Citrus Sinensis ID: 037580

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT
Secondary Structure (PSIPRED)
ccccccccEEEcccccccEEcEEEEEEccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcccccccccEEEEEEEEccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccEEEEEEcHHHHHcccccHccccHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
nlepfngmwhlslngkprgqFDVVIVAhnvpscndrkcanqllgssglpQIARQMKRLELSSIWALLAAFEDLLPLGtkllssqsdaphcwtsstlqlygkrnkipqeiiptaTAEKVKTGMLEGVEAalglpksslqkpvyt
Flexible Loop (DISEMBL)
NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSStlqlygkrnkipqeiiPTATAEKVKTGMLEGVeaalglpksslqkpvyt
Low Complexity Region (SEG)
NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT
Disordered region (IsUnstruct)
******GMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAE*V*************************
Disordered Region (DISOPRED)
******G*WHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQ**VY*
Disordered Region (DISEMBL)
NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKS********
Disordered Region (DISPRO)
****FNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVY*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
224130614	496	predicted protein [Populus trichocarpa]	0.951	0.274	0.626	3e-49
449443231	545	PREDICTED: uncharacterized protein LOC10	0.951	0.249	0.589	2e-45
449483109	536	PREDICTED: uncharacterized protein LOC10	0.951	0.253	0.589	2e-45
147823103	2691	hypothetical protein VITISV_000598 [Viti	0.951	0.050	0.577	3e-43
18396966	486	FAD/NAD(P)-binding oxidoreductase domain	0.951	0.279	0.583	4e-43
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.951	0.280	0.581	5e-43
296087896	518	unnamed protein product [Vitis vinifera]	0.951	0.262	0.571	5e-43
225463946	467	PREDICTED: uncharacterized protein LOC10	0.951	0.291	0.571	7e-43
255580905	467	conserved hypothetical protein [Ricinus	0.951	0.291	0.563	1e-42
326493132	469	predicted protein [Hordeum vulgare subsp	0.951	0.289	0.523	1e-38

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 118/166 (71%), Gaps = 30/166 (18%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           LEPFNGMWHLS NGKP GQFD++++AHN       KCAN+LL SSGLP IARQMK L LS
Sbjct: 233 LEPFNGMWHLSENGKPCGQFDIIVIAHN------GKCANRLLASSGLPLIARQMKTLGLS 286

Query: 62  SIWALLAAFEDLLPLGT------------------------KLLSSQSDAPHCWTSSTLQ 97
           SIWALLAAFED LP+ T                        KLL S++++PHCWT  +  
Sbjct: 287 SIWALLAAFEDPLPIPTGATPFEGAFVKGVDSLSWMGNNSAKLLGSKTNSPHCWTFFSTA 346

Query: 98  LYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
            YGKRNK+PQE IPTATAEKVKTGMLEGVEAALGLPK SLQ+P Y+
Sbjct: 347 AYGKRNKVPQENIPTATAEKVKTGMLEGVEAALGLPKDSLQQPFYS 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 109/168 (64%), Gaps = 32/168 (19%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           LEPFNGMWHLS NGKP G FD +++AHN       KCAN+LL +SGLP IARQMKRLELS
Sbjct: 235 LEPFNGMWHLSENGKPCGHFDAIVIAHN------GKCANRLLSTSGLPLIARQMKRLELS 288

Query: 62  SIWALLAAFEDLLPL--------------------------GTKLLSSQSDAPHCWTSST 95
           SIWALLAAFED LP                             K L+ Q D PHCWT  +
Sbjct: 289 SIWALLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWMANNNKKFLNFQKDGPHCWTFLS 348

Query: 96  LQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
              YGK+NK+PQE IPT+TAEKVK  MLEGVEAALGL K SL KP YT
Sbjct: 349 TAAYGKQNKVPQENIPTSTAEKVKKNMLEGVEAALGLSKGSLPKPFYT 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 109/168 (64%), Gaps = 32/168 (19%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           LEPFNGMWHLS NGKP G FD +++AHN       KCAN+LL +SGLP IARQMKRLELS
Sbjct: 235 LEPFNGMWHLSENGKPCGHFDAIVIAHN------GKCANRLLSTSGLPLIARQMKRLELS 288

Query: 62  SIWALLAAFEDLLPL--------------------------GTKLLSSQSDAPHCWTSST 95
           SIWALLAAFED LP                             K L+ Q D PHCWT  +
Sbjct: 289 SIWALLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWMANNNKKFLNFQKDGPHCWTFLS 348

Query: 96  LQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
              YGK+NK+PQE IPT+TAEKVK  MLEGVEAALGL K SL KP YT
Sbjct: 349 TAAYGKQNKVPQENIPTSTAEKVKKNMLEGVEAALGLSKGSLPKPFYT 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823103|emb|CAN66330.1| hypothetical protein VITISV_000598 [Vitis vinifera]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 106/161 (65%), Gaps = 25/161 (15%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           L+PFNGMWHLS NGKP GQ+D +++AHN       KCAN LL SSGLP +ARQMK+LELS
Sbjct: 524 LDPFNGMWHLSENGKPHGQYDAIVIAHN------GKCANHLLASSGLPLVARQMKKLELS 577

Query: 62  SIWALLAAFEDLLPL-------------------GTKLLSSQSDAPHCWTSSTLQLYGKR 102
           SIWALLAAFED LP+                     KLL S S  PHCWT  +   +GKR
Sbjct: 578 SIWALLAAFEDPLPIPFEGAFVKGVDSISWMANNTKKLLHSLSSGPHCWTFFSTAAFGKR 637

Query: 103 NKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
           NK+PQE IPT TAEKVK  ML GVE ALG    SL++P YT
Sbjct: 638 NKVPQENIPTVTAEKVKEAMLAGVETALGHSAGSLKRPFYT 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396966|ref|NP_566235.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6175169|gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gi|15215628|gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gi|28416461|gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis thaliana] gi|332640593|gb|AEE74114.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 111/161 (68%), Gaps = 25/161 (15%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           LEP NGMWHLS NG PRGQFDV+++AHN       KCAN+LL +SGLP +A+QMK+L+LS
Sbjct: 229 LEPLNGMWHLSENGTPRGQFDVIVIAHN------GKCANRLLSASGLPLVAKQMKKLDLS 282

Query: 62  SIWALLAAFEDLLPL---------GTKLLSSQSDA----------PHCWTSSTLQLYGKR 102
           SIWALLAAF+D LP          G + LS   +           PHCWT  +   YGK+
Sbjct: 283 SIWALLAAFDDPLPTVNFEGAFVKGVESLSWMGNNSAKLGNGRTPPHCWTFFSTAAYGKQ 342

Query: 103 NKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
           NK+PQE IPT TAEKVK GML+GVE ALGLP+ SL KPVYT
Sbjct: 343 NKVPQENIPTVTAEKVKAGMLQGVEIALGLPEGSLPKPVYT 383

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 110/160 (68%), Gaps = 24/160 (15%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           LEP NGMWHLS NG PRGQFDV+++AHN       KCAN+LL +SGLP +A+QMK+L+LS
Sbjct: 229 LEPLNGMWHLSENGTPRGQFDVIVIAHN------GKCANRLLSASGLPLVAKQMKKLDLS 282

Query: 62  SIWALLAAFEDLLPL---------GTKLLS---------SQSDAPHCWTSSTLQLYGKRN 103
           SIWALLAAF+D LP          G + LS              PHCWT  +   YGK+N
Sbjct: 283 SIWALLAAFDDPLPTVNFEGAFVKGVESLSWMGNNSAKLGNGRNPHCWTFFSTAAYGKQN 342

Query: 104 KIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
           K+PQE IPT TAEKV+ GML+GVE ALGLP+ SL KPVYT
Sbjct: 343 KVPQENIPTVTAEKVRAGMLQGVEIALGLPEGSLPKPVYT 382

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 105/161 (65%), Gaps = 25/161 (15%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           L+PFNGMWHLS NGKP GQ+D +++AHN       KCAN LL SSGLP +ARQMK+LELS
Sbjct: 209 LDPFNGMWHLSENGKPHGQYDAIVIAHN------GKCANHLLASSGLPLVARQMKKLELS 262

Query: 62  SIWALLAAFEDLLPL-------------------GTKLLSSQSDAPHCWTSSTLQLYGKR 102
           SIWALLAAFED LP+                     KLL S    PHCWT  +   +GKR
Sbjct: 263 SIWALLAAFEDPLPIPFEGAFVKGVDSISWMANNTKKLLHSLGSGPHCWTFFSTAAFGKR 322

