999887765433 45   3899999999842    111     135799998765544

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.92  E-value=0.23  Score=35.99  Aligned_cols=45  Identities=29%  Similarity=0.529  Sum_probs=29.1

Q ss_pred             ceeeecccccccCCceEEeccCccccHHHHHHHHhcC----CCCcccccccC
Q 037568          363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN----ASCPLCKSEIG  410 (423)
Q Consensus       363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~I~  410 (423)
                      ..|.||-.   .++.+.-=-|...||..|++..|...    =.||.|+..-.
T Consensus         8 ~~C~~C~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   56 (70)
T d1fp0a1           8 TICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   56 (70)
T ss_dssp             SCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCCCC---cCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCc
Confidence            34777753   34422222489999999999888543    24999965443