Citrus Sinensis ID: 037620
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9A2 | 510 | Pentatricopeptide repeat- | yes | no | 0.975 | 0.631 | 0.671 | 1e-135 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.981 | 0.626 | 0.409 | 1e-76 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.921 | 0.476 | 0.323 | 2e-44 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.945 | 0.280 | 0.319 | 1e-41 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.981 | 0.425 | 0.287 | 1e-41 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.951 | 0.524 | 0.259 | 3e-40 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.951 | 0.525 | 0.259 | 5e-40 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.951 | 0.524 | 0.259 | 5e-40 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.978 | 0.540 | 0.262 | 6e-40 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.963 | 0.608 | 0.284 | 1e-39 |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 219/326 (67%), Positives = 271/326 (83%), Gaps = 4/326 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M++FG K E DFNR++DTL KSR+V AQ+VFDKMKK+RF+PDIKSYTILLEGWGQ+ N
Sbjct: 188 MEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++EV REMKD+GFEPDVV+YGI+INAHC AK+Y+EA+ F EME NCKPSPHIFC+
Sbjct: 248 LLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCS 307
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEK+L++AL+FF +SK GF EAPTYNA+VGAYCWS R+ DAY+ +DEMR G
Sbjct: 308 LINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKG 367
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GPN RTYDI+LHHLI+ R++EAY V++ MS EPTVSTYEI+VRMFC ++DMA
Sbjct: 368 VGPNARTYDIILHHLIRMQRSKEAYEVYQTMS----CEPTVSTYEIMVRMFCNKERLDMA 423
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++IWDEMK +GVLP MHM+S+LI +LCHE+KLD+AC+YF EMLD+GIRPPG +FS LKQ
Sbjct: 424 IKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQT 483
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG ++ L K+D+LRKT LV
Sbjct: 484 LLDEGRKDKVTDLVVKMDRLRKTQLV 509
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 209/327 (63%), Gaps = 3/327 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+K+ L L FN L+ LCKS++V +AQEVF+ M+ R F PD K+Y+ILLEGWG++ N
Sbjct: 194 MEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILLEGWGKEPN 252
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L EV+REM D G PD+V+Y IM++ C A R DEA+ + R M+ + CKP+ I+
Sbjct: 253 LPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSV 312
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L++ G+E RL EA+ F + ++ G + + +N+++GA+C + R+ + YR++ EM+ G
Sbjct: 313 LVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKG 372
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN+++ +I+L HLI+ G +EA+ VF++M + EP TY +V++MFC +++ A
Sbjct: 373 VTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK--VCEPDADTYTMVIKMFCEKKEMETA 430
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++W M+ +GV P MH +S LIN LC E AC +EM+++GIRP G F L+Q
Sbjct: 431 DKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQL 490
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLVD 327
L E E+ L +K++ L PL D
Sbjct: 491 LIKEEREDVLKFLNEKMNVLVNEPLCD 517
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 180/312 (57%), Gaps = 8/312 (2%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+GL+ + F L+D LCK+ V+ A +VF+ M+++ F P+++ +T LL GW ++
Sbjct: 193 MPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK-FPPNLRYFTSLLYGWCREGK 251
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ EV +MK+ G EPD+V + +++ + A + +A +L +M +P+ + +
Sbjct: 252 LMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTV 311
Query: 121 LINGLG-SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC-WSMRINDAYRMMDEMRK 178
LI L +EKR+ EA++ F + ++ G E + TY A++ +C W M I+ Y ++D+MRK
Sbjct: 312 LIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM-IDKGYSVLDDMRK 370
Query: 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238
G+ P+ TY ++ K + EE + ++M R+ G P + Y +V+R+ C +V
Sbjct: 371 KGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRR-GCHPDLLIYNVVIRLACKLGEVK 429
Query: 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP---GQLFS 295
A+R+W+EM+A G+ P + + +IN + L +AC +F+EM+ GI G L S
Sbjct: 430 EAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKS 489
Query: 296 NLKQALRDEGME 307
L +RD+ +E
Sbjct: 490 LLNNLVRDDKLE 501
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 1/313 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD G ++ + LID LC +R ++ A+EVF+KMK R PD +Y LL+ + ++
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD 343
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L S+ + + EM+ DG PDVV++ I+++A C A + EA + M P+ H + T
Sbjct: 344 LDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI GL RL +AL+ FG + G +P A TY + Y S A ++M+ G
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN + L+ L KAGR EA +F + + G P TY ++++ + ++D A
Sbjct: 464 IAPNIVACNASLYSLAKAGRDREAKQIFYGL-KDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++ EM G P + + ++LIN+L D++D+A K F M ++ ++P ++ L
Sbjct: 523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAG 582
Query: 301 LRDEGMEETAVVL 313
L G + A+ L
Sbjct: 583 LGKNGKIQEAIEL 595
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Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 170/341 (49%), Gaps = 17/341 (4%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + + +N +ID +CK VE A+ +F++MK R PD +Y +++G+G+ L
Sbjct: 257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 316
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ EMKD EPDV++Y +IN C + +E +REM+ KP+ + TL++
Sbjct: 317 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E + +A++F+ ++ G P TY +++ A C ++DA+R+ +EM + G+ N
Sbjct: 377 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 436
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY ++ L A R +EA +F +M G P +++Y ++ F +D A+ +
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMD-TAGVIPNLASYNALIHGFVKAKNMDRALELL 495
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
+E+K RG+ P + +Y T I LC +K++ A EM + GI+ +++ L A
Sbjct: 496 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555
Query: 305 G----------------MEETAVVLAQKIDKLRKTPLVDRG 329
G +E T V ID L K LV +
Sbjct: 556 GNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKA 596
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 170/316 (53%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 313
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ +++ +A++LF M++ P+ +
Sbjct: 314 LIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E A ++ +M + EP++ T+ ++++ + +M
Sbjct: 434 HPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE-IEPSIHTFNMIMKSYFMARNYEMG 492
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+W+EM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 493 RAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 552
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 553 FHRGGQPEIFEELAQR 568
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 168/316 (53%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 254 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 312
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ + + +A++LF M++ P+ +
Sbjct: 313 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 372
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 373 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 432
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E ++ +M + EP++ T+ ++++ + +M
Sbjct: 433 HPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYFVARNYEMG 491
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+WDEM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 492 RAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 551
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 552 FHRGGQPEIFEELAQR 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 168/316 (53%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 313
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ + + +A++LF M++ P+ +
Sbjct: 314 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E ++ +M + EP++ T+ ++++ + +M
Sbjct: 434 HPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYFVARNYEMG 492
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+WDEM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 493 RAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 552
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 553 FHRGGQPEIFEELAQR 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 168/324 (51%), Gaps = 1/324 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
+D+ + ++ +N ++ +LC S +++A EV D+M +R PD+ +YTIL+E +
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ EM+D G PDVV+Y +++N C R DEA++ +M ++ C+P+
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++ + S R +A + ++GF P T+N ++ C + A ++++M + G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN+ +Y+ +LH K + + A +RM + G P + TY ++ C + +V+ A
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR-GCYPDIVTYNTMLTALCKDGKVEDA 433
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ I +++ ++G PV+ Y+T+I+ L K A K EM ++P +S+L
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGG 493
Query: 301 LRDEGMEETAVVLAQKIDKLRKTP 324
L EG + A+ + +++ P
Sbjct: 494 LSREGKVDEAIKFFHEFERMGIRP 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 2/320 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M +FG+K + D ++L+ +LC +HV AQE F K K P K+Y+IL+ GW + ++
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+V+ EM + D+++Y +++A C + D ++F+EM KP + F
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
I+ + A + + K+ P T+N ++ C + +++DAY ++DEM + G
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+T TY+ ++ + A + RM R P TY +V+++ + D A
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCL-PDRHTYNMVLKLLIRIGRFDRA 402
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHED-KLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
IW+ M R P + Y+ +I+ L + KL++AC+YF+ M+D GI P L+
Sbjct: 403 TEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRN 462
Query: 300 ALRDEGMEETAVVLAQKIDK 319
L G + VLA K+++
Sbjct: 463 RLVGWGQMDVVDVLAGKMER 482
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| 225424178 | 531 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.608 | 0.736 | 1e-149 | |
| 449465535 | 542 | PREDICTED: pentatricopeptide repeat-cont | 0.866 | 0.527 | 0.730 | 1e-149 | |
| 449503427 | 542 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.866 | 0.527 | 0.730 | 1e-149 | |
| 255580475 | 533 | pentatricopeptide repeat-containing prot | 0.872 | 0.540 | 0.733 | 1e-146 | |
| 224111544 | 424 | predicted protein [Populus trichocarpa] | 0.984 | 0.766 | 0.730 | 1e-144 | |
| 227463004 | 547 | pentatricopeptide repeat protein [Gossyp | 0.772 | 0.466 | 0.717 | 1e-143 | |
| 356534319 | 507 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.642 | 0.672 | 1e-134 | |
| 297841875 | 512 | pentatricopeptide repeat-containing prot | 0.975 | 0.628 | 0.680 | 1e-134 | |
| 15223927 | 510 | pentatricopeptide repeat-containing prot | 0.975 | 0.631 | 0.671 | 1e-133 | |
| 357444525 | 507 | Pentatricopeptide repeat-containing prot | 0.987 | 0.642 | 0.642 | 1e-131 |
| >gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 240/326 (73%), Positives = 287/326 (88%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+KFGL+ L DFNRL+D LCKSRHVERAQEVFDKMK R+F PDIKSYTILLEGWGQ++N
Sbjct: 205 MEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQN 264
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++EVYREMKD+GFEPD V+YGI+INAHC A+RYD AVELF +MEA C P+PHI+CT
Sbjct: 265 LLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCT 324
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSE+RL+EALQFF +SK GF PEAPTYNAVVG+YC SMR++DAYR++DEMRKCG
Sbjct: 325 LINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCG 384
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GP TRTYDI+LHHLIKA RT+EAY VF+ MS +PG EP+VSTYEIVVRMFC +VDMA
Sbjct: 385 VGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMA 444
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+R+WDEMKA+GVLP MHM+STLINSLC+E+KLD+ACKYF EMLD+GIRPP +FSNLKQ
Sbjct: 445 LRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQT 504
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG ++ ++LAQK+DK+R T ++
Sbjct: 505 LLDEGKQDMVLILAQKLDKIRTTQVI 530
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 238/326 (73%), Positives = 288/326 (88%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+KFG + + DFNRL+DTLCKSR+V++AQEVFDKMK RF PDIKSYTILLEGWGQ +N
Sbjct: 216 MEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQN 275
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL +NEVYREM+D+GFEPDVV++GI+INAHC A++YDEA+ LF EMEA N KPSPH+FCT
Sbjct: 276 LLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCT 335
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEKRL EAL+FF Q K GF PEAPTYNAVVGAYCWSM++ AYRM+DEMRK G
Sbjct: 336 LINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSG 395
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GPN+RTYDI+LHHLIK +++EAYSVF+RMSR+PG EPT+STY+I++RMFC +VDMA
Sbjct: 396 VGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMA 455
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++IWDEMKA+GVLP MH++STLINSLCHE KL+DAC YFQEMLD+GIRPP +FSNLKQA
Sbjct: 456 IQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQA 515
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L D+G ++TA+++A+KI KLRK PLV
Sbjct: 516 LLDDGRKDTALLMAEKIKKLRKAPLV 541
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g71060, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 238/326 (73%), Positives = 288/326 (88%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+KFG + + DFNRL+DTLCKSR+V++AQEVFDKMK RF PDIKSYTILLEGWGQ +N
Sbjct: 216 MEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQN 275
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL +NEVYREM+D+GFEPDVV++GI+INAHC A++YDEA+ LF EMEA N KPSPH+FCT
Sbjct: 276 LLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCT 335
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEKRL EAL+FF Q K GF PEAPTYNAVVGAYCWSM++ AYRM+DEMRK G
Sbjct: 336 LINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSG 395
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GPN+RTYDI+LHHLIK +++EAYSVF+RMSR+PG EPT+STY+I++RMFC +VDMA
Sbjct: 396 VGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMA 455
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++IWDEMKA+GVLP MH++STLINSLCHE KL+DAC YFQEMLD+GIRPP +FSNLKQA
Sbjct: 456 IQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQA 515
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L D+G ++TA+++A+KI KLRK PLV
Sbjct: 516 LLDDGRKDTALLMAEKIXKLRKAPLV 541
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/326 (73%), Positives = 284/326 (87%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+KFGLK E DFNRL+DTL KSR V AQ VFDKMK RRF PDIKSYTILLEGWGQ+KN
Sbjct: 207 MEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKN 266
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++EVYREMKD+GFEPDVV+YGI+INA+C ++YD+A+ELFREME+ NC+PSPHIFCT
Sbjct: 267 LLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCT 326
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGS +RLSEAL+FF +SK GF PE PTYNAVVGAYCWSMRI+DAYRM+DEMRK G
Sbjct: 327 LINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSG 386
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GPN+RTYDI+LHHLIKA +T EA+SVF++MS + EPTVSTY+I+VRMFC +V+ A
Sbjct: 387 VGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESA 446
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++WD MKA+GV P MHM+S LINSLCHE+KLD ACKYFQEMLD+GIRPP LFS+LKQA
Sbjct: 447 IKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQA 506
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L ++G ++T V+LAQKIDKLRKTP V
Sbjct: 507 LIEDGRKDTVVLLAQKIDKLRKTPYV 532
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa] gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 238/326 (73%), Positives = 281/326 (86%), Gaps = 1/326 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+KFGLK E D NRL+DTLCKSR VERAQ VFDKM KR F DIKSYTILLEGWGQ+KN
Sbjct: 99 MEKFGLKIESSDVNRLLDTLCKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKN 158
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L + EVY EMKD+GFEPDVV+YGI+INAHC ++RYD+A+ELF EMEA NCKPSPHI+CT
Sbjct: 159 LSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCT 218
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLG+EKRLSEAL+FF SK GF PEAPTYNAVVGAYCWS R++D R +DEMRK G
Sbjct: 219 LINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGG 278
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GP+ RTYDI+LHHLI+AG+T+ AYSVF++MS + G +P+VSTYEI+VRMFC +VDMA
Sbjct: 279 VGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCE-GCQPSVSTYEIIVRMFCNEDRVDMA 337
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++WD+MKA+G+LPVMHM+STLINSLCHE KLD+AC YFQEMLD+GIRPP QLFSNLKQ
Sbjct: 338 IKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQN 397
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG ++T VV +K+DKLRK PLV
Sbjct: 398 LLDEGKKDTVVVFERKLDKLRKAPLV 423
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum] gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 234/326 (71%), Positives = 282/326 (86%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M++FG K E DFNRL+DTLCKSRHVE+A +VFDKMKKRRF PDIKSYTILLEGWG++ N
Sbjct: 217 MEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHN 276
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++EVY EMK DGFEPDVV+YGI+I+A+C AK+YD A+ELF EMEA NCKP+PH++CT
Sbjct: 277 LLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCT 336
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEKRLSEAL+FF + K GF PEAPTYN++VGAYCWSMRI+DA++++DEMRK
Sbjct: 337 LINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHS 396
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
GPN+RTYDI+LHHLIKA RT EAY F++MS +PG EPTVSTYEI+VRMFC +VD+A
Sbjct: 397 AGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLA 456
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++WD+MKA+GVLP MHMYS LI SLCH++KL +ACKYFQEMLD GIRPP ++FSNLKQA
Sbjct: 457 KQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQA 516
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG + A+ LA+KI+KLR TPLV
Sbjct: 517 LLDEGKNDEALNLARKINKLRGTPLV 542
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 271/327 (82%), Gaps = 1/327 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ +GLK + DFN+L+D LCKS+ VE A EVFDKM+K R DPDIKSYTILLEGW QQ+N
Sbjct: 180 MEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMRKLRLDPDIKSYTILLEGWSQQQN 239
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ +NEV REM+D GF+ DVV+YGI++NAHC AK++DEA+ L+ EM+A +PSPH++CT
Sbjct: 240 LIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCT 299
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGS+KRL EAL+FF SK GF PEAPTYNAVVGAYCWS+R++DAYRM+ EM+KCG
Sbjct: 300 LINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCG 359
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP-GTEPTVSTYEIVVRMFCYNAQVDM 239
IGPN+RT+DIVLHHLIK R EEA SVF+RM+ G EP+VSTYEI+VRMFC +DM
Sbjct: 360 IGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTYEIMVRMFCNEELLDM 419
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
A+ +WDEMK +G+LP MHM+STL+ +LCHE KLD+ACKYFQEMLD+GIRPP ++FS LK+
Sbjct: 420 AVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKE 479
Query: 300 ALRDEGMEETAVVLAQKIDKLRKTPLV 326
AL D GME A+ KIDKLRK+PLV
Sbjct: 480 ALVDAGMEHVAMHFTLKIDKLRKSPLV 506
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 271/326 (83%), Gaps = 4/326 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ +G K E DFNR++D L KSR+V AQ+VFDKMKK+RF+PDIKSYTILLEGWGQ+ N
Sbjct: 190 MEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN 249
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL +NEVY EMKD+GFEPDVV+YGI+INA+C AK+YDEAV F EME NCKPSPHIFC+
Sbjct: 250 LLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCS 309
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEK+L++AL+FF +SK GF EAPTYNA+VGAYCWS R+ DA++ +DEMR G
Sbjct: 310 LINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRSKG 369
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
IGPN RTYDI+LHHLI+ RT+EAY V+++MS EPTVSTYEI+VRMFC ++DMA
Sbjct: 370 IGPNARTYDIILHHLIRMQRTKEAYEVYQKMS----CEPTVSTYEIMVRMFCNKERLDMA 425
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++IWDEMK +GVLP MHM+S+LI +LCHE+KLD+AC+YF EMLD+GIRPPG LFS LKQ
Sbjct: 426 IKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLKQT 485
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG ++ LA K+D+LRKT LV
Sbjct: 486 LLDEGRKDKVADLAVKMDRLRKTQLV 511
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; Flags: Precursor gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana] gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/326 (67%), Positives = 271/326 (83%), Gaps = 4/326 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M++FG K E DFNR++DTL KSR+V AQ+VFDKMKK+RF+PDIKSYTILLEGWGQ+ N
Sbjct: 188 MEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++EV REMKD+GFEPDVV+YGI+INAHC AK+Y+EA+ F EME NCKPSPHIFC+
Sbjct: 248 LLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCS 307
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEK+L++AL+FF +SK GF EAPTYNA+VGAYCWS R+ DAY+ +DEMR G
Sbjct: 308 LINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKG 367
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GPN RTYDI+LHHLI+ R++EAY V++ MS EPTVSTYEI+VRMFC ++DMA
Sbjct: 368 VGPNARTYDIILHHLIRMQRSKEAYEVYQTMS----CEPTVSTYEIMVRMFCNKERLDMA 423
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++IWDEMK +GVLP MHM+S+LI +LCHE+KLD+AC+YF EMLD+GIRPPG +FS LKQ
Sbjct: 424 IKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQT 483
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG ++ L K+D+LRKT LV
Sbjct: 484 LLDEGRKDKVTDLVVKMDRLRKTQLV 509
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 210/327 (64%), Positives = 270/327 (82%), Gaps = 1/327 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSR-HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK 59
M+K+GLK ++ DFN+LID LCKS+ HVE+AQE+FDKM++ +P++KSYTIL+EGW QQ+
Sbjct: 180 MEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQ 239
Query: 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
NLL ++EV REMKDDGF+PDVV+YGI+INA+C AK+YDEA+ ++ +M + N PSPHI+C
Sbjct: 240 NLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYC 299
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
T I GLG+ R+ EA +FF +SK GF PEAPTYNAVV AYCWSMRI+DAYR++ EM++
Sbjct: 300 TFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKEL 359
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
GIGPN RTYDI+L HLIK GRT+EAYSVF+RMS + G EP+VSTY I+VRMFC Q+DM
Sbjct: 360 GIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDM 419
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
AM +W+EMK +G+LP +HM+STLI SLCHE+KLDDAC+YFQ+MLD+GIRP +FS K+
Sbjct: 420 AMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKR 479
Query: 300 ALRDEGMEETAVVLAQKIDKLRKTPLV 326
AL GME T + A+K+DKLR TPL+
Sbjct: 480 ALMAAGMENTVIHFAKKVDKLRNTPLI 506
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.975 | 0.631 | 0.671 | 2.4e-122 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.918 | 0.474 | 0.332 | 1.6e-47 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.951 | 0.524 | 0.259 | 6.8e-40 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.951 | 0.525 | 0.259 | 1.4e-39 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.951 | 0.524 | 0.259 | 1.4e-39 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.963 | 0.608 | 0.284 | 2.1e-38 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.945 | 0.280 | 0.319 | 2.3e-38 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.866 | 0.542 | 0.299 | 8.9e-38 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.978 | 0.540 | 0.262 | 9.9e-38 | |
| TAIR|locus:2204913 | 491 | AT1G02420 "AT1G02420" [Arabido | 0.903 | 0.606 | 0.299 | 1.1e-37 |
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 219/326 (67%), Positives = 271/326 (83%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M++FG K E DFNR++DTL KSR+V AQ+VFDKMKK+RF+PDIKSYTILLEGWGQ+ N
Sbjct: 188 MEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++EV REMKD+GFEPDVV+YGI+INAHC AK+Y+EA+ F EME NCKPSPHIFC+
Sbjct: 248 LLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCS 307
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEK+L++AL+FF +SK GF EAPTYNA+VGAYCWS R+ DAY+ +DEMR G
Sbjct: 308 LINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKG 367
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GPN RTYDI+LHHLI+ R++EAY V++ MS EPTVSTYEI+VRMFC ++DMA
Sbjct: 368 VGPNARTYDIILHHLIRMQRSKEAYEVYQTMS----CEPTVSTYEIMVRMFCNKERLDMA 423
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++IWDEMK +GVLP MHM+S+LI +LCHE+KLD+AC+YF EMLD+GIRPPG +FS LKQ
Sbjct: 424 IKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQT 483
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG ++ L K+D+LRKT LV
Sbjct: 484 LLDEGRKDKVTDLVVKMDRLRKTQLV 509
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 104/313 (33%), Positives = 183/313 (58%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+GL+ + F L+D LCK+ V+ A +VF+ M+++ F P+++ +T LL GW ++
Sbjct: 193 MPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK-FPPNLRYFTSLLYGWCREGK 251
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ EV +MK+ G EPD+V + +++ + A + +A +L +M +P+ + +
Sbjct: 252 LMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTV 311
Query: 121 LINGL-GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC-WSMRINDAYRMMDEMRK 178
LI L +EKR+ EA++ F + ++ G E + TY A++ +C W M I+ Y ++D+MRK
Sbjct: 312 LIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM-IDKGYSVLDDMRK 370
Query: 179 CGIGPNTRTY-DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237
G+ P+ TY I++ H K + EE + ++M R+ G P + Y +V+R+ C +V
Sbjct: 371 KGVMPSQVTYMQIMVAHE-KKEQFEECLELIEKMKRR-GCHPDLLIYNVVIRLACKLGEV 428
Query: 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI--RPP-GQLF 294
A+R+W+EM+A G+ P + + +IN + L +AC +F+EM+ GI P G L
Sbjct: 429 KEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLK 488
Query: 295 SNLKQALRDEGME 307
S L +RD+ +E
Sbjct: 489 SLLNNLVRDDKLE 501
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 82/316 (25%), Positives = 170/316 (53%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 313
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ +++ +A++LF M++ P+ +
Sbjct: 314 LIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E A ++ +M + EP++ T+ ++++ + +M
Sbjct: 434 HPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE-IEPSIHTFNMIMKSYFMARNYEMG 492
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+W+EM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 493 RAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 552
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 553 FHRGGQPEIFEELAQR 568
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 82/316 (25%), Positives = 168/316 (53%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 254 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 312
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ + + +A++LF M++ P+ +
Sbjct: 313 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 372
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 373 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 432
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E ++ +M + EP++ T+ ++++ + +M
Sbjct: 433 HPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYFVARNYEMG 491
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+WDEM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 492 RAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 551
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 552 FHRGGQPEIFEELAQR 567
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 82/316 (25%), Positives = 168/316 (53%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 313
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ + + +A++LF M++ P+ +
Sbjct: 314 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E ++ +M + EP++ T+ ++++ + +M
Sbjct: 434 HPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYFVARNYEMG 492
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+WDEM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 493 RAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 552
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 553 FHRGGQPEIFEELAQR 568
|
|
| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 91/320 (28%), Positives = 161/320 (50%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M +FG+K + D ++L+ +LC +HV AQE F K K P K+Y+IL+ GW + ++
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+V+ EM + D+++Y +++A C + D ++F+EM KP + F
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
I+ + A + + K+ P T+N ++ C + +++DAY ++DEM + G
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+T TY+ ++ + A + RM R P TY +V+++ + D A
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCL-PDRHTYNMVLKLLIRIGRFDRA 402
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHED-KLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
IW+ M R P + Y+ +I+ L + KL++AC+YF+ M+D GI P L+
Sbjct: 403 TEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRN 462
Query: 300 ALRDEGMEETAVVLAQKIDK 319
L G + VLA K+++
Sbjct: 463 RLVGWGQMDVVDVLAGKMER 482
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/313 (31%), Positives = 165/313 (52%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD G ++ + LID LC +R ++ A+EVF+KMK R PD +Y LL+ + ++
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD 343
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L S+ + + EM+ DG PDVV++ I+++A C A + EA + M P+ H + T
Sbjct: 344 LDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI GL RL +AL+ FG + G +P A TY + Y S A ++M+ G
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN + L+ L KAGR EA +F + + G P TY ++++ + ++D A
Sbjct: 464 IAPNIVACNASLYSLAKAGRDREAKQIFYGL-KDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++ EM G P + + ++LIN+L D++D+A K F M ++ ++P ++ L
Sbjct: 523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAG 582
Query: 301 LRDEGMEETAVVL 313
L G + A+ L
Sbjct: 583 LGKNGKIQEAIEL 595
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 88/294 (29%), Positives = 156/294 (53%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G+K ++ + +ID+LCK+ HV A +FD+M+ PD+ YT L+ G
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + R M +PDV+++ +I+A ++ +A EL+ EM + P+ + +
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING E + EA Q F + +G P+ Y +++ +C +++DA ++ EM + G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ NT TY ++ + G+ A VF M + G P + TY +++ CYN +V A
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSR-GVPPNIRTYNVLLHCLCYNGKVKKA 406
Query: 241 MRIWDEMKAR---GVLPVMHMYSTLINSLCHEDKLDDACKYFQEM----LDIGI 287
+ I+++M+ R GV P + Y+ L++ LC+ KL+ A F++M +DIGI
Sbjct: 407 LMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGI 460
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 9.9e-38, P = 9.9e-38
Identities = 85/324 (26%), Positives = 168/324 (51%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
+D+ + ++ +N ++ +LC S +++A EV D+M +R PD+ +YTIL+E +
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ EM+D G PDVV+Y +++N C R DEA++ +M ++ C+P+
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++ + S R +A + ++GF P T+N ++ C + A ++++M + G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN+ +Y+ +LH K + + A +RM + G P + TY ++ C + +V+ A
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR-GCYPDIVTYNTMLTALCKDGKVEDA 433
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ I +++ ++G PV+ Y+T+I+ L K A K EM ++P +S+L
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGG 493
Query: 301 LRDEGMEETAVVLAQKIDKLRKTP 324
L EG + A+ + +++ P
Sbjct: 494 LSREGKVDEAIKFFHEFERMGIRP 517
|
|
| TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 92/307 (29%), Positives = 160/307 (52%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
FN L+ TLC+ + + A+ V+ +K +F PD++++ ILL GW K+ + EMK
Sbjct: 183 FNALLRTLCQEKSMTDARNVYHSLK-HQFQPDLQTFNILLSGW---KSSEEAEAFFEEMK 238
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G +PDVV+Y +I+ +C + ++A +L +M P + T+I GLG +
Sbjct: 239 GKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPD 298
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+A + + K+ G P+ YNA + +C + R+ DA +++DEM K G+ PN TY++
Sbjct: 299 KAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFF 358
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTE--PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250
L A ++ ++ RM G E P + +++MF + +VDMAMR+W++M +
Sbjct: 359 RVLSLANDLGRSWELYVRML---GNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVK 415
Query: 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 310
G + L++ LC K+++A K EM++ G RP F +K + +
Sbjct: 416 GFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEV 475
Query: 311 VVLAQKI 317
L QK+
Sbjct: 476 NNLIQKM 482
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9A2 | PP112_ARATH | No assigned EC number | 0.6717 | 0.9757 | 0.6313 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00030457001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (531 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 330 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 3/291 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G++ + F LID ++ V +A + M+ + PD + L+ GQ
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 61 LLSMNEVYREMKDDG--FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIF 118
+ +V EMK + +PD ++ G ++ A +A + D A E+++ + N K +P ++
Sbjct: 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617
Query: 119 CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178
+N + AL + KK+G +P+ ++A+V + ++ A+ ++ + RK
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238
GI T +Y ++ A ++A +++ + + PTVST ++ C Q+
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLP 736
Query: 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
A+ + EMK G+ P YS L+ + +D D + + GI+P
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 8e-22
Identities = 68/285 (23%), Positives = 131/285 (45%), Gaps = 5/285 (1%)
Query: 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102
P + ++ +L+ +++ V R +++ G + D Y +I+ + + D E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW 162
F EM + + H F LI+G ++++A +G + + +P+ +NA++ A
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 163 SMRINDAYRMMDEMR--KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT 220
S ++ A+ ++ EM+ I P+ T ++ AG+ + A V++ M + + T
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGT 613
Query: 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQ 280
Y I V D A+ I+D+MK +GV P +S L++ H LD A + Q
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 281 EMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID--KLRKT 323
+ GI+ +S+L A + + A+ L + I KLR T
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 6e-21
Identities = 66/305 (21%), Positives = 127/305 (41%), Gaps = 27/305 (8%)
Query: 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG 75
L+ + V+RA+EV+ + + + YTI + Q+ + +Y +MK G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL 135
+PD V + +++ A D+A E+ ++ K + +L+ + K +AL
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 136 QFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195
+ + K P T NA++ A C ++ A ++ EM++ G+ PNT TY I+L
Sbjct: 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
Query: 196 IKAGRTEEAYSVFKRMSRKPGTEPTVSTY------------------EIVVRMFCYNAQV 237
+ + + + +++ G +P + E VV Q+
Sbjct: 765 ERKDDADVGLDLLSQ-AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823
Query: 238 D-----MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292
+ A+ ++ E + G LP M + S ++ L DA + + ++GI Q
Sbjct: 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL---QLPHDATLRNRLIENLGISADSQ 880
Query: 293 LFSNL 297
SNL
Sbjct: 881 KQSNL 885
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-17
Identities = 71/320 (22%), Positives = 133/320 (41%), Gaps = 21/320 (6%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GLK + + LI T KS V+ EVF +M + ++ ++ L++G + +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREM--EATNCKPSPHI----- 117
Y M+ +PD V + +I+A + D A ++ EM E P HI
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL 585
Query: 118 FCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
N G R E Q + +G PE Y V + + A + D+M+
Sbjct: 586 MKACANA-GQVDRAKEVYQMIHEYNIKGT-PEV--YTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 178 KCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233
K G+ P+ ++ L+ AG ++A+ + + RK G + +Y ++
Sbjct: 642 KKGVKPD----EVFFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSN 696
Query: 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL 293
A+ +++++K+ + P + + LI +LC ++L A + EM +G+ P
Sbjct: 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 294 FSNLKQALRDEGMEETAVVL 313
+S L A + + + L
Sbjct: 757 YSILLVASERKDDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 2e-13
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125
PDVV+Y +I+ +C + +EA++LF EM+ KP+ + + LI+GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 3e-11
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91
PD+ +Y L++G+ ++ + +++ EMK G +P+V +Y I+I+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 8e-11
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG 54
+N LID CK VE A ++F++MKKR P++ +Y+IL++G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-10
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 219 PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268
P V TY ++ +C +V+ A+++++EMK RG+ P ++ YS LI+ LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 2e-10
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232
P+ TY+ ++ K G+ EEA +F M ++ G +P V TY I++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 2e-10
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREME 107
G +PDVV+Y +I+ C A R DEAVEL EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 71/348 (20%), Positives = 127/348 (36%), Gaps = 69/348 (19%)
Query: 24 RHVERAQEVFDKMKKR-RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--- 79
RH E A E+F+ ++ F +Y L+E K++ + VY ++ GFEPD
Sbjct: 102 RHRE-ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 80 ----------------------------VVSYGIMINAHCSAKRYDEAVELFREMEATNC 111
+ S+G +I A Y EA LFREM
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 112 KPSPHIF---------------------CTLINGLGSEKRLSEAL-QFFGQ-----SKKR 144
P F C L G+ + +S AL + + +
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 145 GFE--PEAPT--YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR 200
F+ PE T +N+++ Y +A + EMR G+ + T+ I++ +
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYS 260
E A + R G + +V ++ +++ A ++D M + ++ ++
Sbjct: 341 LEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WN 395
Query: 261 TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 308
LI + + A + F+ M+ G+ P F + A R G+ E
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-09
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197
TYN ++ YC ++ +A ++ +EM+K GI PN TY I++ L K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-09
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG 75
L+D K +E A+ VFD+M ++ ++ S+ L+ G+G E++ M +G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREM-EATNCKPSPHIFCTLINGLGSEKRLSEA 134
P+ V++ +++A + ++ E+F+ M E KP + +I LG E L EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT-RTYDIVLH 193
++ F+P + A++ A C + + R+ E + G+GP Y ++L+
Sbjct: 482 YAMI---RRAPFKPTVNMWAALLTA-CRIHKNLELGRLAAE-KLYGMGPEKLNNYVVLLN 536
Query: 194 HLIKAGRTEEAYSVFKRMSRK 214
+GR EA V + + RK
Sbjct: 537 LYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 78/386 (20%), Positives = 140/386 (36%), Gaps = 101/386 (26%)
Query: 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMN--EVYREM 71
N LI A++VF +M+ + D S+T ++ G+ +KN L E Y M
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGY--EKNGLPDKALETYALM 380
Query: 72 KDDGFEPD-------------------------------VVSYGI----MINAHCSAKRY 96
+ D PD ++SY + +I + K
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV 156
D+A+E+F + + + ++I GL R EAL FF Q +P + T A
Sbjct: 441 DKALEVFHNIPEKDVIS----WTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAA 495
Query: 157 VGAYCWSMRINDAYRMMDEMR----KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212
+ A C RI A E+ + GIG + + +L ++ GR A++ F
Sbjct: 496 LSA-C--ARIG-ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN--- 548
Query: 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM-KAR--------------------- 250
E V ++ I++ + + + MA+ +++ M ++
Sbjct: 549 ---SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 251 --------------GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSN 296
+ P + Y+ +++ L KL +A + +M I P ++
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGA 662
Query: 297 LKQALRDEGMEETAVVLAQKIDKLRK 322
L A R E + AQ I +L
Sbjct: 663 LLNACRIHRHVELGELAAQHIFELDP 688
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 47/268 (17%)
Query: 16 LIDTLCKSRHVERAQEVFDKMKKRR---FDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
LID K +E A+ VFD M ++ ++ + Y L G+ ++ L + Y EM+
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA--LHGYSEEA--LCL---YYEMR 317
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI-NGLGSE--- 128
D G D ++ IMI +E ++ A LI G +
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLAL----LEHAKQAHAG-----------LIRTGFPLDIVA 362
Query: 129 -----------KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
R+ +A F + ++ ++NA++ Y R A M + M
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237
G+ PN T+ VL +G +E+ + +F+ MS +P Y ++ + +
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478
Query: 238 DMAMRIWDEMKARGVLPVMHMYSTLINS 265
D A + ++ P ++M++ L+ +
Sbjct: 479 DEAYAM---IRRAPFKPTVNMWAALLTA 503
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 87 INAHCSAKRYDEAVELFREMEATNC--KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144
I + R+ EA+ELF +EA C + L+ + K + + +
Sbjct: 94 IEKLVACGRHREALELFEILEA-GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204
GFEP+ N V+ + + DA R+ DEM + N ++ ++ L+ AG EA
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREA 208
Query: 205 YSVFKRM 211
+++F+ M
Sbjct: 209 FALFREM 215
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 3e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPS 114
V+Y +I+ C A R +EA+ELF+EM+ +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 4e-07
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161
P + TLI+G + ++ EAL+ F + KKRG +P TY+ ++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 1e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
Y+TLI+ C + K+++A K F EM GI+P
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 81 VSYGIMINAHCSAKRYDEAVELFREME 107
V+Y +I+ +C A + +EA+ELF+EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
K G+K ++ L+ +++ ++A E+++ +K + P + + L+ +
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L EV EMK G P+ ++Y I++ A D ++L + + KP+ + C
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL-VMCR 793
Query: 121 LINGL 125
I GL
Sbjct: 794 CITGL 798
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 5e-05
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
+G+ P + Y+TLI+ LC ++D+A + EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 57/286 (19%), Positives = 107/286 (37%), Gaps = 56/286 (19%)
Query: 3 KFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ----- 57
+FG + ++ N LI K V A+ VFD+M +R D S+ ++ G+ +
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECL 270
Query: 58 --------------QKNLLSMNEVY------------REMK----DDGFEPDVVSYGIMI 87
+L+++ V REM GF DV +I
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147
+ S + EA ++F ME K + + +I+G +AL+ + ++
Sbjct: 331 QMYLSLGSWGEAEKVFSRME---TKDAVS-WTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 148 PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLI----KAGRTEE 203
P+ T +V+ A C + D + E+ +Y +V + LI K ++
Sbjct: 387 PDEITIASVLSA-CACLGDLDVGVKLHEL---AERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
A VF + K V ++ ++ N + A+ + +M
Sbjct: 443 ALEVFHNIPEK-----DVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT-EEAYSVFKRMSRKPGTEPTVST 223
RI D ++++M K G+ + Y K R +EA+ K + PT+ST
Sbjct: 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLST 439
Query: 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283
+ +++ + + +D A+R+ ++ G+ +Y+TLI++ K+D + F EM+
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 284 DIGIRPPGQLFSNL 297
+ G+ F L
Sbjct: 500 NAGVEANVHTFGAL 513
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 144 RGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
+G +P+ TYN ++ C + R+++A ++DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKP 113
+ +Y ++ A A D A+ + EM+A+ KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 3e-04
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMK 37
+N LID LC++ V+ A E+ D+M+
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGI 287
Y++LI+ C KL++A + F+EM + G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 257 HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
Y+TLI+ LC ++++A + F+EM + GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254
+ TY ++ D+A+ + +EMKA G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 8/147 (5%)
Query: 119 CTLINGLGSEKRLSEALQFFGQSKKRG-FEPEAPTYNAVVGAYCWSMR-INDAYRMMDEM 176
C+ I L + R EAL+ F + F A TY+A+V A C +++ I + +
Sbjct: 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEA-CIALKSIRCVKAVYWHV 149
Query: 177 RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236
G P+ + VL +K G +A +F M + ++ ++
Sbjct: 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA-----SWGTIIGGLVDAGN 204
Query: 237 VDMAMRIWDEMKARGVLPVMHMYSTLI 263
A ++ EM G + ++
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVML 231
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G LP N L+D + + A F+ +K D+ S+ ILL G+
Sbjct: 521 GFDGFLP--NALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMA 573
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME-----ATNCKPSPHIFC 119
E++ M + G PD V++ ++ A + + +E F ME N K H C
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK---HYAC 630
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159
+++ LG +L+EA F K P+ + A++ A
Sbjct: 631 -VVDLLGRAGKLTEAYNFI---NKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
+ TLI+GL R+ EAL+ F + K+RG EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.002
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV 221
TY+ ++ L KAGR EEA +FK M + G EP V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.002
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI 45
+N LID LCK+ VE A E+F +MK+R +PD+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.002
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185
TYN ++ C + R+ +A + EM++ GI P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181
TYN+++ YC + ++ +A + EM++ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.2 bits (80), Expect = 0.003
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 216 GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
G +P V TY ++ C +VD A+ + DEM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRF 41
+N LI CK+ +E A E+F +MK++
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDP 43
+N L+ L K+ + A V ++MK P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80
+Y L++G + + E+++EMK+ G EPDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254
TY ++ C +V+ A+ ++ EMK RG+ P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.82 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.66 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.61 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.51 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.5 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.49 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.46 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.42 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.37 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.35 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.32 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.31 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.29 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.11 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.1 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.09 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.03 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.03 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.03 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.02 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.01 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.97 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.95 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.95 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.91 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.89 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.83 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.82 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.72 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.72 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.69 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.67 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.64 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.57 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.57 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.56 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.52 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.5 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.44 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.43 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.41 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.4 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.38 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.37 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.36 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.35 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.28 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.27 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.23 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.22 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.22 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.19 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.16 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.13 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.05 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.04 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.04 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.04 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.03 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.02 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.93 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.88 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.87 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.87 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.86 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.84 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.81 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.71 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.7 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.65 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.6 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.5 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.48 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.47 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.37 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.36 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.35 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.09 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.89 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 96.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.86 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.76 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.66 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.59 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.58 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.46 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.37 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.3 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.19 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.18 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.16 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 96.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.98 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.92 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.88 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.86 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.85 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.82 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.77 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.34 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.16 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.08 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.03 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.01 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.98 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.92 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.9 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.89 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.69 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 94.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.58 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 94.52 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.51 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.37 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 94.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.17 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.16 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.13 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.11 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.9 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.89 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.59 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.51 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.42 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.41 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.27 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.18 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.11 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.07 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.8 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.63 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 92.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.08 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 91.89 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.85 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.61 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.6 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.51 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.44 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.36 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.14 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.13 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.12 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 91.05 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.9 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.38 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.32 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.31 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.06 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.06 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.85 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.72 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.49 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.31 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.25 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 89.14 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 89.08 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.87 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.81 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.69 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.59 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.51 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 88.47 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.45 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.45 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.29 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.27 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.19 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.04 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 85.46 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 85.43 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.01 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.75 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 84.73 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 84.43 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.19 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.14 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.58 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.09 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.0 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.68 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 82.5 | |
| COG0735 | 145 | Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani | 82.45 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.94 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.69 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.58 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 80.8 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.35 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=408.19 Aligned_cols=325 Identities=19% Similarity=0.330 Sum_probs=311.5
Q ss_pred CCCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh
Q 037620 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 1 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEA--TNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
.+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999976 57899999999999999999999999999999999999999999999999
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+ .+..|+..+|+.++.+|++.|+++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|..++.+|.+.|++++|.+++++|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCC
Q 037620 319 KLRKTPLV 326 (330)
Q Consensus 319 ~~~~~~~~ 326 (330)
+.|..|+.