Query: 103 NKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
           NK+PQE IPT TAEKVK  ML GVE ALG    SL++P YT
Sbjct: 323 NKVPQENIPTVTAEKVKEAMLAGVETALGHSAGSLKRPFYT 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 105/161 (65%), Gaps = 25/161 (15%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           L+PFNGMWHLS NGKP GQ+D +++AHN       KCAN LL SSGLP +ARQMK+LELS
Sbjct: 209 LDPFNGMWHLSENGKPHGQYDAIVIAHN------GKCANHLLASSGLPLVARQMKKLELS 262

Query: 62  SIWALLAAFEDLLPL-------------------GTKLLSSQSDAPHCWTSSTLQLYGKR 102
           SIWALLAAFED LP+                     KLL S    PHCWT  +   +GKR
Sbjct: 263 SIWALLAAFEDPLPIPFEGAFVKGVDSISWMANNTKKLLHSLGSGPHCWTFFSTAAFGKR 322

Query: 103 NKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
           NK+PQE IPT TAEKVK  ML GVE ALG    SL++P YT
Sbjct: 323 NKVPQENIPTVTAEKVKEAMLAGVETALGHSAGSLKRPFYT 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 110/165 (66%), Gaps = 29/165 (17%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           LEPFNGMWHLS NGKP GQFDV+++AHN       KCAN+LL SSGLP IARQMK+L+LS
Sbjct: 209 LEPFNGMWHLSENGKPCGQFDVIVIAHN------GKCANRLLASSGLPLIARQMKKLDLS 262

Query: 62  SIWALLAAFEDLLPL-----------------------GTKLLSSQSDAPHCWTSSTLQL 98
            IWALLAAFE+ LP+                        +  L SQS+ PHCWT  +   
Sbjct: 263 PIWALLAAFEEPLPIPSGASPFEGAFVKGVDSISWMGNNSMKLFSQSNGPHCWTFFSTAA 322

Query: 99  YGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
           +GKRNK+PQE IP +TAEKVK  MLEGVE ALGL + SL+ P Y+
Sbjct: 323 FGKRNKVPQENIPNSTAEKVKAAMLEGVEVALGLAEGSLKLPFYS 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326493132|dbj|BAJ85027.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 108/168 (64%), Gaps = 32/168 (19%)

Query: 2   LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELS 61
           LEPFNG+W L  + KP+GQ+D V++AHN       KCAN+LL +SGLPQ+ RQMKRLELS
Sbjct: 204 LEPFNGLWRLFESEKPQGQYDAVVIAHN------GKCANRLLSTSGLPQLTRQMKRLELS 257

Query: 62  SIWALLAAFEDLLPL------GT--------------------KLLSSQSDAPHCWTSST 95
           S+WALLAAF+D LP+      GT                    K+   +++ P CWT  +
Sbjct: 258 SVWALLAAFDDPLPIPQDNSYGTFEGAFVKDIDSLSWMANNTQKIFPLETNRPECWTFFS 317

Query: 96  LQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
              YGK+NK+PQE IP ATAEKVK  ML GVE ALGL K SLQ+P YT
Sbjct: 318 TASYGKKNKVPQENIPNATAEKVKREMLGGVELALGLSKGSLQRPFYT 365

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.993	0.292	0.470	5.4e-28

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 5.4e-28, P = 5.4e-28
 Identities = 73/155 (47%), Positives = 90/155 (58%)

Query:     2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQL------LGSSGLPQIARQM 55
             LEP NGMWHLS NG PRGQFDV+++AHN    N    A+ L      +    L  I   +
Sbjct:   229 LEPLNGMWHLSENGTPRGQFDVIVIAHNGKCANRLLSASGLPLVAKQMKKLDLSSIWALL 288

Query:    56 KRLE--LSSI---WALLAAFEDLLPLGTKL--LSSQSDAPHCWTSSTLQLYGKRNKIPQE 108
                +  L ++    A +   E L  +G     L +    PHCWT  +   YGK+NK+PQE
Sbjct:   289 AAFDDPLPTVNFEGAFVKGVESLSWMGNNSAKLGNGRTPPHCWTFFSTAAYGKQNKVPQE 348

Query:   109 IIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
              IPT TAEKVK GML+GVE ALGLP+ SL KPVYT
Sbjct:   349 NIPTVTAEKVKAGMLQGVEIALGLPEGSLPKPVYT 383


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       143   0.00091  102 3  11 22  0.48    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.79u 0.10s 14.89t   Elapsed:  00:00:04
  Total cpu time:  14.79u 0.10s 14.89t   Elapsed:  00:00:06
  Start:  Thu May  9 13:38:49 2013   End:  Thu May  9 13:38:55 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_70000013 hypothetical protein (496 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.89
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.33
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	97.98
PLN02576	496	protoporphyrinogen oxidase	97.91
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.82
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.75
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.23
PLN02268	435	probable polyamine oxidase	96.12
PLN02529	738	lysine-specific histone demethylase 1	95.66
PRK07233	434	hypothetical protein; Provisional	95.59
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.43
PLN02612	567	phytoene desaturase	89.34
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	86.33
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	82.64
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	82.57

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.89  E-value=4e-23  Score=171.84  Aligned_cols=117  Identities=18%  Similarity=0.290  Sum_probs=100.4

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCc--CCCh-HHHHHHhhcccchhhhhHhhhccCCCcc
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGS--SGLP-QIARQMKRLELSSIWALLAAFEDLLPLG   77 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~--~~~p-~la~~~~~~~~~pCWalMlaf~~pl~~~   77 (143)
                      +.+.++.|+|. .+|..+++||.||||+|+|      |+..||.+  ...| .|.+.++.+.|.|||++|+.|++|++.|
T Consensus       129 v~~~~~~W~l~~~~g~~~~~~d~vvla~PAP------Q~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P  202 (331)
T COG3380         129 VARTDNDWTLHTDDGTRHTQFDDVVLAIPAP------QTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRP  202 (331)
T ss_pred             heecCCeeEEEecCCCcccccceEEEecCCC------cchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCC
Confidence            45678899998 7899999999999999966      99999954  1245 4888999999999999999999998876


Q ss_pred             -------------ccCC-CC-CCC-CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhC
Q 037580           78 -------------TKLL-SS-QSD-APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALG  131 (143)
Q Consensus        78 -------------~~~~-~s-gr~-~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g  131 (143)
                                   ..++ ++ ||. ..|.|||||+|+||++|+       +.++|+|+..|..+|+++.|
T Consensus       203 ~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~-------~~~~e~~i~~l~aA~~~~~~  265 (331)
T COG3380         203 WPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHL-------DHPAEQVIVALRAAAQELDG  265 (331)
T ss_pred             CCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhh-------cCCHHHHHHHHHHhhhhccC
Confidence                         1335 44 776 678999999999999999       89999999999999998766

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.33  E-value=1.9e-06  Score=73.77  Aligned_cols=117  Identities=14%  Similarity=0.118  Sum_probs=84.8

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccC-CCc--c
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDL-LPL--G   77 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~p-l~~--~   77 (143)
                      |.+.+++|.+. .+|+ .-.||+||+|+|      ..++..|+... .+.+.+.+.++.+.||+.+++.|+++ +..  .
T Consensus       249 I~~~~~~~~v~~~~g~-~~~ad~VI~t~P------~~~~~~ll~~~-~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~  320 (462)
T TIGR00562       249 LSHRGSNYTLELDNGV-TVETDSVVVTAP------HKAAAGLLSEL-SNSASSHLDKIHSPPVANVNLGFPEGSVDGELE  320 (462)
T ss_pred             EEecCCcEEEEECCCc-EEEcCEEEECCC------HHHHHHHhccc-CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCC
Confidence            45667789987 5563 346899999999      55999999753 45677888889999999999999764 221  1


Q ss_pred             -------c----cC-----CCC---CCC--CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           78 -------T----KL-----LSS---QSD--APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        78 -------~----~~-----~~s---gr~--~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                             .    ..     +++   ++.  +...++++.+..++.++.       +.+.+++.+.+++++++.+|++
T Consensus       321 ~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~-------~~~~ee~~~~v~~~L~~~~gi~  390 (462)
T TIGR00562       321 GFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIV-------DLSENEIINIVLRDLKKVLNIN  390 (462)
T ss_pred             ceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCcccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence                   0    00     211   232  223566677777777666       7789999999999999988865

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=97.98  E-value=3.4e-05  Score=64.27  Aligned_cols=111  Identities=14%  Similarity=0.093  Sum_probs=75.6