T Consensus 782 k~Gi~pd~ 789 (1060)
T PLN03218 782 EDGIKPNL 789 (1060)
T ss_pred HcCCCCCH
Confidence 99998864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=395.75 Aligned_cols=318 Identities=21% Similarity=0.353 Sum_probs=312.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHhhCC
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK--RGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999976 6789999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD 245 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 245 (330)
+++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+ .|+.||..+|+.++.+|++.|++++|.++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 246 EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|...|..|+
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C
Q 037620 326 V 326 (330)
Q Consensus 326 ~ 326 (330)
.
T Consensus 754 ~ 754 (1060)
T PLN03218 754 T 754 (1060)
T ss_pred H
Confidence 4
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=360.13 Aligned_cols=303 Identities=18% Similarity=0.311 Sum_probs=181.4
Q ss_pred CCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH
Q 037620 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV 81 (330)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (330)
.+.|+.||..+||.++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 4567788888888888888888888888888888764 677888888888888888888888888887776666655
Q ss_pred HHHHH-----------------------------------HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 82 SYGIM-----------------------------------INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 82 ~~~~l-----------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
+|+.+ +.+|++.|++++|.++|++|. ++|..+|+.++.+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~ 301 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA 301 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHH
Confidence 55444 444444455555555554442 234455555555555
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYS 206 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (330)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|..
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh-c
Q 037620 207 VFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD-I 285 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 285 (330)
+|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .
T Consensus 382 vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 382 VFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 5555432 345555555555555555555555555555555555555555555555555555555555555543 3
Q ss_pred CCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 286 GIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
|+.|+..+|+.++.+|.+.|++++|.++++++
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 55555555555555555555555555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=353.65 Aligned_cols=310 Identities=19% Similarity=0.259 Sum_probs=288.7
Q ss_pred CCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH
Q 037620 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV 81 (330)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (330)
.+.|+.||..+||+||..|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 3568889999999999999999999999999999965 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (330)
||+.++.+|++.|++++|.+++..|.+.|++|+..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 468899999999999
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.++.+..|+..+|+.++.+|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999876799999999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP-PGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
++++++ +..|+..+|+.++.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|++++|.+++++|.+.
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 998765 57899999999999999999999999999999754 44 4779999999999999999999999999999
Q ss_pred CCCC
Q 037620 321 RKTP 324 (330)
Q Consensus 321 ~~~~ 324 (330)
|...
T Consensus 558 g~~k 561 (697)
T PLN03081 558 GLSM 561 (697)
T ss_pred CCcc
Confidence 8753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=357.84 Aligned_cols=313 Identities=18% Similarity=0.254 Sum_probs=181.7
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH
Q 037620 4 FGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY 83 (330)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (330)
.|+.||+.+||+||..|++.|++++|.++|+.|.. ||..+||++|.+|.+.|++++|+++|.+|.+.|+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 34555555555555555555555555555555543 34455555555555555555555555555555555555555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-------------------------------hHHHHHHHHHHhccCcHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPS-------------------------------PHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~~~~~~ 132 (330)
+.++.+|++.|+.+.+.+++..+.+.|+.|| ..+|+.++.+|.+.|+++
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHH
Confidence 5444444444444444444444444444444 445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 56666666666666666666666666666666666666666666666666666667777777777777777777777765
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC----------------------------------------
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV---------------------------------------- 252 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------------- 252 (330)
+ +|..+|+.++.+|++.|+.++|..+|++|.. ++
T Consensus 452 ~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 452 E-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred C-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 4 2333333333333333333333333333332 12
Q ss_pred -------------------------CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCch
Q 037620 253 -------------------------LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGME 307 (330)
Q Consensus 253 -------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 307 (330)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 2344456666666667777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH-hcCCCCCC
Q 037620 308 ETAVVLAQKID-KLRKTPLV 326 (330)
Q Consensus 308 ~~a~~~~~~~~-~~~~~~~~ 326 (330)
++|.++|+.|. +.+..|..
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHHHHhCCCCch
Confidence 77777777776 56666653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=347.95 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=238.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+||..+||.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.|+.||..+++.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46777788888888888888888888888877777777777777777777777777777777777777777777777777
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++.+|++.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 777777788888888777774 3566778888888888888888888888888778888888888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ||..+|+.++.+|++.|++++|.++|++
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88888888888878888888888888888888888888888887753 5677788888888888888888888888
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|.+.|++++|.++|++|.+.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 87777778888888888888888888888888877777777777777777777777777777777777777553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-24 Score=177.10 Aligned_cols=301 Identities=12% Similarity=0.073 Sum_probs=248.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC---hHHHHHHHHHHhcc
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD---VVSYGIMINAHCSA 93 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 93 (330)
...+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|..+++.+......++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677899999999999999863 45677899999999999999999999999987632222 25678889999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhCChhHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA----PTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 169 (330)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998865 667889999999999999999999999999887533221 2355677788899999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
...++++.+.. +.+...+..+...+.+.|++++|...++++... .......++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998864 335667888889999999999999999999862 2122245678899999999999999999999988
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCchHHHHHHHHHHHhcCCCCC
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD---EGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 64 55566788999999999999999999999875 5888888888777664 5689999999999998666554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-23 Score=190.38 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=153.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..++..+.+.|++++|..+++.+.+. .+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3444555555666666666666666665542 23445555566666666666666666666655542 224445555555
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
++...|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 5555556666666555555443 3444555555555555555555555555554443 2344444444555555555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
|...++.+...+ |+..++..+..++...|++++|...++.+.+ ..+.+...+..+...|...|++++|..+|+++.
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 555555544432 2223444444444444555555444444443 122233444444444444444444444444444
Q ss_pred hCCCC--------------------------------ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHH
Q 037620 249 ARGVL--------------------------------PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSN 296 (330)
Q Consensus 249 ~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (330)
+..+. -++..+..+...+...|++++|...++++++.+. .+..++..
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~ 876 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYH 876 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHH
Confidence 43321 1333444455555555555555555555555442 25555555
Q ss_pred HHHHHHhcCchHHHHHHHHHHH
Q 037620 297 LKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
++.++.+.|++++|.+++++|.
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=186.76 Aligned_cols=303 Identities=13% Similarity=0.113 Sum_probs=258.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.+..++..+...+.+.|++++|..+++.+.+.+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 4567889999999999999999999999998753 5577888899999999999999999999998764 5578899999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+...|++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998876 6678889999999999999999999999998874 55678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
++|..+++.+.... +.+...+..+...+...|++++|...++.+.. ..|+..++..+..++...|++++|.+.++.
T Consensus 686 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 686 ESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998875 45777888899999999999999999999886 234556778899999999999999999999
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
+.+.... +...+..+...|...|++++|...|+++.+.. +++...+..+...+...|+ ++|..+++++.+.
T Consensus 762 ~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 762 WLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9887544 78889999999999999999999999998765 3455566666555555555 4455555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=169.05 Aligned_cols=278 Identities=10% Similarity=0.124 Sum_probs=231.4
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++++|..+|+++.+.. +++..++.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 3556789999999999999999999999987532221 2567888999999999999999999999863 45778899
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPS----PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
.++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...++++.+.. +.+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 999999999999999999999987652222 2245667788899999999999999998864 34566788888999
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 240 (330)
.+.|++++|...++++...+......++..++.+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHH
Confidence 99999999999999998864333356788899999999999999999999876 245666678899999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhc---cCChhHHHHHHHHHHhcCCCCChh
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCH---EDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++.|++.
T Consensus 302 ~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 302 QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999998876 5788888888877664 568999999999999877777665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-20 Score=162.39 Aligned_cols=305 Identities=11% Similarity=0.034 Sum_probs=236.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..++.+....|++++|...++.+.+.. |.+...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~ 152 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLR 152 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666677778899999999999988853 4566778888888899999999999999988763 335677888888
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++
T Consensus 153 ~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 153 TLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 8999999999999998887665 3444444444 3477889999999999888776433344455556677888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE----AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
|...++...... +.+...+..+...+...|++++ |...+++... ..+.+...+..+...+...|++++|...+
T Consensus 231 A~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 231 AIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999988764 3356777888889999999885 7888988876 23345677888899999999999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG-QLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
++..+..+. +...+..+..++.+.|++++|+..++++.+.. |+. ..+..+..++...|+.++|...+++..+..+.
T Consensus 308 ~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 308 QQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 998887544 56677778889999999999999999988653 443 33444567788999999999999988776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-20 Score=160.37 Aligned_cols=302 Identities=8% Similarity=0.013 Sum_probs=250.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4456677889999999999999998853 4456667777777888999999999999999874 4467788889999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (330)
.|++++|...++++.... +.+...+..+...+...|++++|...+..+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999999875 6778889999999999999999999999887764 2233344333 347889999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH----HHHHHHHHH
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM----AMRIWDEMK 248 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~ 248 (330)
++.+.+....++......+..++...|++++|...+++.... .+.+...+..+...+...|++++ |...+++..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 999887643344555566678889999999999999999873 34456778889999999999986 899999998
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++....+.
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 87654 67889999999999999999999999999764 345667778899999999999999999999876553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-18 Score=151.87 Aligned_cols=310 Identities=10% Similarity=0.015 Sum_probs=198.5
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHH----------------
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYR---------------- 69 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------- 69 (330)
+.|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|+..|.
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45666777777777888888888888887777643 3345566666667777777666654332
Q ss_pred --------------------------------------------------------------------------------
Q 037620 70 -------------------------------------------------------------------------------- 69 (330)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (330)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred ----HHHhCC-CCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 70 ----EMKDDG-FEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 70 ----~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
...+.+ ..| ....+..+...+...|++++|+..|++..+.. |.....|..+..++...|++++|...++++.+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222211 011 22334444555556677777777777766654 44455666667777777777777777777766
Q ss_pred cCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH
Q 037620 144 RGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223 (330)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (330)
.. +.+...+..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|+..+++..+ ..+.+...
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~ 469 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDV 469 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHH
Confidence 53 3455667777777777777777777777777653 22455666677777777777777777777765 23334556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH------HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM------HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
++.+...+...|++++|...|++..+.....+. ..++..+..+...|++++|..++++.+... +.+...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 777777777788888888888777665322111 111222223334578888888888777654 2334467778
Q ss_pred HHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 298 KQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
...+.+.|++++|.+.+++..+...
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhc
Confidence 8888888888888888887766543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-18 Score=146.52 Aligned_cols=302 Identities=12% Similarity=0.038 Sum_probs=240.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
+......+.+.|++++|+..|+...+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 556677888999999999999998874 5788889999999999999999999999999874 3367788889999999
Q ss_pred cCcHHHHHHHHHHHHhcC-----------------------------CCCChHHHHHHHH--------------------
Q 037620 93 AKRYDEAVELFREMEATN-----------------------------CKPSPHIFCTLIN-------------------- 123 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~-------------------- 123 (330)
.|++++|+..|..+...+ .+++...+..+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999987665443211 0111000000000
Q ss_pred ----------HH------hccCcHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH
Q 037620 124 ----------GL------GSEKRLSEALQFFGQSKKRG--FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185 (330)
Q Consensus 124 ----------~~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (330)
.+ ...+++++|.+.|+...+.+ .+.....+..+...+...|++++|...+++...... ...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcH
Confidence 00 12257889999999988764 123455788888889999999999999999988632 246
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (330)
..|..+...+...|++++|...++...+. .+.+..+|..+...+...|++++|...|++..+.... +...+..+..+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~ 442 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH
Confidence 68888899999999999999999998773 3345678889999999999999999999999987654 66778888899
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+.|++++|+..+++.++.. +.+...+..+...+...|++++|.+.+++......
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 999999999999999998753 44578888999999999999999999999887654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-17 Score=151.29 Aligned_cols=307 Identities=10% Similarity=0.028 Sum_probs=172.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCC-ChHHHH------------HHHHHHhhccChHHHHHHHHHHHhCC
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDP-DIKSYT------------ILLEGWGQQKNLLSMNEVYREMKDDG 75 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (330)
+...+..+...+.+.|++++|+..|++..+..... ....|. .....+.+.|++++|+..|+++.+..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45556666666666666666666666665532111 111111 11234455666666666666666653
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHH---------------------------------
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI--------------------------------- 122 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------------------------- 122 (330)
+.+...+..+..++...|++++|++.|+++.+.. +.+...+..+.
T Consensus 382 -P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 382 -NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2244555556666666777777777776666543 33333332222
Q ss_pred ---------HHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 123 ---------NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 123 ---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
..+...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|...++++.+... .+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 22334566666666666666553 22444555666666666666666666666655321 12222222222
Q ss_pred HHHHcCCHHHHHHHHHHhhcCC--------------------------------------CCCCchHHHHHHHHHHHhCC
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKP--------------------------------------GTEPTVSTYEIVVRMFCYNA 235 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~--------------------------------------~~~~~~~~~~~l~~~~~~~~ 235 (330)
.+...++.++|...++.+.... ..+.+...+..+...+...|
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 2222333333333322221000 01223334556667777778
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
++++|+..|++..+..+. +...+..++..+...|++++|+..++.+.+.. +.+..++..+..++...|++++|.++++
T Consensus 618 ~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888887776544 56777778888888888888888888776542 2344556667777778888888888888
Q ss_pred HHHhcC
Q 037620 316 KIDKLR 321 (330)
Q Consensus 316 ~~~~~~ 321 (330)
++....
T Consensus 696 ~al~~~ 701 (1157)
T PRK11447 696 RLIPQA 701 (1157)
T ss_pred HHhhhC
Confidence 877654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=138.88 Aligned_cols=305 Identities=15% Similarity=0.135 Sum_probs=178.1
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH-H
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG-I 85 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 85 (330)
+.-..+|..+...+-..|++++|+.+++.+.+.. +-.+..|..+..++...|+.+.|.+.|...++. .|+..... .
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3346778999999999999999999999999853 336788999999999999999999998888765 34433322 2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-------------------
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF------------------- 146 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 146 (330)
+...+...|+.++|...|.+.++.. +--..+|+.|...+...|+...|++.|++..+.+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 2233333455555555555544433 23334444455555555555555555555444420
Q ss_pred --------------CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 147 --------------EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 147 --------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+.....+..+...|...|..+.|+..+++..+... --+..|+.|..++-..|+..+|.+.+.+..
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 22233344444444455555555555555544321 123456666666666666666666666655
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-h
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-G 291 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 291 (330)
.-. +......+.|...|...|.++.|..+|....+-... -...++.|...|-+.|++++|+..+++.+. +.|+ .
T Consensus 348 ~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 348 RLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 411 112334455666666666666666666655543222 233456666666666666666666666653 3444 3
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 292 QLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
..|..+...|...|+...|.+.+.+....+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 456666666666666666666666554443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-16 Score=148.48 Aligned_cols=295 Identities=12% Similarity=0.078 Sum_probs=197.6
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH--------------
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY-------------- 83 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 83 (330)
..+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+... .+...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHH
Confidence 34555566666666666655532 33444555555556666666666666666554421 112111
Q ss_pred ----------------------------HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 84 ----------------------------GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 84 ----------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
..+...+...|++++|++.|++..+.. |.+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 122334455677888888888777765 556667777777788888888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHH--------------------------------------------HHHhhCChhHHHH
Q 037620 136 QFFGQSKKRGFEPEAPTYNAVVG--------------------------------------------AYCWSMRINDAYR 171 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------~~~~~~~~~~a~~ 171 (330)
..++++.+.. +.+...+..+.. .+...|+.++|..
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8887776642 223333322222 3344455555555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 172 MMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
+++. .+.+...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..+...|++++|++.++.+.+..
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 4441 2345567778888999999999999999999873 34467788899999999999999999999887764
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC--C---ChhhHHHHHHHHHhcCchHHHHHHHHHHHh-cCCCC
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR--P---PGQLFSNLKQALRDEGMEETAVVLAQKIDK-LRKTP 324 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~ 324 (330)
.. +...+..+..++...|++++|..++++++..... | +...+..+...+...|++++|...+++... .+..|
T Consensus 668 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 33 5566777888899999999999999999864321 1 224566678889999999999999998863 33443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-16 Score=138.92 Aligned_cols=309 Identities=12% Similarity=0.046 Sum_probs=199.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
.+...+..+...+...|++++|.++|+...+.. |.+...+..+...+...|++++|+..++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 344457888888888888888888888887742 4456677777788888888888888888888773 33555 77778
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHH----------------------------
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFG---------------------------- 139 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------- 139 (330)
.++...|+.++|+..++++.+.. |.+...+..+..++...+..+.|++.++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888888888888888888775 5556666666666655555554443333
Q ss_pred ------------------HHHhc-CCCCChh-hHH----HHHHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHH
Q 037620 140 ------------------QSKKR-GFEPEAP-TYN----AVVGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDIVLHH 194 (330)
Q Consensus 140 ------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 194 (330)
.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. ....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 22221 0111111 110 1122345667788888888887776422 221 22224667
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-----------Ccc---HHH
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEP--TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-----------LPV---MHM 258 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~ 258 (330)
|...|++++|...|+++.+.....+ .......+..++...|++++|..+++.+.+... .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 7788888888888887765222111 123445556667778888888888877765421 122 123
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+..+...+...|+.++|+.+++++.... +.+...+..+...+...|++++|++.+++..+..+
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 4455666777778888888877777643 34566667777777777777777777777766553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=135.34 Aligned_cols=302 Identities=15% Similarity=0.131 Sum_probs=230.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCC--------------------------------CCC-hHHHHHHHHHHh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF--------------------------------DPD-IKSYTILLEGWG 56 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~-~~~~~~l~~~~~ 56 (330)
+..|..+..++...|+.+.|.+.|...++... .|. ...|..|...+-
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN 229 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHh
Confidence 44566666666666666666666655554310 111 223444555555
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQ 136 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (330)
..|+...|+..|++..+.+ +--...|-.|...|...+.+++|...|.+..... +....++..+...|...|..+.|+.
T Consensus 230 ~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~ 307 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAID 307 (966)
T ss_pred hcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHH
Confidence 6777777777777777653 1134567778888888888888888888877664 5567778888888888999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 037620 137 FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG 216 (330)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (330)
.+++..+.. +.-+..|+.|..++-..|++.+|...+.+..... +-.....+.|...+...|.+++|..+|....+
T Consensus 308 ~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--- 382 (966)
T KOG4626|consen 308 TYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--- 382 (966)
T ss_pred HHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---
Confidence 999988873 3346789999999999999999999999988753 22456788899999999999999999998876
Q ss_pred CCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhh
Q 037620 217 TEPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV-MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-GQL 293 (330)
Q Consensus 217 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 293 (330)
+.|. ....+.|...|-++|++++|+..|++.+.- .|+ ...|+.+...|-..|+.+.|++.+.+.+.. .|. ...
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeA 458 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEA 458 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHH
Confidence 3343 456788999999999999999999998764 444 467888889999999999999999999864 344 567
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+..|...|..+|+..+|+.-+++..+..+
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 88899999999999999999998887765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-16 Score=128.47 Aligned_cols=285 Identities=11% Similarity=0.042 Sum_probs=223.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHH-HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH--HHHHHHhccCcHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKS-YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG--IMINAHCSAKRYDEA 99 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a 99 (330)
.|++++|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888766532 22333 333455568999999999999999876 55554333 336788899999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHhhCChhHHHHH
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP-------TYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 172 (330)
...++++.+.. |-++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999887 7788999999999999999999999999999886543221 223333333444555666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
++.+.+. .+.++.....+...+...|+.++|...+++..+ .+|+... .++.+....++.+++.+..+...+..+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 6666443 345778889999999999999999999999876 3444432 234445566999999999999988765
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
. |+..+..+.+.+.+.+++++|.+.|+++.+. .|+...+..+..++.+.|+.++|.+++++....-
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5 7778889999999999999999999999965 6899999999999999999999999999886543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-16 Score=128.10 Aligned_cols=292 Identities=9% Similarity=-0.018 Sum_probs=215.9
Q ss_pred HccCChHHHHHHHHHHhhCCCCCCh-HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCcHH
Q 037620 21 CKSRHVERAQEVFDKMKKRRFDPDI-KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV--VSYGIMINAHCSAKRYD 97 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~ 97 (330)
...|+++.|.+.+....+. .|+. ..+-....++...|+.+.|.+.+.+..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 3569999999999887774 3443 344455677888999999999999988763 444 34444578888999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH-HHHHHH---HhhCChhHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN-AVVGAY---CWSMRINDAYRMM 173 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 173 (330)
.|...++.+.+.. |-++.+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.....+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999987 778889999999999999999999999999998754 333332 111222 2333333334455
Q ss_pred HHHHHcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 174 DEMRKCGI---GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 174 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
..+..... +.+...+..+...+...|+.++|.+++++..+.....++..............++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55554322 137788889999999999999999999999873222221110111222234457888899999888776
Q ss_pred CCCccH--HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 251 GVLPVM--HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 251 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433 44 567789999999999999999999644445578988899999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-15 Score=135.13 Aligned_cols=310 Identities=11% Similarity=0.004 Sum_probs=229.1
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
|.+...+..+...+...|++++|+..++.+.+. .|.+.. +..+..++...|+.++|+..++++.+..+ .+...+..+
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~l 156 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEY 156 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 445667888888999999999999999999885 355666 88888999999999999999999998742 255555556
Q ss_pred HHHHhccCcHHHHH----------------------------------------------HHHHHHHhc-CCCCChH-HH
Q 037620 87 INAHCSAKRYDEAV----------------------------------------------ELFREMEAT-NCKPSPH-IF 118 (330)
Q Consensus 87 l~~~~~~~~~~~a~----------------------------------------------~~~~~~~~~-~~~~~~~-~~ 118 (330)
..++...+..+.|+ +.++.+.+. ...|+.. .+
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 66665555555444 444444432 1112111 11
Q ss_pred H----HHHHHHhccCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC---cHHHHHH
Q 037620 119 C----TLINGLGSEKRLSEALQFFGQSKKRGFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP---NTRTYDI 190 (330)
Q Consensus 119 ~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 190 (330)
. ..+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|...|+.+....... .......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 1133456779999999999999887532 222 22335778999999999999999987653211 1345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCC----------CCCc---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPG----------TEPT---VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (330)
+..++...|++++|...++.+..... ..|+ ...+..+...+...|+.++|+++++++....+. +..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~ 394 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQG 394 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 77788999999999999999876321 1223 234556778889999999999999999887554 678
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+..+...+...|++++|++.+++.++.. +.+...+...+..+.+.|++++|..+++++.+..+
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999764 33466777777889999999999999999987654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-19 Score=138.85 Aligned_cols=259 Identities=14% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHhhccChHHHHHHHHHHHhCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDG-FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
...+.+.|++++|++++....... .+.+...|..+...+...++++.|.+.++++...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445555556666666554433322 12233334444444455555666666666655544 3344445555544 45556
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037620 131 LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (330)
+++|.+++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666555554433 2344445555555556666666666666554321 23344555555566666666666666666
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+..+ ..+.|......++..+...|+.+++.++++...+.. ..|+..+..+..++...|+.++|+.++++..... +.
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 6554 122234445555666666666666665555555442 2244445556666666666666666666665533 33
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|+.....+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55555566666666666666666655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-15 Score=116.83 Aligned_cols=247 Identities=15% Similarity=0.281 Sum_probs=191.7
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
.|-+..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-. .-.+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 35577899999999999999999999999998887888999999999765433 22789999999999999999999
Q ss_pred HHHHHhccCcHHH----HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH-HHHHHHHHHhc----CCC----CChhh
Q 037620 86 MINAHCSAKRYDE----AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE-ALQFFGQSKKR----GFE----PEAPT 152 (330)
Q Consensus 86 ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~ 152 (330)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++..+... .+. .+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998764 57788899999999999999999999999888754 45555555432 122 24445
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcC----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCG----IGPN---TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYE 225 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (330)
|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.+.. .-+-|+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHH
Confidence 6677788888888888887766554311 2232 23455666777778888888888888876 56678888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (330)
.++++....+.++-..++|.+++..|...+..
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 88888888888888888888888776443333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-19 Score=138.18 Aligned_cols=262 Identities=14% Similarity=0.116 Sum_probs=114.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCC-CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRR-FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 66888999999999999997655433 2445566677777888899999999999999987533 66677777777 789
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhhCChhHHHHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG-FEPEAPTYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (330)
+++++|.++++...+.. +++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876543 567778888999999999999999999987543 345777888899999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
+++..+..+ .+......++..+...|+.+++..+++...+. .+.+...+..+..++...|+.++|..++++..+...
T Consensus 169 ~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 999998742 25778889999999999999999999888763 245566778899999999999999999999988654
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
. |+.....+..++...|+.++|..+.+++..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 888889999999999999999999887753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-14 Score=127.31 Aligned_cols=303 Identities=10% Similarity=0.011 Sum_probs=212.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhC-C-CCCChHHHHHHHHHHhhccC---hHHHHHH----------------
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-R-FDPDIKSYTILLEGWGQQKN---LLSMNEV---------------- 67 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~---------------- 67 (330)
+....-.+-....+.|+.++|.++|+..... + ..++.....-++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 3344444455567788888998888887762 1 12233444466666666655 2233222
Q ss_pred ------HHHHHhC-C-CCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 68 ------YREMKDD-G-FEP--DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137 (330)
Q Consensus 68 ------~~~~~~~-~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (330)
....... + .++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111111 1 133 56677777777766 78888888888777654 4544444445555688999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 037620 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (330)
++++... +|+...+..+...+.+.|++++|...++...+.. +.....+..+.......|++++|...+++..+ .
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l 605 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---I 605 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---h
Confidence 9887655 4455556667778888899999999998888764 22333333444444566999999999998876 4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 218 EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
.|+...+..+..++.+.|++++|...+++..+..+. +...++.+..++...|++++|+..+++.++.. +-+...+..+
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nL 683 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQL 683 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456777888888899999999999999998887655 66778888888888999999999999888754 3467778888
Q ss_pred HHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 298 KQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
..++...|++++|...+++..+..+
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8889999999999999988877664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-14 Score=129.38 Aligned_cols=270 Identities=8% Similarity=-0.023 Sum_probs=213.4
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888887776 8899999988888776 456555444555667899999999999998654 455556677788
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
.+.+.|++++|...+.+..+.. +.....+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999998874 3333333333344445699999999999998854 568889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|...+++... ..+.+...+..+..++...|++++|+..+++..+..+. +...+..+..++...|++++|+..+++..
T Consensus 628 A~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987 23445667888888999999999999999999987654 67889999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 284 DIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
+.. +-+..+.........+..+++.+.+-++......+..+
T Consensus 705 ~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 705 DDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred hcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 754 22345555667777777888888888877766655443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-14 Score=108.77 Aligned_cols=293 Identities=12% Similarity=0.095 Sum_probs=234.9
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
.|+|.+|+++..+-.+.+- .....|..-..+.-+.|+.+.+-.++.+..+..-.++....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5999999999998777653 234567777788889999999999999998874455666777778889999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA-------PTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
++++.+.+ +-++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.....++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999887 778889999999999999999999999999998866554 3466666666666666666667776
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (330)
.... .+-++..-..++.-+.+.|+.++|.++..+..+ ....|+. ...-.+.+-++...-.+..+.-.+.... +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 6543 445677778888999999999999999999887 4555552 2223456777888777777766554322 4
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCC
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 326 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 326 (330)
+..+.+|...|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+.++|.++.++....-.+|+.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 578899999999999999999999988754 799999999999999999999999999998866665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-14 Score=122.95 Aligned_cols=299 Identities=14% Similarity=0.122 Sum_probs=175.7
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDE 98 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (330)
.+...|++++|+++|+.+.+.. |-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 4445555555555555555532 223444445555555555555555555555544 3333333333333333344444
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHH--------------------------------------
Q 037620 99 AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQ-------------------------------------- 140 (330)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------------------------------- 140 (330)
|++.++++.+.. |.+...+..+..+..+.|-...|.++..+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 555666555554 44444444444444444433333322221
Q ss_pred ----------HHhc-CCCCCh-hhH----HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 141 ----------SKKR-GFEPEA-PTY----NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 141 ----------~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
+... +-.|.. ..| .-.+-++...++..++++.++.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 1110 000110 011 122344556677788888888888776655566777888888888888888
Q ss_pred HHHHHHhhcCCC----CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-----------CccH---HHHHHHHHHH
Q 037620 205 YSVFKRMSRKPG----TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-----------LPVM---HMYSTLINSL 266 (330)
Q Consensus 205 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~ 266 (330)
..+++.+....+ ..++......|..++..++++++|..+++.+.+..+ .||+ ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 888888765322 123343356788888888888888888888876322 1222 2234456677
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
...|+..+|.+.++++.... +-|......+...+...|.+.+|.+.++......+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 78888888888888887654 45777788888888888888888888877665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-15 Score=122.31 Aligned_cols=288 Identities=11% Similarity=0.070 Sum_probs=224.1
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF--EPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
+.++|+..|..+.+. +.-+......+..+|...+++++|.++|+.+.+... .-+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567899999996663 344557777889999999999999999999987621 1255667766643322 122333
Q ss_pred H-HHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC
Q 037620 103 F-REMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181 (330)
Q Consensus 103 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (330)
+ +.+.+.. +..+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3344444 6788999999999999999999999999999884 33778899888888999999999999998876432
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
+ +-..|..+.-.|.+.++++.|+-.|++..+ --+-+.+....+...+.+.|+.++|+.++++....+.+ |+-.--.
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2 334566677889999999999999999876 33445666777788889999999999999999988766 5555555
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.+..+...+++++|+..++++.+.- +.+...|..+.+.|.+.|+.+.|..-+.-+....+++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6677788999999999999998752 3456678888999999999999998888777766654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-14 Score=112.22 Aligned_cols=308 Identities=18% Similarity=0.273 Sum_probs=233.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHH--hhccChHH-HHHHHHHHHhCC-----------
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGW--GQQKNLLS-MNEVYREMKDDG----------- 75 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~-a~~~~~~~~~~~----------- 75 (330)
+.+=|.|+.. ...|.++++.-+|+.|.+.|++.+...-..|++.- ....++-- -++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3445566544 46788999999999999999888887766665542 22222211 122333333221
Q ss_pred --------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 76 --------FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147 (330)
Q Consensus 76 --------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (330)
.+.+..++..+|.++++-...++|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 244778999999999999999999999999988777999999999987654332 27788999999999
Q ss_pred CChhhHHHHHHHHHhhCChhH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhc-------CC
Q 037620 148 PEAPTYNAVVGAYCWSMRIND----AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE-AYSVFKRMSR-------KP 215 (330)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-------~~ 215 (330)
||..|+|+++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ +..++..+.. ++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788899999999999999999999998887744 4444444432 11
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 037620 216 GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR 288 (330)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (330)
..+.+...|...+..|.+..+.+.|.++..-+... -+.|+ ..-|..+....++....+.-..+|+.|+-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 22334556777888888999999888887666532 12222 233566777888899999999999999987788
Q ss_pred CChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 289 PPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
|+..+...++++..-.|.++-.-++|.++...|.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999887774
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-13 Score=121.06 Aligned_cols=295 Identities=13% Similarity=0.078 Sum_probs=213.4
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... +........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 35668899999999999998753 443 233 77788888899999999999988321 2233334444668888899
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
+++|+++|+++.+.. |.++..+..++..+...++.++|++.+.++... .|+...+..++..+...++..+|+..+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999887 667788888888999999999999999999877 45555554444444445666669999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------------------------
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK---------------------------------------------- 209 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------- 209 (330)
+.+.. +.+...+..+..++.+.|-...|.++..
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 98864 2355566666666655554444433333
Q ss_pred --HhhcCCCCCCch-HH----HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 210 --RMSRKPGTEPTV-ST----YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 210 --~~~~~~~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
.+...-+..|.. .. ..-.+-++...|++.++++.|+.+...+......+-..+..+|...+.+++|..+++.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 222211222321 11 12334567788999999999999998876544557788999999999999999999999
Q ss_pred HhcC-----CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 283 LDIG-----IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 283 ~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
.... ..++......|..++...+++++|..+++++.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 7643 1223333577899999999999999999999874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-13 Score=117.43 Aligned_cols=309 Identities=12% Similarity=0.092 Sum_probs=226.1
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
++|.....-.....+...|++++|.+++.++.+.. |.....|.+|...|-..|+.+++...+-...... +-|...|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 33444444555555566699999999999999853 6678899999999999999999998887776654 447789999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN----AVVGAYC 161 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~ 161 (330)
+.....+.|.+.+|.-+|.+.++.. |++...+-.-...|-+.|+...|...|.++.+...+.+..-+. ..++.+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 7787777778889999999999999999998874322222222 3344555
Q ss_pred hhCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---------------------------
Q 037620 162 WSMRINDAYRMMDEMRKC-GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR--------------------------- 213 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------- 213 (330)
..++-+.|.+.++..... +-..+...++.++..+.+..+++.|.........
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 666667777777766541 2223444556666666666666665555444332
Q ss_pred ---------------------------------CCC--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHH
Q 037620 214 ---------------------------------KPG--TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHM 258 (330)
Q Consensus 214 ---------------------------------~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 258 (330)
... ..-+...|.-+..++.+.|++.+|..++..+......-+...
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 011 112334456677788888888888888888887655556778
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|-.+.++|...|.+++|...|++.+... +.+...-..|...+.+.|+.++|.++++.+.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888888888888999999888888653 3345566677778888889988888888765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-13 Score=114.51 Aligned_cols=256 Identities=9% Similarity=0.053 Sum_probs=202.6
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHH--HHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYT--ILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
.....+.|+++.|.+.+..+.+. .|+..... .....+...|+++.|...++.+.+.. +-+...+..+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 44558899999999999999874 45554333 33678889999999999999999886 447788889999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 95 RYDEAVELFREMEATNCKPSP-------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999987644322 13333444444555666777777776554 3557888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|..++++..+. +++... .++.+....++.+++....+...+ ..+-|...+..+...+...+++++|.+.|+..
T Consensus 281 ~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 281 TAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999884 345422 233344456999999999999887 34455667788999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.+. .|+...+..+...+.+.|+.++|..++++.+.
T Consensus 355 l~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 355 LKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 876 57888889999999999999999999998864
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-13 Score=114.88 Aligned_cols=274 Identities=8% Similarity=-0.040 Sum_probs=198.2
Q ss_pred CCChhh-HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH
Q 037620 7 KQELPD-FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY 83 (330)
Q Consensus 7 ~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (330)
.|+... +-.....+...|+.+.|.+.+....+.. |+. .........+...|+++.|...++.+.+.. +-+...+
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l 190 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVL 190 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 344333 3444577888899999999999987643 443 344445788889999999999999999985 3377788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHH-HHHHHH---hccCcHHHHHHHHHHHHhcC---CCCChhhHHHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC-TLINGL---GSEKRLSEALQFFGQSKKRG---FEPEAPTYNAV 156 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 156 (330)
..+...+...|++++|.+.+..+.+.+.. +...+. .-...+ ...+..+...+.+..+.+.. .+.+...+..+
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~ 269 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL 269 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH
Confidence 89999999999999999999999988743 333332 111111 22233333334444444432 12378888999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY-DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA 235 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (330)
...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.....|+.....++...+.+.|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 99999999999999999999986432221111 11112223457888899999888774333343256678899999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999655555578888899999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-13 Score=108.20 Aligned_cols=291 Identities=11% Similarity=0.085 Sum_probs=215.0
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHhccCc
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF--EPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~ 95 (330)
.++....+.+++..-.+.....|.+-+...-+....+.-...++++|+.+|+++.+..+ --|..+|..++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34445567788888888888878776666666666667778899999999999988731 1155677666533 3322
Q ss_pred HHHHHHHHH-HHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 96 YDEAVELFR-EMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 96 ~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
.. +..+- .....+ +--+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+.++
T Consensus 313 sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 12221 122222 4456678888888999999999999999999886 4466788889999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc
Q 037620 175 EMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (330)
...+.+ +-|-..|-.+.++|.-.+.+.=|+-.|++..+ -.+-|...|.+|..+|.+.++.++|++.|.+....|-.
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 998865 34788999999999999999999999999876 34457788999999999999999999999998887644
Q ss_pred cHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCC-CC-ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLD----IGI-RP-PGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
+...+..|...|-+.++.++|...|++-++ .|. .| ......-|...+.+.+++++|........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 667899999999999999999998887764 232 22 12222335556677777777766554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-13 Score=101.62 Aligned_cols=287 Identities=13% Similarity=0.125 Sum_probs=212.6
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh------HHHHHHHHHHhccCcH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV------VSYGIMINAHCSAKRY 96 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~ 96 (330)
.++.++|.++|-+|.+. -+-+..+--+|.+.|.+.|..+.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 57899999999999984 2445566778889999999999999999999875 332 2345567788899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhhCChhHHHHH
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP----TYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~ 172 (330)
+.|+.+|..+.+.+ .--......|+..|-...+|++|+++-.++.+.+-.+... .|--+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 4556778889999999999999999999988875433221 233344444556789999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
+.+..+.+.. ....--.+.+.+...|+++.|.+.++.+.+. +..--..+...|..+|...|+.++....+.++.+...
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9998886432 4445556678888999999999999999872 3333345677888999999999999999999887644
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCchHHHHHHHHHHHhc
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD---EGMEETAVVLAQKIDKL 320 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 320 (330)
.++ .-..+.+.-....-.+.|...+.+-+.. .|+...+..++..... .|...+....+++|...
T Consensus 281 g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred Ccc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333 3334444334444556677666665543 6899999999886543 44567777777777643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-13 Score=101.00 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=197.2
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC---ChHHHHHHHHHHhccCcHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKP---SPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 133 (330)
-.++.++|.++|-+|.+.. +-+..+--+|.+.|.+.|..++|+++.+.+.++.--+ ...+...|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578999999999999863 3355566788899999999999999999988653111 12344567788999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 037620 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT----RTYDIVLHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 209 (330)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|..+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998865 334567788999999999999999999999887654432 456777777888899999999999
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+..+. .+..+..--.+.+.....|+++.|.+.|+.+.+.+...-+.+...|..+|.+.|+.++...++.++.+.. +
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 98862 2334444456778889999999999999999999877777889999999999999999999999998754 3
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
....-..+.+.-....-.+.|..++.+-.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44444444444444444555555554433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=113.93 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=210.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHH-HHHHhCCCCCChHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVY-REMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l 86 (330)
..+...+..+|...+++++|..+|+.+.+.. ..-+...|.+.+..+-+ +-++..+ +.+.+.. +-.+.+|.++
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~ 427 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCAL 427 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHh
Confidence 3566778889999999999999999998742 12267788888865533 2223333 3344432 5578999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+...... +.+-..|--+...|.+.+++
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchh
Confidence 999999999999999999999887 5689999999999999999999999999987652 22333455567789999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
+.|+-.|+...+.+.. +......+...+.+.|+.++|+.++++...- .+-|+..--.-+..+...+++++|+..+++
T Consensus 506 e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 9999999999886533 5666777788889999999999999998762 223343434456677889999999999999
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR 288 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (330)
+++.-+. +...|..+...|.+.|+.+.|+.-|.-+.+...+
T Consensus 583 Lk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 583 LKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9987433 6677888899999999999999999888865433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-13 Score=113.99 Aligned_cols=268 Identities=11% Similarity=0.051 Sum_probs=186.9
Q ss_pred CCChHHHHHHHHHHhh-----ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh---------ccCcHHHHHHHHHHHH
Q 037620 42 DPDIKSYTILLEGWGQ-----QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC---------SAKRYDEAVELFREME 107 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 107 (330)
+.+...|...+.+... .+++++|..+|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 245678999999998874 224555655555443 2345889999999999
Q ss_pred hcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHH
Q 037620 108 ATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRT 187 (330)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (330)
+.+ |.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 887 7788888888889999999999999999998885 445677888888999999999999999999886433 2233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
+..++..+...|++++|...+++.... .+| +...+..+..++...|++++|...++++...... +....+.+...|
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHH
Confidence 334455567789999999999988752 223 3445677788888999999999999887655322 344455666677
Q ss_pred hccCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 267 CHEDKLDDACKYFQEMLDI-GIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
...| +.|...++++.+. ...+....+ +...+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4788877777652 112222222 33444555666666555 6666544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-13 Score=102.70 Aligned_cols=202 Identities=14% Similarity=0.049 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH 194 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (330)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3445555555555666666666665555442 22344555555556666666666666665555432 234455555666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
+...|++++|...+++.............+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666542222223344555666677777777777777776665432 44566667777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777777665 2344555556666677777777777776666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-12 Score=111.38 Aligned_cols=250 Identities=16% Similarity=0.130 Sum_probs=151.9
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhh---------ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ---------QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
++++|...|++..+.. |-+...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3567777777777642 2344556555544432 234677888888777764 3366677777777777788
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
+++|...|++..+.+ |.+...+..+..++...|++++|...++++.+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888877776 556677777777788888888888888887776421 222333344445567777888888777
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCc
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLP 254 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 254 (330)
......+.+...+..+..++...|+.++|...+.++.. ..+.+....+.+...|...| +.|...++.+.+. .-.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76543222444566666777778888888888777654 12223334445555566666 3666666665542 1112
Q ss_pred cHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11122 23334445665555554 666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-12 Score=105.35 Aligned_cols=291 Identities=10% Similarity=0.036 Sum_probs=235.5
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
|+.-++.....-.+.+...+++.+..++++.+.+. .|+....+..-|.++...|+..+...+=.+|.+. .|-.+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 45566777777888888999999999999999985 4778888888888999999999888888888887 355789999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
++.-.|...|...+|.+.|.+....+ +.-...|-....+|.-.|..++|...+..+.+.= +-.-.-+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 99999999999999999999988766 5556789999999999999999999998887651 111112233444577889
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC----CC-CchHHHHHHHHHHHhCCCHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG----TE-PTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~ 239 (330)
+.+.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+.....-. -. --..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999988753 44777888888777888999999999988763111 11 133468899999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
|+..++........ +..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..+..
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 99999999988666 88899999999999999999999999998 567888777766665443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-12 Score=97.73 Aligned_cols=268 Identities=9% Similarity=0.077 Sum_probs=217.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.|-.-..+.-..|+.+.+-.++.+..+....++...+-+........|+.+.|..-++++.+.+ +-++........+|.
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~ 198 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 4555567777889999999999999886445667778888889999999999999999999986 447788889999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 92 SAKRYDEAVELFREMEATNCKPSP-------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
+.|++.....++.++.+.+.-.++ .+|..+++-....+..+.-...++...+. ...++..-..++.-+..+|
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLG 277 (400)
T ss_pred HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcC
Confidence 999999999999999998865544 46677777777777777767777777655 3556777888889999999
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
+.++|.++.++..+++..|+ .. ..-.+.+.++...-.+..+.-.+..+..| ..+.+|...|.+++.|.+|...|
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred ChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999876655 22 22334567788887777777766445555 67889999999999999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+...+. .|+..+|+.+..++.+.|+..+|.++.++.+-.-.+|
T Consensus 352 eaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 352 EAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 976664 6899999999999999999999999999877433333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-12 Score=100.11 Aligned_cols=250 Identities=11% Similarity=0.111 Sum_probs=177.9
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHhccCcHH-HHHH
Q 037620 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNC--KPSPHIFCTLINGLGSEKRLS-EALQ 136 (330)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~-~a~~ 136 (330)
+.+++..-...+...|.+-+...-+....+.....+++.|+.+|+++.+... -.|.++|+.++-+-.....+. .|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 3344444444444445444443334444444555566666666666655430 113445554442221111111 0111
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 037620 137 FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG 216 (330)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (330)
++ .+. +-.+.|.-.+.+-|.-.++.+.|...|++..+.+.. ....|+.+.+-|....+...|.+.++...+ -
T Consensus 322 v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i 393 (559)
T KOG1155|consen 322 VS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--I 393 (559)
T ss_pred HH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--c
Confidence 11 111 123445556666777788999999999999986533 567899999999999999999999999987 4
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHH
Q 037620 217 TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSN 296 (330)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (330)
.+.|-..|-.|.++|.-.+.+.=|+-.|++..+..+. |...|.+|..+|.+.++.++|++.|.+....| ..+...+..
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 5668889999999999999999999999999887655 88999999999999999999999999999876 457789999
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh
Q 037620 297 LKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
|.+.|.+.++.++|.+.+++-.+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999887665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-12 Score=99.59 Aligned_cols=198 Identities=10% Similarity=0.004 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444455555555555555555544433 3334444455555555555555555555554442 22334444455555
Q ss_pred HhhCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGI-GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
...|++++|...++....... +.....+..+...+...|++++|...+.+.... .+.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 555555555555555544211 112234444555566666666666666665541 12234455556666666666666
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|...+++..+.. ..+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666665542 2244445555556666666666666665554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-11 Score=102.85 Aligned_cols=295 Identities=16% Similarity=0.131 Sum_probs=212.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc---
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS--- 92 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 92 (330)
-...+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999988665 344445667778899999999999999999999985 2244445555555422
Q ss_pred --cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 93 --AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS-EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 93 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
..+.+...++|+++...- |...+...+.-.+.....+. .+..++..+...|+| .+|+.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 235788889999887664 54444444443344333343 455666777888864 3566666667655555555
Q ss_pred HHHHHHHHHc----C----------CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKC----G----------IGPNT--RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 170 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
..++...... + -+|+. +++.-+.+.|...|++++|+.++++.... .+-.+..|..-.+.+-.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 6666655432 1 12343 35566788889999999999999998873 22235678888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH--------HHHHHHHHhcC
Q 037620 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF--------SNLKQALRDEG 305 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g 305 (330)
.|++.+|.+.++...+.+.. |...-+..+..+.+.|+.++|.+++......+..|....+ .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998776 7777777888999999999999999988766544433222 34567899999
Q ss_pred chHHHHHHHHHHHhc
Q 037620 306 MEETAVVLAQKIDKL 320 (330)
Q Consensus 306 ~~~~a~~~~~~~~~~ 320 (330)
++..|.+.+..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-11 Score=98.16 Aligned_cols=264 Identities=10% Similarity=0.065 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
.+|+.-.+.|.+.+.++-|..+|...++. .+.+...|......--..|..+....+|+++... .+-....|......+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 34555666666666666677777666663 3445556666655555566666666677666665 233445555555566
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
-..|+...|..++....+.+ +-+...|...+..-..+.+++.|..+|.+.... .|+...|.--+..-.-.+..++|.
T Consensus 595 w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 66677777777777766665 446666666666667777777777777666654 455566655555555566667777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+ ..+-....|..|...-.+.|.+-+|..++++..-.
T Consensus 672 rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 776666554 222234455555555566666666665555443 22233334445555445555555555555555554
Q ss_pred CCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
++. +...|-..|+.-.+.|+.+.|..++.+.+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444 45555555555555555555555544443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-13 Score=101.62 Aligned_cols=229 Identities=9% Similarity=0.015 Sum_probs=178.2
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (330)
+.+..+|.+.|-+.+|.+.|+..++. .|-+.||..|-..|.+..+++.|+.++.+-.+.- |-++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888888888888888888776 5667777778888888888888888888877663 44555555667788888
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
++.++|.++++...+.. +.++.....+...|.-.++++.|+..++++.+.|+. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888887763 456667777777788888888888888888888875 7778888888888888888888888
Q ss_pred HHhhcCCCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 209 KRMSRKPGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 209 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.+... .-..|+ ..+|..+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 87765 222232 346777777778888888888888888776655 667788888777888888888888887764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-11 Score=104.78 Aligned_cols=270 Identities=13% Similarity=0.107 Sum_probs=213.8
Q ss_pred HHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 50 ILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
.........|+.++|.+++.+.++.. +.+...|..|...|-..|+.+++...+-.....+ |.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33344445599999999999999985 5588999999999999999999998886666555 778899999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHHcCCHHHHH
Q 037620 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR----TYDIVLHHLIKAGRTEEAY 205 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~ 205 (330)
+++.|.-+|.++++.. +++...+---...|-+.|+...|...+.++.....+.|.. ....+++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999985 5566666666788999999999999999998864432322 3334566777788889999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---------------------------CCc----
Q 037620 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG---------------------------VLP---- 254 (330)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~---- 254 (330)
+.++......+...+...++.++..+.+...++.|......+.... ..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 9998877655556666677888888888888888877776655410 000
Q ss_pred --------------------------------cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 255 --------------------------------VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302 (330)
Q Consensus 255 --------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (330)
+...|..+..++...|++.+|+.++..+.......+...|..+.++|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 134466677888889999999999999987655566778999999999
Q ss_pred hcCchHHHHHHHHHHHhcCC
Q 037620 303 DEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~ 322 (330)
..|.+++|.+.++++....+
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCC
Confidence 99999999999999887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-11 Score=98.78 Aligned_cols=219 Identities=12% Similarity=0.113 Sum_probs=161.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (330)
|+.-.|..-|+..+... +.+...|-.+..+|....+.++..+.|....+.+ +-++.+|..-.+.+.-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 44555555566555554 3333346667778888888888888888888775 457778888888888888899999888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
++.+.... .+...|..+..+..+.++++++...|++..+ ..+-.+..|+.....+...++++.|.+.|+..++....
T Consensus 418 ~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88877532 2556777777777888899999999999887 45556678888889999999999999999988765322
Q ss_pred -----cc--HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 254 -----PV--MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 254 -----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.+ +.+--.++..- -.+++..|..++++..+.+ +-....+..|...-.+.|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 12222222222 3488999999999998765 23456788899999999999999999987643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-12 Score=100.09 Aligned_cols=280 Identities=13% Similarity=0.120 Sum_probs=208.5
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHH--HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTIL--LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
..+.++|+++.|+++++-+.+.....-...-+.| +..+....++..|.+.-+...... .-+......-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3477899999999999888775433222223322 222222346777777776666442 3344444444445556799
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
+++|.+.|++....+..-....|+ +.-.+-..|++++|+++|-++... +..+..+...+...|....+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998766333334444 344677889999999999887654 234677788888999999999999999987
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (330)
.... ++.|+..++.|...|-+.|+-..|++.+-.--+ -.+-+..+...|...|....-+++++..|++..- +.|+
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 7654 566888999999999999999999988765543 3556788889999999999999999999998643 5789
Q ss_pred HHHHHHHHH-HHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 037620 256 MHMYSTLIN-SLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306 (330)
Q Consensus 256 ~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (330)
..-|..++. ++.+.|++.+|..+++.... .++.+...+..|++.+...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 999998876 55678999999999999865 456788888888888877663
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=115.88 Aligned_cols=250 Identities=12% Similarity=0.145 Sum_probs=163.1
Q ss_pred CCCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh
Q 037620 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 1 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
|+..|+.|+..+|.++|..|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 356799999999999999999999999998 9999998888889999999999999999887776 6788
Q ss_pred HHHHHHHHHHhccCcHHH---HHHHHHHH----HhcCCCCChHHHHHH--------------HHHHhccCcHHHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDE---AVELFREM----EATNCKPSPHIFCTL--------------INGLGSEKRLSEALQFFG 139 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~l--------------~~~~~~~~~~~~a~~~~~ 139 (330)
.+|..|+.+|...||... ..+.+..+ ...|+-.....+-.. +....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998654 22222222 122221111111111 112222344444444444
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC
Q 037620 140 QSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP 219 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (330)
.+...... . .+..+++-+... ..-..++........-.|++.+|..++.+-..+|+.+.|..++..|.+ .|.+.
T Consensus 164 ~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke-~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE-KGFPI 237 (1088)
T ss_pred hCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-cCCCc
Confidence 33322111 0 111112222222 222223332222211147888888888888888888888888888887 67777
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77766666643 77777788888888888888888888877777766443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-11 Score=99.08 Aligned_cols=304 Identities=11% Similarity=0.038 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...|......=-..|..+....+|.+.... +|-....|-....-+-..|+...|..++....+... -+...|...+..
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKl 627 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKL 627 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 334444444444445555555555555542 233333444444444445555555555555554432 244455555555
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
.....++++|..+|.+.... .|+..+|..-+..-.-.++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|
T Consensus 628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHH
Confidence 55555555555555554443 244444444444444445555555555555444 222233444444555555555555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
...|..-.+. ++-.+..|..+...--+.|++-.|..++++..- ..+-+...|...|++-.+.|..+.|..+..+..+
T Consensus 705 R~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 705 REAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5544443332 222333444444444444455555555554433 2233444455555555555555555544443332
Q ss_pred CC-----------------------------CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 250 RG-----------------------------VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300 (330)
Q Consensus 250 ~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (330)
.- ..-|+.+...+...+.....++.|.+.|.+.++.+ +.+..+|..+...
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykf 860 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKF 860 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHH
Confidence 21 12255667777788888889999999999999766 4567888888899
Q ss_pred HHhcCchHHHHHHHHHHHhcCC
Q 037620 301 LRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+.|.-++-.+++.......+
T Consensus 861 el~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccCC
Confidence 9999988888888877665443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-11 Score=105.96 Aligned_cols=308 Identities=9% Similarity=0.032 Sum_probs=201.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHh----hCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC---CCCCCh-
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMK----KRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD---GFEPDV- 80 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~- 80 (330)
|...|-.+...+-. ++...++.+|.... ..+-++.+...|.+...+...|++.+|...|...... ...++.
T Consensus 413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 44455555544433 33333355554433 2344456667777777777777777777777776654 112222
Q ss_pred -----HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 81 -----VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 81 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
.+-..+..+.-..++.+.|.+.|..+.... |.-...|..++.+....++..+|...+....... ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 222334555555667777777777777664 4445555555544445566777777777776653 446666666
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGI-GPNTRTYDIVLHHLIK------------AGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
+...+.+...+..|..-|+.+.+.-. .+|+.+..+|...|.. .+..++|+++|.++.+ ..+-|..
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~y 647 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMY 647 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhh
Confidence 77677777777777776666554322 2455555556554432 2456778888888776 3445666
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI-GIRPPGQLFSNLKQAL 301 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 301 (330)
.-+-+.-.++..|++..|..+|....+.... ...+|-.+..+|...|++..|+++|+..... ....+......|.+++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 6677777788889999999999888876442 4457888888999999999999999877653 4455677888888999
Q ss_pred HhcCchHHHHHHHHHHHhcCC
Q 037620 302 RDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.|.+.+|.+.+.......+
T Consensus 727 y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCC
Confidence 999999988888877665544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=99.14 Aligned_cols=234 Identities=10% Similarity=0.060 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
..-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-..|.+..++..|+.++.+-.+. .+-++....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467889999999999999999988775 578889999999999999999999999998876 333444445577888
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
-..++.++|.++|+...+.. +.+......+...|.-.++++.|+.++.++.+.|+. ++..|..+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88899999999999999886 677888888888899999999999999999999964 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 171 RMMDEMRKCGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 171 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
..|++....--.|+ ...|-.+-......|++..|.+.|+-... ....+...++.|.-.-.+.|++++|..++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99998876433333 45788888888899999999999998875 344567789999988899999999999999887
Q ss_pred hCC
Q 037620 249 ARG 251 (330)
Q Consensus 249 ~~~ 251 (330)
...
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=97.52 Aligned_cols=260 Identities=8% Similarity=0.028 Sum_probs=193.2
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM--INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+.+.|+++.|++++.-+.+..-+.-...-+.| +..+....++..|.+.-+.....+ .-++.....-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 56788888898888887765322222222222 222223446777777777766554 445555555555667789999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+|.+.+.+....... .....-.+.-.+-..|+.++|++.|-++... +..+..++..+...|-...++..|++++.+..
T Consensus 508 ka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999999877532 2333333445677889999999999887653 23467788888899999999999999998875
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
. -++.|+.++..|...|-+.|+-.+|.+.+-+--.. ++.|..+...|...|....-+++++.+|++.. -+.|+..
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH
Confidence 4 46667888999999999999999999887654333 45588899999999999999999999999886 4689999
Q ss_pred hHHHHHHH-HHhcCchHHHHHHHHHHHhcCC
Q 037620 293 LFSNLKQA-LRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 293 ~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
-|..++.. +.+.|++.+|..+++++..+-+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 99987765 5689999999999999876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=96.86 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=190.7
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc---
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS--- 127 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 127 (330)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345567899999999999886554 44345666778899999999999999999999998 5666666666665522
Q ss_pred --cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 128 --EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI-NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 128 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
..+.+...++++++... -|.......+.-.+.....+ ..+..++..+...|+++ +|..+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 23567778888888766 24444444333333332233 34556667777888653 566666666655555555
Q ss_pred HHHHHHhhcC----C---------CCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc
Q 037620 205 YSVFKRMSRK----P---------GTEPTVS--TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269 (330)
Q Consensus 205 ~~~~~~~~~~----~---------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (330)
..++...... . .-+|+.. ++.-+.+.|-..|++++|++++++.+++.+. .+..|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555554321 0 1234442 4466678889999999999999999998544 467888889999999
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 270 DKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
|++.+|...++.....+. -|...-+..+..+.++|++++|.+++..+.+.+..|
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999999999998763 466677778888999999999999999998777644
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-10 Score=97.41 Aligned_cols=306 Identities=12% Similarity=0.045 Sum_probs=218.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh--HH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF--DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV--VS 82 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 82 (330)
+-|+.+.+.|...|.-.|+++.++.+...+..... +.-..+|-.+.++|...|++++|...|.+..+.. ++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 34677888899999999999999999888877421 1224568888899999999999999998887763 333 34
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC----cHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK----RLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+.-+...+...|+.+.+...|+.+.... |.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4557788999999999999999998875 677788888887777765 4567777777776663 456777777777
Q ss_pred HHHhhCChhHHHHHHHHH----HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC------CchHHHHH
Q 037620 159 AYCWSMRINDAYRMMDEM----RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG--TE------PTVSTYEI 226 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~------~~~~~~~~ 226 (330)
.+.... +..++..+... ...+-.+.+...|.+...+...|++++|...|.....+.. .. ++..+-..
T Consensus 423 l~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 665544 33336666544 3445556778899999999999999999999988765311 12 22333445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (330)
+.......++.+.|.+.|..+.+..+. -...|.-++......+...+|..+++..++.+ ..++..+..+...+.+..+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 677778888999999999999876432 23344444433334577889999999988744 4566666667777887777
Q ss_pred hHHHHHHHHHHHh
Q 037620 307 EETAVVLAQKIDK 319 (330)
Q Consensus 307 ~~~a~~~~~~~~~ 319 (330)
+..|.+-++.+.+
T Consensus 580 ~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 580 WKPAKKKFETILK 592 (1018)
T ss_pred hcccccHHHHHHh
Confidence 7777775554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-10 Score=83.99 Aligned_cols=193 Identities=13% Similarity=0.003 Sum_probs=92.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR 200 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (330)
|.-.|...|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+.|++...... -+..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 3344455555555555555554443 22334444444455555555555555555444321 133344444444455555
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQ 280 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 280 (330)
+++|...|++....+.......+|..+.-+..+.|+.+.|...|++..+.... .+.+...+.......|++..|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 55555555555444433333445555555555555555555555555544332 23344444555555555555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 281 EMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+....+ .++...+...++.-.+.|+.+.+.++=..+
T Consensus 198 ~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 198 RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 554433 245555555555555555555544444333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=77.57 Aligned_cols=49 Identities=37% Similarity=0.683 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHh
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWG 56 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 56 (330)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5555566666666666666666666666655555666666666555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=96.90 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C-CCCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C--
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEAT-----N-CKPSP-HIFCTLINGLGSEKRLSEALQFFGQSKKR-----G-- 145 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 145 (330)
..+...+...|...|+++.|+.+++...+. | ..|.. ...+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666889999999999999999987764 1 12222 33344778899999999999999988653 2
Q ss_pred CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH---c--CC-CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--
Q 037620 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK---C--GI-GPN-TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG-- 216 (330)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 216 (330)
.+.-..+++.|...|.+.|++++|...+++..+ . +. .|. ...++.+...+...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122345677888899999999999888887643 1 11 122 23466677788889999999998887654111
Q ss_pred CCC----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC--Cc-cHHHHHHHHHHHhccCChhHHHHHHHHHHh-
Q 037620 217 TEP----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GV--LP-VMHMYSTLINSLCHEDKLDDACKYFQEMLD- 284 (330)
Q Consensus 217 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 284 (330)
..+ -..+++.|...|...|++.+|+++++.++.. +- .+ ....++.+...|.+.+++.+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2357899999999999999999999987653 11 11 234678888999999999999999887653
Q ss_pred ---cCC--CCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 285 ---IGI--RPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 285 ---~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.|. +....+|..|...|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 2234578899999999999999999998876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-10 Score=90.68 Aligned_cols=227 Identities=12% Similarity=-0.028 Sum_probs=154.9
Q ss_pred ccChHHHHHHHHHHHhCC-CCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 58 QKNLLSMNEVYREMKDDG-FEP--DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
.+..+.++.-+.+++... ..| ....|..+...+...|+.++|...|++..+.. |.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777542 122 23557777888889999999999999988876 67788999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (330)
...|++..+.. +.+..++..+..++...|++++|...++...+.. |+..........+...+++++|...+.+...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 99999998874 3356677888888888999999999999988754 3332222222233456789999999976553
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC--C-ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR---GV--L-PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR 288 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (330)
...|+...+ .+.. ...|+...+ ..+..+.+. .+ . .....|..+...+.+.|++++|+..|++..+.+ +
T Consensus 194 -~~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 -KLDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred -hCCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 223332222 2222 334555443 244444321 11 1 123578888999999999999999999998765 3
Q ss_pred CChhhHH
Q 037620 289 PPGQLFS 295 (330)
Q Consensus 289 ~~~~~~~ 295 (330)
|+..-+.
T Consensus 268 ~~~~e~~ 274 (296)
T PRK11189 268 YNFVEHR 274 (296)
T ss_pred chHHHHH
Confidence 4444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-10 Score=89.36 Aligned_cols=222 Identities=10% Similarity=0.002 Sum_probs=161.3
Q ss_pred cCChHHHHHHHHHHhhCC-CCCC--hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 23 SRHVERAQEVFDKMKKRR-FDPD--IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
.+..+.++.-+..++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345567788888877632 2222 3567788888999999999999999999885 34788999999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...|++..+.. |.+..++..+..++...|++++|.+.++...+.. |+..........+...+++++|...+......
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999876 6677888999999999999999999999998874 43332222233345567899999999776543
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
. .++...+ . ......|+...+ ..+..+.+.....+ ....|..+...+...|++++|...|++..+.++.
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2 3332222 2 233345665544 34444443111111 2357889999999999999999999999987644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-09 Score=85.84 Aligned_cols=309 Identities=12% Similarity=0.055 Sum_probs=211.5
Q ss_pred CCCChhhHHHHHHHHH--ccCChHHHHHHHHHHhh-CCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHH
Q 037620 6 LKQELPDFNRLIDTLC--KSRHVERAQEVFDKMKK-RRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS 82 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (330)
++|+..+...-+.+++ ..++...|...+-.+.. ..++-|+.....+...+...|+.++|+..|++....+ +-+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhh
Confidence 3444444444444433 33444455554444333 2356678888889999999999999999999887653 113333
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW 162 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (330)
.......+.+.|+.+....+...+.... .-+...|..-+......++++.|+.+-++.++.. +.+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3344455667788888888777776543 3444455555566667788899999888888774 3455566666677788
Q ss_pred hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH-H-HHHhCCCHHHH
Q 037620 163 SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVV-R-MFCYNAQVDMA 240 (330)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~a 240 (330)
.+++++|.-.|+..+... +-+...|..|+.+|...|.+.+|...-....+ -.+.+..+.+.+. . .+....--++|
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHH
Confidence 899999998888877642 23678899999999999999998877766554 2333455544442 1 22233345678
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
.++++......+. -....+.+...+...|..++++.++++.+.. .||......|.+.+...+.+.+|...+......
T Consensus 424 Kkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888876665433 3456677788888899999999999988753 688888888888888888888888888877665
Q ss_pred CCC
Q 037620 321 RKT 323 (330)
Q Consensus 321 ~~~ 323 (330)
++.
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=76.20 Aligned_cols=49 Identities=33% Similarity=0.754 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=103.85 Aligned_cols=257 Identities=12% Similarity=0.160 Sum_probs=177.3
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 31 EVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
.++-.+...|+.|+-.||..+|.-|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556667799999999999999999999999998 9999988888888999999999999998877765
Q ss_pred CCCChHHHHHHHHHHhccCcHHH---HHHHHHHHH----hcCCCCChhhH--------------HHHHHHHHhhCChhHH
Q 037620 111 CKPSPHIFCTLINGLGSEKRLSE---ALQFFGQSK----KRGFEPEAPTY--------------NAVVGAYCWSMRINDA 169 (330)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a 169 (330)
.|.+.+|..|..+|...||... +.+.+..+. ..|+-.....+ ...+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6888999999999999998654 333222221 22221111111 1112222233334444
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR-TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
.+++..+...... . ++..+++-+..... +++-....+... + .|+..+|..++.+...+|+.+.|..++.+|+
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~---e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLV---E-APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhh---c-CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 4444333221110 1 11112333333222 333333333322 2 5889999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 309 (330)
+.|++.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+.++|....
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 99998888877777755 78888899999999999999999999988888887665433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-10 Score=92.45 Aligned_cols=273 Identities=9% Similarity=-0.011 Sum_probs=216.6
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+......-..-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-.-+=.++.+.- |..+.+|..+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444445566777889999999999999874 6677777777889999999888888878888775 778899999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
-|...|...+|.++|.+....+ +.-...|-.+...|.-.+..++|+..+...-+.- +-..-.+.-+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 9999999999999999987764 2345678899999999999999999988876631 1122223334445778999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC-C-ccHHHHHHHHHHHhccCChhHHHH
Q 037620 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GV-L-PVMHMYSTLINSLCHEDKLDDACK 277 (330)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~ 277 (330)
|..+|..... ..+-|+...+.+.-.....+.+.+|..+|+..... +. . .-..+++.|..+|.+.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999875 34556677777777778889999999999887632 11 1 134568899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 278 YFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+++.+... +.+..++..+.-.|...|+++.|...+.+.....+.
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 999998765 568999999999999999999999999988766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-09 Score=84.33 Aligned_cols=308 Identities=11% Similarity=0.093 Sum_probs=184.4
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-CC-CCChHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-GF-EPDVVSY 83 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~ 83 (330)
..|+..+|++.|..=.+.+.++.|..+++...-. .|++.+|-.....=.+.|....+..+|+...+. |- ..+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4677778888888777778888888888777653 477777777777667777777777777766654 10 1112223
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc-------------------------------------------CCCCChHHHHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEAT-------------------------------------------NCKPSPHIFCT 120 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 120 (330)
.+....-.++..++.|.-+|+-.++. ..+.|-.+|--
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 33333223333444444444333221 01344455555
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChh--hHHHHHHH--------HHhhCChhHHHHHHHHHHHcCCCCcHHHHHH
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAP--TYNAVVGA--------YCWSMRINDAYRMMDEMRKCGIGPNTRTYDI 190 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (330)
.++.-...|+.+...++|++++.. ++|-.. .|.-.|-. -....+++.+.++++...+. ++...+||.-
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaK 405 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAK 405 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHH
Confidence 555555566666666666666654 233111 11111111 11345666666666666652 3334444444
Q ss_pred HHHHH----HHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 191 VLHHL----IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 191 l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
+--.| .+..+...|.+++.... |.-|...++...|..-.+.+.++.+..++++.++.++. |..+|......-
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 33333 35566777777777654 45666777777777777888888888888888887665 667777777777
Q ss_pred hccCChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 267 CHEDKLDDACKYFQEMLDIG-IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
...|+.+.|..+|+-+++.. +......|...+..=...|.+++|..+++.+....
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 77888888888888877532 11123344444554456788888888888776544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-10 Score=96.59 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=173.5
Q ss_pred CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-----C-CCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhc---
Q 037620 40 RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-----G-FEPDVV-SYGIMINAHCSAKRYDEAVELFREMEAT--- 109 (330)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 109 (330)
+.|.-..+...+...|...|+++.|+.++....+. | ..|... ..+.+...|...+++.+|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33434456666888888999999999888887664 2 123333 3344777888889999998888887642
Q ss_pred --C--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----CC-CCCh-hhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 110 --N--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR-----GF-EPEA-PTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 110 --~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
| .+.-..+++.|...|.+.|++++|...+++..+. |. .|.+ ..++.+...+...+++++|..++....+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 2334566777778899999999888887776432 11 2233 2356677778888999999988886543
Q ss_pred c---CCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC----C-CCCc-hHHHHHHHHHHHhCCCHHHHHHHHH
Q 037620 179 C---GIGPN----TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP----G-TEPT-VSTYEIVVRMFCYNAQVDMAMRIWD 245 (330)
Q Consensus 179 ~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 245 (330)
. -+.++ ..+++.|...|...|++++|.++++++.... + ..+. ...++.+...|.+.+++.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 1 12222 4688999999999999999999998876421 1 1222 4467888889999999999999887
Q ss_pred HHHh----CCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 246 EMKA----RGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 246 ~~~~----~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+... .|+. -...+|..|...|.+.|+++.|.++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7543 2322 234678899999999999999999988776
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-10 Score=92.31 Aligned_cols=224 Identities=12% Similarity=0.110 Sum_probs=182.8
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+.-.|+.-.|..-|+..+..... +...|-.+...|....+.++..+.|.+..+.+ |.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44568889999999999987543 33447778889999999999999999999988 88899999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (330)
..=|++.++.. +.+...|-.+..+..+.+++++++..|++.++. ++..+..|+.....+...++++.|.+.|+...+-
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999999885 446667777777777889999999999999887 5557889999999999999999999999988752
Q ss_pred CCC------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 215 PGT------EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 215 ~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
... .+.+.+--.++. +.-.+++..|..++++..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 111111122222 22458999999999999998776 567899999999999999999999998864
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-10 Score=79.86 Aligned_cols=199 Identities=12% Similarity=0.014 Sum_probs=151.6
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
+...|.-.|...|+...|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++..+.. |-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45556677888888888888888888875 3366778888888888888888888888888776 667788888888888
Q ss_pred ccCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAY 205 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (330)
..|++++|.+.|++......- --..+|..+.-+..+.|+++.|...|++..+.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 888888888888887765322 23457777887888888888888888888776432 4556777788888888888888
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
..++..... ..++....-..|+.-...|+.+.+-+.=..+...
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888763 3377777777777777888888777766666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-08 Score=81.70 Aligned_cols=309 Identities=11% Similarity=-0.018 Sum_probs=191.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCh-HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH--
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRR-FDPDI-KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI-- 85 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 85 (330)
+..|..+...+...|+.+.+...+....+.. ..++. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3446666677777788888777777765532 11222 122223345677899999999999998873 334444442
Q ss_pred -HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 86 -MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 86 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
........+....+.+.+... ....+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345555666665542 22223344555667778899999999999999999885 445677888899999999
Q ss_pred ChhHHHHHHHHHHHcCCC-CcH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH-H--HHHHHHHhCCCHH
Q 037620 165 RINDAYRMMDEMRKCGIG-PNT--RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY-E--IVVRMFCYNAQVD 238 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~ 238 (330)
++++|...+++....... ++. ..|..+...+...|++++|..++++........+..... + .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998775321 222 345567888999999999999999986422212222211 1 2333344444433
Q ss_pred HHHHH--H-HHHHhCCC-CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC------C--ChhhHHHHHHHHHhcCc
Q 037620 239 MAMRI--W-DEMKARGV-LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR------P--PGQLFSNLKQALRDEGM 306 (330)
Q Consensus 239 ~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~ 306 (330)
.+.++ + ........ ............++...|+.+.|..+++.+...... . ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 2 11111100 111122235667788999999999999998753222 1 11122222334668999
Q ss_pred hHHHHHHHHHHHhcC
Q 037620 307 EETAVVLAQKIDKLR 321 (330)
Q Consensus 307 ~~~a~~~~~~~~~~~ 321 (330)
+++|.+.+.......
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-09 Score=83.17 Aligned_cols=271 Identities=10% Similarity=0.112 Sum_probs=208.9
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
++-|++....+..++...|+.++|+..|+.....+ +-+..........+.+.|+.+....+...+.... .-+...|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 56678889999999999999999999999987642 1122233333344567889998888888887652 235555665
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
-+.......+++.|+.+-++.++.+ +.+...+-.-.+.+...++.++|.-.|....... +.+...|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 6666677889999999999998876 6667777777788899999999999999998873 4578899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHH-HHHH-HcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHhCCCHHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVL-HHLI-KAGRTEEAYSVFKRMSRKPGTEPT-VSTYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 242 (330)
+.+|..+-+...+. ++.+..+...+. ..+. ...--++|..++++..+ ..|+ ....+.+...+...|..+.+..
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 99998887776553 333555555542 3332 23345788999988765 4444 3456778888999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+++..... .||....+.|.+.+...+.+++|++.|...+..+
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99987764 5788899999999999999999999999988654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-10 Score=87.73 Aligned_cols=251 Identities=12% Similarity=0.093 Sum_probs=167.5
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886665 322221223445566778888888877544 4444433 677777766666665545555
Q ss_pred HHHHHHHHHHhcCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 98 EAVELFREMEATNCK-PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
.++.-+++....... .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666555554433323 23333334446678889999999888643 35667777889999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 177 RKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+..+.+.
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 8753 33455556665543 2368999999999887 3557788888999999999999999999999887665
Q ss_pred CccHHHHHHHHHHHhccCCh-hHHHHHHHHHHhc
Q 037620 253 LPVMHMYSTLINSLCHEDKL-DDACKYFQEMLDI 285 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 285 (330)
. ++.+...++.+....|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5 677777788877888887 5677788887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-10 Score=88.96 Aligned_cols=253 Identities=13% Similarity=0.089 Sum_probs=171.0
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788988887666 333322223445556778898999877544 4444444 677777776766665545566
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 133 EALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.+..-+.+.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665554443232 3333333345567789999999888643 35677778899999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 037620 212 SRKPGTEPTVSTYEIVVRMFCY----NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 287 (330)
.+ ...| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 86 2333 344455555543 34699999999998765 55688899999999999999999999999998765
Q ss_pred CCChhhHHHHHHHHHhcCch-HHHHHHHHHHHhcCC
Q 037620 288 RPPGQLFSNLKQALRDEGME-ETAVVLAQKIDKLRK 322 (330)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 322 (330)
+-++.++..++-+....|+. +.+.+++.++....+
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 44677888888888888887 677888888876554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-08 Score=77.99 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
..|-..+.+=.++..+..|..++++.... +|.-...|...+.+=-..|++..|.++|+...+- .|+...|.+.+..-
T Consensus 108 tLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 108 TLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFE 184 (677)
T ss_pred hHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Confidence 34444555555556666666666665552 2222234444444445567777777777777664 67888888888888
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhhCChhH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF--EPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
.+.+.++.|..+|+...-. .|+...|-.....=.+.|+...+..+|+.+.+.-- ..+...+.++...-..+..++.