Q ss_pred             CcccCCceEEe--cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCCCc--c
Q 037580            2 LEPFNGMWHLS--LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPL--G   77 (143)
Q Consensus         2 l~~~~~~W~L~--~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl~~--~   77 (143)
                      |++++++|.+.  .+|+ ...+|.||+|+|      ..++..||..   +...+.+.++++.+|+.+++.|++|...  +
T Consensus       223 i~~~~~~~~~~~~~~g~-~~~~d~vi~a~p------~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~  292 (419)
T TIGR03467       223 IEANAGGIRALVLSGGE-TLPADAVVLAVP------PRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAVRLPAP  292 (419)
T ss_pred             EEEcCCcceEEEecCCc-cccCCEEEEcCC------HHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCcCCCCC
Confidence            44556665543  3443 456899999999      5599999863   3566677888999999999999998632  2


Q ss_pred             ----c--cC-----CCC--CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           78 ----T--KL-----LSS--QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        78 ----~--~~-----~~s--gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                          .  ..     .+.  ++.+..+++++..    +++.       +.+.|++.+.+++.+++++|..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~e~~~~~~l~~l~~~~~~~  350 (419)
T TIGR03467       293 MVGLVGGLAQWLFDRGQLAGEPGYLAVVISAA----RDLV-------DLPREELADRIVAELRRAFPRV  350 (419)
T ss_pred             eeeecCCceeEEEECCcCCCCCCEEEEEEecc----hhhc-------cCCHHHHHHHHHHHHHHhcCcc
Confidence                0  00     111  2334445666653    3344       5678999999999999988743

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02576 protoporphyrinogen oxidase

Probab=97.91  E-value=4e-05  Score=66.54  Aligned_cols=118  Identities=13%  Similarity=0.085  Sum_probs=79.9

Q ss_pred             CcccCCc-eEEe-c--CCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580            2 LEPFNGM-WHLS-L--NGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PL   76 (143)
Q Consensus         2 l~~~~~~-W~L~-~--~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~   76 (143)
                      |++.+++ |.+. .  +|+....||+||+|+|      ..++..|+... .+.+.+.+..+++.||+.+++.|+++. ..
T Consensus       263 I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P------~~~l~~ll~~~-~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~  335 (496)
T PLN02576        263 LSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAP------LYVVSEMLRPK-SPAAADALPEFYYPPVAAVTTSYPKEAVKR  335 (496)
T ss_pred             EEECCCCcEEEEEecCCCceeEEeCEEEECCC------HHHHHHHhccc-CHHHHHHhccCCCCceEEEEEEEchHHccc
Confidence            3455565 9886 2  3433467899999999      66999999864 677888899999999999999998842 21


Q ss_pred             ------c-------cc----------C-CCC---CCCCC--ceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHH
Q 037580           77 ------G-------TK----------L-LSS---QSDAP--HCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVE  127 (143)
Q Consensus        77 ------~-------~~----------~-~~s---gr~~~--e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~  127 (143)
                            +       ..          . .+.   +|...  -.+++....++...+.       +.+.|++.+.+++.+.
T Consensus       336 ~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~-------~~s~ee~~~~~~~~L~  408 (496)
T PLN02576        336 ERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIA-------SASEEELVEAVDRDLR  408 (496)
T ss_pred             ccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccc-------cCCHHHHHHHHHHHHH
Confidence                  0       00          0 011   22211  1233444444444444       6788999999999999


Q ss_pred             HHhCCC
Q 037580          128 AALGLP  133 (143)
Q Consensus       128 ~~~g~~  133 (143)
                      +++|..
T Consensus       409 ~~~g~~  414 (496)
T PLN02576        409 KLLLKP  414 (496)
T ss_pred             HHhCCC
Confidence            998854

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.82  E-value=8.2e-05  Score=63.09  Aligned_cols=116  Identities=18%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Ccc--
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PLG--   77 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~~--   77 (143)
                      |+..+++|.+. .+|+ ...||.||+|+|      ..++.+|+.   .+.+.+.+.++.+.+|..+++.|+++. ..+  
T Consensus       245 i~~~~~~~~v~~~~g~-~~~~d~vI~a~p------~~~~~~l~~---~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~  314 (451)
T PRK11883        245 IDKSGDGYEIVLSNGG-EIEADAVIVAVP------HPVLPSLFV---APPAFALFKTIPSTSVATVALAFPESATNLPDG  314 (451)
T ss_pred             EEEcCCeEEEEECCCC-EEEcCEEEECCC------HHHHHHhcc---ChhHHHHHhCCCCCceEEEEEEeccccCCCCCc
Confidence            34566789886 5664 357899999999      569999976   345667778889999999999999873 211  


Q ss_pred             -----c--------c--CCCC---CCC-CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           78 -----T--------K--LLSS---QSD-APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        78 -----~--------~--~~~s---gr~-~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                           .        .  .++.   .+. .+...+.+....|......      +.+.+++.+.+++.+++.+|+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~g~~  383 (451)
T PRK11883        315 TGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVV------DATDEELVAFVLADLSKVMGIT  383 (451)
T ss_pred             eEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhc------cCCHHHHHHHHHHHHHHHhCCC
Confidence                 0        0  0111   111 2345777777777655432      6788999999999999998864

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.75  E-value=5.6e-05  Score=65.21  Aligned_cols=119  Identities=19%  Similarity=0.205  Sum_probs=81.7

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC---Ccc
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL---PLG   77 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl---~~~   77 (143)
                      |++++++|.+. .+|+. -.+|.||+|+|      ..++..|+.   .+.+...+.++.+.+|..+++.|+.+.   +..
T Consensus       250 I~~~~~~~~v~~~~g~~-~~ad~VI~a~p------~~~~~~ll~---~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~  319 (463)
T PRK12416        250 VSKQGDRYEISFANHES-IQADYVVLAAP------HDIAETLLQ---SNELNEQFHTFKNSSLISIYLGFDILDEQLPAD  319 (463)
T ss_pred             EEEcCCEEEEEECCCCE-EEeCEEEECCC------HHHHHhhcC---CcchhHHHhcCCCCceEEEEEEechhhcCCCCC
Confidence            45667789887 55543 46899999999      669999986   456777788888999999999999642   211


Q ss_pred             -----cc------C-----CCC---CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           78 -----TK------L-----LSS---QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        78 -----~~------~-----~~s---gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                           ..      .     .++   ++.+...+++...-.|+..+.   +.+.+.+.|++.+..++++++++|+.
T Consensus       320 g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~dee~~~~~~~~L~~~lG~~  391 (463)
T PRK12416        320 GTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVY---ETIKNYSEEELVRVALYDIEKSLGIK  391 (463)
T ss_pred             ceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCc---hhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence                 00      0     111   234456788887655432221   01115578999999999999999975

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.23  E-value=0.02  Score=54.33  Aligned_cols=115  Identities=8%  Similarity=-0.074  Sum_probs=78.1

Q ss_pred             CcccCCceEEecCCCCcCCCcEEEEccCCCCCCChhHHHH----hhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580            2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQ----LLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PL   76 (143)
Q Consensus         2 l~~~~~~W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~----Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~   76 (143)
                      |.+.+++|.+..+|+. -.||.||+|+|.+      +...    +...- .+...+.+.++.+.+|.-+++.|+++. ..
T Consensus       458 I~~~~dgV~V~~~G~~-~~AD~VIvTvPl~------vLk~~~I~F~P~L-P~~K~~AI~~l~yG~~~KV~L~F~~~FW~~  529 (808)
T PLN02328        458 IRYGVDGVIVYAGGQE-FHGDMVLCTVPLG------VLKKGSIEFYPEL-PQRKKDAIQRLGYGLLNKVALLFPYNFWGG  529 (808)
T ss_pred             EEEcCCeEEEEeCCeE-EEcCEEEECCCHH------HHhhcccccCCCC-CHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence            4556678877655543 4689999999944      5542    22221 225667788899999999999999862 21


Q ss_pred             c------ccCCCC--C----------CCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhC
Q 037580           77 G------TKLLSS--Q----------SDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALG  131 (143)
Q Consensus        77 ~------~~~~~s--g----------r~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g  131 (143)
                      .      ...+++  |          ..+...++.+...+++....       +.+.+++.+.+++.+.+++|
T Consensus       530 ~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e-------~lsdeE~v~~vL~~Lr~ifg  595 (808)
T PLN02328        530 EIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFE-------TLSPVESVKRVLQILRGIFH  595 (808)
T ss_pred             CCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHh-------cCCHHHHHHHHHHHHHHHhC
Confidence            1      000111  1          23445788899999988875       56778888999999998887