T Consensus 185 lRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred HHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887654 37777777777777778888888888877765410 0122334444444445666777
Q ss_pred HHHHHHHHHH
Q 037620 169 AYRMMDEMRK 178 (330)
Q Consensus 169 a~~~~~~~~~ 178 (330)
|.-+|.-..+
T Consensus 263 ar~iykyAld 272 (677)
T KOG1915|consen 263 ARFIYKYALD 272 (677)
T ss_pred HHHHHHHHHH
Confidence 7777765543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-08 Score=81.17 Aligned_cols=131 Identities=16% Similarity=0.082 Sum_probs=98.5
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
..+.+.++.++|...+.+... ..+.....|......+...|.+.+|.+.|......++. ++....++..++.+.|+.
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCc
Confidence 344455555666655555543 23334455566666677788888888888887776544 566788899999999988
Q ss_pred hHHHH--HHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCCc
Q 037620 273 DDACK--YFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLVD 327 (330)
Q Consensus 273 ~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 327 (330)
.-|.. ++..++..+ +.+...|..+...+.+.|+.++|...|+.......+.++.
T Consensus 735 ~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred chHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 88877 999999877 5688999999999999999999999999888777665554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-07 Score=77.84 Aligned_cols=275 Identities=8% Similarity=-0.077 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCC-CCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHH--
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGF-EPDV-VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT-- 120 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 120 (330)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+++++..+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 45566667777777888887777776655421 1222 122223445677899999999999998875 555555542
Q ss_pred -HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 037620 121 -LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG 199 (330)
Q Consensus 121 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (330)
........+....+.+.+...... .+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345555555555542111 12223344456678889999999999999999875 335677888899999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CccHHHH-H--HHHHHHhccCChh
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTV--STYEIVVRMFCYNAQVDMAMRIWDEMKARGV-LPVMHMY-S--TLINSLCHEDKLD 273 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~ 273 (330)
++++|...+++........|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999987632222332 3455788889999999999999999865432 1122111 1 2333334445433
Q ss_pred HHHHH--HHHHHhcCCC--CChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 274 DACKY--FQEMLDIGIR--PPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 274 ~a~~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.++ +......... ...........++...|+.++|..+++.+.....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 33333 2111111111 1112222466678889999999999998876443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-08 Score=76.35 Aligned_cols=310 Identities=15% Similarity=0.134 Sum_probs=186.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh
Q 037620 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 1 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
|-..|+......+.+++..+.+..++++|++++....++. +.+......+..+|....++..|-..++++-.. .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 4456666666678899999999999999999998887753 447788889999999999999999999999876 4554
Q ss_pred HHHHH-HHHHHhccCcHHHHHHHHHHHHhcC-----------------------------C--CCChHHHHHHHHHHhcc
Q 037620 81 VSYGI-MINAHCSAKRYDEAVELFREMEATN-----------------------------C--KPSPHIFCTLINGLGSE 128 (330)
Q Consensus 81 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~--~~~~~~~~~l~~~~~~~ 128 (330)
.-|.. -...+.+.+.+..|+++...|.... . ..+..+.+...-...+.
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence 44432 2345556667777777666553310 0 01223333333344567
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH-------------H--------H
Q 037620 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT-------------R--------T 187 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~--------~ 187 (330)
|+++.|.+-|+...+-+--.....|+.-+ +..+.+++..|++...+++++|++..+ . .
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 77777777777766543333344565444 344567777788777777777764211 0 1
Q ss_pred HHHHHH-------HHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHH
Q 037620 188 YDIVLH-------HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYS 260 (330)
Q Consensus 188 ~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (330)
-+.++. .+.+.++++.|.+.+..|..+.....|+.|...+.-.- -.+++....+-+.-+.+.++- ...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHH
Confidence 122222 23466777777777777766555566666665544221 223444444444555555443 356777
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh-cCchHHHHHHHHHH
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDIGIR-PPGQLFSNLKQALRD-EGMEETAVVLAQKI 317 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 317 (330)
.++-.||+..-++.|-.++.+-...... .+...|. ++.++.. .-..+++.+-++.+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 7777777777777777766543221111 1222222 3444443 33566666555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-07 Score=76.76 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=65.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPV-MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
..++..+-..|+++.|...++..+++ .|+ +..|..-.+.+.+.|++++|..++++..+.+ .+|...-..-+.-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 34566677778888888888887765 333 3345455577778888888888888887655 3455444455566677
Q ss_pred cCchHHHHHHHHHHHhcCC
Q 037620 304 EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~ 322 (330)
+++.++|.+++..+.+.|.
T Consensus 452 An~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccccHHHHHHHHHhhhccc
Confidence 7888888888877776664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-08 Score=87.43 Aligned_cols=244 Identities=11% Similarity=0.145 Sum_probs=186.5
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CCC---CChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 68 YREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT-NCK---PSPHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
|+++.... +-+...|-..+......++.++|.++.++.+.. ++. .....|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444432 446778889999999999999999999998753 211 1234677777777777888889999999988
Q ss_pred cCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH
Q 037620 144 RGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223 (330)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (330)
.. ..-..|..|...|.+.+.+++|.++++.|.+. .......|...+..+.+.++-++|..++.+..+...-.-....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 73 23457889999999999999999999999886 3357789999999999999999999999998873222224555
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG--QLFSNLKQAL 301 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 301 (330)
....+..-.+.|+.+++..+|+......++ -...|+.+++.-.++|+.+.+..+|++..+.++.|-. ..|...+..=
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 566677778999999999999999877555 5678999999999999999999999999998877653 2444444443
Q ss_pred HhcCchHHHHHHHHH
Q 037620 302 RDEGMEETAVVLAQK 316 (330)
Q Consensus 302 ~~~g~~~~a~~~~~~ 316 (330)
...|+-+.++.+=.+
T Consensus 1682 k~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HhcCchhhHHHHHHH
Confidence 455665554444333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-07 Score=76.60 Aligned_cols=309 Identities=15% Similarity=0.145 Sum_probs=206.4
Q ss_pred CCCChhh-HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 6 LKQELPD-FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 6 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
++|-... |..++.+ ...+++...+.+.+.+++ +.+-...+.....-.+...|+.++|........+.++. +.++|.
T Consensus 3 l~~KE~~lF~~~lk~-yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwH 79 (700)
T KOG1156|consen 3 LSPKENALFRRALKC-YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWH 79 (700)
T ss_pred CChHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHH
Confidence 3444444 4444544 467788888888888887 44445556655555566789999999999988887544 889999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
.+.-.+....++++|++.|......+ +.|...+.-+.-.-++.++++..........+.. +.....|..+..++.-.|
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 99888888999999999999999887 7788888888878888999999888888887763 345667888888888899
Q ss_pred ChhHHHHHHHHHHHcC-CCCcHHHHHHHH------HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 165 RINDAYRMMDEMRKCG-IGPNTRTYDIVL------HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
+...|..+++...+.. -.|+...+.-.. ......|..+.|.+.+..... .+......-..-...+.+.+++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhH
Confidence 9999999999988754 245555544332 344567888888887776543 1222222233445667889999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHH-HHHHHHhccCChhHHH-HHHHHHHhcCCCCChhhHHHHHHHHH-hcCchHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVLPVMHMYS-TLINSLCHEDKLDDAC-KYFQEMLDIGIRPPGQLFSNLKQALR-DEGMEETAVVLA 314 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 314 (330)
++|..++..++..+ ||-..|. .+..++.+-.+.-+++ .+|....+. .|....-..+--... ...-.+..-+++
T Consensus 236 EeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 236 EEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHH
Confidence 99999999999874 4444444 4444554333334444 555555432 222222222211111 122233444555
Q ss_pred HHHHhcCCCCC
Q 037620 315 QKIDKLRKTPL 325 (330)
Q Consensus 315 ~~~~~~~~~~~ 325 (330)
......|.++.
T Consensus 312 ~~~l~Kg~p~v 322 (700)
T KOG1156|consen 312 RPLLSKGVPSV 322 (700)
T ss_pred HHHhhcCCCch
Confidence 66666666554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-08 Score=85.28 Aligned_cols=235 Identities=10% Similarity=0.038 Sum_probs=111.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
.+...+..|+..+...+++++|.++.+...+.. |-....|-.+...+.+.++.+.+..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 356678888888888888888888888666631 22333444444456666665554444 2222
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
......++..+..+...+... .-+..++..+..+|-+.|+.+++..+++++.+.. +.++.+.|.+...|... +++
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 122222222222222222221 1222344444555555555555555555555443 33444444454444444 555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHL-----IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 242 (330)
+|..++.+....-+ +..-|+.+.... ....+.+.-..+.+.+....+..--..++..+-..|...++++++..
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 55444444333200 000000000000 00111222223333333322222233445555666777777777777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHh
Q 037620 243 IWDEMKARGVLPVMHMYSTLINSLC 267 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (330)
+++.+.+.... |.....-++.+|.
T Consensus 245 iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCc-chhhHHHHHHHHH
Confidence 77777776555 5556666666665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-08 Score=74.00 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH-HHHHHhccCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST-LINSLCHEDKLDDACKYFQEMLDIGIRPPG-QLFSNLKQALRD 303 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 303 (330)
.+.++++..|.+.+|+++|-.+....++ |..+|.. |.++|.+.+.++.|+.++-++-. +.+. .....+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 4667778889999999999888766666 6666665 55799999999999888766532 2222 334445667889
Q ss_pred cCchHHHHHHHHHHHhcCCCCCCcCC
Q 037620 304 EGMEETAVVLAQKIDKLRKTPLVDRG 329 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~~~~~~ 329 (330)
.+.+=-|.+.|+.+...+++|..+.|
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred HHHHHHHHHhhhHHHccCCCccccCC
Confidence 99999999999999999999977665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-08 Score=80.79 Aligned_cols=253 Identities=9% Similarity=0.035 Sum_probs=183.9
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++..+.. |.+..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567888999999999998885 3478899999999999999999999999999887 7788888999999999999999
Q ss_pred HHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhhCChhHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 134 ALQFFGQSKKRGFEP--------EAPTYNAVVGAYCWSMRINDAYRMMDEM-RKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 134 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
|+..++..+....+- +...-.. ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886553110 0000000 1111122233344444444 4455446777888888888899999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 205 YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.+.|+.... --+-|..+||-|...++...+.++|+.-|.+.++..+. -+.+...|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999986 23446778999999999999999999999999887544 234555677789999999999998877653
Q ss_pred ---c------CCCCChhhHHHHHHHHHhcCchHHHHHH
Q 037620 285 ---I------GIRPPGQLFSNLKQALRDEGMEETAVVL 313 (330)
Q Consensus 285 ---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (330)
. +..++...|..|-.++.-.++.+-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122345677776677777776644433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=83.28 Aligned_cols=227 Identities=12% Similarity=0.093 Sum_probs=176.4
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.-+.+.|++.+|.-.|+.....+ |-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888999999999998887 7889999999999999999999999999999985 557778888889999999999
Q ss_pred HHHHHHHHHHHcCCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 168 DAYRMMDEMRKCGIGP--------NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
.|...++..+...++- +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999999886643110 0000000 11111222344455555555445656777788888888999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-GQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|.+.|+..+...+. |...||.|...++...+.++|+..|++.++. .|+ .+....|.-+|...|.+++|.+.|-...
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999987655 7889999999999999999999999999965 565 4566678889999999999998887665
Q ss_pred hcC
Q 037620 319 KLR 321 (330)
Q Consensus 319 ~~~ 321 (330)
.+.
T Consensus 526 ~mq 528 (579)
T KOG1125|consen 526 SMQ 528 (579)
T ss_pred Hhh
Confidence 443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-07 Score=71.59 Aligned_cols=214 Identities=7% Similarity=0.027 Sum_probs=124.7
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK-RYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
+..+-..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+....++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3444445556677788888888877763 224556665555555556 5677888887777765 556666766655555
Q ss_pred ccCcH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc---CCH
Q 037620 127 SEKRL--SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA---GRT 201 (330)
Q Consensus 127 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 201 (330)
+.|+. +++..+++++.+.. +-+..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 56677777777664 346667777777777777777777777777776543 455565555444443 222
Q ss_pred ----HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 037620 202 ----EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN----AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268 (330)
Q Consensus 202 ----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (330)
++......+... ..+-+...|+.+...+... +...+|...+.+..+.++. +......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 344444444433 1233444555555555442 2334455555555544333 44455555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-07 Score=71.89 Aligned_cols=215 Identities=8% Similarity=0.032 Sum_probs=144.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc-ChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK-NLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
++..+-..+...++.++|+.+.+.+++.. |-+..+|+.--.++...| ++++++..++++.....+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 34455555667788889999998888742 334556666656666666 578889988888877533 666777655555
Q ss_pred hccCcH--HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh---CC
Q 037620 91 CSAKRY--DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS---MR 165 (330)
Q Consensus 91 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 165 (330)
.+.|+. ++++.+++++.+.+ +-+..+|+....++...|+++++++.++++++.+ +.+...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 555553 67788888888776 6788888888888888888999999999988876 34666777666555544 22
Q ss_pred h----hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 166 I----NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA----GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 166 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
. ++......+++... +-+...|+-+...+... +...+|...+.+... ..+.+...+..|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 2 35666666666653 33667777777777663 334557777766554 123345556666666654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-06 Score=71.33 Aligned_cols=101 Identities=9% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC----------CC
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN---TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT----------EP 219 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~ 219 (330)
|..+.+.|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+.+.+.....+.. ++
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 45555556666667777777766655432211 233444444445566666666666665431111 11
Q ss_pred ------chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 220 ------TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 220 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
+...|...+..-...|-++....+|+++.+..+.
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 2234455555555667777777777777665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-06 Score=66.75 Aligned_cols=297 Identities=11% Similarity=0.076 Sum_probs=179.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHH---HHHHhhccChHHHHHHHHHHHhCCCCCChHHHH-HHHHH
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTIL---LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG-IMINA 89 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~ 89 (330)
--+-..+...|++.+|+.-|....+. |+..|.++ ...|...|+...|+.=+...++. +||-..-. .-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 34455566667777777777777662 34444444 34566677777777777777665 55533221 12345
Q ss_pred HhccCcHHHHHHHHHHHHhcCCC--CChHHH------------HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCK--PSPHIF------------CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
+.+.|.+++|..-|+.++..... .....+ ...+..+...|+...|+..+..+.+.. +-+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 66778888888888877765411 011111 122345566777777777777777763 456667777
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH----HHHH----
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST----YEIV---- 227 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---- 227 (330)
-..+|...|.+..|+.-++...+..- .+..++-.+-..+...|+.+.++...++..+ +.||... |..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHH
Confidence 77778888888877776666655432 2445555566666777777777777776654 3444321 1111
Q ss_pred -----HHHHHhCCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 228 -----VRMFCYNAQVDMAMRIWDEMKARGVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 228 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
+......++|.++.+-.+...+..+... ...+..+-.++...+++.+|+....+.++.. +.|..++..-..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 1223445667777776666665543311 2234445566667777888888777777543 233677777777
Q ss_pred HHHhcCchHHHHHHHHHHHhcCC
Q 037620 300 ALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+|.-...++.|+.-+++..+.+.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCc
Confidence 77777777777777777766554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-07 Score=78.51 Aligned_cols=240 Identities=13% Similarity=0.092 Sum_probs=182.6
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
+++|--..-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..++ +|+...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 344544455567778888999999999998764 4777888899999999999999888884 78999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
.+........-++.|.++.+..... +-..+.....+.++++++.+.++...+.. +....+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9988888777788888888775433 22223333445789999999998877764 456778888888889999
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
+++.|.+.|.....-. +-+...|+.+-.+|.+.++-.+|...+.+..+ .+ .-+...|..-+....+.|.++.|.+.+
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999998887742 22467899999999999999999999999887 44 445667777777788999999999999
Q ss_pred HHHHhCCC-CccHHHHHHHHHHH
Q 037620 245 DEMKARGV-LPVMHMYSTLINSL 266 (330)
Q Consensus 245 ~~~~~~~~-~~~~~~~~~l~~~~ 266 (330)
.++..... ..|..+...++...
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHH
Confidence 88765311 11444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-07 Score=80.04 Aligned_cols=243 Identities=6% Similarity=0.019 Sum_probs=185.7
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC-----ChHHHHHHHHHHhccCcHHHHHHH
Q 037620 28 RAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP-----DVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
.|.++-+.++. -|-+...|-..|......++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++
T Consensus 1443 saeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34444333333 2445677888888899999999999999999865 222 235677888877777888889999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (330)
|+++.+.. ..-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-..
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99998764 23457888999999999999999999999876 3357788999999999999999999999998875222
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH--HHH
Q 037620 183 -PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM--HMY 259 (330)
Q Consensus 183 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 259 (330)
-........+..-.+.|+.+.+..+|+.... ..+-....|+..++.-.++|+.+.++.+|+++...++.|-. ..|
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 1234555566667789999999999999886 34445668999999999999999999999999998877643 345
Q ss_pred HHHHHHHhccCChhHHHHH
Q 037620 260 STLINSLCHEDKLDDACKY 278 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~ 278 (330)
...+..=-..|+-..+..+
T Consensus 1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHhcCchhhHHHH
Confidence 5556554555664444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-10 Score=56.69 Aligned_cols=33 Identities=39% Similarity=0.709 Sum_probs=23.9
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 037620 4 FGLKQELPDFNRLIDTLCKSRHVERAQEVFDKM 36 (330)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 36 (330)
.|++||..+||+||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777777777777777777777777777766
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-06 Score=78.73 Aligned_cols=308 Identities=8% Similarity=0.001 Sum_probs=194.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhC--CC----CCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh----HH
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKR--RF----DPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV----VS 82 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 82 (330)
.....+...|++++|..++...... .. .+.. .....+...+...|++++|...++.....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3445556778999999888876542 10 1111 12222334556789999999999988764111121 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCC---CC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCC--C-Ch
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNC---KP--SPHIFCTLINGLGSEKRLSEALQFFGQSKKR----GFE--P-EA 150 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 150 (330)
.+.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+.+.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45566677789999999999988764310 11 1234556677788899999999988876542 211 1 12
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcC--CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCCCchHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCG--IGP--NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGTEPTVST 223 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 223 (330)
..+..+...+...|++++|...+++..... ..+ ....+..+...+...|++++|...+...... .+.......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 234455566777899999999888765421 111 2334455666778899999999988887531 111111101
Q ss_pred H--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-Chhh
Q 037620 224 Y--EIVVRMFCYNAQVDMAMRIWDEMKARGVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDI----GIRP-PGQL 293 (330)
Q Consensus 224 ~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 293 (330)
. ...+..+...|+.+.|..++........... ...+..+..++...|++++|...+++.... |..+ ...+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 1122445568899999998877554221111 111345667888899999999999988753 2222 1345
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
...+..++.+.|+.++|...+.+..+...
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 66677888999999999999988876543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-06 Score=65.12 Aligned_cols=258 Identities=11% Similarity=0.063 Sum_probs=170.5
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
-|+...|+ ++-+.-.|++..++..-....... .+...-..+.++|...|.+.....- .... -.|.......+
T Consensus 7 g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~ 78 (299)
T KOG3081|consen 7 GPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLL 78 (299)
T ss_pred CcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHH
Confidence 34433443 345555688888877665554432 3455555566777777776544432 2222 23444444444
Q ss_pred HHHHhccCcHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 87 INAHCSAKRYDE-AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 87 l~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
......-++.+. ..++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHR 152 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHH
Confidence 444444444333 33455555555444454444555678999999999999887622 23334444556778889
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
++-|...++.|.+.. +..|.+.|..++.+ .+...+|+-+|+++.+ ..+|+..+.+....++...|++++|.
T Consensus 153 ~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 153 FDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHH
Confidence 999999999998843 66788888887765 3568899999999976 57888889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCChhH-HHHHHHHHHh
Q 037620 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD-ACKYFQEMLD 284 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 284 (330)
.++++....... ++.+...++-+-...|...+ ..+.+.++..
T Consensus 228 ~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 228 SLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999988666 66777766666566665544 4456666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-08 Score=81.44 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=158.6
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV 157 (330)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (330)
|-...-..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+. +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344556677778888888888887753 4666788888888888888888887774 67888888887
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
.......-++.|.++.+..... .-..+.....+.+++.++.+.|+.-.+. .+....+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhh
Confidence 7776666677777777654332 1111222223467788888888776652 233455777777777888888
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+.|.+.|..-....+. +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888877766444 56778888888888888888888888888766 456667777777778888888888888777
Q ss_pred HhcCC
Q 037620 318 DKLRK 322 (330)
Q Consensus 318 ~~~~~ 322 (330)
.....
T Consensus 614 l~~~~ 618 (777)
T KOG1128|consen 614 LDLRK 618 (777)
T ss_pred HHhhh
Confidence 65544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-07 Score=72.21 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=120.1
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChH---H
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV---VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPH---I 117 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 117 (330)
....+..+...+...|+++.|...|+++..... .+. ..+..+..++...|++++|...++++.+.. |.+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 455677777778888888888888888877631 122 456667788888888888888888887654 22222 4
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHH
Q 037620 118 FCTLINGLGSE--------KRLSEALQFFGQSKKRGFEPEA-PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188 (330)
Q Consensus 118 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (330)
+..+..++... |++++|.+.++.+.+.. |+. ..+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 55555555543 67888888888887662 332 22222211100 000 00 0111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
..+...+.+.|++++|...++...+.....| ....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455668888999999988888876433222 4567788888889999999999888887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-07 Score=71.96 Aligned_cols=186 Identities=11% Similarity=-0.050 Sum_probs=130.5
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh---HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh--HH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI---KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV--VS 82 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 82 (330)
.....+..+...+...|++++|...|+.+.... |.+. .++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667888888999999999999999998742 2232 46778888999999999999999999987422111 24
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH
Q 037620 83 YGIMINAHCSA--------KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN 154 (330)
Q Consensus 83 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (330)
+..+..++... |+.+.|.+.|+++.... |.+...+..+..... .... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence 55555556554 78899999999998775 333333332221111 0000 0 01112
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKCGI--GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+...+.+.|++.+|...++....... +.....+..+..++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456678889999999999999887532 22356788899999999999999999888865
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.5e-06 Score=64.22 Aligned_cols=272 Identities=9% Similarity=0.072 Sum_probs=198.2
Q ss_pred CChhhHHHHH---HHHHccCChHHHHHHHHHHhhCCCCCChHHH-HHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hH
Q 037620 8 QELPDFNRLI---DTLCKSRHVERAQEVFDKMKKRRFDPDIKSY-TILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VV 81 (330)
Q Consensus 8 ~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 81 (330)
.|+..|.++. ..|...|+...|+.=++..++. +||-..- ..-...+.+.|.++.|..=|+..++....-+ ..
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 3444454443 4678889999998888888874 5775432 2234567899999999999999998742111 11
Q ss_pred ------------HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC
Q 037620 82 ------------SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE 149 (330)
Q Consensus 82 ------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (330)
.....+..+...|+...|+.....+++.. +.+...+..-..+|...|++..|+.=+....+.. ..+
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~Dn 222 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDN 222 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccc
Confidence 12234455667899999999999999886 8899999999999999999999999888887774 345
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH-------------HHHHHHcCCHHHHHHHHHHhhcCCC
Q 037620 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV-------------LHHLIKAGRTEEAYSVFKRMSRKPG 216 (330)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (330)
..++--+-..+...|+.+.++...++..+. .||...+-.. +......++|-++++..+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 566666777888899999999888888774 4554322111 1233456778888888887766222
Q ss_pred CCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 217 TEP--TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 217 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
..+ ....+..+-.++...+++.+|++...+..+.... |..++..-..+|.....++.|+.-|+...+.+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 111 1223455667777889999999999998876433 58888888999999999999999999888654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-06 Score=67.57 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=110.2
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHH-------HHHHHHHc
Q 037620 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDI-------VLHHLIKA 198 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~ 198 (330)
.+..++..|.+.+....+.. .+..-++....+|...|.+..+....+...+.|.. ...-|+. +..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 33334444444444443332 23333344444455555555444444444333321 1112222 22355556
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHH-------------------------HHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVSTY-------------------------EIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
++++.+...|.+.... ...|+...- ..-...+.+.|++..|...|.+++...+.
T Consensus 312 ~~~~~ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HhHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 7777787777776552 222222110 11134466778888888888888887644
Q ss_pred ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
|...|....-+|.+.|.+..|++-.+..++.. ++....|..=..++....++++|.+.+++..+.++
T Consensus 391 -Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 391 -DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 77888888888888888888888877777653 33445555556666677788888888888777664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-07 Score=66.23 Aligned_cols=164 Identities=10% Similarity=0.049 Sum_probs=106.7
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
+..+ ..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 55556666677766666666554333 13344555567777777777777777777776643 456777777777
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChh
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLD 273 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 273 (330)
+|.+.|+.+.|..-|.+..+-.+- +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+..+....|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 777777777777777777663222 3345566777777777777777777777665444 5556666666677777777
Q ss_pred HHHHHHHHHH
Q 037620 274 DACKYFQEML 283 (330)
Q Consensus 274 ~a~~~~~~~~ 283 (330)
+|..+...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 7777665443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-07 Score=66.32 Aligned_cols=118 Identities=9% Similarity=0.093 Sum_probs=79.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhhCC--hhHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY-CWSMR--INDA 169 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 169 (330)
.++.+++...++...+.+ |.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555666666666666665 6677777777777777777777777777777664 34556666666653 45555 4777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
..++++..+.+.. +...+..+...+...|++++|...|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777775432 556666777777777777777777777765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-06 Score=65.15 Aligned_cols=268 Identities=12% Similarity=0.123 Sum_probs=167.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHH-HHHHhhccChHHHHHHHHHHHhCC------------
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTIL-LEGWGQQKNLLSMNEVYREMKDDG------------ 75 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~------------ 75 (330)
+......|..+|....++..|-+.++.+... .|...-|... ...+.+.+.+..|+++...|.+..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566777788888888888888888888763 3444444321 234445566666666665554320
Q ss_pred ------C-------------CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 76 ------F-------------EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQ 136 (330)
Q Consensus 76 ------~-------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (330)
- .-+..+.+...-...+.|+++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk 199 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALK 199 (459)
T ss_pred HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHH
Confidence 0 0122333333344557899999999999988754233345666555 5667899999999
Q ss_pred HHHHHHhcCCCCCh----------------------------hhHHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcHHH
Q 037620 137 FFGQSKKRGFEPEA----------------------------PTYNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNTRT 187 (330)
Q Consensus 137 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 187 (330)
...+++++|+...+ ..+|.-...+.+.++++.|.+.+-.|..+. -..|+.|
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvT 279 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVT 279 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchh
Confidence 99999999964211 112333334567789999998888875432 3356777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL-PVMHMYSTLINSL 266 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 266 (330)
...+.-.- ..+++.+..+-+.-+..... -...||..++-.||++.-++.|-.++.+-...... .+...|+. +.++
T Consensus 280 LHN~Al~n-~~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaL 355 (459)
T KOG4340|consen 280 LHNQALMN-MDARPTEGFEKLQFLLQQNP--FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDAL 355 (459)
T ss_pred hhHHHHhc-ccCCccccHHHHHHHHhcCC--CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHH
Confidence 76654332 23456666666666655322 33458888999999999999999888763332111 23344443 3333
Q ss_pred h-ccCChhHHHHHHHHHH
Q 037620 267 C-HEDKLDDACKYFQEML 283 (330)
Q Consensus 267 ~-~~~~~~~a~~~~~~~~ 283 (330)
. ..-..++|.+-+..+.
T Consensus 356 It~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 3 3455677777666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.9e-07 Score=78.69 Aligned_cols=220 Identities=11% Similarity=0.121 Sum_probs=156.8
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV-VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++...+.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35678999999999999999999999987776 3443 3444444456666664444333 34
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
+.......++..+..+...+...+ -+...+..+..+|.+.|+.+++..+++++.+.. +-++.+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 455555556655555555665543 355678889999999999999999999999987 45888999999999999 99
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-------------------CCCccHHHHHHH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-------------------GVLPVMHMYSTL 262 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l 262 (330)
++|..++.+.... +...+++..+..+|.++... +..--..++..+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 9999999887652 33344455555555544443 222234455666
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 263 INSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (330)
-..|-..++|+++..+++.+++.. +-|......++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 678888999999999999999876 336666777777776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-05 Score=65.81 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=111.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
.-+=+..+...|++++|.+....+...+ |-+...+..=+-+..+.+.+++|+.+.+.-... ..+...+.--+.+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3344566778889999999999998854 556666777677788888888888655443211 1111111122344556
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC------------------------
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP------------------------ 148 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------ 148 (330)
.+..++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 777777777776221 2233355555666777777777777777765443110
Q ss_pred ---ChhhHHHH---HHHHHhhCChhHHHHHHHHHHHcC--------C-----CCcHH-HHHHHHHHHHHcCCHHHHHHHH
Q 037620 149 ---EAPTYNAV---VGAYCWSMRINDAYRMMDEMRKCG--------I-----GPNTR-TYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 149 ---~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~--------~-----~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
...+|..+ ...+...|++.+|+++++...+.+ . ..... .-..+.-++...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11233322 233456678888888877762211 0 00001 1122334556678888888877
Q ss_pred HHhhc
Q 037620 209 KRMSR 213 (330)
Q Consensus 209 ~~~~~ 213 (330)
..+.+
T Consensus 248 ~~~i~ 252 (652)
T KOG2376|consen 248 VDIIK 252 (652)
T ss_pred HHHHH
Confidence 77665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-07 Score=66.61 Aligned_cols=156 Identities=8% Similarity=0.119 Sum_probs=117.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4578889998887655433221 11 0 1223566778888888877764 44788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHhCCC--HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQ--VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKY 278 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 278 (330)
++|...+++..+. .+.+...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998872 33456677777776 467676 59999999999988766 778889999999999999999999
Q ss_pred HHHHHhcCCCCChhhH
Q 037620 279 FQEMLDIGIRPPGQLF 294 (330)
Q Consensus 279 ~~~~~~~~~~~~~~~~ 294 (330)
|+++++.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99998765 4444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-07 Score=65.13 Aligned_cols=95 Identities=9% Similarity=-0.099 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+.....+ +.+..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445555666666666666666666553 3355666666666666666666666666666654 5566666666666666
Q ss_pred cCcHHHHHHHHHHHHhc
Q 037620 128 EKRLSEALQFFGQSKKR 144 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (330)
.|++++|...|....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-06 Score=70.18 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (330)
..++++.+++..+.+ +.|+.+...+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 346777788777753 2233333333334667788888888888888875566888888888888888888888888877
Q ss_pred HHhcCCCCC--------------------hHHHHHHHHHHhc-----------------------cCcHHHHHHHHHHH-
Q 037620 106 MEATNCKPS--------------------PHIFCTLINGLGS-----------------------EKRLSEALQFFGQS- 141 (330)
Q Consensus 106 ~~~~~~~~~--------------------~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~- 141 (330)
....- +.| ..|...++..+-. ..+..++.+...++
T Consensus 539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 65431 111 1122222222210 00111111111110
Q ss_pred -------HhcC---------CCCCh--------hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 037620 142 -------KKRG---------FEPEA--------PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197 (330)
Q Consensus 142 -------~~~~---------~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (330)
...+ ..|.. ..|......+.+.+..++|...+.+..+.. +.....|......+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 0001 01111 124445556677788888888888877653 4466777777788889
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHH--HHHHHHhCCCCccHHHHHHHHHHHhccCChhHH
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR--IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 275 (330)
.|++++|...|..... -.+.++....++..++...|+..-|.. ++.++.+.++. +...|..+...+.+.|+.++|
T Consensus 697 ~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHH
Confidence 9999999999998865 222345567889999999998887877 99999998877 899999999999999999999
Q ss_pred HHHHHHHHhc
Q 037620 276 CKYFQEMLDI 285 (330)
Q Consensus 276 ~~~~~~~~~~ 285 (330)
.+.|....+.
T Consensus 774 aecf~aa~qL 783 (799)
T KOG4162|consen 774 AECFQAALQL 783 (799)
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=53.68 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhhccChHHHHHHHHHH
Q 037620 40 RFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71 (330)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 71 (330)
|++||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-06 Score=64.81 Aligned_cols=159 Identities=9% Similarity=0.042 Sum_probs=112.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
..+-..+...|+-+....+..+..... +.+.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555666777777777777766654433 4555666667777788888888888888877764 66778888888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 243 (330)
|+++.|..-|.+..+... -++...+.+.-.+.-.|+.+.|..++..... ...-|..+-..+.......|+++.|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888877777532 2556677777777778888888888887765 2223555556677777788888888877
Q ss_pred HHHH
Q 037620 244 WDEM 247 (330)
Q Consensus 244 ~~~~ 247 (330)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-05 Score=73.38 Aligned_cols=301 Identities=10% Similarity=-0.010 Sum_probs=178.5
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC------CCC--hHHHHHHHHHHh
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF------EPD--VVSYGIMINAHC 91 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~~ 91 (330)
+...|+++.+..+++.+.......+..........+...|+++++..++......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334455555555555542211111222223344455677889999888887754310 111 112222334566
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHh
Q 037620 92 SAKRYDEAVELFREMEATNCKPS----PHIFCTLINGLGSEKRLSEALQFFGQSKKRGF---EP--EAPTYNAVVGAYCW 162 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 162 (330)
..|++++|...+++........+ ....+.+...+...|++++|...+.+...... .+ .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999988765321111 12445566677889999999999888764311 11 12344556667788
Q ss_pred hCChhHHHHHHHHHHH----cCCC--C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCCCchHHHHHHHHHHH
Q 037620 163 SMRINDAYRMMDEMRK----CGIG--P-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 163 ~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 232 (330)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... .+.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998887654 2211 1 1233445556677789999999888876541 111112334455667788
Q ss_pred hCCCHHHHHHHHHHHHhCC--CCccHH--HH--HHHHHHHhccCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHh
Q 037620 233 YNAQVDMAMRIWDEMKARG--VLPVMH--MY--STLINSLCHEDKLDDACKYFQEMLDIGIRPP---GQLFSNLKQALRD 303 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 303 (330)
..|+++.|.+.++...... ...... .. ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 111110 00 1122344557889999998877654221111 1113456777889
Q ss_pred cCchHHHHHHHHHHHhc
Q 037620 304 EGMEETAVVLAQKIDKL 320 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~ 320 (330)
.|++++|...+++....
T Consensus 704 ~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 704 LGQFDEAEIILEELNEN 720 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999887654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-05 Score=65.37 Aligned_cols=292 Identities=13% Similarity=0.170 Sum_probs=182.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC-----------
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE----------- 77 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 77 (330)
.|-.+.+.|-..|+++.|..+|+...+...+-- ..+|..-...=.+..+++.|+++.+.....--.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 477788888888999999999988887543322 345655566666777888888887776543111
Q ss_pred C------ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-
Q 037620 78 P------DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA- 150 (330)
Q Consensus 78 ~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 150 (330)
+ +...|...+..--..|-++....+|+++.+..+ .++.........+-...-++++.+++++-+..--.|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 223444555555556777788888888887763 34444444444455566678888888776555333443
Q ss_pred hhHHHHHHHHHhh---CChhHHHHHHHHHHHcCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHhhcCCCCCCc--hHH
Q 037620 151 PTYNAVVGAYCWS---MRINDAYRMMDEMRKCGIGPNTRTYDIVL--HHLIKAGRTEEAYSVFKRMSRKPGTEPT--VST 223 (330)
Q Consensus 151 ~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 223 (330)
..|+..+.-+.+. ..++.|..+|++..+ +.+|...-+--|+ ..--+.|-...|..++++... ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 3566666555542 368889999999988 5555433222222 112245778889999998765 34443 346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHH---HHHHHHhccCChhHHHHHHHHHHhc-CCCCChhhHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYS---TLINSLCHEDKLDDACKYFQEMLDI-GIRPPGQLFSNLKQ 299 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 299 (330)
|+..|.-....=.+.....+|++.++. -|+..+-. .....=++.|..+.|..++..-.+. ....+...|..--.
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 777776555555566677788887765 34544332 2334446788899999888766542 23334555665555
Q ss_pred HHHhcCchHH
Q 037620 300 ALRDEGMEET 309 (330)
Q Consensus 300 ~~~~~g~~~~ 309 (330)
.=.+.|+-+.
T Consensus 703 FEvrHGnedT 712 (835)
T KOG2047|consen 703 FEVRHGNEDT 712 (835)
T ss_pred HHHhcCCHHH
Confidence 5567777443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-05 Score=62.67 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=41.7
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.++++..|++.+|.++|-++....++.+..-...+.++|.+.++++-|+.++-++.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 3566777889999999999887655444333344456788889999999887765543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-05 Score=64.20 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (330)
.+|...+..-.+..-++.|..+|.+..+.....-++.+.++++..+| +++...|.++|+--.++- .-++.--...+.-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHH
Confidence 46667777777888888999999998885444447777888887665 467888999998755441 1133344566777
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 266 LCHEDKLDDACKYFQEMLDIGIRPP--GQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
+...++-..+..+|++.+..++.|+ ...|..++.-=..-|+...+.++-+++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7888888899999999988765554 56888888877888998888888776643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-05 Score=60.23 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=165.1
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+-+.-.|.+..++..-....... -+...-.-+.++|...|++..... ++.... .|....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 44555677777776665554432 244444456677777777654432 333333 444455555555555555555
Q ss_pred HHHH-HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 133 EALQ-FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 133 ~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.-.. +.+.+.......+......-...|+..+++++|++...... +......=+..+.+..+.+-|...+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 34444444333333333444567889999999999887621 2333333455667888999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 037620 212 SRKPGTEPTVSTYEIVVRMFCY----NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 287 (330)
.+ + .+..|.+.|..++.+ .+.+..|.-+|++|.++ ..|++.+.+....++...|++++|..+++..++..
T Consensus 164 q~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 164 QQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred Hc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 86 1 345677777777754 35789999999999875 46788999999999999999999999999999876
Q ss_pred CCChhhHHHHHHHHHhcCchHH-HHHHHHHHHhcCC
Q 037620 288 RPPGQLFSNLKQALRDEGMEET-AVVLAQKIDKLRK 322 (330)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 322 (330)
..++.+...++-+-...|...+ ..+.+.++....+
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 3467777777766666666544 4566666655444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-06 Score=75.82 Aligned_cols=137 Identities=7% Similarity=-0.031 Sum_probs=110.8
Q ss_pred CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 40 RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
.++.++..+..|.....+.|..++|+.+++...+.. +-+......++..+.+.+++++|...+++..... +.+.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 355667888888888888899999999998888873 3356667778888888899999999988888876 66777778
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888999999999998888743 445778888888888889999998888888764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.9e-07 Score=62.73 Aligned_cols=110 Identities=13% Similarity=0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..++++..+. .|+ .+..+...+...|++++|...|+...... |.+...+..+..++.+.|++++|...|++....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555544 333 34456777788888888888888888776 677888888888888888888888888888877
Q ss_pred CCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
. +.+...+..+..++...|++++|...|+......
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4 4577778888888888888888888888887753
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-06 Score=72.12 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=120.0
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
...+...+..|.....+.|.+++|..+++...+.. |-+......++.++.+.+++++|...+++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45578899999999999999999999999999886 7778888999999999999999999999999885 446667788
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999854 33578999999999999999999999999876
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-05 Score=62.61 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--------HhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK--------RMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
+..+..++...-+....-...+...++......|+++.|..++. .+.+ .+..|. +...+...+.+.++-
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCC
Confidence 45566666665554332234556667778888999999999998 4444 333443 556777778888887
Q ss_pred HHHHHHHHHHHhC--CCCccHHH----HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHH
Q 037620 238 DMAMRIWDEMKAR--GVLPVMHM----YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 311 (330)
Q Consensus 238 ~~a~~~~~~~~~~--~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (330)
+.|..++.+.... .-.+.... +..++..-.+.|+-++|..+++++.+.. +++..+...++.+|.+. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 7777777766542 11112222 3333334456799999999999999865 67888888999998876 677877
Q ss_pred HHHHHHH
Q 037620 312 VLAQKID 318 (330)
Q Consensus 312 ~~~~~~~ 318 (330)
.+-+.+.
T Consensus 512 ~l~k~L~ 518 (652)
T KOG2376|consen 512 SLSKKLP 518 (652)
T ss_pred HHhhcCC
Confidence 7766553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-05 Score=57.95 Aligned_cols=186 Identities=13% Similarity=0.119 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHhh---CC-CCCChH-HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHH
Q 037620 24 RHVERAQEVFDKMKK---RR-FDPDIK-SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDE 98 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (330)
.+.++..+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+... ++-+...-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 345555555555543 12 333332 2344444555556666666666665554 22222222222222334455666
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 99 AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
|+++|+.+.+.+ |.|..++-.-+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666666555 445555544444444455555555555554444 344555666666666666666666666665554
Q ss_pred cCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhc
Q 037620 179 CGIGPNTRTYDIVLHHLIKAG---RTEEAYSVFKRMSR 213 (330)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 213 (330)
.. |.++..+..+...+.-.| +.+.+.+.|.+..+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 32 123333333433333222 33444555554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-06 Score=61.43 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
.....+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++....+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344445555556666666666666665543 2355555556666666666666666666655554 44555555566666
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 126 GSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (330)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-05 Score=61.89 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=96.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHcCC
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN-TRTYDIVLHHLIKAGR 200 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 200 (330)
...+...|+++.|+..+..+... .+.|+.........+.+.++.++|.+.++++.... |+ ....-.+..++.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCC
Confidence 33455677788888888777766 24455555666677777888888888888777753 33 4555666777788888
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQ 280 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 280 (330)
+.+|..+++.... ..+.|+..|..|.++|...|+..++..-.. ..+...|+++.|...+.
T Consensus 390 ~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 390 PQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred hHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 8888888877765 455566677888888888777666654433 34455677777777777
Q ss_pred HHHhc
Q 037620 281 EMLDI 285 (330)
Q Consensus 281 ~~~~~ 285 (330)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 77653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-06 Score=60.72 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=72.7
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 68 YREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147 (330)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (330)
++...... +.+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...+++..+.+ +
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 44444442 1133445556667777777777777777776665 5566777777777777777777777777776664 4
Q ss_pred CChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 148 PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.+...+..+..++...|++++|...++...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666677777777777777777777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-05 Score=68.88 Aligned_cols=211 Identities=13% Similarity=0.188 Sum_probs=116.9
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+++....+....|.. -+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 4456777777777777777776655332 35566777777888888888777777776666544443 345677
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
+|++.++..+.++++ ..|+......+..-|...|.++.|.-+|.... -|..|...+...|++.
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHH
Confidence 777777766655443 22444444555555555555555555444332 2333344444444444
Q ss_pred HHHHHHHH------------------------HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 037620 239 MAMRIWDE------------------------MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF 294 (330)
Q Consensus 239 ~a~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 294 (330)
.|...-++ |...++.....-...++..|-..|-+++.+.+++..+... +.....|
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmf 1316 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMF 1316 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHH
Confidence 43332222 2223333344445666777777777777777776655221 2234456
Q ss_pred HHHHHHHHhcCchHHHHHHHHH
Q 037620 295 SNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 295 ~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
+.|.-.|.+- ++++..+-++-
T Consensus 1317 TELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHHH
Confidence 6666555553 34444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.9e-06 Score=70.14 Aligned_cols=166 Identities=15% Similarity=0.274 Sum_probs=85.7
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
.....+|.+|+.+++.+.... .-..-|..+..-|...|+++.|.++|-+. ..++--|.+|.+.|+|+.|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 334455556666665555443 22334555556666666666666665432 2344455666666666666
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.++-++.. |.......|..-..-+-..|++.+|.+++-.+.. |+. .|.+|-+.|..+..+++.++-..
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 66554432 2333444555555555556666666665554322 332 34555666666655555544221
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
.. -..|...+..-+-..|+...|..-|-+
T Consensus 879 d~---l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 879 DH---LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hh---hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 11 122344455555556666666555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00018 Score=62.95 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=155.6
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHH--HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG--WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
....+++.+|+.....+.+. .|+.. |...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 45678999999999988774 24443 3333333 46889999999998888776544 8899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC-C---------hh
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM-R---------IN 167 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~ 167 (330)
+|..+|++..... |+......+..+|.+.+.+.+-.+.--++.+. .+.+...+-++++.+...- . ..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999998875 66888888888999999888766666666554 3445555555666555432 1 12
Q ss_pred HHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCG-IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 168 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
-|.+.++.+.+.+ ..-+..-...-...+...|.+++|++++..-....-...+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566665544 111222222233445578889999999943322122333444445667778888999999999999
Q ss_pred HHhCCCC
Q 037620 247 MKARGVL 253 (330)
Q Consensus 247 ~~~~~~~ 253 (330)
+...+..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 8887654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-05 Score=56.45 Aligned_cols=191 Identities=9% Similarity=0.067 Sum_probs=137.9
Q ss_pred ccChHHHHHHHHHHHhC---C-CCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 58 QKNLLSMNEVYREMKDD---G-FEPDVV-SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
..+.++..+++..+... | ..++.. .|..++-+....|+.+.|..+++.+...- |-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34567777777777643 3 444544 35566677778899999999999988763 444443333334456689999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+|.++++.+.+.+ +.|..++..-+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999886 556677776666677778888888888887776 55699999999999999999999999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCC
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~ 253 (330)
- ..|.++..+..+...+.-.| +...+.+.|.+..+....
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 5 23334444555555544433 667888899888876543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-06 Score=72.31 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC-CCChHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF-EPDVVSYGIMINA 89 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~ 89 (330)
..|..|-..|+...+...|...|+...+.+ +.+...+......|++..+++.|..+.-..-+... ..-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 457777777777777788888888777643 34667777888888888888888877333222210 0011222334445
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH--HHHHHHhhCChh
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA--VVGAYCWSMRIN 167 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~ 167 (330)
|.+.++...|...|+...... |.|...|..+..+|...|.+..|.++|.++.... |+. +|.. ....-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHH
Confidence 666677777777777777665 6677777888888888888888888887776652 222 1211 122234456666
Q ss_pred HHHHHHHHHH
Q 037620 168 DAYRMMDEMR 177 (330)
Q Consensus 168 ~a~~~~~~~~ 177 (330)
++...+..+.
T Consensus 648 eald~l~~ii 657 (1238)
T KOG1127|consen 648 EALDALGLII 657 (1238)
T ss_pred HHHHHHHHHH
Confidence 6666555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-05 Score=62.19 Aligned_cols=201 Identities=11% Similarity=0.091 Sum_probs=128.5
Q ss_pred CChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 24 RHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
.++.++...-+.+...+ -.|+...+...+.+......-..+..++.+..+. . -.....-....+...|+.++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--G-GLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--c-chHHHHHHHHHHHHhcccchHHH
Confidence 34555666666665532 2345555555555444433333333333333221 1 22222223334556788888888
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-APTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
.++.+.... |-|+.........+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++.+|..+++......
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 888877664 566666677778888888888888888888777 344 5566677788888888888888888877663
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.|+..|..|.++|...|+..++..... ..+...|+++.|...+....+.
T Consensus 405 -p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 -PEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -CCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 4577888888888888887777655443 3355667777777777766654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-06 Score=67.77 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
....++..+...++++.|..+++++.+. .|+. ...+++.+...++-.+|.+++.+..+.... +...+..-...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3344455555566666666666666552 1332 234555555666666666666666654332 445555555566
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.++++.|+.+.+++.+.. +-+..+|..|+.+|...|+++.|...++.++
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666677777776666542 2344566666677777777777766666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.9e-06 Score=67.80 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
..-..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+..... +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556677777889999999999998773 44 34457777777888889999999988765 66777777778888
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
.+.++++.|+++.+++.+.. +.+..+|..|..+|...|+++.|+-.++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999998873 44566899999999999999999988887653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00028 Score=58.40 Aligned_cols=120 Identities=10% Similarity=0.140 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
.+.....++++.......|+. +|...+....+..-+..|+.+|.+..+.+..+ ...++++++..+| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 445555666666544555554 57778888888889999999999999887776 6778888888776 47778999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 280 QEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
+--+..- ..++..-...+.-+...++-..+..+|++....+.+
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 8765531 234444455677777888888888899888877544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.2e-06 Score=57.30 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH--HHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTE-PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM--HMYSTLI 263 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 263 (330)
.|..++..+ ..++...+...++.+....+.. ........+...+...|++++|...|+.+......|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3666666666666666522211 11223334556666777777777777777665433221 2333455
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 264 NSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
..+...|++++|+..++..... ......+......+.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666777777777777553322 23344555666677777777777777664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-05 Score=66.68 Aligned_cols=229 Identities=16% Similarity=0.119 Sum_probs=129.5
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-C--------CCCChHHHHHHHHHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-G--------FEPDVVSYGIMINAH 90 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~ll~~~ 90 (330)
|...|+.+.|.+-++.++ +...|..|.+.|.+.++++-|.-.+-.|... | -.|+ .+=..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 556688888877666554 3457888888888887777666555555322 0 1121 2222233334
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
...|..++|..+|++-+.. ..|=..|-..|.+++|.++-+.-.+..+ ..||......+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5678888888888877653 3344556677888888887664333221 245555666666677788887
Q ss_pred HHHHHHHH----------cC---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 037620 171 RMMDEMRK----------CG---------IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231 (330)
Q Consensus 171 ~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (330)
+.|++... .. -..|...|..-...+-..|+.+.|+.+|..... |-.+++..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 77765311 10 001222333333333345555555555554432 33445555
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 232 CYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|-.|+.++|-++-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566666665555442 134445556666666666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00052 Score=60.21 Aligned_cols=225 Identities=10% Similarity=0.119 Sum_probs=155.1
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH--HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN--AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
....+++.+|.....++.+. .|+... ..++. ...+.|+.++|..+++.....+ +.|..|...+-.+|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 34567889999999999887 345433 23333 4568899999999998887766 448899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC----------HH
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR----------TE 202 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~ 202 (330)
+|..+|++.... .|+......+..+|.+.+.+.+-.+.--++-+. .+-....+-++++.....-. ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999877 567777778888898888776654444444332 34455666666665544321 23
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHH-HHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 203 EAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD-EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
-|...++.+.++.|..-+..-...-...+...|++++|+.++. ...+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4666777777655422222222222334567889999999994 444443333444445566777888999999998888
Q ss_pred HHhcC
Q 037620 282 MLDIG 286 (330)
Q Consensus 282 ~~~~~ 286 (330)
+.+.|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88876
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.7e-05 Score=64.77 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=101.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhC-C--------CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-R--------FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD 79 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (330)
+..+|..+.+.|.+.++++-|.-.+-.|... | -.|+ ..=....-.....|-+++|+.+|.+..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4568999999999999999888777776542 1 1121 22222333346778899999999888753
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh----------cC----
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK----------RG---- 145 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~---- 145 (330)
..|=..|...|.|++|.++-+.-....+ ..||.....-+...++.+.|++.|++... ..
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 2344556778999999888755333222 24566666666667778888877765321 10
Q ss_pred -----CCCChhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 146 -----FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 146 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
-..|...|......+-..|+.+.|+.+|....
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 12244556666666667788888888887654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-05 Score=56.54 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=35.0
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDV--VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
..+...|++++|...|+........|+. .....+...+...|++++|+..++..... ......+.....+|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 3444445555555555554444311111 12222344444445555555444332211 1223333344444444444
Q ss_pred HHHHHHHHH
Q 037620 131 LSEALQFFG 139 (330)
Q Consensus 131 ~~~a~~~~~ 139 (330)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00023 Score=63.37 Aligned_cols=241 Identities=12% Similarity=0.116 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++..+.+....+..-.|... +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3456777888777888888887766443 267788888999999999999888887776655444443 56777
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
+|++.++..+.++++. -|+......+..-|...+.++.|.-++.. ...|..+...+...|+++.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Confidence 8888888777666542 35555555555556666666655544432 2233333444444444444
Q ss_pred HHHHHHHh------------------------hcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHH
Q 037620 204 AYSVFKRM------------------------SRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY 259 (330)
Q Consensus 204 a~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (330)
|.+.-++. .. .++.....-...++..|...|-+++...+++......- .....|
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER-AHMgmf 1316 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLER-AHMGMF 1316 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH-HHHHHH
Confidence 33322221 11 12223344456788888888888888888877554321 244567
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+.|.-.|.+-. +++..+-++-.- +....-.+++++....-|.+..-++.+-
T Consensus 1317 TELaiLYskyk-p~km~EHl~LFw------sRvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1317 TELAILYSKYK-PEKMMEHLKLFW------SRVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77776666533 444444433332 2222346788888888787776666544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00041 Score=57.30 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=139.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH-------HH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA-------VV 157 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~ 157 (330)
.+.++..+..++..|++.+....+.. .+..-++....+|...|.+..+........+.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 44455555566667777777666654 45555666777888888888887777776666532 2222333 33
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHH-------------------------HHHHHHHcCCHHHHHHHHHHhh
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDI-------------------------VLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
.+|.+.++++.+...|.+.......|+..+-.. -...+.+.|++..|...|.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 456667888889888887665443333322111 1234668899999999999988
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
.. .+-|...|....-+|.+.|.+..|+.-.+..++.+.. ....|..=..++....+++.|.+.|++.++.+ |+..
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~ 460 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNA 460 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhH
Confidence 73 4667889999999999999999999988888877433 44555555667777889999999999998764 4444
Q ss_pred hH
Q 037620 293 LF 294 (330)
Q Consensus 293 ~~ 294 (330)
-+
T Consensus 461 e~ 462 (539)
T KOG0548|consen 461 EA 462 (539)
T ss_pred HH
Confidence 33
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.7e-06 Score=67.03 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=81.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHH
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY 259 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (330)
.+.+......++..+....+.+.+..++.+....... ..-..|..++++.|...|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666677777777766652211 122234457777777777777777777777777777777777
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (330)
+.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666555666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.3e-07 Score=46.47 Aligned_cols=33 Identities=48% Similarity=0.859 Sum_probs=18.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD 44 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 44 (330)
+||++|.+|++.|++++|.++|+.|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.5e-07 Score=45.71 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=17.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCC
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDP 43 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (330)
+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00011 Score=63.20 Aligned_cols=133 Identities=17% Similarity=0.301 Sum_probs=75.6
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 240 (330)
.....|.+|+.+++.+..+.. -..-|..+...|...|+++.|.++|.+.- .++-.|.+|.+.|+|..|
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 344556666666666655432 23345556666666677777666665431 233445666677777766
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
.++-.+.. |.......|-.-..-+-..|++.+|.+++-.. | .|+ ..+..|-+.|..+..+++.++
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 66655432 33334445555555556666666666665433 2 233 245667777777777666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=65.20 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhH
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT--NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
.+.+......+++.+....+.+.+..++-++... ....-+.|..++++.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456666777777777777777777777777654 22233445567788888888888888888877778888888888
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA 198 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (330)
+.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877777766665666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.3e-07 Score=45.38 Aligned_cols=33 Identities=30% Similarity=0.642 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD 79 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (330)
+|++++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=9e-07 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP 78 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (330)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-05 Score=52.56 Aligned_cols=99 Identities=8% Similarity=-0.052 Sum_probs=50.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC--CChHHHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRF--DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE--PDVVSYGIMI 87 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 87 (330)
++..+...+.+.|++++|.+.|+.+.+... +.....+..+..++.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555555566666666666666554210 011234444555556666666666666665543211 1133444555
Q ss_pred HHHhccCcHHHHHHHHHHHHhcC
Q 037620 88 NAHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
.++...|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 55555566666666666555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=51.06 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (330)
..+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.+++..... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34445555566666666666665554322 23445555556666666666666666665443 22334555556666666
Q ss_pred CchHHHHHHHHHHHhc
Q 037620 305 GMEETAVVLAQKIDKL 320 (330)
Q Consensus 305 g~~~~a~~~~~~~~~~ 320 (330)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 6666666666655543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=7e-05 Score=52.12 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=56.5
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (330)
-.+...+...|++++|.++|+.+...++ -+..-|..|..++-..|++++|+..|......+ +.++..+..+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3344445566666666666666665532 244555556666666666666666666666555 45566666666666666
Q ss_pred CcHHHHHHHHHHHHhc
Q 037620 129 KRLSEALQFFGQSKKR 144 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~ 144 (330)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666655543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00033 Score=62.24 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=136.7
Q ss_pred cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 95 RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
+...++..|-+..+.. +.-...|..|...|...-+...|.+.|....+.+ ..+..........|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3666777666665554 3445678888888888888888888888887775 4466777788888888888888888733
Q ss_pred HHHHcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 175 EMRKCG-IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 175 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
..-+.. ...-...|....-.|...++...|..-|+...+ -.+.|...|..+..+|..+|++..|.++|.+....++.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 322211 001112233344456677788888888887765 34456778888888888888888888888887765433
Q ss_pred ccHHHHHHHHHHHhccCChhHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDI------GIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
.....|- ....-+..|.+.+|+..+...... +..--..++......+.-.|-..++..++++-
T Consensus 629 s~y~~fk-~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 629 SKYGRFK-EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 1111111 122335678888888877766531 11122344444444444455555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=53.90 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred cChHHHHHHHHHHHhCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 59 KNLLSMNEVYREMKDDGFE-PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (330)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444455555544444211 1222333344445555555555555544 2221 11222223334444455555555444
Q ss_pred HH
Q 037620 138 FG 139 (330)
Q Consensus 138 ~~ 139 (330)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-06 Score=53.90 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 037620 234 NAQVDMAMRIWDEMKARGVL-PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVV 312 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 312 (330)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+ ..+......+.+++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666655332 2334444466666677777777776666 2222 1223344445666667777777766
Q ss_pred HHHH
Q 037620 313 LAQK 316 (330)
Q Consensus 313 ~~~~ 316 (330)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.28 E-value=5e-05 Score=51.47 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PVMHMYSTLI 263 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 263 (330)
++..+...+.+.|++++|...+..+...... ......+..+..++...|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666666542111 111234445566666666666666666666553221 1133455555
Q ss_pred HHHhccCChhHHHHHHHHHHhc
Q 037620 264 NSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-05 Score=50.07 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...... +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 333344444444444444443331 1122333333344444444444444444433332 22223333333444444444
Q ss_pred HHHHHHHHHH
Q 037620 132 SEALQFFGQS 141 (330)
Q Consensus 132 ~~a~~~~~~~ 141 (330)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.9e-05 Score=49.53 Aligned_cols=76 Identities=13% Similarity=0.347 Sum_probs=49.5
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCC-CCChHHHHHHHHHHhccC--------cHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGF-EPDVVSYGIMINAHCSAK--------RYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 677777777776665532 233456666777766677777777776
Q ss_pred HHHHh
Q 037620 122 INGLG 126 (330)
Q Consensus 122 ~~~~~ 126 (330)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 66554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0013 Score=50.73 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH---HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY---GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (330)
+...+-.....+...|++++|.+.|+.+...... +...- -.++.++.+.+++++|...++++.+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333334455567789999999999999887322 22222 3566788899999999999999987641111122222
Q ss_pred HHHHHh--cc---------------Cc---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 121 LINGLG--SE---------------KR---LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 121 l~~~~~--~~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
.+.+.+ .. .+ ...|.+.|+.+++. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 222221 11 11 23455666666655 2332 1223333333333221
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG-TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
=...-..+..-|.+.|.+..|..-++.+.++.. .+........++.+|...|..++|.++...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 001111345567777777777777777765322 22234455666777777777777777666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-05 Score=50.00 Aligned_cols=79 Identities=14% Similarity=0.359 Sum_probs=67.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCC-CCChHHHHHHHHHHhhcc--------ChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRF-DPDIKSYTILLEGWGQQK--------NLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
..-|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999998876653 3456788999999999999999999
Q ss_pred HHHHHHhc
Q 037620 85 IMINAHCS 92 (330)
Q Consensus 85 ~ll~~~~~ 92 (330)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.8e-05 Score=54.09 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP--DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI 122 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (330)
...|..+...+...|++++|+..|+........+ ...++..+..++...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666666777777777777776542221 12356666667777777777777777766543 33444455555
Q ss_pred HHHh
Q 037620 123 NGLG 126 (330)
Q Consensus 123 ~~~~ 126 (330)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-05 Score=59.05 Aligned_cols=143 Identities=10% Similarity=0.066 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVR 229 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (330)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|..+|+...+. ...+...|..-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 356677777777777788888887777532 2234444444444233 45666688888877763 4445566677777
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 230 MFCYNAQVDMAMRIWDEMKARGVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 230 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
.+...++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+. -|+...+..+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 777777888888888777655 2222 246777777777777777777777777764 344333333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.7e-05 Score=51.42 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
....-.+...+...|++++|.++|+-+...+ +.+..-|..|..++-..|++++|+..|....... +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344456666778888888888888888776 6677778888888888888888888888888876 4577778888888
Q ss_pred HHhhCChhHHHHHHHHHHHc
Q 037620 160 YCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~ 179 (330)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877663
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.9e-05 Score=60.66 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=59.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
...+...|++++|++.|+..++.. +.+...|..+..++...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777776643 3355666666666777777777777777776653 23555666666677777777
Q ss_pred HHHHHHHHHHHhcC
Q 037620 97 DEAVELFREMEATN 110 (330)
Q Consensus 97 ~~a~~~~~~~~~~~ 110 (330)
++|+..|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=59.87 Aligned_cols=92 Identities=9% Similarity=-0.012 Sum_probs=73.5
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...+...|+++.|++.|.++++.. +-+...|..+..++...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667788888888888888775 3367777778888888888888888888888776 66777888888888888888
Q ss_pred HHHHHHHHHHHhcC
Q 037620 132 SEALQFFGQSKKRG 145 (330)
Q Consensus 132 ~~a~~~~~~~~~~~ 145 (330)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0003 Score=51.27 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777777888888888888888876533222 3567777888888888888888888887764 4456666677
Q ss_pred HHHHhccCcHHHHH
Q 037620 122 INGLGSEKRLSEAL 135 (330)
Q Consensus 122 ~~~~~~~~~~~~a~ 135 (330)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777766654433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00014 Score=57.41 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING-LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666665433 3334444444433 22244555566666666554 344555566666666
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNT---RTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666543 22222 3555555555566666666666665554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-06 Score=40.93 Aligned_cols=29 Identities=45% Similarity=0.762 Sum_probs=16.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRR 40 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 40 (330)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666555543
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0028 Score=48.84 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDI--GIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.+-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556788888888888888888863 223345566678888888999888888776554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=51.47 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 037620 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263 (330)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (330)
...+..+...+...|++++|...|++..+.....++ ...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345666777777888888888888887652222222 356777788888888888888888888776433 455666667
Q ss_pred HHHhccCChhHHHH
Q 037620 264 NSLCHEDKLDDACK 277 (330)
Q Consensus 264 ~~~~~~~~~~~a~~ 277 (330)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777666444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00093 Score=53.61 Aligned_cols=262 Identities=14% Similarity=0.012 Sum_probs=144.6
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
..+.+..++..|+..+...++..+. +..-|..-+..+...+++++++--.++-.+.. +-........-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 3455666777788888887777433 45555555556666677777666555544332 112223333334444444444
Q ss_pred HHHHHHHH---------------HHhcC-CCCChhhHHHH-HHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH--
Q 037620 133 EALQFFGQ---------------SKKRG-FEPEAPTYNAV-VGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH-- 193 (330)
Q Consensus 133 ~a~~~~~~---------------~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 193 (330)
+|.+.++. ..... -+|...++..+ ..++...|+.++|..+--...+.. ....+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 44433331 11111 11223334333 234556677787777666665542 1122222332
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCCchHHH-------------HHHHHHHHhCCCHHHHHHHHHHHHhC---CCCccHH
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY-------------EIVVRMFCYNAQVDMAMRIWDEMKAR---GVLPVMH 257 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 257 (330)
++.-.++.+.|...|++... ..|+...- ..-..-..+.|.+..|.+.|.+.+.. +..|+..
T Consensus 212 ~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 33345677777777777654 33332211 11123345678888888888887754 3456666
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-GQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.|.....+..+.|+..+|+.--++.++.+ +. ...+..-..++...++|++|.+-+++..+...++
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 67777777778888888888777776432 11 2233333445666778888888887777665553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.004 Score=49.89 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (330)
.+.+..+.-+...|+...|..+-.+.. .|+...|...+.+++..++|++...+... + + ++.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k---K-sPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS--K---K-SPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C---C-CCCChHHHHHH
Confidence 455566777788899988888877653 27888899999999999999988876543 1 1 34568999999
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
|.+.|+..+|..++.++ ++ ..-+..|.+.|++.+|.+..-
T Consensus 247 ~~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999888772 11 345566777777777765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00023 Score=51.67 Aligned_cols=96 Identities=11% Similarity=0.010 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
..+..+...+...|++++|...+++........+ ...++..+...+...|++++|...++........ ...++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 4445555566666777777777776654211111 1235666666777777777777777766654322 2344444444
Q ss_pred HHh-------ccCChhHHHHHHHHH
Q 037620 265 SLC-------HEDKLDDACKYFQEM 282 (330)
Q Consensus 265 ~~~-------~~~~~~~a~~~~~~~ 282 (330)
.+. ..|+++.|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 444 666666555544443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0011 Score=57.02 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
+...+..+...+...|++++|...+++... ..|+...|..+...+...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345555555555556666666666666655 33455566666666666666666666666665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.001 Score=57.13 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=97.8
Q ss_pred CCCChhhHHHHHHHHHhhC-----ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHhh
Q 037620 146 FEPEAPTYNAVVGAYCWSM-----RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG--------RTEEAYSVFKRMS 212 (330)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 212 (330)
.+.+...|...+++..... +...|..+|++..+.... ....+..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4567788888888755432 366889999999886422 3445555444443221 2234444444433
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
.......+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|...+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 322244455677777777777899999999999998876 57788999999999999999999999998854 45555
Q ss_pred hHH
Q 037620 293 LFS 295 (330)
Q Consensus 293 ~~~ 295 (330)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.1e-06 Score=40.25 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCC
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDG 75 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (330)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0014 Score=51.98 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-----CcH
Q 037620 117 IFCTLINGLGSE-KRLSEALQFFGQSKKR----GFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-----PNT 185 (330)
Q Consensus 117 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 185 (330)
++..+...|... |+++.|.+.|.+..+. +.+ .-...+..+...+.+.|++++|.++|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444555666666 7777777777665432 210 01234556667777777888888887777653221 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCCCc--hHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 037620 186 -RTYDIVLHHLIKAGRTEEAYSVFKRMSRK-PGTEPT--VSTYEIVVRMFCYN--AQVDMAMRIWDEMK 248 (330)
Q Consensus 186 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 248 (330)
..+...+-++...|++-.|...+++.... ++...+ ......|+.++-.. ..++.+..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 12333444566677788888888776642 222222 23445556655332 23444444444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.003 Score=45.09 Aligned_cols=135 Identities=8% Similarity=0.001 Sum_probs=88.7
Q ss_pred CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 037620 147 EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEI 226 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
.|++..-..|..+....|+..+|...|++...--..-|......+.++....+++..|...++.+.+-....-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45666666677777788888888888877766545556777777777777888888888888877653322223334456
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+.+.+...|.+..|+.-|+.....- |+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6777888888888888888877653 333333334445566776666655444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.6e-05 Score=45.38 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=25.2
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.|++++|+++|+++.... |-+..++..+..+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555554443 334444445555555555555555555555444
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00031 Score=51.45 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhh-----ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc----------------CcHHHHHHH
Q 037620 44 DIKSYTILLEGWGQ-----QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA----------------KRYDEAVEL 102 (330)
Q Consensus 44 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 102 (330)
+-.+|..+++.+.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55556666555543 356666666677777777777777777777765542 245678899
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
+++|...|+-||..++..+++.+.+.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999998877653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0003 Score=53.96 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=77.4
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
-..+.+++++|+..|.+.++.. |.|...|..-..+|++.|.++.|.+-.+..+..+ +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3556788888888888888876 6777777888888888888888888888777764 3345678888888888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
|.+.|++..+ +.|+..+|-.=+...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 8888887776 456666666555444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.1e-05 Score=44.60 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-chHHHHHHHHHHHhc
Q 037620 257 HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETAVVLAQKIDKL 320 (330)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 320 (330)
..|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|.+.+++..+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445555555555555555555555555443 224445555555555555 455555555554443
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=52.61 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHH----cCCCCc-
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKR----GFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRK----CGIGPN- 184 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~- 184 (330)
...|......|...|++++|.+.|.+.... +-+. -...|.....+|. ..++++|...+++... .| .|+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 345666677777778888888777765332 1110 1122333333333 3377777777766543 22 112
Q ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHhhcC---CCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----
Q 037620 185 -TRTYDIVLHHLIKA-GRTEEAYSVFKRMSRK---PGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL----- 253 (330)
Q Consensus 185 -~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 253 (330)
...+..+...|... |+++.|.+.|++..+- .+. ..-..++..+...+.+.|++++|.++|+++......
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 23455555566565 6777777777665431 110 011234455566666777777777777766543221
Q ss_pred ccHH-HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhh------HHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 254 PVMH-MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL------FSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 254 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.. .|-..+-++...||...|.+.+++.... .|+... ...|+.+ .+.||.+.....+.+..
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~--~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQ--DPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT--STTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHHHT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHHHc
Confidence 1121 1222333455566777777777666532 344422 2223333 23455555555444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=44.02 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHh
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK-RLSEALQFFGQSKK 143 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 143 (330)
..+|..+...+...|++++|+..|++.++.+ +.+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554 445555555555555555 45555555555544
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00031 Score=53.86 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
+....-++++..| +-..+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3455556666655 45667899999999999999884 4567777788889999999999998888887
Q ss_pred HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 037620 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231 (330)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (330)
..+. -...+|..|..+|...|++++|.+.|++..+ +.|+-.+|-.=+...
T Consensus 143 ~iDp-~yskay~RLG~A~~~~gk~~~A~~aykKaLe---ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 143 SIDP-HYSKAYGRLGLAYLALGKYEEAIEAYKKALE---LDPDNESYKSNLKIA 192 (304)
T ss_pred hcCh-HHHHHHHHHHHHHHccCcHHHHHHHHHhhhc---cCCCcHHHHHHHHHH
Confidence 7532 2457899999999999999999999998876 667666665555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=43.39 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=28.6
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+...|++++|.+.|+++.+.. |-+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555555555544 344555555555555555555555555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00049 Score=50.43 Aligned_cols=100 Identities=9% Similarity=0.196 Sum_probs=78.9
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-----------
Q 037620 65 NEVYREMKDDGFEPDVVSYGIMINAHCS-----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE----------- 128 (330)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 128 (330)
...|+..... ..+..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.|++++=+.
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445554322 3477777777777664 467788888889999999999999999999988552
Q ss_pred -----CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 129 -----KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 129 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
.+-+-|++++++|...|+.||..++..++..+.+.+..
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 24577999999999999999999999999999877643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0013 Score=49.68 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (330)
.+..+++|+.=. ...-+.++..+...+.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|+.
T Consensus 165 ~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 355566665433 3456777888888899999999999999987677888889999999999999999999998
Q ss_pred HHhcCCCCChHHHHHH-----HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 106 MEATNCKPSPHIFCTL-----INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 106 ~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
..+..-+.+..+++.+ ...|.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|.+.++.|.+..
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7765434554444443 445677888999999998888775 3455555555555556789999999999998864
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=43.73 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=52.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCC--hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC--CChHHHHHHHHHHh
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPD--IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE--PDVVSYGIMINAHC 91 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~ 91 (330)
+..++-..|+.++|+.+|+.....|.... ...+-.+.+.+...|++++|..++++....... -+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777766654433 234445556666777777777777766654211 01122222334556
Q ss_pred ccCcHHHHHHHHHHHH
Q 037620 92 SAKRYDEAVELFREME 107 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~ 107 (330)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777776665544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0028 Score=42.60 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=46.4
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC---ChHHHHHHHHHHhc
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMINAHCSAKRYDEAVELFREMEATNCKP---SPHIFCTLINGLGS 127 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 127 (330)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++..... |. +......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHH
Confidence 344555666666666666666554432 2234445556666666666666666655432 11 22222223334555
Q ss_pred cCcHHHHHHHHHHHH
Q 037620 128 EKRLSEALQFFGQSK 142 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~ 142 (330)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666666554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0024 Score=49.36 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCHHHHHHHHHHHHhCCCCccHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN---AQVDMAMRIWDEMKARGVLPVMHM 258 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 258 (330)
+-|...|..|...|...|+.+.|...|....+-.+.. ...+..+..++..+ ....++..+|+++...+.. |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 3478899999999999999999999999988744444 44455555544333 3466899999999988765 7788
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
...|...+...|++.+|...|+.|++.. |....+..++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 8888889999999999999999999754 33344444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=42.75 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=26.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 229 RMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..+...|++++|...|+++.+..+. +...+..+..++...|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544322 444444455555555555555555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=43.97 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=25.4
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (330)
+.|++++|+++|+.+.+.. |-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555554421 224444445555555555555555555555544
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0046 Score=47.82 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc---CcHHHHHHHHHHHHhcCCCCChhhH
Q 037620 77 EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE---KRLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
+-|...|-.|...|...|+...|..-|.+..+.. ++++..+..+..++... ....++..+++++...+ +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4467777777777777777777777777777664 56666666666554332 23456777777777664 3456666
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
..|...+...|++.+|...++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666777777777777777777777753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.011 Score=44.35 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC----hhhHHHHHHH
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP----GQLFSNLKQA 300 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 300 (330)
..++.-|-.+....+|...+..+.+. =...--.+.+.|.+.|.+..|..-++.+++.= |+ ......++.+
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHH
Confidence 34444444555555555555544432 01112224566778888888888888877642 22 2345567777
Q ss_pred HHhcCchHHHH
Q 037620 301 LRDEGMEETAV 311 (330)
Q Consensus 301 ~~~~g~~~~a~ 311 (330)
+.+.|..+.+.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 77777776443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.011 Score=44.30 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCC--CccHHHHHHHHHHHhccCChhHH
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGV--LPVMHMYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 275 (330)
.+...|.+.|.+..|..-++.+++.-+ .........++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 356677888888888888888776522 11224456667777777776643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.013 Score=44.55 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=127.7
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
..|...+.+.-+..+... ....+...-.....+..+++|++=. ....+.++.++...+.+.-...
T Consensus 134 ~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred hcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHH
Confidence 356666665555544431 1223333333334466666666533 3455678888888899999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHH-----HHHHhhCChhHHHHHHHHH
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV-----GAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~ 176 (330)
.+.++++.+.+.++.....|++.-.+.|+.+.|...|+...+..-..+..+++.++ ..|.-.+++..|...+.++
T Consensus 199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 199 AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhc
Confidence 99999998777889999999999999999999999999876654344444444443 3455677888888888888
Q ss_pred HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 037620 177 RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYE 225 (330)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (330)
...+. .++...|.-.-+..-.|+..+|.+.++.+.+ ..|...+-+
T Consensus 279 ~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~e 323 (366)
T KOG2796|consen 279 LRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHE 323 (366)
T ss_pred cccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhh
Confidence 77643 2555555555555667899999999999976 344444434
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0039 Score=44.03 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=41.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH-----hcCCCCChhh
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK-----KRGFEPEAPT 152 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 152 (330)
...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.+.|.++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566666777777777777777665 6667777777777777777777777776653 2466665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.021 Score=49.46 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHH-
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY- 259 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 259 (330)
++.+....-.+.+++.+.|.-++|.+.+-+... |. ..+..|...++|.+|.++-++..- |...+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tli 913 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLI 913 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHH
Confidence 344555666677777777777777766654322 21 345566666777777766554321 111111
Q ss_pred -------------HHHHHHHhccCChhHHHHHHHHHHh
Q 037620 260 -------------STLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 260 -------------~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..-|..+.+.|+.-+|.+++.+|.+
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1223445566777777777777754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0024 Score=49.64 Aligned_cols=99 Identities=9% Similarity=0.074 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PVMHMYSTLI 263 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 263 (330)
.|...+....+.|++++|...|+.+.+.....+ ....+..+..+|...|++++|...|+.+.+.... .....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444333445666666666666554211110 1234445556666666666666666666543211 1223333444
Q ss_pred HHHhccCChhHHHHHHHHHHhc
Q 037620 264 NSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
..+...|+.++|..+|+++++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.039 Score=48.19 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
.....+.+--+.-+...|+..+|.++-.+..- ||...|-.-+.+++..+++++-+++-+..+ ++.-|..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 34445666667777889999999998887654 788888888999999999998877765543 2345777
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
++.+|.+.|+.++|.+++.+.- |. . ....+|.+.|++.+|.++.-+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~--~l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVG--GL---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccC--Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999999987663 11 1 467788889998888776543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0024 Score=49.69 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=49.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChhhHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKKRG--FEPEAPTYNAVV 157 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 157 (330)
|...+....+.|++++|...|+.+.+.. |-+ +.++..+..+|...|++++|...|..+.+.- .+.....+..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3333333344566666666666665543 111 2355555666666666666666666665431 011223333344
Q ss_pred HHHHhhCChhHHHHHHHHHHHc
Q 037620 158 GAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.++...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0082 Score=42.35 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH-----hcCCCCChhhHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML-----DIGIRPPGQLFS 295 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 295 (330)
+...++..+...|+++.|..+.+.+....+. +...|..+|.+|...|+...|.+.|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3455666777888888888888888877654 77788888888888888888888888764 357778776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.014 Score=41.85 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=104.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-ccHHHH
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL-PVMHMY 259 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 259 (330)
+.|+...-..|..+....|+..+|...|++... ...-.|......+.++....+++..|...++++.+.+.. -++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 457777778899999999999999999999887 556667788888999999999999999999998876421 122345
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
-.+.+.+...|++.+|...|+...+. -|+...-......+.+.|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 56778999999999999999999865 456555555566677888776665444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00065 Score=41.36 Aligned_cols=57 Identities=7% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 229 RMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
..|.+.++++.|.++++.+...++. ++..+.....++.+.|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567778888888888887777554 66667777777788888888888888777653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0023 Score=51.58 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCCh----HHHHHHHHHHhhccChHHHHHHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDI----KSYTILLEGWGQQKNLLSMNEVY 68 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 68 (330)
-+++.|+......+|+..++.|.. |. ..|..|..+|.-.+++++|+++.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 478889999999999998887632 33 34666777777888888888764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=40.34 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=19.3
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.++...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444333332 3333333333333334444444444433333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0043 Score=42.16 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=28.5
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHHHHHHHHH
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMHMYSTLIN 264 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 264 (330)
....|+..+..+++.+|+.+|++..|.++.+.+.+. ++..+..+|..|++
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344556666666666666666666666666655432 44444555555555
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=43.73 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH 194 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (330)
..++..++.++++.|+.+....+++..-..++...... +. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566666666667766666666654432211110000 00 11123456888888888888
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
|+..|++..|.++++.+.+..+++.+..+|..|++-...