>PLN02268 probable polyamine oxidase

Probab=96.12  E-value=0.016  Score=49.47  Aligned_cols=117  Identities=9%  Similarity=-0.005  Sum_probs=76.7

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHh-hC--cCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQL-LG--SSGLPQIARQMKRLELSSIWALLAAFEDLL-PL   76 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~L-l~--~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~   76 (143)
                      |.+.+++|.+. .+|+. -.+|.||+|+|.      .+..++ +.  ....+...+.+.++.|.++.-+++.|+++. +-
T Consensus       222 i~~~~~~v~v~~~~g~~-~~ad~VIva~P~------~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~  294 (435)
T PLN02268        222 IVRRYNGVKVTVEDGTT-FVADAAIIAVPL------GVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN  294 (435)
T ss_pred             EEEcCCcEEEEECCCcE-EEcCEEEEecCH------HHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence            45567789887 56643 367999999994      466543 21  110123356677888999999999999862 21


Q ss_pred             c------cc-----C--CCCCC-CCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           77 G------TK-----L--LSSQS-DAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        77 ~------~~-----~--~~sgr-~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                      .      ..     .  .+..+ .+....+......++++..       +.+.+++.+.+++.+.++++.
T Consensus       295 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~-------~~~~~e~~~~v~~~L~~~~~~  357 (435)
T PLN02268        295 VEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIE-------KLSDEAAANFAMSQLKKMLPD  357 (435)
T ss_pred             CceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHH-------hCCHHHHHHHHHHHHHHHcCC
Confidence            0      00     0  00112 2334677788888877765       678889999999999988763

>PLN02529 lysine-specific histone demethylase 1

Probab=95.66  E-value=0.078  Score=49.85  Aligned_cols=116  Identities=9%  Similarity=-0.002  Sum_probs=76.7

Q ss_pred             CcccCCceEEecCCCCcCCCcEEEEccCCCCCCChhHHHHh---hCcCCChHHHHHHhhcccchhhhhHhhhccCC-Cc-
Q 037580            2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQL---LGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PL-   76 (143)
Q Consensus         2 l~~~~~~W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~L---l~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~-   76 (143)
                      |.+.+++|.+..+++. -.+|+||+|+|      ..+....   +.+...+...+.+.++.+.++.-+++.|+++. +. 
T Consensus       378 I~~~~dGVtV~t~~~~-~~AD~VIVTVP------lgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~  450 (738)
T PLN02529        378 IKYGNDGVEVIAGSQV-FQADMVLCTVP------LGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEE  450 (738)
T ss_pred             EEEcCCeEEEEECCEE-EEcCEEEECCC------HHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCC
Confidence            4556678888743322 35799999999      4466532   12111124456778889999999999999872 21 


Q ss_pred             -c----c-----cCC------CCCC-CCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhC
Q 037580           77 -G----T-----KLL------SSQS-DAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALG  131 (143)
Q Consensus        77 -~----~-----~~~------~sgr-~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g  131 (143)
                       .    .     ...      +..+ .+...++.....++++...       ..+.+++.+.+++.+.+++|
T Consensus       451 ~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le-------~lsdeeii~~vl~~L~~ifg  515 (738)
T PLN02529        451 LDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFE-------NTDPSTLLHRVLSVLRGIYN  515 (738)
T ss_pred             CCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHh-------cCCHHHHHHHHHHHHHHHhC
Confidence             1    0     000      0011 2334788888888887765       56788999999999998887

>PRK07233 hypothetical protein; Provisional

Probab=95.59  E-value=0.046  Score=45.89  Aligned_cols=65  Identities=14%  Similarity=0.223  Sum_probs=46.9

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL   74 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl   74 (143)
                      |++++++|.+. .+|+ .-.+|.||+|+|      ..++..|++.. .+...+.+..+.+.+++.+.+.|++++
T Consensus       224 i~~~~~~~~~~~~~~~-~~~ad~vI~a~p------~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  289 (434)
T PRK07233        224 VVIDGGGVTGVEVDGE-EEDFDAVISTAP------PPILARLVPDL-PADVLARLRRIDYQGVVCMVLKLRRPL  289 (434)
T ss_pred             EEEcCCceEEEEeCCc-eEECCEEEECCC------HHHHHhhcCCC-cHHHHhhhcccCccceEEEEEEecCCC
Confidence            34456677654 4443 345899999999      55889988642 345556677778889999999999875

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.43  E-value=0.12  Score=41.95  Aligned_cols=115  Identities=19%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHH--hhCcCCChH-HHHHHhhcccchhhhhHhhhccCCCcc
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQ--LLGSSGLPQ-IARQMKRLELSSIWALLAAFEDLLPLG   77 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~--Ll~~~~~p~-la~~~~~~~~~pCWalMlaf~~pl~~~   77 (143)
                      |+++++++.+. .+|+ .-.||.||+|+|      ...+..  +++.  .+. ..+.+..+.+.+.-.+.+.|+++....
T Consensus       235 I~~~~~~v~v~~~~g~-~~~ad~VI~a~p------~~~l~~i~~~p~--l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~  305 (450)
T PF01593_consen  235 IEREDGGVTVTTEDGE-TIEADAVISAVP------PSVLKNILLLPP--LPEDKRRAIENLPYSSVSKVFLGFDRPFWPP  305 (450)
T ss_dssp             EEEESSEEEEEETTSS-EEEESEEEE-S-------HHHHHTSEEEST--SHHHHHHHHHTEEEEEEEEEEEEESSGGGGS
T ss_pred             ccccccccccccccce-EEecceeeecCc------hhhhhhhhhccc--ccccccccccccccCcceeEEEeeecccccc
Confidence            45667788887 6664 566899999999      667774  4442  444 445667788888889999998863221


Q ss_pred             ----------cc--C-----CCC---CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           78 ----------TK--L-----LSS---QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        78 ----------~~--~-----~~s---gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                                ..  .     .++   ++.+....+.-....+..+..       +.+.|++.+.+++.++++++.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~e~~~~~~~~~L~~~~~~  373 (450)
T PF01593_consen  306 DIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWD-------DLSDEEILERVLDDLRKILPG  373 (450)
T ss_dssp             TTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHT-------TSCHHHHHHHHHHHHHHHHTT
T ss_pred             cccccceecccCccccccccccccCcccccCCcceeeeeccccchhc-------ccchhhhHHHHHHHhhhcccc
Confidence                      01  0     111   222233444444555555554       678899999999999999873

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02612 phytoene desaturase

Probab=89.34  E-value=1.4  Score=39.85  Aligned_cols=105  Identities=13%  Similarity=0.034  Sum_probs=62.0

Q ss_pred             cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCC-hHHHHHHhhcccchhhhhHhhhccCCCcc------c--cC---
Q 037580           13 LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGL-PQIARQMKRLELSSIWALLAAFEDLLPLG------T--KL---   80 (143)
Q Consensus        13 ~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~-p~la~~~~~~~~~pCWalMlaf~~pl~~~------~--~~---   80 (143)
                      .+|+.+ .+|.||+|+|      ...+..|+..... ..+.+.+......|+-.+.+.|++|+..+      .  ..   
T Consensus       348 ~~G~~~-~ad~VI~a~p------~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~  420 (567)
T PLN02612        348 TNGSVV-EGDVYVSATP------VDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSV  420 (567)
T ss_pred             CCCcEE-ECCEEEECCC------HHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCcee
Confidence            455433 4699999999      5588888764211 25556666677888999999999987421      0  00   


Q ss_pred             --C-CC----CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           81 --L-SS----QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        81 --~-~s----gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                        + +.    .+++.. .++.+.-.=..+..       +.+.|++.+.+++.+++++|.
T Consensus       421 ~~d~S~~~~~~~~~~~-~ll~~~~~~a~~~~-------~~sdeei~e~vl~~L~~lfp~  471 (567)
T PLN02612        421 YADMSTTCKEYYDPNK-SMLELVFAPAEEWI-------SRSDEDIIDATMKELAKLFPD  471 (567)
T ss_pred             ehhhhhcchhhcCCCC-eEEEEEEEcChhhh-------cCCHHHHHHHHHHHHHHHCCc
Confidence              0 00    011112 22222210011112       457789999999999998864

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=86.33  E-value=3.4  Score=36.86  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=42.6