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888888888888888877877778888888875443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.02 Score=40.42 Aligned_cols=90 Identities=12% Similarity=0.026 Sum_probs=61.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
..-+...|++++|..+|+-+.-.+ +.+..-+..|..++-..+++++|...|......+. .|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 344556777788877777776655 55566667777777777777887777776655542 3444455566777777788
Q ss_pred hHHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRK 178 (330)
Q Consensus 167 ~~a~~~~~~~~~ 178 (330)
+.|...|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888777777766
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0091 Score=42.09 Aligned_cols=92 Identities=13% Similarity=-0.023 Sum_probs=75.9
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
...-+...|++++|..+|.-+...+.- +..-|..|..++-..+++++|+..|......+ +-|+..+.....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344556889999999999999887533 67777888888999999999999998876655 4566667778899999999
Q ss_pred HHHHHHHHHHHHhc
Q 037620 131 LSEALQFFGQSKKR 144 (330)
Q Consensus 131 ~~~a~~~~~~~~~~ 144 (330)
.+.|...|......
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998874
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.047 Score=43.27 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=62.1
Q ss_pred HHccCChHHHHHHHHHHhhCC--CCCChH------HHHHHHHHHhhcc-ChHHHHHHHHHHHhC--------CCCCC---
Q 037620 20 LCKSRHVERAQEVFDKMKKRR--FDPDIK------SYTILLEGWGQQK-NLLSMNEVYREMKDD--------GFEPD--- 79 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~--- 79 (330)
..+.|+++.|..++.+..... ..|+.. .|+.-...+ ..+ +++.|..++++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356788888888888776632 122221 122222323 334 666666665554332 11122
Q ss_pred --hHHHHHHHHHHhccCcHH---HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 80 --VVSYGIMINAHCSAKRYD---EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 80 --~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..++..++.++...+..+ +|.++++.+.... +-.+.++..-+..+.+.++.+.+.+.+.+|...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 233445555666555433 3444444443322 333445545555555566666666666666655
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.057 Score=44.03 Aligned_cols=169 Identities=9% Similarity=0.076 Sum_probs=97.2
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHh---hCChhHHHHHHHHHHHcCCCCcHHH
Q 037620 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRG---FEPEAPTYNAVVGAYCW---SMRINDAYRMMDEMRKCGIGPNTRT 187 (330)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (330)
+..+...++-+|....+++...++.+.+.... +..+...-....-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444556667888888888888888887652 11122222334445555 7888888888888665556677888
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH----HHHHHHHHH----HHhC
Q 037620 188 YDIVLHHLIKA---------GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV----DMAMRIWDE----MKAR 250 (330)
Q Consensus 188 ~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~----~~~~ 250 (330)
|..+...|-.. ...++|...|.+.-+ ..|+...--.++..+.-.|.. .+..++--. +.+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 88888776421 235667777776654 334443322233333333321 123333311 1122
Q ss_pred CC---CccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 251 GV---LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 251 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
|. ..+--.+..++.++.-.|+.++|.+..++|...
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22 123334456677777778888888888877754
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.059 Score=43.82 Aligned_cols=263 Identities=10% Similarity=0.003 Sum_probs=135.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
-..+.+..++..|+..+....+.. +-++.-|..-...+...++++++.--.+.-.+.... ........-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 344556667778888888777753 334455555555555566666665554444332100 111122222222222222
Q ss_pred HHHHHHHH---------------HHHhcCC-CCChHHHHHH-HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 97 DEAVELFR---------------EMEATNC-KPSPHIFCTL-INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 97 ~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
.+|.+.++ .+..... +|.-..+..+ ..++.-.|+.++|.+.--...+.. ..+......-..+
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccc
Confidence 22222222 2211111 1222333322 245566778888877776666653 1122222222223
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcHHHHHH---H----------HHHHHHcCCHHHHHHHHHHhhcC--CCCCCchHHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNTRTYDI---V----------LHHLIKAGRTEEAYSVFKRMSRK--PGTEPTVSTY 224 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l----------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 224 (330)
+.-.++.+.+...|++....+ |+...-.. . ..-..+.|.+..|.+.|.+.... .+..|+...|
T Consensus 213 ~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 334566777777777666533 33322111 1 12235678888888888877641 2334455566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
........+.|+..+|+.--++..+.+.. -...|..-..++...++|++|++-+++..+.
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666777788888888777776654221 1223333344556677788888877777654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.04 Score=47.87 Aligned_cols=239 Identities=13% Similarity=0.122 Sum_probs=152.1
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-CCCCChH--------HHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-GFEPDVV--------SYGIMINAHCSAKRYDEAVELFREMEATNCK 112 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (330)
.|.+..|..+.......-.++-|+..|-+...- |++.-.. .-.+=+.+| -|++++|.++|-++..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 478889999988888877888888887766543 3321111 111112222 478899999887776554
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKR-GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
..+..+.+.|++-.+.++++.=-.. .-.--...|+.+...+.....|++|.+.+..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 3456777888887777666431110 0011235688888888888888888888865322 1345
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
+.++.+..++++-+.+...+.+ +....-.+.+++.+.|.-++|.+.+-+... | ...+..|...++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe------~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE------DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc------ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 6777777888887777776655 444556788889999999998887754321 1 224567777888
Q ss_pred hhHHHHHHHHHHhcCCCCChhhH--------------HHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 272 LDDACKYFQEMLDIGIRPPGQLF--------------SNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
|.+|.++.++.. -|...++ ...+..+.++|+.=.|.+++.+|.+
T Consensus 894 W~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 888888776543 1222221 1234456677777777777766643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.069 Score=43.15 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=180.7
Q ss_pred HHHHHHHHH--ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHH--HhhccChHHHHHHHHHHHhCCCCCChHHH--HHH
Q 037620 13 FNRLIDTLC--KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG--WGQQKNLLSMNEVYREMKDDGFEPDVVSY--GIM 86 (330)
Q Consensus 13 ~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 86 (330)
|..|-..+. ..|+-..|.++-.+..+ -+..|....-.++.+ ..-.|+++.|.+-|+.|... |..... ..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 555555554 45677777777665543 133455555555543 34568999999999999853 333322 223
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCChhh--HHHHHHHHHh-
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG-FEPEAPT--YNAVVGAYCW- 162 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~- 162 (330)
.-...+.|..+.|.++-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 334456788888888888776654 4456677888888999999999999988765432 2333321 1222222211
Q ss_pred --hCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 163 --SMRINDAYRMMDEMRKCGIGPNTR-TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 163 --~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
..+...|...-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+-+ ..|.+.++ .+..+.+.|+.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia--~lY~~ar~gdt-- 310 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIA--LLYVRARSGDT-- 310 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHH--HHHHHhcCCCc--
Confidence 2345556655555444 344432 223345677888999999999988876 34444432 23334455543
Q ss_pred HHHHHHHHHhC-CCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCchHHHHHHHHH
Q 037620 240 AMRIWDEMKAR-GVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR-DEGMEETAVVLAQK 316 (330)
Q Consensus 240 a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~ 316 (330)
+..=+++.... .++| +..+...+.++....|++..|..--+.... ..|....|..+.+.-. ..||-.++..++-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333333221 1222 456666777777888888888877666653 3678888887777654 44888888888887
Q ss_pred HHhcCCCC
Q 037620 317 IDKLRKTP 324 (330)
Q Consensus 317 ~~~~~~~~ 324 (330)
..+.-..|
T Consensus 389 av~APrdP 396 (531)
T COG3898 389 AVKAPRDP 396 (531)
T ss_pred HhcCCCCC
Confidence 77665555
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.085 Score=43.08 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=37.4
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCC---CCCChHHHHHHHHHHhc---cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDG---FEPDVVSYGIMINAHCS---AKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
++-.|....+++..+++++.+...- +.-....-....-++.+ .|+.++|++++..+....-.+++.+|..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334566666666666666665431 11112222233334444 56666666666664433335566666655554
Q ss_pred H
Q 037620 125 L 125 (330)
Q Consensus 125 ~ 125 (330)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0021 Score=39.64 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=10.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
++.+...|...|++++|+..|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=39.78 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=8.4
Q ss_pred HHHHHHhccCcHHHHHHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~ 105 (330)
.+..++...|++++|++.+++
T Consensus 51 ~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 51 NLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333334444444444444333
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.19 Score=43.63 Aligned_cols=253 Identities=10% Similarity=0.119 Sum_probs=130.0
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHH---------HHhhCCCCCChHHHHHHHHHHhhccCh--HHHHHHHHHHHhC
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFD---------KMKKRRFDPDIKSYTILLEGWGQQKNL--LSMNEVYREMKDD 74 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~ 74 (330)
+.|....+.+-+..|...|.+++|.++-- .+... ..+...++..=.+|.+..+. -+.+.-+++++++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 44555556666677888888888865421 11110 01222334444555555443 3444456677777
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH---------h-c
Q 037620 75 GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK---------K-R 144 (330)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~-~ 144 (330)
|-.|+... +...++-+|.+.+|-++|.+--.. +..+..|.....++.|.+++..-. + .
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 77777754 345566778888888888653211 223444444444555544442110 0 0
Q ss_pred CCCCChhhHHHHHHHHHhhCChhHHHHHHH------HHHHcCCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 037620 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMD------EMRKCGIG---PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP 215 (330)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (330)
....+..--.+...++...|+.++|..+.- -+.+.+-+ .+..+...+...+.+...+.-|-++|.++-.
T Consensus 698 ~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-- 775 (1081)
T KOG1538|consen 698 DWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-- 775 (1081)
T ss_pred HHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--
Confidence 001111111233444555666666655421 11111111 1233444444455556667777777776633
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH-----------HHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 216 GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM-----------HMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...+++.....++|++|..+-+..-+. .|+. .-|...-++|.+.|+-.+|..+++++..
T Consensus 776 --------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 --------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred --------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 135667777788888888777665432 2221 1123333455666666666666666654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.09 Score=45.06 Aligned_cols=166 Identities=18% Similarity=0.193 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNT-----RTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
+..++....-.||-+.+++.+....+.+ +.-.. -.|...+..++. ....+.|.+++..+.+ .-|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~---~yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK---RYPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH---hCCCcH
Confidence 4455566667789999999888776532 22111 123333333332 4567889999999976 334544
Q ss_pred HHH-HHHHHHHhCCCHHHHHHHHHHHHhCC---CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 223 TYE-IVVRMFCYNAQVDMAMRIWDEMKARG---VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 223 ~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
.|. .-.+.+...|+.++|.+.|++..... .......+-.+..++...++|++|...|.++.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 443 34566778899999999999765321 11223445566777888999999999999999754 44566666554
Q ss_pred HH-HHhcCch-------HHHHHHHHHHHhcCC
Q 037620 299 QA-LRDEGME-------ETAVVLAQKIDKLRK 322 (330)
Q Consensus 299 ~~-~~~~g~~-------~~a~~~~~~~~~~~~ 322 (330)
-+ +...|+. ++|.++++++.....
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 43 4467777 889999988875443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.028 Score=46.57 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHH
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV----STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHM 258 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 258 (330)
.+...++.+..+|...|++++|+..|++..+ ..|+. .+|..+..+|...|+.++|...+++..+.+ .+ .
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 4567888899999999999999999999876 34443 358889999999999999999999988752 11 1
Q ss_pred HHHHHH--HHhccCChhHHHHHHHHHHhcCC
Q 037620 259 YSTLIN--SLCHEDKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 259 ~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 287 (330)
|..+.. .+....+.++..++++.+...|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 321111 11122233456666666666553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.14 Score=39.93 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=22.7
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQS 141 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (330)
...|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444444444444444433 233334444444444455555454444444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.029 Score=46.47 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSP---HIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+...++.+..+|...|++++|+..|++.++.+ |-+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556666666666666666666666666554 2222 23666666666666666666666666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.089 Score=37.58 Aligned_cols=145 Identities=14% Similarity=0.230 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.+.++.+.+.+++|+...+..++..+.+.|++.....++. .++-+|.......+-. ..+.+..+.++--+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHH--hHccChHHHHHHHHHHH
Confidence 4455666677788888888888888888888776666555 3444555443333322 22233444444444443
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh----cCCCCC
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK----LRKTPL 325 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 325 (330)
. . ...+..+++.+...|++-+|+++.+...... ......++.+..+.+|...-..+++-+.. ...+|.
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~~~~~~~ 158 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEERNLRLRGSPS 158 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHhhcCCCC
Confidence 2 0 0136667777888888888888887753221 12224466666677776665555555544 335566
Q ss_pred CcCC
Q 037620 326 VDRG 329 (330)
Q Consensus 326 ~~~~ 329 (330)
+.+|
T Consensus 159 f~~~ 162 (167)
T PF07035_consen 159 FTKG 162 (167)
T ss_pred CCcc
Confidence 6554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.18 Score=40.87 Aligned_cols=273 Identities=13% Similarity=0.116 Sum_probs=131.6
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHh--hccChHHHHHHHHHHHhCCCCCChHHHHHHHH--HHhccCcHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWG--QQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN--AHCSAKRYDEAV 100 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~ 100 (330)
....+.+.|..-+.. ..|..|-.++. -.|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344455555544331 23444444433 345666666655544322 2234333333443 233457777777
Q ss_pred HHHHHHHhcCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 101 ELFREMEATNCKPSPH--IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
+-|+.|... |... -...|.-..-+.|..+.|.++-+.....- +.-...+...+...+..|+++.|+++++.-..
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777777642 1111 11222233345677777777766665542 22344566677777777777777777766544
Q ss_pred cC-CCCcHH--HHHHHHHHHH---HcCCHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 179 CG-IGPNTR--TYDIVLHHLI---KAGRTEEAYSVFKRMSRKPGTEPTVST-YEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 179 ~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
.. +.++.. .-..|+.+-. -..+...|...-.+..+ ..|+... -.....++.+.|+..++-.+++.+-+..
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 22 222321 1112221111 12234444444433322 3333221 1233456677777777777777776665
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI-GIRP-PGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+.|+. +..+ .+.+.|+ .+..-+++.... .++| +......+.++-...|++..|..-.+..
T Consensus 294 PHP~i--a~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 294 PHPDI--ALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred CChHH--HHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44432 2222 2233443 333333333221 1223 3445555666666677766655444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.32 Score=42.89 Aligned_cols=301 Identities=10% Similarity=0.069 Sum_probs=166.6
Q ss_pred CCCCCCCChhhHHH-----HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC---hHHHHHHHHHHHh
Q 037620 2 DKFGLKQELPDFNR-----LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN---LLSMNEVYREMKD 73 (330)
Q Consensus 2 ~~~g~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 73 (330)
.+.|++.+..-|.. +|.-+...+.+..|+++-..+...-.. ....|.....-+.+..+ -+.+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45678887777655 466677788899999988777542211 25666666666666532 2223333333332
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC----
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATN----CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG---- 145 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 145 (330)
. . -....|..+..-....|+.+.|..+++.=...+ +-.+-.-+...+.-+...|+.+....++-.+...-
T Consensus 503 ~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~ 580 (829)
T KOG2280|consen 503 K-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS 580 (829)
T ss_pred c-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 2 2 345667777777778899998888775422111 00122233445556667777777666665554321
Q ss_pred -------CCCChhhHHHHHHH--------HHhhCChhHHHHHHH--HHH----HcCCCCcHHHHHHHHHHHHHcCC----
Q 037620 146 -------FEPEAPTYNAVVGA--------YCWSMRINDAYRMMD--EMR----KCGIGPNTRTYDIVLHHLIKAGR---- 200 (330)
Q Consensus 146 -------~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~~~---- 200 (330)
.+.....|.-+++- +...++-.++...+. ... ..+..|+ ......++.+...
T Consensus 581 l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 581 LFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFE 657 (829)
T ss_pred HHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhH
Confidence 11111222222210 011111111111111 100 0111222 2223333333322
Q ss_pred ------HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 201 ------TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 201 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
..+-+.+.+.+..+.+..-...+.+--+.-+...|+..+|.++-.+++ .|+...|-.-+.+++..++|++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHH
Confidence 112233333343333433333445556666778888889988877664 4688888888999999999988
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
-.++-+... ++.-|.-.+.+|.+.|+.++|.+++-+..
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 777665543 24556678899999999999998886654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0099 Score=48.09 Aligned_cols=269 Identities=16% Similarity=0.110 Sum_probs=174.6
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHH----HHHHHHHHhccCcHHHHHHHHHHH--Hhc--C-CCCChHHHHHHHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVS----YGIMINAHCSAKRYDEAVELFREM--EAT--N-CKPSPHIFCTLIN 123 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~--~~~--~-~~~~~~~~~~l~~ 123 (330)
.-+++.|+......+|+..++.|.. |..+ |..|.++|.-.+++++|+++...= ... | -.-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999988743 5443 555667777788888888875431 111 1 0112233445666
Q ss_pred HHhccCcHHHHHHHHHH----HHhcCC-CCChhhHHHHHHHHHhhCC--------------------hhHHHHHHHHH--
Q 037620 124 GLGSEKRLSEALQFFGQ----SKKRGF-EPEAPTYNAVVGAYCWSMR--------------------INDAYRMMDEM-- 176 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~-- 176 (330)
.+--.|.+++|.-+..+ ..+.|- ......+-.+...|...|+ ++.|.++|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 66677888888766543 233331 1233455567777765543 12233333321
Q ss_pred --HHcCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 177 --RKCGIG-PNTRTYDIVLHHLIKAGRTEEAYSVFKRMS---RKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 177 --~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.+.|-. .-...|..|...|.-.|+++.|+...+.-. +..|.+. ....+..+..++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111110 112345556666667788999987766432 2234332 345678888999999999999999987543
Q ss_pred ----CCC-CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 250 ----RGV-LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG-----IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 250 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.|- .....+..+|...|.-..++++|+.++.+-+... ..-....+..|..++-..|..++|..+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 332 2234566778888888899999999999988742 334467899999999999999999999988875
Q ss_pred cCC
Q 037620 320 LRK 322 (330)
Q Consensus 320 ~~~ 322 (330)
...
T Consensus 344 ~s~ 346 (639)
T KOG1130|consen 344 SSL 346 (639)
T ss_pred HHH
Confidence 443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.074 Score=43.16 Aligned_cols=61 Identities=11% Similarity=-0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
++..+..+|.+.+++..|++........+ ++|+...-.-..++...|+++.|...|+.+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34455555555555555555555555553 34444444445555555566666655555555
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.047 Score=36.73 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=52.7
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHH---HHHHHHHHHhcc
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMH---MYSTLINSLCHE 269 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---~~~~l~~~~~~~ 269 (330)
++...|+.+.|++.|.+... -.+.....||.-.+++.-.|+.++|++=+++..+. |.. +.. .|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 45566777777777776654 23334556677777777777777777766666654 222 221 222223345556
Q ss_pred CChhHHHHHHHHHHhcC
Q 037620 270 DKLDDACKYFQEMLDIG 286 (330)
Q Consensus 270 ~~~~~a~~~~~~~~~~~ 286 (330)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66677776666666555
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.084 Score=44.62 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=81.3
Q ss_pred HhccCcHHHHHHHHHH-HHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 90 HCSAKRYDEAVELFRE-MEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
..-.++++.+.++... -.-..+| ....+.++..+.+.|-.+.|+++.. |+. .-.....+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 3445666666555541 1111112 3345666666777777777766643 221 12233456677777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
|.++.++. .+...|..|.......|+++-|...|.+... +..|+-.|...|+.+...++.+...
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 66554322 2556777777777777777777777776543 3455556667777766666666655
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
..|- ++....++...|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 44444555556776666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.35 Score=43.27 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
...+.+.|++++|...|-+-+..- .| ..++.-|........-..+++.+.+.|+ .+...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 334445566666655554433221 11 1233444455555555555555555553 2444555566666666666
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
+...+..+... .|.. ..-....+..+.+.+-.++|..+-.+... +......+ +-..+++++|.+.+..
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 55555444332 1111 11123344455555555555554444322 22222222 2344556666665554
Q ss_pred H
Q 037620 247 M 247 (330)
Q Consensus 247 ~ 247 (330)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 3
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.071 Score=43.27 Aligned_cols=97 Identities=10% Similarity=-0.018 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ-LFSNLKQA 300 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 300 (330)
.+++.+.-++.+.+++..|+..-...+..+.. |......-.+++...|+++.|+..|+++++. .|+.. .-..++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 35667778888888999999888888887654 7777777778888899999999999998865 44434 33444444
Q ss_pred HHhcCchH-HHHHHHHHHHhcC
Q 037620 301 LRDEGMEE-TAVVLAQKIDKLR 321 (330)
Q Consensus 301 ~~~~g~~~-~a~~~~~~~~~~~ 321 (330)
-.+..... +..++|..|...-
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 44444433 3467777776443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.09 Score=40.43 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=36.2
Q ss_pred ccChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHH
Q 037620 58 QKNLLSMNEVYREMKDDGF--EPDVVSYGIMINAHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
.|++..|...|...++... .-....+..|..++...|++++|..+|..+.+.- .+--+..+..|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555544444311 1112223334444445555555554444444321 01112334444444444444444
Q ss_pred HHHHHHHHHhc
Q 037620 134 ALQFFGQSKKR 144 (330)
Q Consensus 134 a~~~~~~~~~~ 144 (330)
|..+|+++.+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.13 Score=43.62 Aligned_cols=157 Identities=10% Similarity=0.074 Sum_probs=86.2
Q ss_pred HHHccCChHHHHHHHH--HHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 19 TLCKSRHVERAQEVFD--KMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
...-.++++++.++.. .+.. .+| ....+.++.-+.+.|..+.|+++..+ +. .-.....+.|+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3445677777666554 2221 122 34466677777777777777765432 21 123344566777
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
+.|.++.++ ..+...|..|.....+.|+++-|.+.+.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777665433 23566777777777777777777777776542 345555666777777766666666
Q ss_pred HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 177 RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
...| -++....++.-.|+.++..+++.+.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5554 2344455555667777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.37 Score=41.40 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=104.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHH-
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEA------PTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDI- 190 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 190 (330)
+....=.|+-+.+++.+.+..+.+---.+ -.|+..+..++. ..+.+.|.++++.+.+. -|+...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 44445578889999988887654311111 123333333333 34677899999999886 356555443
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH-HHh
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPGT--EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN-SLC 267 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 267 (330)
-.+.+...|++++|.+.|+........ ......+-.+.-.+.-.++|++|...|..+.+..-- +...|..+.. ++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence 345677899999999999976531111 123344556677788899999999999999886433 4455554443 445
Q ss_pred ccCCh-------hHHHHHHHHHH
Q 037620 268 HEDKL-------DDACKYFQEML 283 (330)
Q Consensus 268 ~~~~~-------~~a~~~~~~~~ 283 (330)
..++. ++|..+|.+..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHH
Confidence 67777 88888888765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.083 Score=45.64 Aligned_cols=249 Identities=13% Similarity=0.166 Sum_probs=136.5
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHH---------HHHHhCCCCCChHHHHHHHHHHhccCc--HHHHHHHHHHHHhcCC
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVY---------REMKDDGFEPDVVSYGIMINAHCSAKR--YDEAVELFREMEATNC 111 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 111 (330)
|....+.+-+..|...|.+++|.++- +.+... ..+.-.++..=.+|.+..+ +-+.+.-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 33444555556677777777766532 111111 1122233444455655544 3344555666777776
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH------------HHHHH-
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM------------DEMRK- 178 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~~- 178 (330)
.|+... +...++-.|.+.+|-++|.+--.. +..+.+|...+.++.|.+++ ++--+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 676654 445666788888888888754222 12233333333344333333 22111
Q ss_pred -cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH---------hhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 179 -CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKR---------MSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 179 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
.++... .+....+...|+.++|..+.-. +.. .-...+..+...+...+.+...+..|-++|..|-
T Consensus 700 Ar~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r-kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 700 ARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIAR-KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred hhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHh-hcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 111111 1223344455666665543321 111 0112334455555666666777888888888764
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh-----------hhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG-----------QLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+ ...+++.....++|++|..+.++.-+. .|+. .-|...-++|.++|+-.+|.++++++
T Consensus 775 D---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 775 D---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred c---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3 334667788999999999998876542 2222 23455567888999999999999887
Q ss_pred HhcC
Q 037620 318 DKLR 321 (330)
Q Consensus 318 ~~~~ 321 (330)
....
T Consensus 844 tnna 847 (1081)
T KOG1538|consen 844 TNNA 847 (1081)
T ss_pred hhhh
Confidence 6543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.06 Score=41.35 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=40.3
Q ss_pred hCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHhcCchH
Q 037620 233 YNAQVDMAMRIWDEMKARGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEMLDI-GIRP-PGQLFSNLKQALRDEGMEE 308 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 308 (330)
+.|++..|..-|...++..+. -.+..+..|..++...|++++|...|..+.+. +-.| -+..+..|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555555543211 11223444555555555555555555555432 1111 1234444555555555555
Q ss_pred HHHHHHHHHHh
Q 037620 309 TAVVLAQKIDK 319 (330)
Q Consensus 309 ~a~~~~~~~~~ 319 (330)
+|..+|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.34 Score=40.24 Aligned_cols=81 Identities=10% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
-|.|+..|-.|+..+..+|..++..+++++|.. ..|--..+|..-+++-...+++...+.+|.+.+... .+...|..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~l 114 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWML 114 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHH
Confidence 466788899999999999999999999999987 345556778888887777888999999998888763 34555555
Q ss_pred HHHH
Q 037620 86 MINA 89 (330)
Q Consensus 86 ll~~ 89 (330)
.+..
T Consensus 115 Yl~Y 118 (660)
T COG5107 115 YLEY 118 (660)
T ss_pred HHHH
Confidence 4443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=34.95 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
..+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.=+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444455444444554444322 3444444455555555555555555555444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.22 Score=37.69 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=11.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
|.....+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3333444545555555555444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.16 Score=35.07 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (330)
.....+.|++++|.+.|+.+..+....+ ....-..|+.+|.+.++++.|...++++++..+.....-|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3444566777777777777765333222 2234556677777777777777777777766543222334444444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.35 Score=38.54 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=91.5
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH----HHHHHHHhccCcHH
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY----GIMINAHCSAKRYD 97 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~ 97 (330)
..|++.+|-..++.+++ ..|.|..++...=.+|...|+...-...+++.... -.++...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44666666666777766 45667777777777777777777777777776654 12333222 23334455677777
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP---EAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
+|.+.-++..+.+ +-|.....++...+-..|++.++.+++.+-...--.. -..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7877777777766 6666666777777777777777777766543221000 00111112223445577777877776
Q ss_pred HH
Q 037620 175 EM 176 (330)
Q Consensus 175 ~~ 176 (330)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.38 Score=38.83 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM 230 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (330)
.+.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++-..+-.. + -++.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k-----KsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K-----KSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C-----CCCCChHHHHHH
Confidence 34555567777888888887775554 2 36889999999999999999988876542 1 234668889999
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
|.+.|+..+|..+... +. +..-+..|.+.|++.+|.+...+.
T Consensus 247 ~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999998877 12 355678889999999998765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.17 Score=34.22 Aligned_cols=92 Identities=11% Similarity=-0.031 Sum_probs=64.7
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHhccC
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSP---HIFCTLINGLGSEK 129 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 129 (330)
-+++..|+.+.|++.|.+.+..- +-....||.-..++.-.|+.++|+.-+++..+..-+.+. ..|.--...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34667788888888888887763 447788888888888888888888888877764312222 22333345567778
Q ss_pred cHHHHHHHHHHHHhcC
Q 037620 130 RLSEALQFFGQSKKRG 145 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~ 145 (330)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888887777766
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.021 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.116 Sum_probs=11.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (330)
..+...|.+.|++++|.++|+++.+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.21 Score=34.81 Aligned_cols=18 Identities=33% Similarity=0.174 Sum_probs=6.9
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 037620 192 LHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~ 209 (330)
+..|.+.+.++++..++.
T Consensus 76 ~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 76 GKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 333333333333333333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.18 Score=40.06 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=89.7
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc---CCCCChHHHHHHHHHHhccCcHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT---NCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
..|+..+|-..++++++. .+.|...+...=.+|.-.|+.+.....++++... ++|-.+.+...+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345666666677777665 3446666666666777777777777777776644 222222333334445566778888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 037620 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC---GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKR 210 (330)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (330)
|++.-++..+.+ +.|...-.+....+...+++.++.+...+-... +--.-...|--..-.+...+.++.|+.+|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888777777665 445666667777777777777777766543221 0000011122222334455777788777765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.026 Score=30.15 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=9.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.+...|...|++++|+++|+++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.61 Score=38.82 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHH----HHHHh---CCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHH--HHh
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVV----RMFCY---NAQVDMAMRIWDEMKARGVLPV----MHMYSTLIN--SLC 267 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~--~~~ 267 (330)
-++|+.+++.+.+- .+-|...-+.+. ..|.+ ...+.+-..+-+-+.+.|+.|- ...-|.|.+ -+.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 67777887777652 112222222222 22222 2334444444445556676653 233344433 345
Q ss_pred ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 268 HEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
..|++.++.-.-.-+. .+.|++.+|..+.-++....++++|..++.+++.
T Consensus 474 sqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred hcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 6888888876655555 4578999999999999999999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.49 Score=37.56 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred hhccChHHHHHHHHHHHhCCCCCChHHHHH-------HHHHHhccC-cHHHHHHHHHHHHhc--------CCCCC-----
Q 037620 56 GQQKNLLSMNEVYREMKDDGFEPDVVSYGI-------MINAHCSAK-RYDEAVELFREMEAT--------NCKPS----- 114 (330)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 114 (330)
.+.|+.+.|..++.+........++..... ........+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888888888888765421112222212 222233344 666666666654332 11111
Q ss_pred hHHHHHHHHHHhccCcHHH---HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 115 PHIFCTLINGLGSEKRLSE---ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
..++..++.+|...+..+. |..+++.+... .+..+.++..-+..+.+.++.+.+.+++..|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1344455555655555433 33344444332 1222334444455555556666666666666654
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.088 Score=40.64 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHhh-----ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC----------------cHHHHH
Q 037620 42 DPDIKSYTILLEGWGQ-----QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK----------------RYDEAV 100 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 100 (330)
..|-.+|.+.+..+.. .+.++-....+..|.+-|+..|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3466666666665543 3556666667777777888888888888877665432 122345
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 101 ELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
+++++|...|+.||..+-..|++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 555555555555555555555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.73 Score=38.40 Aligned_cols=128 Identities=15% Similarity=0.227 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhH-HHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATN-CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTY-NAVVGA 159 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 159 (330)
.|...++...+..-.+.|..+|-++.+.+ +.++..++++++..++ .|+...|..+|+-=... .||...| +-.+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34445555555555666666666666555 4455556666665444 35555566665543333 2233322 334445
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
+...++-+.|..+|+....+ +..+ ...|..+|..-..-|+...+..+=+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55556666666666643322 1111 34555666655566666655555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.13 Score=40.19 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
++..++..+...|+.+.+...++++.. -.+-+...|..++.+|.+.|+...|+..|+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 444444444444445555444444443 22233444444555555555555555444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.8 Score=38.44 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHH---hcCCCCChHHHHHHHHHHhc---------cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 96 YDEAVELFREME---ATNCKPSPHIFCTLINGLGS---------EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 96 ~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
.+.|+.+|.+.. +.+ |.....|..+..++.. ..+..+|.+...+..+.+ +.|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456777777766 322 2234444444333221 112233444444444443 23444444444444444
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
++++.+...|++....+. ....+|......+.-.|+.++|.+.+++.
T Consensus 352 ~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 352 GQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555554444321 12223333333334445555555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.11 Score=40.06 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCChhhHHHHHHHHHcc-----CChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhc----------------cChHHHH
Q 037620 7 KQELPDFNRLIDTLCKS-----RHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQ----------------KNLLSMN 65 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 65 (330)
+-|..+|-..+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+. .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34566777777777543 56777777888999999999999999999876543 2335689
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 66 EVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
+++++|...|+-||..+-..|++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999887753
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.7 Score=36.94 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYD 189 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~ 189 (330)
.+.++++.+.+.|+++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4445555555555554444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.7 Score=37.32 Aligned_cols=229 Identities=11% Similarity=0.115 Sum_probs=115.5
Q ss_pred HHccCChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC--CCCCCh---HHHHHHHHHHhc
Q 037620 20 LCKSRHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD--GFEPDV---VSYGIMINAHCS 92 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~ll~~~~~ 92 (330)
+....+.++|+..+.....+- ...-..+|..+..+..+.|.+.+++..--.-+.. ...... ..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776665531 1112234556666677777766655432211111 111111 122333333433
Q ss_pred cCcHHHHHHHHHHHHhc-CCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhh
Q 037620 93 AKRYDEAVELFREMEAT-NCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKKRGF-----EPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 163 (330)
..++.+++.+-..-... |..|. -.....+..++...+.++++++.|+...+... .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33444444443332221 22221 12333455666777777888877777654321 12234577777777777
Q ss_pred CChhHHHHHHHHHHH----cCCCCcHHHH-----HHHHHHHHHcCCHHHHHHHHHHhhcC---CCCCC-chHHHHHHHHH
Q 037620 164 MRINDAYRMMDEMRK----CGIGPNTRTY-----DIVLHHLIKAGRTEEAYSVFKRMSRK---PGTEP-TVSTYEIVVRM 230 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~ 230 (330)
.|+++|.-+..+..+ .++..=..-| ..|.-++...|....|.+..++..+- .|..+ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 788877766655433 2221111112 22333555667777777776665431 12221 23334556667
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~ 248 (330)
|...|+.+.|+.-|+...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 777777777776666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.89 Score=37.93 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHH------HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH--HHh
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKS------YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN--AHC 91 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~ 91 (330)
+-+.+++.+|..+|.++.+.. ..+... -+.++++|.. ++.+.....+..+.+. .| ...|-.+.. .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 456788888888888887742 223222 2345566543 4566666666666554 22 222333332 344
Q ss_pred ccCcHHHHHHHHHHHHhc--CCCC------------ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC----CCChhhH
Q 037620 92 SAKRYDEAVELFREMEAT--NCKP------------SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF----EPEAPTY 153 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 153 (330)
+.+++.+|++.+..-.+. +..+ +-..=+..+.++...|.+.++..+++++...=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 677888888777665543 2111 111124456777788888888888777765432 3567777
Q ss_pred HHHHHHHHh
Q 037620 154 NAVVGAYCW 162 (330)
Q Consensus 154 ~~l~~~~~~ 162 (330)
+.++-.+.+
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 776655554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.34 Score=32.87 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=65.3
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
+.-.|.+++..++....... .+..-+|-+|.-....-+-+-..++++..-+. .|... .|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHH
Confidence 34457788888888777663 24555555554444444444444444443221 12111 1222222
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...+-.+ ..........+......|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2222111 1223334445556666666666666666665432 456666666666777777777777777766666
Q ss_pred CC
Q 037620 180 GI 181 (330)
Q Consensus 180 ~~ 181 (330)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 64
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.69 Score=36.25 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=24.3
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
....|++.+|...|....... +-+...--.+..+|...|+.+.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344455555555555544442 122333444455555555555555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=1 Score=37.90 Aligned_cols=82 Identities=12% Similarity=-0.019 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQ 140 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (330)
..+|.++-+...+.+ +-|......+..+..-.++++.|..+|++....+ |....+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555554 2355555555555555555666666666665554 33444444444444555666666666665
Q ss_pred HHhc
Q 037620 141 SKKR 144 (330)
Q Consensus 141 ~~~~ 144 (330)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.41 Score=33.38 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (330)
...++..+...+.+..+..+++.+...+. .+....+.++..|++.+ ..+....++. . .+......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 34566666667778888888888777653 56677778888887653 3444444442 1 12223345677788
Q ss_pred hCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 233 YNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
+.+-++++..++.++.. +...+..+... ++.+.|.+++.+- .+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 88888888888876532 22233333333 7788888877652 256677777766653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.19 Score=39.33 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH-----cCCCCcHHHHH
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK-----CGIGPNTRTYD 189 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 189 (330)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456666777777777777777777777664 45666777777777777777777777776644 56667666665
Q ss_pred HHHHH
Q 037620 190 IVLHH 194 (330)
Q Consensus 190 ~l~~~ 194 (330)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.71 Score=35.40 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 264 NSLCHEDKLDDACKYFQEMLDIGIRPP---GQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
+-|.+.|.+..|..-+++|++. .+-+ ...+..+..+|.+.|-.++|.+.-+-
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3444555555555555555543 1111 22233344445555555554444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.3 Score=38.22 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PVMHMYSTLI 263 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 263 (330)
.+|..-+.--...|+.+.+.-++++..- ....=...|-..+.-....|+.+-|..++....+--.+ |....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3444444444455555555555555433 11111122223333333335555555555444433222 2222222222
Q ss_pred HHHhccCChhHHHHHHHHHHh
Q 037620 264 NSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.-..|+++.|..+++...+
T Consensus 376 --~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIES 394 (577)
T ss_pred --HHhhccHHHHHHHHHHHHh
Confidence 2234566666666666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.7 Score=39.20 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+.+.|++++|...|-+-+.. +.|. .++.-|.......+-..+++.+.+.| -.+.+.-..|+.+|.+.++.++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHH
Confidence 34456666665555544432 1221 12333444455555555555555555 33444445566666666666555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.++.+... .|.. ..-....+..+.+.+-.++|..+-..... +......++ -..+++++|++.++.+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 55554433 2111 11123334444444444444443333221 222333332 2345566666665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.5 Score=37.16 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=26.8
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
..++.+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33344455555555555555443211 12234445555555555555555555554
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.7 Score=33.11 Aligned_cols=133 Identities=12% Similarity=0.042 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChH-HHHHH-
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV-SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPH-IFCTL- 121 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 121 (330)
...|...+. +.+.+..++|+.-|.++.+.|...-+. ............|+-..|...|+++-.....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 344555666666666666654331111 11122334455666666666666665443222221 11111
Q ss_pred -HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 122 -INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 122 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
.-.+...|.++......+.+...+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 122345666666666666555544344444445555556666666666666666654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.98 Score=34.66 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=85.7
Q ss_pred HHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh---
Q 037620 89 AHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS--- 163 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 163 (330)
.-.+.|++++|.+.|+.+.... -+-...+.-.++-++.+.++++.|...+++..+.-......-|...|.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 3445677777777777776542 12234445555666677777777777777766553222223344444444321
Q ss_pred ----CChhHHHH---HHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 037620 164 ----MRINDAYR---MMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 164 ----~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (330)
+|...+.. -|+.++.. . |++. =...|..-...+... =...=..+.+.|.+.|.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r-y-PnS~-------------Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR-Y-PNSR-------------YAPDAKARIVKLNDA-----LAGHEMAIARYYLKRGA 182 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH-C-CCCc-------------chhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcC
Confidence 22222222 22333322 1 1210 001111111111100 00001245566777788
Q ss_pred HHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 237 VDMAMRIWDEMKARGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+..|..-++++.+.-.. -....+-.+..+|...|-.++|.+.-+-+.