Q ss_pred             cccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccC
Q 037580            3 EPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDL   73 (143)
Q Consensus         3 ~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~p   73 (143)
                      .+.+.+|.+. .+|.. -.||.||+|.|      .+...+||+.   ..+.+.+..+..+..=++.++|+.+
T Consensus       239 ~~~~~~~~~~~~~g~~-~~~D~VI~t~p------~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~~~  300 (444)
T COG1232         239 DKKGAGKTIVDVGGEK-ITADGVISTAP------LPELARLLGD---EAVSKAAKELQYTSVVTVVVGLDEK  300 (444)
T ss_pred             EEcCCccEEEEcCCce-EEcceEEEcCC------HHHHHHHcCC---cchhhhhhhccccceEEEEEEeccc
Confidence            3444555554 44433 66899999999      5599999984   3555666667666777788888875

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=82.64  E-value=6.1  Score=35.71  Aligned_cols=119  Identities=12%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             ccCCceEEe---cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccC-CCcc--
Q 037580            4 PFNGMWHLS---LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDL-LPLG--   77 (143)
Q Consensus         4 ~~~~~W~L~---~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~p-l~~~--   77 (143)
                      ...+.|.+.   .++..+-.++.++.++|      +.-.+.||... .+.++..+..+.+.|..+|-+.|+.+ ...+  
T Consensus       278 ~~~~~~~~tl~~~~~~~~~~~~~~~~t~~------~~k~a~ll~~~-~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~  350 (491)
T KOG1276|consen  278 SRSGNWSLTLVDHSGTQRVVVSYDAATLP------AVKLAKLLRGL-QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQ  350 (491)
T ss_pred             cccCCceeEeEcCCCceeeeccccccccc------hHHhhhhcccc-chhhhhhhhcCCCCceEEEEEeccCcccccccc
Confidence            344679986   66777778888889999      55899999874 88999999999999999999999885 2221  


Q ss_pred             -----cc--C-----------CCC---CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCCC
Q 037580           78 -----TK--L-----------LSS---QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPK  134 (143)
Q Consensus        78 -----~~--~-----------~~s---gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~~  134 (143)
                           .+  .           ++.   .|+++..-++----.|++ |-   + +--...|+..+...++++..+|+..
T Consensus       351 GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~-n~---~-~~~~S~ee~~~~v~~alq~~Lgi~~  423 (491)
T KOG1276|consen  351 GFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGST-NT---S-LAVPSPEELVNAVTSALQKMLGISN  423 (491)
T ss_pred             cceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccc-cC---c-CCCCCHHHHHHHHHHHHHHHhCCCC
Confidence                 11  0           222   344444555555555666 32   1 1145788889999999999999874

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=82.57  E-value=0.75  Score=40.56  Aligned_cols=51  Identities=10%  Similarity=0.091  Sum_probs=38.3

Q ss_pred             CCcEEEEccCCCCCCChhHHHHhhCcCC-ChHHHHHHhhcccchhhhhHhhhccCCCc
Q 037580           20 QFDVVIVAHNVPSCNDRKCANQLLGSSG-LPQIARQMKRLELSSIWALLAAFEDLLPL   76 (143)
Q Consensus        20 ~FD~VVva~P~p~~~~~~qA~~Ll~~~~-~p~la~~~~~~~~~pCWalMlaf~~pl~~   76 (143)
                      .+|+||+|+|      ...+.+||+... .....+.+..+...||=++-+.|+.++..
T Consensus       272 ~aD~VVlA~p------~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~  323 (474)
T TIGR02732       272 KADAYVAACD------VPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTE  323 (474)
T ss_pred             ECCEEEECCC------hHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEecccccc
Confidence            4799999999      559999997420 12344566777788999999999987654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.46
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.22
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.65
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.5
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.25
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	95.74
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	95.2
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	94.22
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	93.64
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	91.15
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	90.52
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	90.22
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	84.1
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	83.9
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	82.25

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.46  E-value=8.1e-14  Score=112.62  Aligned_cols=116  Identities=19%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCCh----HHHHHHhhcccchhhhhHhhhccC--C
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLP----QIARQMKRLELSSIWALLAAFEDL--L   74 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p----~la~~~~~~~~~pCWalMlaf~~p--l   74 (143)
                      |++++++|.+. .+|+. -.||.||+|+|      ++|+.+||... .|    ...+.+..+++.|||++|++|+++  +
T Consensus       135 i~~~~~~~~v~~~~g~~-~~ad~vV~A~p------~~~~~~ll~~~-~~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~  206 (342)
T 3qj4_A          135 INLRDDKWEVSKQTGSP-EQFDLIVLTMP------VPEILQLQGDI-TTLISECQRQQLEAVSYSSRYALGLFYEAGTKI  206 (342)
T ss_dssp             EEECSSSEEEEESSSCC-EEESEEEECSC------HHHHTTCBSTH-HHHSCHHHHHHHHTCCBCCEEEEEEECSSCC--
T ss_pred             EEEcCCEEEEEECCCCE-EEcCEEEECCC------HHHHHHHhccc-ccccCHHHHHHHhcCCccccEEEEEEECCCCcc
Confidence            45677899997 66643 36899999999      66999999742 22    457888999999999999999975  3


Q ss_pred             Ccc--------cc-C-----CCC--CCC---CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           75 PLG--------TK-L-----LSS--QSD---APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        75 ~~~--------~~-~-----~~s--gr~---~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                      +.+        .. +     +++  +|.   +..+||+|++.+|+++|+       +.+.|++.+.++++|++++|.
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~g~  276 (342)
T 3qj4_A          207 DVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYL-------EHSIEDVQELVFQQLENILPG  276 (342)
T ss_dssp             CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTT-------TSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhh-------cCCHHHHHHHHHHHHHHhccC
Confidence            332        01 1     222  443   346999999999999998       889999999999999999984

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.05  E-value=7.8e-06  Score=68.03  Aligned_cols=121  Identities=17%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             CcccCCc-eEEecCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Ccc--
Q 037580            2 LEPFNGM-WHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PLG--   77 (143)
Q Consensus         2 l~~~~~~-W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~~--   77 (143)
                      |++++++ |.+..+|. .-.+|.||+|+|      +.++.+||... .+.+.+.+..+.+.+|+.+++.|+++. +..  
T Consensus       260 i~~~~~~~~~v~~~~~-~~~ad~vv~a~p------~~~~~~ll~~~-~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~  331 (477)
T 3nks_A          260 LSLQAEGRWKVSLRDS-SLEADHVISAIP------ASVLSELLPAE-AAPLARALSAITAVSVAVVNLQYQGAHLPVQGF  331 (477)
T ss_dssp             EEECGGGCEEEECSSC-EEEESEEEECSC------HHHHHHHSCGG-GHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSS
T ss_pred             EEEcCCceEEEEECCe-EEEcCEEEECCC------HHHHHHhcccc-CHHHHHHHhcCCCCcEEEEEEEECCCCCCCCCc
Confidence            3455556 99874443 245899999999      66999999764 678888889999999999999999873 211  


Q ss_pred             ---ccC-----------CCC---CC--C-CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           78 ---TKL-----------LSS---QS--D-APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        78 ---~~~-----------~~s---gr--~-~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                         ...           +++   ++  . +...++++...+|..++..   ...+.+.+++.+.+++.|++++|+.
T Consensus       332 g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~---~~~~~~~~~~~~~~~~~L~~~~g~~  404 (477)
T 3nks_A          332 GHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEA---SGCVLSQELFQQRAQEAAATQLGLK  404 (477)
T ss_dssp             EEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHH---SSCCCCHHHHHHHHHHHHHHHHCCC
T ss_pred             eEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCcccccccc---ccCCCCHHHHHHHHHHHHHHHhCCC
Confidence               000           111   12  1 3345678888899887630   1113478999999999999999874

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.65  E-value=6.8e-05  Score=62.52  Aligned_cols=112  Identities=16%  Similarity=0.158  Sum_probs=76.0

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCCCccc--
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGT--   78 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl~~~~--   78 (143)
                      |++++++|.+. .+|  .-.+|.||+|+|      +.++.+|+...  + + +.+..+.+.||+.+++.|+++...+.  
T Consensus       260 i~~~~~~~~v~~~~g--~~~ad~vV~a~p------~~~~~~ll~~~--~-~-~~~~~~~~~~~~~v~l~~~~~~~~~~~g  327 (475)
T 3lov_A          260 ISREDGRYRLKTDHG--PEYADYVLLTIP------HPQVVQLLPDA--H-L-PELEQLTTHSTATVTMIFDQQQSLPIEG  327 (475)
T ss_dssp             EEEETTEEEEECTTC--CEEESEEEECSC------HHHHHHHCTTS--C-C-HHHHTCCEEEEEEEEEEEECCSSCSSSS
T ss_pred             EEEeCCEEEEEECCC--eEECCEEEECCC------HHHHHHHcCcc--C-H-HHHhcCCCCeEEEEEEEECCcCCCCCCC
Confidence            45667789997 666  456899999999      66999998742  2 2 67788899999999999999753210  


Q ss_pred             -----cCC-----------CC---CCCCCceEEE--EeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           79 -----KLL-----------SS---QSDAPHCWTS--STLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        79 -----~~~-----------~s---gr~~~e~Wvl--hAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                           ...           +.   .+. ++.-++  .....+++.+.       +.+.|++.+.+++.+++++|..
T Consensus       328 ~g~l~~~~~~~~~~~~~~~s~~~~~~~-p~~~~l~~~~~~~~~~~~~-------~~~~e~~~~~~~~~L~~~~g~~  395 (475)
T 3lov_A          328 TGFVVNRRAPYSITACTAIDQKWNHSA-PDHTVLRAFVGRPGNDHLV-------HESDEVLQQAVLQDLEKICGRT  395 (475)
T ss_dssp             SEEEECTTSSCSEEEEEEHHHHCTTTC-TTEEEEEEEECBTTBCGGG-------GSCHHHHHHHHHHHHHHHHSSC
T ss_pred             EEEEecCCCCCceEEEEEEcccCCCCC-CCcEEEEEEeCCCCCCccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence                 000           00   111 112222  22334445554       6788999999999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.50  E-value=7.9e-05  Score=61.26  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=79.5

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCCC-cc--
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLP-LG--   77 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl~-~~--   77 (143)
                      |++++++|.+. .+|+. -.+|.||+|+|      ..++.+|+..   +.+.+.+..+.+.+|+.+++.|+++.- .+  
T Consensus       259 i~~~~~~~~v~~~~g~~-~~ad~vi~a~p------~~~~~~l~~~---~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~  328 (470)
T 3i6d_A          259 LSHSGSCYSLELDNGVT-LDADSVIVTAP------HKAAAGMLSE---LPAISHLKNMHSTSVANVALGFPEGSVQMEHE  328 (470)
T ss_dssp             EEECSSSEEEEESSSCE-EEESEEEECSC------HHHHHHHTTT---STTHHHHHTCEEEEEEEEEEEESSTTCCCSSC
T ss_pred             EEEcCCeEEEEECCCCE-EECCEEEECCC------HHHHHHHcCC---chhhHHHhcCCCCceEEEEEEECchhcCCCCC
Confidence            45667789997 66643 45899999999      6699999864   245677888999999999999998632 11  


Q ss_pred             -----ccCC-----------C---CCC--CCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           78 -----TKLL-----------S---SQS--DAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        78 -----~~~~-----------~---sgr--~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                           ....           +   ..+  ++...+++.....|++.+.       +.+.+++.+.+++.+++++|..
T Consensus       329 ~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~g~~  398 (470)
T 3i6d_A          329 GTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIV-------DLSDNDIINIVLEDLKKVMNIN  398 (470)
T ss_dssp             SSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGG-------TSCHHHHHHHHHHHHGGGSCCC
T ss_pred             CeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCcccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence                 0000           0   011  1222344444556666555       6788999999999999988864

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.25  E-value=0.00038  Score=57.93  Aligned_cols=117  Identities=14%  Similarity=0.124  Sum_probs=80.2

Q ss_pred             CcccCCceEEec----CCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580            2 LEPFNGMWHLSL----NGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PL   76 (143)
Q Consensus         2 l~~~~~~W~L~~----~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~   76 (143)
                      |.+++++|.+..    +|+ .-.+|.||+|+|      +.++.+|+... .+...+.+..+++.+|+.+++.|+++. +.
T Consensus       261 i~~~~~~~~v~~~~~~~g~-~~~ad~vV~a~~------~~~~~~ll~~l-~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~  332 (478)
T 2ivd_A          261 LAREDGGWRLIIEEHGRRA-ELSVAQVVLAAP------AHATAKLLRPL-DDALAALVAGIAYAPIAVVHLGFDAGTLPA  332 (478)
T ss_dssp             EECC--CCEEEEEETTEEE-EEECSEEEECSC------HHHHHHHHTTT-CHHHHHHHHTCCBCCEEEEEEEECTTSSCC
T ss_pred             EEecCCeEEEEEeecCCCc-eEEcCEEEECCC------HHHHHHHhhcc-CHHHHHHHhcCCCCcEEEEEEEEccccCCC
Confidence            345566788862    443 345899999999      66899999642 446677788889999999999999863 32


Q ss_pred             c------cc------C-----CCC---CC--CCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           77 G------TK------L-----LSS---QS--DAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        77 ~------~~------~-----~~s---gr--~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                      +      ..      .     .++   ++  ++...++++.+..++....       +.+.+++.+.+++.++++++..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~  404 (478)
T 2ivd_A          333 PDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLV-------EQDEDALAALAREELKALAGVT  404 (478)
T ss_dssp             CCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGG-------GSCHHHHHHHHHHHHHHHHCCC
T ss_pred             CCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCcccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence            0      00      0     010   11  2334677888777766554       5678999999999999988753

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=95.74  E-value=0.0096  Score=49.00  Aligned_cols=117  Identities=14%  Similarity=0.064  Sum_probs=76.3

Q ss_pred             CcccCCc-eEEecCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCCh-HHHHHHhhcccchhhhhHhhhccCC-C---
Q 037580            2 LEPFNGM-WHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLP-QIARQMKRLELSSIWALLAAFEDLL-P---   75 (143)
Q Consensus         2 l~~~~~~-W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p-~la~~~~~~~~~pCWalMlaf~~pl-~---   75 (143)
                      |.+++++ |.+..+|+.+ .+|.||+|+|      ..++.+|+.....| ...+.+.++.+.++..+++.|+++. +   
T Consensus       238 i~~~~~~~v~v~~~~~~~-~ad~VI~a~p------~~~~~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~  310 (453)
T 2yg5_A          238 VKWNESGATVLADGDIRV-EASRVILAVP------PNLYSRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDG  310 (453)
T ss_dssp             EEEETTEEEEEETTTEEE-EEEEEEECSC------GGGGGGSEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGGGT
T ss_pred             EEEeCCceEEEEECCeEE-EcCEEEEcCC------HHHHhcCEeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCCCCC
Confidence            3445666 8887544333 4799999999      44777776311133 4556778888889999999998863 1   


Q ss_pred             cc------c-cC----CCCCCCC-CceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           76 LG------T-KL----LSSQSDA-PHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        76 ~~------~-~~----~~sgr~~-~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                      ..      . .+    +++..++ ...++.+...++++...       +.+.+++.+.+++.+++.+|.
T Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~l~~L~~~~~~  372 (453)
T 2yg5_A          311 LSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMF-------ELSAEERKATILASLARYLGP  372 (453)
T ss_dssp             EEEEEECTTSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHH-------HSCHHHHHHHHHHHHHHHHCG
T ss_pred             CCceeecCCCCeEEEEeCCCCCCCCCEEEEEeccHHHHHHh-------cCCHHHHHHHHHHHHHHHhCc
Confidence            10      0 01    2221111 23677777777776654       457788999999999988764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=95.20  E-value=0.016  Score=49.33  Aligned_cols=116  Identities=12%  Similarity=0.047  Sum_probs=72.8

Q ss_pred             CcccCCceEEecCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcC---CChHHHHHHhhcccchhhhhHhhhccCCCc--
Q 037580            2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSS---GLPQIARQMKRLELSSIWALLAAFEDLLPL--   76 (143)
Q Consensus         2 l~~~~~~W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~---~~p~la~~~~~~~~~pCWalMlaf~~pl~~--   76 (143)
                      |.+++++|.+ .+|+ .-.||.||+|+|      ..++.+|+...   ..+.+.+.+..+.+.++..+.++|+.+...  
T Consensus       242 I~~~~~~v~~-~~G~-~~~ad~VI~a~p------~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~  313 (484)
T 4dsg_A          242 IDADAKTITF-SNGE-VVSYDYLISTVP------FDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHL  313 (484)
T ss_dssp             EETTTTEEEE-TTSC-EEECSEEEECSC------HHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGG
T ss_pred             EEecCCEEEE-CCCC-EEECCEEEECCC------HHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccC
Confidence            3455667766 3443 234899999999      66999999641   145778888999999999999999986321  