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88777777777765111 122345556667777777777776655554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.37 Score=35.21 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666655432222 2334445555555666666655555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.8 Score=36.89 Aligned_cols=180 Identities=9% Similarity=0.051 Sum_probs=123.5
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 77 EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV 156 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (330)
..|.....+++..+..+..+.-+..+..+|...| .+...|..++.+|... ..+.-..+++++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4577777888888888888888888888888765 5677788888888887 557778888888877542 44444455
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIGP-----NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (330)
...|-+ ++.+.+...|.++...-++- -...|..+... -..+.+....+...+..+.|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 77788888887776542220 11244444432 24567777777777777666666666777777888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 232 CYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
....++.+|++++..+.+++-+ |.-.-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 8888999999999887776544 4434444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.84 Score=32.74 Aligned_cols=29 Identities=3% Similarity=0.091 Sum_probs=13.8
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
+..+.+.+++|+...+..++..+.+.|++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344444445555555555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.1 Score=33.89 Aligned_cols=224 Identities=13% Similarity=0.036 Sum_probs=140.2
Q ss_pred ccChHHHHHHHHHHHhCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 58 QKNLLSMNEVYREMKDDGFE-PDVVSYGIMINAHCSAKRYDEAVELFREMEAT-NCKPSPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666655322 12566667777788888888888888777652 23555666777777777788888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHH-HHHhhCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 136 QFFGQSKKRGFEPEAPTYNAVVG-AYCWSMRINDAYRMMDEMRKCGI--GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877654332 122222333 67778888888888888755221 1123344444444566778888888888776
Q ss_pred cCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 213 RKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 213 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
.. ... ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.+....
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 222 3556667777777777788888888777665322 2333444444444566677777777777654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.55 Score=34.30 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
..+..+...|.+.|+.+.|.+.|.++.+ ....+. ...+..+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666654 222222 22344555666666666666666655443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.5 Score=35.13 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTL 262 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l 262 (330)
++.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 555555666666655555444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.85 Score=32.31 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=9.1
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 037620 232 CYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~ 249 (330)
...|++.+|+.+|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 445555555555555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.0015 Score=45.93 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=16.2
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYR 171 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (330)
+.+.+.....+++.+...+...+....+.++..|++.++.+...+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~ 63 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE 63 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 333333333334333333222233333444444444433333333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.96 Score=32.46 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=89.3
Q ss_pred ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH-HHHH
Q 037620 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR-TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS-TYEI 226 (330)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 226 (330)
+...|..-++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-..... |-.. -..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHH
Confidence 3445555554 456788899999999998876542221 1222334456789999999999998773332 3222 1111
Q ss_pred H--HHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 227 V--VRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 227 l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
| .-.+..+|.++....-.+-+...+-+.....-..|.-+-.+.|++.+|.++|..+.+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 1 23456788888888877776655444344455667777788999999999999887643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.034 Score=27.76 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=12.1
Q ss_pred CCChHHHHHHHHHHhccCcHHHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
|-+..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44455555555555555555554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.035 Score=28.12 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
|..|...|.+.|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444555555544444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.082 Score=26.73 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|..|...|.+.|++++|+.++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567777777777777777777744
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.4 Score=33.35 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHhhCCCC-CChHHHHHHHHHHhhccChHHHHHHHHHHHhC-CCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 24 RHVERAQEVFDKMKKRRFD-PDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-GFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444442211 02345555555666666666666666665541 123344455555555556666666666
Q ss_pred HHHHHHhcCCCCChHHHHHHHH-HHhccCcHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 102 LFREMEATNCKPSPHIFCTLIN-GLGSEKRLSEALQFFGQSKKRGF--EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665543222 122222222 56666666666666666644211 01222333333334455666666666666665
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
.........+..+...+...++++.+...+..... ..|+ ...+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 42111245555566666666666666666666654 1121 223333333333455566666666655544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.32 Score=38.33 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=54.7
Q ss_pred CCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch
Q 037620 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG---IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV 221 (330)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (330)
|.+....+...++..-....+++.+...+-+++... ..++. +-...++.+ ..-++++++.++..-.+ .|+.||-
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcch-hccccch
Confidence 334444455555554455566666666666665431 11111 111122222 22355566666655554 5666777
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
++++.+++.+.+.+++..|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777766666666665544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.2 Score=35.17 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTE---PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
....+|..++..+.+.|+++.|...+..+... ... ..+.....-+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567888899999999999999999988762 211 1233334456667788999999999988877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.58 E-value=1 Score=31.27 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=26.7
Q ss_pred HhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 90 HCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+.|++++|.+.|+.+...- -+-...+-..++.+|.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 334455555555555554431 0112333344555555555555555555555554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.46 Score=37.50 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEA 108 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (330)
.++++.++..=+.-|+-||.++++.++..+.+.+++.+|.++.-.|..
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445555554444445555555555555555555555555555444443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.8 Score=33.96 Aligned_cols=137 Identities=9% Similarity=0.135 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHH-c-CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 165 RINDAYRMMDEMRK-CGIGPNTRTYDIVLHHLIK-A-GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 165 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
...+|+++|+.... ..+--|..+...+++.... . .....-.++.+-+....+..++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555666653221 2234466677777766655 2 1333344455555554456677777788889999999999999
Q ss_pred HHHHHHHhC-CCCccHHHHHHHHHHHhccCChhHHHHHHHHH-----HhcCCCCChhhHHHHHHHH
Q 037620 242 RIWDEMKAR-GVLPVMHMYSTLINSLCHEDKLDDACKYFQEM-----LDIGIRPPGQLFSNLKQAL 301 (330)
Q Consensus 242 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 301 (330)
++|+..... +..-|...|..+|+.....|+..-..++..+= ...++..+...-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999887655 55667788999999999999876555554431 1234444444444443333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.7 Score=33.23 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT--EPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
.|...|-.+....++..|...++.-.+-++. ..+..+...|+.+| ..|+.+++..++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3445555555666677777777664332222 22344555666554 445555554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.3 Score=34.54 Aligned_cols=130 Identities=19% Similarity=0.159 Sum_probs=84.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCCCChhhHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATN-----CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR----GFEPEAPTYN 154 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 154 (330)
.++..++...+.++++++.|+...... ....-.++..|...|.+..++++|.-+..+..+. ++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 446677777788999999988875431 1223467888888999999999988877665442 2211111222
Q ss_pred -----HHHHHHHhhCChhHHHHHHHHHHH----cCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 155 -----AVVGAYCWSMRINDAYRMMDEMRK----CGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 155 -----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+.-++...|....|.+.-++..+ .|-++ -......+.+.|...|+.+.|+.-|+....
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 233445667888888888777654 33222 123445566778888999998888887755
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.91 Score=29.21 Aligned_cols=60 Identities=8% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
+..+-+..+....+.|++....+.+++|.+.+++..|+++++....+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 556666666677777888888888888888888888888887776532 223335655554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.17 E-value=5.3 Score=37.89 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
..+...+.+++|--.|+..-+ ..-.+.+|..+|+|.+|..+..++....-. -..+-..|+.-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccc
Confidence 333444555555555554322 122345555666666666655554322100 111123444555555555
Q ss_pred hHHHHHHHHHH
Q 037620 273 DDACKYFQEML 283 (330)
Q Consensus 273 ~~a~~~~~~~~ 283 (330)
-+|-++..+..
T Consensus 1016 ~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1016 YEAAKILLEYL 1026 (1265)
T ss_pred hhHHHHHHHHh
Confidence 55555555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.58 Score=29.73 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555555566666666666666666666666666666666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.8 Score=32.41 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDI 190 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 190 (330)
|.-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.--|+++-|.+-+...-+.+.. |-...|.-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 4456677777777778888888888888877764222222222222 223356777777666555544321 11122222
Q ss_pred HHHHHHHcCCHHHHHHHH-HHhhcCCCCCCchHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCCCC------ccHHHHHHH
Q 037620 191 VLHHLIKAGRTEEAYSVF-KRMSRKPGTEPTVSTYEIVV-RMFCYNAQVDMAMRIWDEMKARGVL------PVMHMYSTL 262 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l 262 (330)
+.. ..-++.+|..-+ ++... .|..-|...+ ..|...=.. ..+++++++..-. .=..||-.+
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 221 223444444333 33322 1222333222 222221111 2223333221100 013567778
Q ss_pred HHHHhccCChhHHHHHHHHHHhcC
Q 037620 263 INSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
.+-+...|+.++|..+|+-.+..+
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHHh
Confidence 888888888888888888777544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.065 Score=26.72 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=9.4
Q ss_pred ChhhHHHHHHHHHhcCchHHH
Q 037620 290 PGQLFSNLKQALRDEGMEETA 310 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a 310 (330)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.4 Score=32.94 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=28.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChH---HHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPH---IFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
..++++|+.-|+++.+..-..... +...++..+.+.+++++....+.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 346777777777776543122222 23344566667777777666666654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.87 Score=28.97 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 62 LSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
-++.+-++.+......|++....+.+++|.+.+++..|.++|+-++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555555555566666666666666666666666665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.59 E-value=4.1 Score=34.71 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLH 193 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 193 (330)
.+-..+..++.+.|+.++|.+.+.++.+.... ........|+.++...+.+.++..++.+-.+...+. -...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33455677778889999999999998765311 234467788999999999999999998876543322 2345665544
Q ss_pred HHHHcC
Q 037620 194 HLIKAG 199 (330)
Q Consensus 194 ~~~~~~ 199 (330)
-+...+
T Consensus 340 kaRav~ 345 (539)
T PF04184_consen 340 KARAVG 345 (539)
T ss_pred HHHhhc
Confidence 444343
|
The molecular function of this protein is uncertain. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.3 Score=28.57 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.7 Score=32.08 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=68.9
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCC---chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEP---TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (330)
.-+...|++++|..-|..........+ ....|..-..++.+.+.++.|+.-....++.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 456789999999999998876221111 1234555566778889999999888888877644 333344445678889
Q ss_pred CChhHHHHHHHHHHhcCCCCChh
Q 037620 270 DKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
..+++|+.=|+++++.. |...
T Consensus 182 ek~eealeDyKki~E~d--Ps~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD--PSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhC--cchH
Confidence 99999999999998764 4443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.29 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.4 Score=31.43 Aligned_cols=80 Identities=9% Similarity=0.063 Sum_probs=60.0
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc---CCCCChHHHHHHHHHHhccCc
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT---NCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 130 (330)
.+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+..|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455554 678888888887765545566555555554 67889999999887754 236789999999999999999
Q ss_pred HHHHH
Q 037620 131 LSEAL 135 (330)
Q Consensus 131 ~~~a~ 135 (330)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99875
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.32 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=11.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+..+...+...|++++|++.+++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.11 E-value=8.2 Score=36.72 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCChhhHHHHH----HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 147 EPEAPTYNAVV----GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 147 ~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
.|+...+.... ..+.....+++|.-.|+..-+ ....+.+|...|+|++|..+..++.. +..--..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~ 1000 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVI 1000 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHH
Confidence 34544444433 334445666666666554322 12346777788888888888887654 1111111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
+-..|+.-+...+++-+|-++..+.... ....+..+++...|++|+.+....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2255667777788888888777776543 222333445555666666655443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.9 Score=31.40 Aligned_cols=181 Identities=11% Similarity=0.034 Sum_probs=103.0
Q ss_pred cChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 59 KNLLSMNEVYREMKDDGFEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (330)
|-+.-|.-=|.+.... .| -+..||-+.-.+...|+++.|.+.|+...+.+ |....+...-.-.+.-.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHH
Confidence 4444444445554443 34 46778888888899999999999999999887 33333333333344557899999887
Q ss_pred HHHHHhcCCCCChhhHHHH-HHHHHhhCChhHHHHH-HHHHHHcCCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHhhcC
Q 037620 138 FGQSKKRGFEPEAPTYNAV-VGAYCWSMRINDAYRM-MDEMRKCGIGPNTRTYDIVLH-HLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 214 (330)
+.+..+.+ +.|+ |.++ +-.--..-++.+|..- .++..+. |..-|...|- .|...=..+. +++++...
T Consensus 156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKAD 225 (297)
T ss_pred HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhh
Confidence 77776653 2222 2222 1111223355555543 3333332 3334443332 2222212222 23333321
Q ss_pred CCC-----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 215 PGT-----EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 215 ~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
... ..=..||--+...+...|+.++|..+|+-.+..++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 010 01124677788889999999999999998887644
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.80 E-value=3.9 Score=32.21 Aligned_cols=81 Identities=9% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----cCCCCCCch
Q 037620 147 EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC-GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS----RKPGTEPTV 221 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 221 (330)
.++..+...++..++..+++....++++..... +...|...|..+|......|+..-...+.+.-. ++.++..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 445555556666666666666666666555443 344455666666666666666666555555421 224454444
Q ss_pred HHHHHH
Q 037620 222 STYEIV 227 (330)
Q Consensus 222 ~~~~~l 227 (330)
..-..+
T Consensus 279 ~L~~~L 284 (292)
T PF13929_consen 279 ELRSQL 284 (292)
T ss_pred HHHHHH
Confidence 443333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.9 Score=31.88 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=49.1
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCch
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI---GIRPPGQLFSNLKQALRDEGME 307 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 307 (330)
+.+.|+ +.|.+.|-.+...+..-++.....|...|. ..+.+++..++.+.++. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 456666666665554445555555555444 56677777777776642 2256677777777777777777
Q ss_pred HHHH
Q 037620 308 ETAV 311 (330)
Q Consensus 308 ~~a~ 311 (330)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.3 Score=33.07 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=51.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCC--CCCChHHHHHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG--FEPDVVSYGIMINA 89 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 89 (330)
+.+..++.+.+.+++++|+...+.-.+.+ |.|...-..++..++-.|+|++|..-++-.-... ..+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677778888888888777766643 4466667777888888888888877766665442 23345566666654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.41 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=9.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 118 FCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
|..+..+|...|++++|+..+++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3333444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.8 Score=29.81 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=6.2
Q ss_pred ccCcHHHHHHHHHHH
Q 037620 92 SAKRYDEAVELFREM 106 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~ 106 (330)
..|+|.+|.++|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.08 E-value=6 Score=32.61 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=102.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCC---C-CCChHHHHHHHHHHh
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG---F-EPDVVSYGIMINAHC 91 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~ll~~~~ 91 (330)
...+..+.|+++...+........ .++...+.++... ..++++++....+.....- . ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778889999866666555432 2355555555544 7889998888887776541 0 011122222222222
Q ss_pred ccC---cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc-----cCcH---HHHHHHHHHHHh--cCCCCChhhHHHHHH
Q 037620 92 SAK---RYDEAVELFREMEATNCKPSPHIFCTLINGLGS-----EKRL---SEALQFFGQSKK--RGFEPEAPTYNAVVG 158 (330)
Q Consensus 92 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~--~~~~~~~~~~~~l~~ 158 (330)
+.. +++++.++...... +......++..... ..++ +..+.+-..+.+ ........++..+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~-----~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~ 154 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQ-----NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAK 154 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 222 23333333211100 01111111111100 1111 111211122222 112345567888899
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGP---NTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988754221 344555556677788999999999998876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=91.89 E-value=3 Score=29.17 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=63.9
Q ss_pred HHHhhCCCCCChH--HHHHHHHHHhhccChHHHHHHHHHHHhCCC-----CCChHHHHHHHHHHhccCc-HHHHHHHHHH
Q 037620 34 DKMKKRRFDPDIK--SYTILLEGWGQQKNLLSMNEVYREMKDDGF-----EPDVVSYGIMINAHCSAKR-YDEAVELFRE 105 (330)
Q Consensus 34 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~ 105 (330)
..|.+.+..++.. ..+.++......+++.....+++.+..... ..+...|..++.+..+... ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3344444444442 356666666666777777777666643210 2366788888888866655 3456777787
Q ss_pred HHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 106 MEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
+.+.+.+.++.-|..++.++.+....+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 8777778888888888888776544433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.54 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=9.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 037620 120 TLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
.+..++...|++++|.+.+++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.11 Score=36.49 Aligned_cols=84 Identities=6% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
++..+.+.+.++....+++.+.. .+...+....+.++..|++.++.+...++++.. +..-...+++.|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 44455555666666666666664 233344555666666666666556665555511 1112334555556666
Q ss_pred ChhHHHHHHHHH
Q 037620 271 KLDDACKYFQEM 282 (330)
Q Consensus 271 ~~~~a~~~~~~~ 282 (330)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.45 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhh
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKK 38 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 38 (330)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666655443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.52 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555566666666666655554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.51 E-value=9.7 Score=33.87 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhhCCCCCChHHHHHHHHH-----HhhccChHHHHHHHHHHHh-------CCCCCChHHHHHHHHHHhcc
Q 037620 26 VERAQEVFDKMKKRRFDPDIKSYTILLEG-----WGQQKNLLSMNEVYREMKD-------DGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 93 (330)
...|.++++...+.| +......+..+ +....+.+.|+.+|....+ .+ ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888866 33333333222 4456789999999999877 44 333555666677664
Q ss_pred C-----cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hh
Q 037620 94 K-----RYDEAVELFREMEATNCKPSPHIFCTLINGLGS-EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC----WS 163 (330)
Q Consensus 94 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 163 (330)
. +.+.|..++.+..+.| .|+...+-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 6678999999998888 5665554444433333 35678999999999998843 22222333332 23
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+...|..++.+.-..|. |....-...+..+.. +.++.+...+..+..
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 477889999998888873 332222223333333 666666666655544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.44 E-value=10 Score=34.15 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=106.8
Q ss_pred HHHHHHHHHh-hCCCCCCh--HHHHHHHHHHh-hccChHHHHHHHHHHHhCCCCCChH-----HHHHHHHHHhccCcHHH
Q 037620 28 RAQEVFDKMK-KRRFDPDI--KSYTILLEGWG-QQKNLLSMNEVYREMKDDGFEPDVV-----SYGIMINAHCSAKRYDE 98 (330)
Q Consensus 28 ~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~ 98 (330)
.|+..++.+. +..++|.. .++-.+...+. ...+++.|+..+++.....-.++.. +-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4566677666 34445543 34445555555 6789999999999886553232222 1234556666666555
Q ss_pred HHHHHHHHHhcC----CCCChHHHHHH-HHHHhccCcHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hhCChhH
Q 037620 99 AVELFREMEATN----CKPSPHIFCTL-INGLGSEKRLSEALQFFGQSKKRG---FEPEAPTYNAVVGAYC--WSMRIND 168 (330)
Q Consensus 99 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~ 168 (330)
|...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888866532 22333444444 333334489999999998876542 2333444444444443 4455677
Q ss_pred HHHHHHHHHHcCC---------CCcHHHHHHHHHHHH--HcCCHHHHHHHHHHhh
Q 037620 169 AYRMMDEMRKCGI---------GPNTRTYDIVLHHLI--KAGRTEEAYSVFKRMS 212 (330)
Q Consensus 169 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 212 (330)
+.+.++.+..... .|...+|..+++.++ ..|+++.+...++.+.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776643211 234566666666554 5677667666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=4.4 Score=30.05 Aligned_cols=88 Identities=10% Similarity=0.104 Sum_probs=48.0
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPS-----PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
+...|++++|..-|...+..- |+. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 345566666666666665543 222 2334444455666666666666666666654 112222223344566666
Q ss_pred ChhHHHHHHHHHHHc
Q 037620 165 RINDAYRMMDEMRKC 179 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~ 179 (330)
.++.|+.-|..+...
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=4.8 Score=29.68 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=58.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
...+...|++++|...++........ .....+-..|.+.....|.++.|+..++...+.+..+ .....-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcC
Confidence 45567778888888888776541110 0011112234556677788888888888776654432 22334456777888
Q ss_pred ChhHHHHHHHHHHhcC
Q 037620 271 KLDDACKYFQEMLDIG 286 (330)
Q Consensus 271 ~~~~a~~~~~~~~~~~ 286 (330)
+-++|..-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=8.8 Score=32.70 Aligned_cols=125 Identities=7% Similarity=0.092 Sum_probs=80.1
Q ss_pred HHHHHccCChHHHHH-HHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 17 IDTLCKSRHVERAQE-VFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 17 i~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
|.--...|++-.|-+ ++..+......|+.....+ ......|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 344445677666544 4444444333344333333 3355678888888888776544 34456677788888888899
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
++.|..+-.-|....+ .++.............|-++++.-.++++...+
T Consensus 373 ~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999998888877653 344444444445556677888888888887664
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.35 Score=25.74 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=11.1
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh
Q 037620 297 LKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
+.++|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555555555544443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.05 E-value=13 Score=34.63 Aligned_cols=38 Identities=5% Similarity=-0.023 Sum_probs=20.9
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (330)
.|......+.+..+++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34455556666666666655544445555555555554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.90 E-value=12 Score=33.80 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=38.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC-------hHHHHHHHHHHHhC
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN-------LLSMNEVYREMKDD 74 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 74 (330)
.+|-.|.++|++++|.++...... ........+...+..|....+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 466788899999999999966555 344556677778888776532 23555556665554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.65 E-value=10 Score=32.64 Aligned_cols=181 Identities=9% Similarity=0.131 Sum_probs=127.3
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
+.|.....+++..+..+-.+.-+..+..++...| -+-..+..++++|... ..+....+++++.+..+. |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5677778889999999999999999999999886 4677888999999888 678888999998886543 33333444
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHHHHHHHHH
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPT------VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMHMYSTLIN 264 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 264 (330)
...| ..++...+..+|.++.. .+.|. ...|..+... -..+.+....+..++... |...-...+..+-.
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 4444 44888888888888765 22221 1245555432 245677777777777643 44444456666778
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 265 SLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (330)
-|....++++|++++..+++.+ ..|...-..++..++
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 8889999999999999888765 345555555555544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=10 Score=32.29 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
.........+...|+++.+.+.+...... +.....+...+++...+.|+++.|..+-+-|....+. ++.......-..
T Consensus 324 ~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa 401 (831)
T PRK15180 324 VLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSA 401 (831)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccH
Confidence 33333344556677777777777665443 2334556667777777777888877777777665544 444444333344
Q ss_pred HHcCCHHHHHHHHHHhhc
Q 037620 196 IKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~ 213 (330)
...|-++++...|+++..
T Consensus 402 ~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 402 DALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHhHHHHHHHHHHHHhc
Confidence 455667777777777654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.32 E-value=7.3 Score=30.41 Aligned_cols=201 Identities=11% Similarity=0.045 Sum_probs=119.5
Q ss_pred CCCCChhhHHHHHHH-HHccCChHHHHHHHHHHhhCCCCCChH---HHHHHHHHHhhccChHHHHHHHHHHHhC---CC-
Q 037620 5 GLKQELPDFNRLIDT-LCKSRHVERAQEVFDKMKKRRFDPDIK---SYTILLEGWGQQKNLLSMNEVYREMKDD---GF- 76 (330)
Q Consensus 5 g~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 76 (330)
+-.||+..=|..-.+ -.+...+++|+.-|....+.......+ +...++....+.+++++....+.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 455666554332211 134458899999999988753233333 4455688889999999999988888642 11
Q ss_pred -CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC--
Q 037620 77 -EPDVVSYGIMINAHCSAKRYDEAVELFREMEAT-----NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-- 148 (330)
Q Consensus 77 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 148 (330)
.-+..+.++++.......+.+.....|+.-.+. +-..--.|-..|...|...+++.+..+++.++..+.-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 224556677777666666655555555443221 101111223457778888888888888888876542111
Q ss_pred ---------ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHH-----HHHcCCHHHHHH
Q 037620 149 ---------EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNTRTYDIVLHH-----LIKAGRTEEAYS 206 (330)
Q Consensus 149 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~a~~ 206 (330)
=...|..-+++|....+-.....++++..... --|.+.... +|+- +.+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 12456666778887777777777787765422 223443332 3332 345677776643
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.31 E-value=15 Score=33.96 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=119.5
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCCh-------HHHHHHH-HHHhccCcHHHHHHHHHHHHhc----CCCCChhhHHHHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSP-------HIFCTLI-NGLGSEKRLSEALQFFGQSKKR----GFEPEAPTYNAVV 157 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 157 (330)
.....++.+|..+..++...-..|+. ..++.+- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888998888887654212221 1223322 2334578889998888776553 2234455666777
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHH---HHHH--HHHHHHcCCHH--HHHHHHHHhhc-----CCCCCCchHHHH
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRT---YDIV--LHHLIKAGRTE--EAYSVFKRMSR-----KPGTEPTVSTYE 225 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~--~a~~~~~~~~~-----~~~~~~~~~~~~ 225 (330)
.+..-.|++++|..+.....+..-.-+... |..+ ...+...|+.. +....+..... ++...+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777888999999988877665322223322 2222 22344556332 22233332222 111112233445
Q ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhCCCCccHHH--HHHHHHHHhccCChhHHHHHHHHHHhcCCCC----ChhhHHHHH
Q 037620 226 IVVRMFCYN-AQVDMAMRIWDEMKARGVLPVMHM--YSTLINSLCHEDKLDDACKYFQEMLDIGIRP----PGQLFSNLK 298 (330)
Q Consensus 226 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 298 (330)
.+..++.+. +...++..-+.-.......|-... +..|++.....|+.++|...+.++......+ +..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555441 122222222222222222222222 2356778888999999999999887543222 222222333
Q ss_pred HH--HHhcCchHHHHHHHHH
Q 037620 299 QA--LRDEGMEETAVVLAQK 316 (330)
Q Consensus 299 ~~--~~~~g~~~~a~~~~~~ 316 (330)
.. ....|+.+.+...+.+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 3457888887776665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.06 E-value=6.1 Score=29.15 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=70.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccH--HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVM--HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
.+...+...+++++|...++.........+. ..--.|.+.....|.+++|+.+++...+.+. .......-.+.+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3456788999999999999987754222111 1223456677889999999999988775432 34444556678999
Q ss_pred cCchHHHHHHHHHHHhcCCCC
Q 037620 304 EGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.|+-++|..-+++......+|
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 999999999999998876443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.9 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=11.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh
Q 037620 297 LKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
+..++.+.|++++|.+.++++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.85 E-value=2.9 Score=33.67 Aligned_cols=47 Identities=11% Similarity=-0.120 Sum_probs=21.0
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSV 207 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (330)
|.+.|.+++|+.+|...+... +-+..++..-..+|.+...+..|..-
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHh
Confidence 444555555555554444321 11444444444445444444444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.72 E-value=13 Score=32.51 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
++.+.|..++..+.+ ..+++...|..++.....
T Consensus 455 ~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 455 EDADLARIILLEAND--ILPDCKVLYLELIRFELI 487 (577)
T ss_pred cCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHh
Confidence 445555555555543 344444444444444333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.49 E-value=7.4 Score=34.13 Aligned_cols=153 Identities=19% Similarity=0.120 Sum_probs=104.2
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
+.-.|+++.|..++..+.+ ...+.+.+.+.+.|-.++|+++ .+|..-- .....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHH
Confidence 3456888888776655442 2345556666677777766653 2232221 2334567899999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 88876543 455788999999999999999999887654 445777788888888777777777776
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
|.. + ....+|...|+++++.+++..-.
T Consensus 722 g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 722 GKN-N-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ccc-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 632 2 23345667899999999888653
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.9 Score=26.35 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=28.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCchHHHHHHH
Q 037620 268 HEDKLDDACKYFQEMLDIGIRPP--GQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
...+.++|+..|+..++.-..+. ..++..++.+|...|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777765432222 235556667777777777766554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.7 Score=21.19 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHHHHHHhcCchHHHHHHHH
Q 037620 296 NLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~ 315 (330)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555666666655543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=89.14 E-value=9 Score=30.11 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW--- 162 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 162 (330)
=|.+++..++|.+++.+.-+.-+.--+..+.+...-|-.|.+.+++..+.++-....+..-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35677777888777776655443211222334444455677788877777777666554222233346666555543
Q ss_pred --hCChhHHHHHH
Q 037620 163 --SMRINDAYRMM 173 (330)
Q Consensus 163 --~~~~~~a~~~~ 173 (330)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.08 E-value=2 Score=28.92 Aligned_cols=59 Identities=7% Similarity=0.126 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
+..+-+..+...++.|++.....-+++|.+.+|+..|.++|+-...+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 56666677777788899999999999999999999999999887653 233333454443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.87 E-value=4.5 Score=30.47 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCccHHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG--VLPVMHMYSTLIN 264 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 264 (330)
|....++.+.+.+...+++...+.-.+. .+.+...-..+++.++-.|++++|..-++..-... ..+-...|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455677788889999999988876652 33344555678899999999999998888766542 2334566777766
Q ss_pred H
Q 037620 265 S 265 (330)
Q Consensus 265 ~ 265 (330)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.7 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
+..+|...|+.+.|..+++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.69 E-value=1 Score=21.99 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
|..+...|...|++++|...+++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.96 Score=21.80 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=7.0
Q ss_pred HhccCcHHHHHHHHHHHH
Q 037620 90 HCSAKRYDEAVELFREME 107 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~ 107 (330)
+.+.|++++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333333444444433333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.51 E-value=1.5 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888877765
|
... |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.47 E-value=13 Score=30.90 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---------CCCC
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG---------FEPE 149 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~ 149 (330)
..+.-+...|...|+++.|++.|.+...-- .+-....|..+|..-.-.|+|.....+..+..+.- +++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456677888889999999999998865431 13345566777778888899888888877776541 2223
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHHHHc-C-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH
Q 037620 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKC-G-----IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223 (330)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (330)
...+..+..... +++..|...|-..... . +.|...+....+.+++.-++-+--..+.....-+.-....+..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 333333433333 3555555544332211 1 2233333334444444333333222222211110111123333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCccHHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKAR-----GVLPVMHMYSTLIN 264 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 264 (330)
...+..- ..+++..+++++++++.. -+.|...+...+|+
T Consensus 309 r~il~~f--y~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 309 REILFKF--YSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHH--hhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 3344332 345788888888887653 23455555444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.45 E-value=1.7 Score=34.90 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=66.1
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
.-|.+.|.+++|++.|..... ..| +.+++..-..+|.+...+..|+.=....+..+-. -...|..-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 468899999999999998765 334 7788888889999999999888877776655322 23345544444455666
Q ss_pred hhHHHHHHHHHHhcCCCCChh
Q 037620 272 LDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~ 292 (330)
..+|.+=++..+.. .|+..
T Consensus 181 ~~EAKkD~E~vL~L--EP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhh--CcccH
Confidence 66776666666643 56543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.45 E-value=8 Score=27.17 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=9.1
Q ss_pred HHcCCHHHHHHHHHHhhc
Q 037620 196 IKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~ 213 (330)
...|++.+|..+|+.+.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344555555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=23 Score=32.24 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHH
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPTV--STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 275 (330)
..+.+.|...+..........+.. .++..+.......+..+++...++...... .+......-++.....++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345566777777654423332222 122333333333322445555555433221 2334455555666688899888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 276 CKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
...+..|-... .-...-.--+.+++...|+.++|..+++++.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888875432 2233333446777777899999999988874
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.27 E-value=8.2 Score=27.12 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=7.4
Q ss_pred ccCcHHHHHHHHHHHHh
Q 037620 127 SEKRLSEALQFFGQSKK 143 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~ 143 (330)
..|++.+|.++++.+.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 34444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.19 E-value=9.6 Score=27.80 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-----------cHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEK-----------RLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
++|+.-|++.+..+ |....++..+..+|...+ .+++|.+.|++.... .|+..+|+.-+...
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 33444444444443 333445555555544332 144455555555544 46666666555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.08 E-value=13 Score=28.41 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=10.8
Q ss_pred HhhccChHHHHHHHHHHH
Q 037620 55 WGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~ 72 (330)
+.-.+.+++|.++|.+..
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 344456777777776543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.04 E-value=20 Score=31.73 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=83.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLI 196 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (330)
.-+.++..+.+.|-.++|+++ .+|.... .....+.|+++.|.++..+. .+..-|..|..+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 344555666666666666544 2333222 22345677777777665443 26778888888888
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHH
Q 037620 197 KAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDAC 276 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (330)
..+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.. |...-+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHH
Confidence 88888888888887643 445666677777777666666665555433 23334566788888888
Q ss_pred HHHHHH
Q 037620 277 KYFQEM 282 (330)
Q Consensus 277 ~~~~~~ 282 (330)
+++..-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 877654
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.46 E-value=18 Score=29.25 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
.+......|++.|+.+.|.+.+++.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555666666666666665543
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=85.43 E-value=16 Score=28.78 Aligned_cols=128 Identities=10% Similarity=-0.015 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCC-----C-CCCh-------HHHHHHHHHHhhccChHHHHHHHHHHHhCCCC
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRR-----F-DPDI-------KSYTILLEGWGQQKNLLSMNEVYREMKDDGFE 77 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (330)
.....-.+.+.-..||..|++..++-.+.= . .++. .....-|.+++..|+|.+++.+.-+--..--+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 344555555666789999998888765520 1 1111 11223478999999999998877665543222
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH-----hccCcHHHHHHHH
Q 037620 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL-----GSEKRLSEALQFF 138 (330)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 138 (330)
........-|-.|.+.+++..+.++-..-....-.-...-|..++..| .=.|.+++|+++.
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 334455556667999999999888887766532122333466666555 5579999999887
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.01 E-value=18 Score=28.82 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=26.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
....|..+|.+.+|.++.++..... +.+...+..++..+...|+--.+.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555555555555555554443 334444455555555555544444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.75 E-value=56 Score=34.34 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
..+|....+...++|+++.|...+-...+.+ . +..+-..++-..+.|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567888888888999999988877776665 2 245666777888899999999999988854
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.73 E-value=16 Score=28.08 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=21.5
Q ss_pred CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc
Q 037620 147 EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (330)
.|.+.....++..|. .+++++|.+++.++.+.|..|.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 355555555555443 4556666777766666666543
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.43 E-value=23 Score=29.63 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=11.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHH
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDK 35 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~ 35 (330)
+.-+.+.|..+|+++.|++.|.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhh
Confidence 34444445555555555555544
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.19 E-value=3.6 Score=25.17 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCch-HHHHHHHHHHHhCCCHHHHHH
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPTV-STYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 242 (330)
..+.++|+..|....++....++. .++..++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444322222221 133344444444444444433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.14 E-value=30 Score=30.85 Aligned_cols=180 Identities=13% Similarity=0.225 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHH--HH-HhccCcHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhhC-
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLI--NG-LGSEKRLSEALQFFGQSKK-------RGFEPEAPTYNAVVGAYCWSM- 164 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 164 (330)
...+.++++...+.| ..........+ .+ +....+.+.|+.+++.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 356777777776665 22222221111 22 3456677778877777765 43 2334555666666543
Q ss_pred ----ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH----hCC
Q 037620 165 ----RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC----YNA 235 (330)
Q Consensus 165 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 235 (330)
+...|..++...-..|. |+...+...+..... ..+...|..+|....+ .|..+ .+..+..+|. ...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~~---A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHIL---AIYRLALCYELGLGVER 378 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCChH---HHHHHHHHHHhCCCcCC
Confidence 45567777777766653 233332222222222 2346677777777765 23221 1122222221 223
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+...|..++.+..+.|........ ..+..+.. ++++.+.-.+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 666777777777777622212211 12222222 55555555555554444
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.58 E-value=2.9 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=11.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|..+...+...++++.|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444555555555554443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.09 E-value=22 Score=28.40 Aligned_cols=235 Identities=9% Similarity=0.029 Sum_probs=141.1
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH----HHHHHHHHHHHhcCCCCChHHH
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY----DEAVELFREMEATNCKPSPHIF 118 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 118 (330)
+|.......+.++...|.. .+...+..+... +|...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4666777777777777753 444444445443 3555555566667777753 4677777766443 3556666
Q ss_pred HHHHHHHhccCcH-----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 119 CTLINGLGSEKRL-----SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 119 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+... ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666666554421 233333333332 3466666677778877776 4555665555553 35555555566
Q ss_pred HHHHcC-CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 194 HLIKAG-RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 194 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
++...+ +...+...+..+..+ ++..+-...+.++.+.++. .+...+-...+.+. .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 666543 244666666666642 3555566778888888885 45555555454432 234677788888884
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 273 DDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
+|+..+..+.+. .||..+-...+.++.+
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 789999888864 3577777666666543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.00 E-value=10 Score=24.54 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHH--HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTIL--LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
..++|..+-+.+...+ +..-...| +..+...|++++|..+.+.+ ..||...|.+|- -.+.|..+.+...
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~r 90 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHH
Confidence 4556666666655532 11112222 33456667777776666554 256666665543 3355555555555
Q ss_pred HHHHHhcCCCCChHHH
Q 037620 103 FREMEATNCKPSPHIF 118 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~ 118 (330)
+..+..+| .|....|
T Consensus 91 l~rla~sg-~p~lq~F 105 (115)
T TIGR02508 91 LNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHhCC-CHHHHHH
Confidence 55665555 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.68 E-value=31 Score=29.81 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=126.4
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHhccC------cHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHH
Q 037620 64 MNEVYREMKDDGFEPDVVSYGIMINAHCSAK------RYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
...+|+..... -|+...|+..|..|...- .......+++...+.+ .+.....|..+.-.+.......++
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~- 377 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV- 377 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH-
Confidence 34555555543 456666666666655432 2333444555544332 123345555555555555443322
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhh-CChhHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-HHHH--HHHHHH
Q 037620 136 QFFGQSKKRGFEPEAPTYNAVVGAYCWS-MRINDA-YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR-TEEA--YSVFKR 210 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~ 210 (330)
-..+...++..+...|..-+...... .+++-. ...+......-..+....|++.. .++ ++.. ..++..
T Consensus 378 --a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 378 --AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred --HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 22222222344555555555444422 122221 12223333321222223333332 111 1111 112222
Q ss_pred hhcCCCCCCchHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH--hccCChhHHHHHHHHHHh-cC
Q 037620 211 MSRKPGTEPTVSTY-EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL--CHEDKLDDACKYFQEMLD-IG 286 (330)
Q Consensus 211 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~-~~ 286 (330)
+.. -..|+..++ +.++..+...|-..+|..++..+... ++|+...|..+|+.= ...-+..-+..+++.|.. .|
T Consensus 451 ~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 451 LLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 222 222444333 56677778889999999999998876 455777777777632 223337778888888875 45
Q ss_pred CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 287 IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.++..|...+..=...|..+.+-.++.+..+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6788888777777788888888777766554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.50 E-value=69 Score=33.74 Aligned_cols=298 Identities=10% Similarity=0.055 Sum_probs=148.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCC--CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRF--DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
.+..+-.+++.+.+|...++.-..... ......|..+...|...++++...-+...-. .+...+.. +.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHh
Confidence 344455677888888888887311110 1122334444457888888888777765411 12233333 334556
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhhCChhHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV-VGAYCWSMRINDAYR 171 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 171 (330)
.|++..|...|+.+.+.+ ++...+++.++......|.++.+.-..+-..... .+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888899998888876 5556677777776666777666665444443321 2222222221 222233444444333
Q ss_pred HHH--------------HHHHcCCCCcHHHHHHHH-----------HHHHHcCCHHHHHHHHHHhh----------cCCC
Q 037620 172 MMD--------------EMRKCGIGPNTRTYDIVL-----------HHLIKAGRTEEAYSVFKRMS----------RKPG 216 (330)
Q Consensus 172 ~~~--------------~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~----------~~~~ 216 (330)
.+. .+... ..-|......++ .++...|.+..+.++.-++. ...+
T Consensus 1540 ~l~~~n~e~w~~~~~g~~ll~~-~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1540 YLSDRNIEYWSVESIGKLLLRN-KKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred hhhcccccchhHHHHHHHHHhh-cccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 322 00000 000111110000 11111222222222211111 0011
Q ss_pred CCCc------hHHHHHHHHHHHhCCCHHHHHHHH-HHHHhCCCCc-----cHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 217 TEPT------VSTYEIVVRMFCYNAQVDMAMRIW-DEMKARGVLP-----VMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 217 ~~~~------~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..++ ..-|..-+..-....+..+-+--+ +.+......| ...+|-...+.....|.++.|...+-...+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 1111 111222222111111111111111 1111111111 346788888888889999999988877766
Q ss_pred cCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 285 IGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.+ -+..+...++.+...|+...|..++++......+.