Q ss_pred             -c-------c-----cC----CC-C-CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           77 -G-------T-----KL----LS-S-QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        77 -~-------~-----~~----~~-s-gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                       +       .     .+    ++ + .+.....|++...-.++ ...       +.+.|++.+..++.+.++.++.
T Consensus       314 ~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~-~~~-------~~~d~~l~~~a~~~L~~~~~~~  381 (484)
T 4dsg_A          314 KTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES-KYK-------PVNHSTLIEDCIVGCLASNLLL  381 (484)
T ss_dssp             TTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB-TTB-------CCCTTSHHHHHHHHHHHTTSCC
T ss_pred             CCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC-cCC-------cCCHHHHHHHHHHHHHHcCCCC
Confidence             1       0     00    11 1 22222367665432222 122       3355678888888888775554

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=94.22  E-value=0.16  Score=41.01  Aligned_cols=113  Identities=13%  Similarity=0.003  Sum_probs=68.2

Q ss_pred             CcccCCceE-EecCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCC----ChHHHHHHhhcccchhhhhHhhhccCCCc
Q 037580            2 LEPFNGMWH-LSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSG----LPQIARQMKRLELSSIWALLAAFEDLLPL   76 (143)
Q Consensus         2 l~~~~~~W~-L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~----~p~la~~~~~~~~~pCWalMlaf~~pl~~   76 (143)
                      |.+++++|. +..+|+.. .+|.||+|+|      +..+.+||....    .+.+.+.+.+++..+...+.++|++++..
T Consensus       222 i~~~~~~~~gv~~~g~~~-~ad~VV~a~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~  294 (425)
T 3ka7_A          222 ILIENGKAAGIIADDRIH-DADLVISNLG------HAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVG  294 (425)
T ss_dssp             EEEETTEEEEEEETTEEE-ECSEEEECSC------HHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSC
T ss_pred             EEEECCEEEEEEECCEEE-ECCEEEECCC------HHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccC
Confidence            345566776 55445433 4699999999      668889996321    23566677778788888888999887432


Q ss_pred             c---------cc---------CCCC-CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhC
Q 037580           77 G---------TK---------LLSS-QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALG  131 (143)
Q Consensus        77 ~---------~~---------~~~s-gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g  131 (143)
                      .         ..         .+++ -..+.....+|....|.  +.       + ..++..+.+++.+++.++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~--~~-------~-~~~~~~~~~~~~l~~~~p  358 (425)
T 3ka7_A          295 HTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPE--NV-------K-NLESEIEMGLEDLKEIFP  358 (425)
T ss_dssp             SSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGG--GG-------G-GHHHHHHHHHHHHHHHST
T ss_pred             cCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccc--cc-------c-chHHHHHHHHHHHHHhCC
Confidence            1         00         0111 12233444445544442  22       2 234556888999998874

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=93.64  E-value=0.21  Score=42.12  Aligned_cols=117  Identities=14%  Similarity=0.097  Sum_probs=70.0

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCCh-HHHHHHhhcccchhhhhHhhhccCC-C-cc
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLP-QIARQMKRLELSSIWALLAAFEDLL-P-LG   77 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p-~la~~~~~~~~~pCWalMlaf~~pl-~-~~   77 (143)
                      |++++++|.+. .+|+.+ .+|.||+|+|      ..++.+|+..-..| ...+.+.++.+.++-.+.+.|+++. + .+
T Consensus       238 i~~~~~~v~v~~~~g~~~-~ad~VI~a~p------~~~l~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~  310 (520)
T 1s3e_A          238 IDQTRENVLVETLNHEMY-EAKYVISAIP------PTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKD  310 (520)
T ss_dssp             EECSSSSEEEEETTSCEE-EESEEEECSC------GGGGGGSEEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGGGT
T ss_pred             EEECCCeEEEEECCCeEE-EeCEEEECCC------HHHHcceeeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcccCCC
Confidence            44566789887 666443 5799999999      55777776311123 4456667778888877888888763 1 00


Q ss_pred             ----c-------cC----CCCCCCC-CceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           78 ----T-------KL----LSSQSDA-PHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        78 ----~-------~~----~~sgr~~-~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                          .       .+    +++..++ ....+.......++...       +.+.+++.+.+++.+++++|.
T Consensus       311 ~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~-------~~~~~e~~~~vl~~L~~~~~~  374 (520)
T 1s3e_A          311 YCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA-------RLTKEERLKKLCELYAKVLGS  374 (520)
T ss_dssp             EEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHT-------TSCHHHHHHHHHHHHHHHHTC
T ss_pred             CCceeeccCCCCceEEEeeCCCCCCCCCEEEEEccchhhhhhh-------cCCHHHHHHHHHHHHHHHhCc
Confidence                0       01    1221111 12333333333334333       456788999999999988774

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=91.15  E-value=0.97  Score=37.51  Aligned_cols=117  Identities=9%  Similarity=0.045  Sum_probs=68.7

Q ss_pred             CcccCCceEEe-cCCCCc---CCCcEEEEccCCCCCCChhHHHHhh-CcCCChHHHHHHhhcccchhhhhHhhhccCC-C
Q 037580            2 LEPFNGMWHLS-LNGKPR---GQFDVVIVAHNVPSCNDRKCANQLL-GSSGLPQIARQMKRLELSSIWALLAAFEDLL-P   75 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~---g~FD~VVva~P~p~~~~~~qA~~Ll-~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~   75 (143)
                      |.+++++|.+. .+|+..   -.+|.||+|+|      ......++ .....+...+.+..+.+.+.-.+.+.|+++. .
T Consensus       264 I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p------~~~~~~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~  337 (498)
T 2iid_A          264 IQQNDQKVTVVYETLSKETPSVTADYVIVCTT------SRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWE  337 (498)
T ss_dssp             EEECSSCEEEEEECSSSCCCEEEESEEEECSC------HHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGG
T ss_pred             EEECCCeEEEEEecCCcccceEEeCEEEECCC------hHHHhheecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCCcc
Confidence            45567789886 555432   25899999999      55666653 2211335567778888888888899998762 1


Q ss_pred             c-----c-----cc-C---CCC-C-CCCCceEEEEe--CchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580           76 L-----G-----TK-L---LSS-Q-SDAPHCWTSST--LQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP  133 (143)
Q Consensus        76 ~-----~-----~~-~---~~s-g-r~~~e~WvlhA--t~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~  133 (143)
                      .     .     .. +   .++ . .++  .-+|.+  ..+.++.-.       ..+.+++.+.+++.+++++|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~s~~~p~g--~~~L~~~~~g~~a~~~~-------~~~~~~~~~~~l~~L~~~~g~~  404 (498)
T 2iid_A          338 DDGIHGGKSTTDLPSRFIYYPNHNFTNG--VGVIIAYGIGDDANFFQ-------ALDFKDCADIVFNDLSLIHQLP  404 (498)
T ss_dssp             GGTCCSSEEEESSTTCEEECCSSCCTTS--CEEEEEEEEHHHHHTTT-------TSCHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCccCCcccCCCCcceEEECCCCCCCC--CcEEEEEeCCccHhhhh-------cCCHHHHHHHHHHHHHHHcCCC
Confidence            0     0     00 0   111 1 111  233433  222222211       3467788889999998888753

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=90.52  E-value=0.055  Score=45.05  Aligned_cols=116  Identities=9%  Similarity=0.003  Sum_probs=72.6

Q ss_pred             CcccCCceEEe-cCCC--CcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC----
Q 037580            2 LEPFNGMWHLS-LNGK--PRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL----   74 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~--~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl----   74 (143)
                      |++.+++|.+. .+|.  ..-.||.||+|+|      ..+...|+.. ..+...+.+.++.+.++..+.+.|+++.    
T Consensus       263 i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p------~~~l~~l~~~-l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~  335 (489)
T 2jae_A          263 MKNVSEGVTVEYTAGGSKKSITADYAICTIP------PHLVGRLQNN-LPGDVLTALKAAKPSSSGKLGIEYSRRWWETE  335 (489)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEESEEEECSC------HHHHTTSEEC-CCHHHHHHHHTEECCCEEEEEEEESSCHHHHT
T ss_pred             EEEcCCeEEEEEecCCeEEEEECCEEEECCC------HHHHHhCccC-CCHHHHHHHHhCCCccceEEEEEeCCCCccCC
Confidence            45667789886 4442  2345899999999      5577777642 1346677888889999999999998752    


Q ss_pred             -Cc-c------ccC----CCC-CCCCCceEEEE---eCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           75 -PL-G------TKL----LSS-QSDAPHCWTSS---TLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        75 -~~-~------~~~----~~s-gr~~~e~Wvlh---At~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                       .. +      ...    .+| .-.... .++.   ....+.+...       +.+.+++.+.+++.++++++.
T Consensus       336 ~~~~g~~~~~~~~~~~~~~~s~~~~~~~-~~l~~~~~~g~~~~~~~-------~~~~~~~~~~~l~~L~~~~~~  401 (489)
T 2jae_A          336 DRIYGGASNTDKDISQIMFPYDHYNSDR-GVVVAYYSSGKRQEAFE-------SLTHRQRLAKAIAEGSEIHGE  401 (489)
T ss_dssp             TCCCSCEEEESSTTCEEECCSSSTTSSC-EEEEEEEEETHHHHHHH-------TSCHHHHHHHHHHHHHHHHCG
T ss_pred             CCcccccccCCCCceEEEeCCCCCCCCC-CEEEEEeeCCchhhhhh-------cCCHHHHHHHHHHHHHHHcCc
Confidence             11 0      011    122 111112 2332   2344554443       346788999999999988864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=90.22  E-value=0.16  Score=41.43  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=46.8

Q ss_pred             CcccCCceEEecCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCC-hHHHHHHhhcccchhhhhHhhhccC
Q 037580            2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGL-PQIARQMKRLELSSIWALLAAFEDL   73 (143)
Q Consensus         2 l~~~~~~W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~-p~la~~~~~~~~~pCWalMlaf~~p   73 (143)
                      |.+++++| +..+|+. -.+|.||+|++      ...+.+||+.... +.+.+.+.+++..++..+.++|+.+
T Consensus       215 i~~~~~~v-V~~~g~~-~~ad~Vv~a~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~  279 (421)
T 3nrn_A          215 INIEEKKV-YTRDNEE-YSFDVAISNVG------VRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGE  279 (421)
T ss_dssp             EETTTTEE-EETTCCE-EECSEEEECSC------HHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESS
T ss_pred             EEEECCEE-EEeCCcE-EEeCEEEECCC------HHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCC
Confidence            44566788 7655533 34799999999      6689999972112 3566777888888999999999886

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=84.10  E-value=3.5  Score=37.52  Aligned_cols=117  Identities=8%  Similarity=-0.041  Sum_probs=67.9

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHh---hCcCCChHHHHHHhhcccchhhhhHhhhccCC-C-
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQL---LGSSGLPQIARQMKRLELSSIWALLAAFEDLL-P-   75 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~L---l~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~-   75 (143)
                      |++++++|.+. .+|+. -.+|.||+|+|      .......   +.....+...+.+..+.+.+.--+.+.|++|. . 
T Consensus       555 I~~~~~~v~V~~~~G~~-i~Ad~VIvA~P------~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~  627 (776)
T 4gut_A          555 IDYSGDEVQVTTTDGTG-YSAQKVLVTVP------LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDS  627 (776)
T ss_dssp             EECSSSSEEEEETTCCE-EEESEEEECCC------HHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHH
T ss_pred             EEEcCCEEEEEECCCcE-EEcCEEEECCC------HHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccc
Confidence            45667789987 66643 34799999999      4455431   11111234556777777777778888898762 1 


Q ss_pred             ----cc----ccC------------CCCCCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580           76 ----LG----TKL------------LSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL  132 (143)
Q Consensus        76 ----~~----~~~------------~~sgr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~  132 (143)
                          ..    ...            +.+...+.-..+.....+.++.-.       +.+.+++.+..++.|.+++|.
T Consensus       628 ~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~-------~lsdeel~~~~l~~L~~ifg~  697 (776)
T 4gut_A          628 KVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVR-------TLDDKQVLQQCMATLRELFKE  697 (776)
T ss_dssp             HHTTCSEEEECCSSGGGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHH-------TSCHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCceEEeecCCcCCCceEEEEecCCCCCCceEEEEEecchhHHHHH-------cCCHHHHHHHHHHHHHHHhCc
Confidence                00    000            111000111222233344444432       457789999999999999885

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=83.90  E-value=0.43  Score=39.63  Aligned_cols=116  Identities=11%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhC---cCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLG---SSGLPQIARQMKRLELSSIWALLAAFEDLL-PL   76 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~---~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~   76 (143)
                      |.+.+++|.+. .+|+.+ .+|.||+|+|      ..++..++.   ....+...+.+..+.+.++--+.+.|++|. +.
T Consensus       240 i~~~~~~v~v~~~~g~~~-~ad~vI~a~~------~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~  312 (472)
T 1b37_A          240 IKYSPGGVTVKTEDNSVY-SADYVMVSAS------LGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPE  312 (472)
T ss_dssp             EEECSSCEEEEETTSCEE-EESEEEECSC------HHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCC
T ss_pred             EEEcCCcEEEEECCCCEE-EcCEEEEecC------HHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCC
Confidence            34556778887 666443 4799999999      667777652   111223456677777888888889998863 11


Q ss_pred             --c------c--c---------CCCCCCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHh-CC
Q 037580           77 --G------T--K---------LLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAAL-GL  132 (143)
Q Consensus        77 --~------~--~---------~~~sgr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~-g~  132 (143)
                        .      .  .         .+++ ..+....++....+.++...       +.+.+++.+.+++.+++++ |.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~l~~~~~~~~a~~~~-------~~~~~e~~~~~l~~L~~~~Pg~  380 (472)
T 1b37_A          313 GKGREFFLYASSRRGYYGVWQEFEKQ-YPDANVLLVTVTDEESRRIE-------QQSDEQTKAEIMQVLRKMFPGK  380 (472)
T ss_dssp             STTCSEEEECCSSTTSSCEEEECTTT-STTCCEEEEEEEHHHHHHHH-------TSCHHHHHHHHHHHHHHHCTTS
T ss_pred             CCCcceEEecccCCccceeeecccCC-CCCCCEEEEEechHHHHHHH-------hCCHHHHHHHHHHHHHHHcCCC
Confidence              0      0  0         0000 01222333333333333222       3468899999999999988 64

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=82.25  E-value=0.43  Score=39.63  Aligned_cols=66  Identities=11%  Similarity=-0.011  Sum_probs=45.7

Q ss_pred             CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCCh-HHHHHHhhcccchhhhhHhhhccCC
Q 037580            2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLP-QIARQMKRLELSSIWALLAAFEDLL   74 (143)
Q Consensus         2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p-~la~~~~~~~~~pCWalMlaf~~pl   74 (143)
                      |++.+++|.+. .+|+. -.+|.||+|+|      ..++.+|+-.-..| ...+.+..+.+.++..+.+.|+++.
T Consensus       282 i~~~~~~v~v~~~~g~~-~~ad~vI~a~~------~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~  349 (495)
T 2vvm_A          282 VVNERDAARVTARDGRE-FVAKRVVCTIP------LNVLSTIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKD  349 (495)
T ss_dssp             EEECSSSEEEEETTCCE-EEEEEEEECCC------GGGGGGSEEESCCCHHHHHHHHHCCCCCCEEEEEEESCGG
T ss_pred             EEEcCCEEEEEECCCCE-EEcCEEEECCC------HHHHhheeeCCCCCHHHHHHHHhcCCCceeEEEEEECCcc
Confidence            34556678886 55533 35799999999      44777775211123 4556777788889999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.15

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.15  E-value=0.0083  Score=42.35  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=45.1

Q ss_pred             CcccCCceEEe--cCCC-CcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccC
Q 037580            2 LEPFNGMWHLS--LNGK-PRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDL   73 (143)
Q Consensus         2 l~~~~~~W~L~--~~g~-~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~p   73 (143)
                      |++++++|.+.  .+|+ ..-.||.||+|+|      +.++.+||... .+.++..+..+...+....+..++..
T Consensus       245 I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p------~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (347)
T d2ivda1         245 LAREDGGWRLIIEEHGRRAELSVAQVVLAAP------AHATAKLLRPL-DDALAALVAGIYNLGHLERVAAIDAA  312 (347)
T ss_dssp             EECC--CCEEEEEETTEEEEEECSEEEECSC------HHHHHHHHTTT-CHHHHHHHHTCCBTTHHHHHHHHHHH
T ss_pred             EEEeCCeEEEEEEcCCeEEEEECCEEEECCC------HHHHHHhccCC-CHHHHHHhhcceecCcccceeccccc
Confidence            45667788885  3332 2346899999999      66999999864 77888888887666666555555543