T Consensus 1699 ~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1699 SR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 54 34455567788889999999999999988665544
|
|
| >COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.45 E-value=12 Score=26.32 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=26.9
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
.|.+++..= ..++..+...++.-.|.++++++.+.++..+..|...-+..+...|
T Consensus 15 ~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 15 AGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred cCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444322 2445555555555666666666666554444443333334444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.94 E-value=18 Score=26.50 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc---Cc-------HHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhC
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSE---KR-------LSEALQFFGQSKKRGFEPE-APTYNAVVGAYCWSM 164 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 164 (330)
++.|.+.++.-...+ |.|...++.-..++... .+ +++|..-|++.... .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 344555555544444 55555555443333222 22 34455555555555 343 356666666665543
Q ss_pred ----C-------hhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 165 ----R-------INDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 165 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
+ +++|...|+.... ..|+...|..-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 2 3445555555555 357777777777665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.69 E-value=45 Score=31.08 Aligned_cols=199 Identities=12% Similarity=0.079 Sum_probs=106.8
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChh-------hHHHHHH-HHHhhCChhHHHHHHHHHHHc----CCCCcHHHHHHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAP-------TYNAVVG-AYCWSMRINDAYRMMDEMRKC----GIGPNTRTYDIVL 192 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 192 (330)
.....++.+|..++.++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678889998888876542222221 2333322 233568889998888776653 2233455667777
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH---HHH--HHHHHhCCCHH--HHHHHHHHHHhC--CCCc----cHHHH
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY---EIV--VRMFCYNAQVD--MAMRIWDEMKAR--GVLP----VMHMY 259 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~~--~a~~~~~~~~~~--~~~~----~~~~~ 259 (330)
.+..-.|++++|..+.....+. ...-+...+ ..+ ...+...|+.. +.+..+...... +-.| -..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999888876651 112232222 222 23345666333 333333333221 1111 12334
Q ss_pred HHHHHHHhc-cCChhHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 260 STLINSLCH-EDKLDDACKYFQEMLDIGIRPPGQLF--SNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 260 ~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
..++.++.+ .+...++..-++-.......|-.... ..+++.....|+.++|...+.++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 444555444 11222222222222222222222222 256778889999999999999988765544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.58 E-value=25 Score=31.09 Aligned_cols=88 Identities=15% Similarity=0.005 Sum_probs=43.6
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
.-.|+...|.+.+...........-.....|.+...+.|....|..++.+..... ...+-++-.+.+++.-..+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3345555565555554332211111223334444455555555555555555443 334445555556666666666666
Q ss_pred HHHHHHHHc
Q 037620 171 RMMDEMRKC 179 (330)
Q Consensus 171 ~~~~~~~~~ 179 (330)
+.|+...+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666655554
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.80 E-value=27 Score=27.98 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=11.4
Q ss_pred HHHHHHHHHhccCChhHH
Q 037620 258 MYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a 275 (330)
+|..|+.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466677777777765543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.35 E-value=25 Score=27.17 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH-HHHHHHHHHHhCCCH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNT-RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS-TYEIVVRMFCYNAQV 237 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 237 (330)
|....+++.|...+.+.+.. .|+. .-|+.-+..+.+..+++.+..--.+..+ +.|+.. ...-+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 44555677777766666553 4554 3444556666667777776665555544 344433 223344455566677
Q ss_pred HHHHHHHHHH
Q 037620 238 DMAMRIWDEM 247 (330)
Q Consensus 238 ~~a~~~~~~~ 247 (330)
+.|+..+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 7777777665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.3 bits (204), Expect = 1e-17
Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 4/183 (2%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMK---KRRFDPDIKSYTILLEGWGQ 57
+ L + + + A + ++R + Y ++ GW +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE-LFREMEATNCKPSPH 116
Q + V +KD G PD++SY + + +E +M K
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176
L++ L + P + ++ ++ +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
Query: 177 RKC 179
+
Sbjct: 298 KTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.8 bits (174), Expect = 6e-14
Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 3/299 (1%)
Query: 21 CKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80
K R Q + K++ + K+ T L+ + + + + P
Sbjct: 33 DKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWE 92
Query: 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA---LQF 137
++ D + +L A L
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197
+++ YNAV+ + + ++ ++ G+ P+ +Y L + +
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 198 AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257
+ + G + +++ + ++ LP
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 316
S L+ + +D K + + QL L + +E+ + +
Sbjct: 273 NTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 2e-11
Identities = 19/206 (9%), Positives = 61/206 (29%), Gaps = 6/206 (2%)
Query: 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185
K+++ L+ + P ++ + ++ + + +
Sbjct: 70 LLSKQMAGCLEDCTRQAPES--PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQ 127
Query: 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSR--KPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243
+ + + A+ + + T+ Y V+ + + +
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 244 WDEMKARGVLPVMHMYSTLINSLCHEDKLDDAC-KYFQEMLDIGIRPPGQL-FSNLKQAL 301
+K G+ P + Y+ + + +D+ + ++M G++ L +
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 302 RDEGMEETAVVLAQKIDKLRKTPLVD 327
R ++ V + P V+
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 5e-04
Identities = 40/213 (18%), Positives = 63/213 (29%), Gaps = 54/213 (25%)
Query: 27 ERAQEVFDKMKKRRF---DPDIKSYTI---LLEGWGQQKNLLSMN----EVYREMKD--- 73
V +K+ K P + +I LE + +N +++ + Y K
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 74 DGFEPDVV-----SYGIMINAHCSAKRYDEAVELFRE-------MEATNCKPSPHIFCTL 121
D P + S+ I H + E + LFR +E T
Sbjct: 462 DDLIPPYLDQYFYSH---IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-----STA 513
Query: 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG- 180
N GS + L+F+ K P Y +V A +D + K
Sbjct: 514 WNASGSILNTLQQLKFY----KPYICDNDPKYERLVNAI------------LDFLPKIEE 557
Query: 181 ---IGPNTRTYDIVLHHLIKAGRTEEAYSVFKR 210
T I L EEA+ +R
Sbjct: 558 NLICSKYTDLLRIALMAE-DEAIFEEAHKQVQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.81 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.79 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.78 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.77 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.77 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.76 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.76 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.75 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.75 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.75 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.73 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.7 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.68 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.66 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.66 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.65 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.63 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.63 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.62 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.54 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.53 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.53 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.51 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.48 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.48 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.43 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.4 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.36 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.35 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.35 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.34 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.31 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.28 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.28 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.27 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.27 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.27 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.27 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.27 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.25 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.24 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.21 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.2 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.19 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.13 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.1 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.1 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.1 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.06 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.05 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.04 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.03 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.03 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.03 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.02 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.0 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.0 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.99 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.99 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.98 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.98 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.98 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.97 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.96 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.95 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.93 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.92 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.92 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.91 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.91 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.9 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.89 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.85 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.84 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.83 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.82 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.82 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.82 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.78 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.76 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.75 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.72 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.71 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.71 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.69 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.68 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.66 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.54 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.49 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.49 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.47 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.44 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.24 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.19 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.12 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.1 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.1 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.91 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.88 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.7 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.38 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.34 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.17 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.94 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.91 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.82 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.57 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.48 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.47 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.4 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.3 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.2 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.47 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.47 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.24 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.21 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.16 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.14 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.71 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.47 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.32 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.24 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.14 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.68 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.33 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 92.44 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 92.38 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.21 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.97 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.35 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 90.24 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.24 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.15 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.61 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.69 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 87.59 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.92 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.93 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.6 | |
| 2zu6_B | 307 | Programmed cell death protein 4; protein-protein c | 84.58 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.21 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 82.82 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.71 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=246.11 Aligned_cols=197 Identities=14% Similarity=0.214 Sum_probs=176.0
Q ss_pred CCCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC---------hHHHHHHHHHH
Q 037620 2 DKFGLKQELP-DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN---------LLSMNEVYREM 71 (330)
Q Consensus 2 ~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~ 71 (330)
++.+..+++. .++.+|..|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 3455555443 5888999999999999999999999999999999999999999987654 67899999999
Q ss_pred HhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh
Q 037620 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 72 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (330)
...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA 198 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (330)
+|++|+.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=240.77 Aligned_cols=204 Identities=15% Similarity=0.279 Sum_probs=116.8
Q ss_pred HHHHHHHHhhCCCCCCh-HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc---------HHH
Q 037620 29 AQEVFDKMKKRRFDPDI-KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR---------YDE 98 (330)
Q Consensus 29 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~ 98 (330)
+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555544433 34666677777777777777777777777777777777777777765443 455
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 99 AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
.|+.||..+|+.||.+|++.|++++|.+++++|.+ .+..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666555 4555566666555555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=232.42 Aligned_cols=312 Identities=7% Similarity=0.023 Sum_probs=227.2
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC-------------------------------------------
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF------------------------------------------- 41 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 41 (330)
|.+++..+|+.++..|.+.|++++|+++|+.+.+.+.
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 5566788999999999999999999999998876431
Q ss_pred ---------------------------CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 42 ---------------------------DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 42 ---------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 1445555666666666666666666666666553 225555666666666666
Q ss_pred cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 95 RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666543 5567777777788888888888888888777653 3456677888888888888888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----
Q 037620 175 EMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR---- 250 (330)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 250 (330)
++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 877654 336677778888888888888888888887652 3345677888888888888888888888887665
Q ss_pred CCCcc--HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 251 GVLPV--MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 251 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
+..|+ ..+|..++.+|.+.|++++|..+++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..+.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 55566 6678888888888888888888888887665 446777888888888888888888888887776543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=231.28 Aligned_cols=311 Identities=13% Similarity=0.043 Sum_probs=231.0
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-C--------------CCCCChHHHHHHHHHHhhccChHHHHHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKK-R--------------RFDPDIKSYTILLEGWGQQKNLLSMNEVYRE 70 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 70 (330)
.++++.+++.++.+|.+.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788888888888888888888888884322 1 2234578888888888888998888888888
Q ss_pred HHhCCCC----------------------------------------------------------------------CCh
Q 037620 71 MKDDGFE----------------------------------------------------------------------PDV 80 (330)
Q Consensus 71 ~~~~~~~----------------------------------------------------------------------~~~ 80 (330)
+.+.+.. ++.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 8654321 344
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
.++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++++++.+.. +.+..+++.++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 555556666666666666666666666554 4455566666666666666666666666665442 44667778888888
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 240 (330)
.+.|++++|..+|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+ ..+.+..+|..++.+|.+.|++++|
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887753 23567888888888888888888888888776 2344677788888888888888888
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCchHHHHHHH
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI----GIRPP--GQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+++
T Consensus 461 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888876544 6778888888888888888888888888765 55666 678888888888888888888888
Q ss_pred HHHHhcCC
Q 037620 315 QKIDKLRK 322 (330)
Q Consensus 315 ~~~~~~~~ 322 (330)
+++.+.++
T Consensus 540 ~~~~~~~p 547 (597)
T 2xpi_A 540 NQGLLLST 547 (597)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhCC
Confidence 88877654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-27 Score=195.44 Aligned_cols=307 Identities=11% Similarity=0.050 Sum_probs=249.7
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.+..+|..+...+.+.|++++|+..|+.+.+.. |.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566778888888888888888888888887742 3455678888888888888888888888887764 2345666777
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
...+...|++++|.+.|+++.+.. |.+..+|..+..++...|++++|...++++.+.+ +.+...+..+...+...|++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 788888888888888888888765 5667888888888888888888888888888774 44567788888888888999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
++|...+++..... +.+..++..+..++...|++++|...++++.+. .+.+..++..+...+...|++++|...+++
T Consensus 220 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 220 DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998888887754 235778888999999999999999999998872 233566788999999999999999999999
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+
T Consensus 297 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 297 ALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 988754 377889999999999999999999999998753 44577888999999999999999999999887543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-26 Score=190.82 Aligned_cols=306 Identities=16% Similarity=0.086 Sum_probs=267.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
.+...+..+...+...|++++|...++...+. .|.+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+.
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 108 (388)
T 1w3b_A 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLA 108 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHH
Confidence 34556777778888999999999999998874 46688899999999999999999999999998874 33567899999
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.++...|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|.++.+.. +.+..+|..+...+...|+++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999876 6667788889999999999999999999998874 446788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|...|+++...+. .+...+..+...+...|++++|...+++.... .+.+..++..+...+...|++++|...++++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 187 LAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998653 35778889999999999999999999998762 2335778899999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.++. +..+|..+..++.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+
T Consensus 264 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 264 IELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 987654 67789999999999999999999999999865 56788999999999999999999999999987643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-26 Score=189.83 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=263.5
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.++..+..+...+.+.|++++|+.+|+.+.+. .+.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 446677999999999999999999999999884 35678999999999999999999999999999875 4468889999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCCh---HHHHHH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSP---HIFCTL------------INGLGSEKRLSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (330)
..++.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++++.+.. +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 999999999999999999999875 4455 566555 445899999999999999998874 55788
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHH----
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIV---- 227 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---- 227 (330)
.+..+..+|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...++++... .+.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 89999999999999999999999998764 346889999999999999999999999999862 22334444444
Q ss_pred --------HHHHHhCCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 037620 228 --------VRMFCYNAQVDMAMRIWDEMKARGVLPV----MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFS 295 (330)
Q Consensus 228 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (330)
...+...|++++|...|+++.+.... + ...+..+..++.+.|++++|+..++++.+.. +.+...+.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 78899999999999999999886433 2 3478888999999999999999999998764 44788999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 296 NLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+..+|...|++++|...++++.+..+.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999886543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-23 Score=167.94 Aligned_cols=306 Identities=10% Similarity=0.019 Sum_probs=259.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
++..+..+...+...|++++|+..|+.+.+.. |.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46678889999999999999999999998853 5578899999999999999999999999999874 337788999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCC---CChHHHHHH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChhhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCK---PSPHIFCTL------------INGLGSEKRLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
++...|++++|...|+++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999999875 4 455566555 578899999999999999998874 5577889
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHH--------
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYE-------- 225 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 225 (330)
..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHH
Confidence 999999999999999999999998864 4477899999999999999999999999988632 22233222
Q ss_pred ----HHHHHHHhCCCHHHHHHHHHHHHhCCCCccH----HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 226 ----IVVRMFCYNAQVDMAMRIWDEMKARGVLPVM----HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 226 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3366789999999999999999886543 22 235567789999999999999999999864 4478899999
Q ss_pred HHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 298 KQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
...+...|++++|...+++..+..+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-23 Score=174.40 Aligned_cols=303 Identities=11% Similarity=0.075 Sum_probs=247.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh---HHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV---VSY 83 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (330)
+.+..+|..+..++...|++++|+..|+.+.+.+ +.+..++..+..++...|++++|.+.|+++.+.. +.+. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 4568889999999999999999999999999854 4568899999999999999999999999999874 2234 555
Q ss_pred HHH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh
Q 037620 84 GIM------------INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 84 ~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (330)
..+ ...+...|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|.+.++++.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 555 445889999999999999999876 7788999999999999999999999999998874 55788
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHhhcCCCCCC
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV------------LHHLIKAGRTEEAYSVFKRMSRKPGTEP 219 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (330)
++..+...|...|++++|...++++..... .+...+..+ ...+...|++++|...|+++.+.....+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 999999999999999999999999987642 244444444 7889999999999999999987322212
Q ss_pred c--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 220 T--VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 220 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
. ..++..+..++.+.|++++|...++++.+.... +...|..+..+|...|++++|...++++++.. +.+...+..+
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 369 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 1 347888999999999999999999999876533 67899999999999999999999999999753 2245555555
Q ss_pred HHH------------HHhcC-----chHHHHHHHHH
Q 037620 298 KQA------------LRDEG-----MEETAVVLAQK 316 (330)
Q Consensus 298 ~~~------------~~~~g-----~~~~a~~~~~~ 316 (330)
..+ |...| +.+++.+.+++
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 532 33334 55666777765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-23 Score=165.19 Aligned_cols=297 Identities=10% Similarity=-0.001 Sum_probs=248.5
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
+++.++..+..+...+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 456777888899999999999999999999998853 4566777788888999999999999999999874 44788889
Q ss_pred HHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 85 IMINAHCSAK-RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 85 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
.+...+...| ++++|.+.|++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999876 6678889999999999999999999999998874 44567778899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------CCCCchHHHHHHHHHHHhCCC
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP-------GTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~ 236 (330)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. ..+....++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998864 3467889999999999999999999999887521 113345688899999999999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCchH
Q 037620 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL-RDEGMEE 308 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 308 (330)
+++|...+++..+.... +...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999887544 67789999999999999999999999998654 34677777788777 4555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-22 Score=172.04 Aligned_cols=303 Identities=12% Similarity=0.003 Sum_probs=256.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...+......+.+.|++++|+..|+.+.+.. |+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788889999999999999999999864 789999999999999999999999999999875 4467889999999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCC-------------------------------------------------------
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPS------------------------------------------------------- 114 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------------------------- 114 (330)
+...|++++|...|+++...+ +++
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999987665 211
Q ss_pred ------------------------hHHHHHHHHHHh---ccCcHHHHHHHHHHHHh-----cCC--------CCChhhHH
Q 037620 115 ------------------------PHIFCTLINGLG---SEKRLSEALQFFGQSKK-----RGF--------EPEAPTYN 154 (330)
Q Consensus 115 ------------------------~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 154 (330)
...+......+. +.|++++|...++++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 233333333333 38999999999999987 311 22356778
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN 234 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (330)
.+...+...|++++|...++.+...... ...+..+...+...|++++|...++++... .+.+..++..+...+...
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999987543 888899999999999999999999999873 344567888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 235 AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999987655 67789999999999999999999999998764 346778889999999999999999999
Q ss_pred HHHHhcCC
Q 037620 315 QKIDKLRK 322 (330)
Q Consensus 315 ~~~~~~~~ 322 (330)
+++.+...
T Consensus 396 ~~a~~~~~ 403 (514)
T 2gw1_A 396 DLAIELEN 403 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99876544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-22 Score=170.99 Aligned_cols=309 Identities=12% Similarity=-0.005 Sum_probs=246.3
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC--------
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP-------- 78 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------- 78 (330)
.|+...|..+..++.+.|++++|+..++.+.+.. |.+..+|..+..++...|++++|...|+++...+...
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3788999999999999999999999999998854 5577899999999999999999999999987764210
Q ss_pred ----------------------------------------------------------------------ChHHHHHHHH
Q 037620 79 ----------------------------------------------------------------------DVVSYGIMIN 88 (330)
Q Consensus 79 ----------------------------------------------------------------------~~~~~~~ll~ 88 (330)
+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 1222333333
Q ss_pred HHh---ccCcHHHHHHHHHHHHh-----cCC--------CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 89 AHC---SAKRYDEAVELFREMEA-----TNC--------KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 89 ~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
.+. +.|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++++.+.. |+...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 333 37999999999999887 310 2345677888899999999999999999998875 33778
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (330)
+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+.
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHH
Confidence 8888999999999999999999988764 336678888899999999999999999998762 2335667888888899
Q ss_pred hCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHh---c
Q 037620 233 YNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR-PP----GQLFSNLKQALRD---E 304 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~ 304 (330)
..|++++|...++++.+.... +...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999988876443 5677888888999999999999999988764311 11 3378888888888 8
Q ss_pred CchHHHHHHHHHHHhcCC
Q 037620 305 GMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 305 g~~~~a~~~~~~~~~~~~ 322 (330)
|++++|...++++.+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDP 446 (514)
T ss_dssp THHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999988877654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-22 Score=159.15 Aligned_cols=275 Identities=10% Similarity=-0.008 Sum_probs=237.2
Q ss_pred CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHH
Q 037620 41 FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120 (330)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (330)
.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 45567778888899999999999999999998875 4466677778889999999999999999999876 678889999
Q ss_pred HHHHHhccC-cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 037620 121 LINGLGSEK-RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG 199 (330)
Q Consensus 121 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (330)
+...+...| ++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999875 44677899999999999999999999999988643 35667778999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--------CCccHHHHHHHHHHHhccCC
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG--------VLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 271 (330)
++++|...+++..+. .+.+...+..+...+...|++++|...+++..+.. ......++..+..++...|+
T Consensus 174 ~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999873 34567788999999999999999999999987642 13345789999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 272 LDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+..+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999865 44678899999999999999999999999887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-22 Score=163.42 Aligned_cols=292 Identities=10% Similarity=0.008 Sum_probs=232.4
Q ss_pred HHccCChHHHHH-HHHHHhhCCC-CC--ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 20 LCKSRHVERAQE-VFDKMKKRRF-DP--DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 20 ~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
+.-.|++++|.+ .++....... .| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8876655321 11 35678889999999999999999999999885 4478889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH---------------HHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA---------------VVGAY 160 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 160 (330)
+++|...|+++.+.. +.+..++..+..++...|++++|...++++.+... .+...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999886 77889999999999999999999999999988742 22323221 23334
Q ss_pred HhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
...|++++|...++++.+..... +..++..+...+...|++++|...++++... .+.+..++..+...+...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48999999999999998864321 5788999999999999999999999998862 34457789999999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcCchHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP----------PGQLFSNLKQALRDEGMEET 309 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~ 309 (330)
|...++++.+.... +...+..+..++.+.|++++|...++++.+..... ...+|..+..++...|++++
T Consensus 270 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999887543 67889999999999999999999999998643111 26789999999999999999
Q ss_pred HHHHHHHH
Q 037620 310 AVVLAQKI 317 (330)
Q Consensus 310 a~~~~~~~ 317 (330)
|..++++.
T Consensus 349 A~~~~~~~ 356 (368)
T 1fch_A 349 YGAADARD 356 (368)
T ss_dssp HHHHHTTC
T ss_pred HHHhHHHH
Confidence 99887643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-20 Score=154.14 Aligned_cols=291 Identities=11% Similarity=0.060 Sum_probs=237.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC--CChHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE--PDVVSYG 84 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 84 (330)
+.+...+..+...+...|++++|...++.+.+.. +.+...|..+...+...|++++|...|+++.+.... .+...+.
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 3457789999999999999999999999998853 447788999999999999999999999999987420 2445554
Q ss_pred HH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 85 IM------------INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 85 ~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
.+ ...+...|++++|.++++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 190 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44 578889999999999999999876 7788999999999999999999999999999874 567889
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD------------IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT 220 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (330)
+..+...+...|++++|...++...+.... +...+. .+...+...|++++|...++++.+.....+.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 999999999999999999999999886432 333332 2366788999999999999998873222111
Q ss_pred h--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 221 V--STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 221 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
. ..+..+..++...|++++|...+++..+.... +..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 347 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 1 23556788999999999999999999887543 77889999999999999999999999999764 23455555555
Q ss_pred HHHHh
Q 037620 299 QALRD 303 (330)
Q Consensus 299 ~~~~~ 303 (330)
.+...
T Consensus 348 ~~~~~ 352 (359)
T 3ieg_A 348 KAQRL 352 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-20 Score=161.28 Aligned_cols=309 Identities=15% Similarity=0.101 Sum_probs=212.9
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC------------
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD------------ 74 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------ 74 (330)
|.++..|..+..++.+.|++++|++.|+.+.+.. |.+..++..+..++...|++++|...|+.+...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 3456777888888888888888888888877743 446677777777787778777777766422100
Q ss_pred --------------------------------------------------------------------------------
Q 037620 75 -------------------------------------------------------------------------------- 74 (330)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (330)
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred ---------------CCCCC--------hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 75 ---------------GFEPD--------VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 75 ---------------~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...|+ ..++..+...+...|++++|...|+++.+.. |+..++..+...+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 00111 1134444456666677777777777777654 4467777777777778888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
++|...+.++.+.. +.+..++..+...+...|++++|...+++...... .+...+..+...+...|++++|...++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887777664 34566777777778888888888888887777542 24567777777888888888888888877
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----ccHHHHHHHHHHHhcc----------CChhHHH
Q 037620 212 SRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL-----PVMHMYSTLINSLCHE----------DKLDDAC 276 (330)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------~~~~~a~ 276 (330)
.+. .+.+...+..+...+...|++++|...++++.+.... .....+......+... |++++|.
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 662 2334556777777888888888888888777654211 1122234444556666 8888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 277 KYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
..++++.+.. +.+...+..+...+.+.|++++|.+.+++..+..+.
T Consensus 449 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 449 KLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 8888887654 346677888888899999999999999988876654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=158.71 Aligned_cols=267 Identities=9% Similarity=-0.036 Sum_probs=220.5
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999999875 4478899999999999999999999999999886 677899999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCCh----------hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEA----------PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDIVL 192 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 192 (330)
+|...|++++|...++++.+.. +.+. ..+..+...+...|++++|...++++...... ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998763 1122 22334578899999999999999999986432 1678999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
..+...|++++|...+++..+. .+.+..+|..+..+|...|++++|...++++.+.... +..++..+..+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 9999999999999999998872 3446778999999999999999999999999887544 578899999999999999
Q ss_pred hHHHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 273 DDACKYFQEMLDIGIR-----------PPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 273 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
++|...++++++.... .+...|..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999863211 1367889999999999999988887764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-20 Score=160.63 Aligned_cols=302 Identities=12% Similarity=0.071 Sum_probs=244.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...|..+...+.+.|++++|+..|+.+.+.. |.+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4668888999999999999999999999853 5688999999999999999999999999999875 4478889999999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCC-------------------------------------CChH----------------
Q 037620 90 HCSAKRYDEAVELFREMEATNCK-------------------------------------PSPH---------------- 116 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~-------------------------------------~~~~---------------- 116 (330)
+...|++++|...|+.+ ..... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999643 21100 0000
Q ss_pred --------------HHHHHHHHHhc--------cCcHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhhCChh
Q 037620 117 --------------IFCTLINGLGS--------EKRLSEALQFFGQSKKRGFEPEA-------PTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 117 --------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 167 (330)
....+...+.. .|++++|..+++++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 11222222222 247889999999988764 2232 34666777888899999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|...++...... |+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999864 55788889999999999999999999998862 3346778899999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 887544 56789999999999999999999999999865 4567788899999999999999999999987654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=153.82 Aligned_cols=269 Identities=11% Similarity=0.030 Sum_probs=226.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..+...+...|++++|...|+.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35668889999999999999999999999853 5678899999999999999999999999999875 447889999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHH---------------HHHHHhccCcHHHHHHHHHHHHhcCCCC-Chhh
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCT---------------LINGLGSEKRLSEALQFFGQSKKRGFEP-EAPT 152 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 152 (330)
++...|++++|.+.++++.... +.+...+.. .+..+...|++++|...++++.+..... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 9999999999999999998875 444433331 2334448999999999999998874221 5788
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (330)
+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+. .+.+..++..+..++.
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 9999999999999999999999998864 346789999999999999999999999998862 3446778899999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCc----------cHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 233 YNAQVDMAMRIWDEMKARGVLP----------VMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
..|++++|...++++.+..... ...+|..+..++...|++++|..++++.+
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999987653221 16789999999999999999999887443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=152.11 Aligned_cols=277 Identities=6% Similarity=-0.009 Sum_probs=139.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...+..+...+...|++++|..+|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666666777777777777666532 3355666666666666677777777776666653 3355566666666
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH-HH-HHHhhCChh
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV-VG-AYCWSMRIN 167 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 167 (330)
+...|++++|.+.++++.+.. +.+...+..+...+ |+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 666666666666666666543 22333332220000 000000001 11 134444555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544432 123444455555555555555555555554431 1223444555555555555555555555555
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP-----------PGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
.+.... +...+..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|..+++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 544322 34455555555555555555555555554432111 24455555555555666655555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-21 Score=152.43 Aligned_cols=250 Identities=8% Similarity=-0.007 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666667777777777777777777653 3366667777777777777777777777777664 5566777777777
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHHcCCHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH--HLIKAGRTE 202 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 202 (330)
+...|++++|.+.++++.+.. +.+...+..+.... |+......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 777777777777777776653 22222222221100 11111112212 367788999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 203 EAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
+|...++++.+. .+.+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998862 3346778899999999999999999999999887544 6788999999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 283 LDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 283 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+.. +.+...+..+...+.+.|++++|.+.+++..+..+.
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 8765 446788999999999999999999999998876654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-21 Score=156.01 Aligned_cols=267 Identities=8% Similarity=-0.029 Sum_probs=220.3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..+...+.+.|++++|+.+|+.+.+.. |.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999999853 5578899999999999999999999999999874 446889999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChH----------HHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CChhhHHHHH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPH----------IFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PEAPTYNAVV 157 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 157 (330)
++...|++++|...|+++.+.. +.+.. .+..+...+...|++++|.+.++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998764 22222 3334588999999999999999999987422 1678899999
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
..+...|++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+. .+.+..++..+..+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999998864 346889999999999999999999999998872 334577899999999999999
Q ss_pred HHHHHHHHHHHhCCCC-----------ccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVL-----------PVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998764211 1357889999999999999988887665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-19 Score=143.11 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=216.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
++.....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 35566789999999999877653 3433 4556678999999999999986654 2 3667888889999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH
Q 037620 95 RYDEAVELFREMEATNC-KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (330)
+.++|++.++++...+. |.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999987653 55677778888999999999999999987 467888999999999999999999999
Q ss_pred HHHHHcCCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 174 DEMRKCGIGPNTRTY---DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...+++..+.
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998864 443211 12223344458999999999999873 5567888999999999999999999999999987
Q ss_pred CCCccHHHHHHHHHHHhccCChhH-HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHH
Q 037620 251 GVLPVMHMYSTLINSLCHEDKLDD-ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (330)
.+. ++.++..++..+...|+.++ +..+++++.+.. |+... +.....+.+.++++..-
T Consensus 230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 655 78889999999999999876 578999998754 44433 23445566666666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=142.86 Aligned_cols=255 Identities=13% Similarity=0.158 Sum_probs=208.1
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDV--VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
++.....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34456789999999999887654 3333 4556678999999999999987654 2 3678889999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 130 RLSEALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
+.++|.+.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 566677778999999999999999987 457889999999999999999999999
Q ss_pred HHhhcCCCCCCchHHH---HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 209 KRMSRKPGTEPTVSTY---EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 209 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
+++.+. .|+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...++++++.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999873 2443211 2233444566999999999999998744 48889999999999999999999999999986
Q ss_pred CCCCChhhHHHHHHHHHhcCchHH-HHHHHHHHHhcCCC
Q 037620 286 GIRPPGQLFSNLKQALRDEGMEET-AVVLAQKIDKLRKT 323 (330)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 323 (330)
. +.+..++..++..+...|+.++ +.++++++.+..+.
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 5 4578889999999999999876 67899998877664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=163.95 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=126.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhh---CCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKK---RRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
..+||++|++|++.|++++|.++|+.|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCc-HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC------hhhHHHHHHH
Q 037620 87 INAHCSAKR-YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE------APTYNAVVGA 159 (330)
Q Consensus 87 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 159 (330)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ ..++.|+ ..+...|...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999888655443 444445444 3334443 4555666677
Q ss_pred HHhhC
Q 037620 160 YCWSM 164 (330)
Q Consensus 160 ~~~~~ 164 (330)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=149.09 Aligned_cols=268 Identities=13% Similarity=0.113 Sum_probs=120.9
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
+++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 34458888888888888888888888542 46668888888888888888888877766654 44567777888
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 88888888888877773 366678888888888888888888888866 46888888888888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.+++|..+++..
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888877 267888888888888888888855444321 23333456788888888888888888887
Q ss_pred HhCCCCccHHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 248 KARGVLPVMHMYSTLINSLCHE--DKLDDACKYFQEMLDIGIRP------PGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
.... +-....|+.+..+|++- ++..+.++.|..- .+++| +...|..++..|...++++.|....
T Consensus 234 L~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 7665 33566677776666653 3333444433321 13333 4667888888888888888876543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=164.34 Aligned_cols=150 Identities=11% Similarity=0.143 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEA---TNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV 156 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (330)
..||+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc------hHHHHHHHH
Q 037620 157 VGAYCWSMRI-NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT------VSTYEIVVR 229 (330)
Q Consensus 157 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~ 229 (330)
|.++++.|+. ++|.++|++|...|+.||..+|+.++....+. ..++..+++. ++..|+ ..+...|..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~--P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK--PTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC--CCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC--cccCCCCCCcccccchHHHHH
Confidence 9999999985 78999999999999999999999998766554 4455555553 233333 334445566
Q ss_pred HHHhCC
Q 037620 230 MFCYNA 235 (330)
Q Consensus 230 ~~~~~~ 235 (330)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-15 Score=129.40 Aligned_cols=243 Identities=13% Similarity=0.086 Sum_probs=132.8
Q ss_pred ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cC
Q 037620 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EK 129 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 129 (330)
.+++++|.+.|++..+.+ +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .+
T Consensus 164 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 334444444444444332 33334444444443 444444444444444432 23334444444433 44
Q ss_pred cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-----CC
Q 037620 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA-----GR 200 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 200 (330)
++++|..++++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 5555555555544432 23344444444444 455566666665555443 334455555555555 56
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc----cCChh
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH----EDKLD 273 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 273 (330)
+++|...+++..+. + +...+..+...|...| ++++|.++|++..+.+ ++..+..+...|.. .++++
T Consensus 312 ~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 312 REQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 66666666665552 1 2344555555555544 5667777777666653 45566666666666 67777
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhcCC
Q 037620 274 DACKYFQEMLDIGIRPPGQLFSNLKQALRD----EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 322 (330)
+|..+|++..+.+ +...+..+...|.+ .+++++|..++++..+.+.
T Consensus 385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7777777777654 45566667777776 6777888777777776653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-18 Score=127.42 Aligned_cols=199 Identities=13% Similarity=0.015 Sum_probs=106.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
|+++..+..+...+.+.|++++|+..|+...+.. |.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4556666666666666666666666666666532 3455666666666666666666666666666553 2245556666
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 87 INAHCSA-----------KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 87 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
..++... |++++|+..|++..+.. |.+...+..+..++...|++++|...+++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 66666666666555554 4445555555555556666666666665555554 44555555
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555555555542 123445555555555555555555555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-15 Score=126.82 Aligned_cols=223 Identities=8% Similarity=-0.005 Sum_probs=123.7
Q ss_pred ChhhHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhh----ccChHHHHHHHHHHHhCCCCCCh
Q 037620 9 ELPDFNRLIDTLCK----SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ----QKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 9 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
++..+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|.++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555655 667777777777666643 45566666666666 666777777777666653 44
Q ss_pred HHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 81 VSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 81 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
..+..|...|.. .+++++|+++|++..+.+ ++..+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555555566655 556666666666666554 34455555555554 556666666666665553 4455
Q ss_pred HHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHH
Q 037620 153 YNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTY 224 (330)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (330)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|++..+. .+...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 5555555555 556666666666555543 33444444444443 44555555555554431 122233
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHhC
Q 037620 225 EIVVRMFCY----NAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 225 ~~l~~~~~~----~~~~~~a~~~~~~~~~~ 250 (330)
..+...|.. .+++++|...|++..+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 334444443 44455555555444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=129.28 Aligned_cols=224 Identities=8% Similarity=0.051 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCC----hHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNC--KPS----PHIFC 119 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 119 (330)
..|..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|.+.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555555555555555555555544 4455555555555555555555555555544320 011 35555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG 199 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (330)
.+..++...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 55566666666666666666655542 221 23444556666666666665542 123445566666666666
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
++++|...+++..+. .+.+..++..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 666666666666541 2234556666666667777777777777666665433 4556666666777777777777777
Q ss_pred HHHHh
Q 037620 280 QEMLD 284 (330)
Q Consensus 280 ~~~~~ 284 (330)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-17 Score=127.95 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC--CC----hhhH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE--PE----APTY 153 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 153 (330)
...+..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|.+.+.++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888999999999999999999999887 78899999999999999999999999998775311 12 5788
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
..+...+...|++++|...+++..... |+. ..+...|++++|...++.+... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 899999999999999999999998853 443 3466778899999999998872 33356678889999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHH
Q 037620 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (330)
.|++++|...+++..+.... +...+..+..++...|++++|...+++.++.. +.+...+..+..++.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999887654 67889999999999999999999999999865 44688899999999999999999999
Q ss_pred HHHHHhcC
Q 037620 314 AQKIDKLR 321 (330)
Q Consensus 314 ~~~~~~~~ 321 (330)
+++..+..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99987765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=144.50 Aligned_cols=249 Identities=14% Similarity=0.151 Sum_probs=111.4
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999883 3358999999999999999999999653 577899999999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (330)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 4557889999999999999999998885 367789999999999999999999999976
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47899999999999999999999988 2688999999999999999999665544 2234444667
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
++..|.+.|++++|..+++..+... +-....|+.+..+|.+- ++++..+-+
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl 263 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 263 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 8899999999999999999998654 45567788777777654 333333333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=125.45 Aligned_cols=210 Identities=8% Similarity=-0.021 Sum_probs=98.9
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
|++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455555555556666666666666666665543 2245555555566666666666666666665554 4455555555
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
..++...+. . ... .....|++++|...+++..+... -+...+..+..++...|++
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCh
Confidence 555555500 0 000 00001555555555555554321 1344455555555555555
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
++|...|++..+. . .+...+..+..++...|++++|...|++..+..+. +...+..+...+...|++++|+..+++
T Consensus 135 ~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 135 DKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555442 1 34444555555555555555555555555554332 444455555555555555555555554
Q ss_pred H
Q 037620 282 M 282 (330)
Q Consensus 282 ~ 282 (330)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-17 Score=126.48 Aligned_cols=238 Identities=10% Similarity=0.048 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMI 87 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll 87 (330)
...+......+...|++++|+..|+...+.. |.+...+..+...+...|++++|+..+++..+....++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566777778888888888888877743 33555777777788888888888888888877421121 23467777
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.++...|++++|++.|++..+.. +.+..++..+..+|...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888877765 5566777777778888888888888887777662 344555665552333345777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHhCCCHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR---TEEAYSVFKRMSRKPGTEPT------VSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 238 (330)
+|...+++..+.. +.+...+..+...+...|+ +++|...+++..+.....|+ ..+|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 7777777776653 2234555556666666665 55566666655442111122 134445555555555555
Q ss_pred HHHHHHHHHHhCC
Q 037620 239 MAMRIWDEMKARG 251 (330)
Q Consensus 239 ~a~~~~~~~~~~~ 251 (330)
+|...+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5555555555543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=124.75 Aligned_cols=230 Identities=12% Similarity=0.030 Sum_probs=106.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP----TYNAVVGAYC 161 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 161 (330)
....+...|++++|+..|++..+.. |.+...+..+..+|...|++++|.+.++++.+.+ ++.. .|..+...+.
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence 3444444455555555555544443 3333344444445555555555555555544421 1111 2444555555
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
..|++++|...+++..+... .+..++..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544321 23345555555555555555555555555441 2223334444441222333555555
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCC---hhHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHhcCchHHHH
Q 037620 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDK---LDDACKYFQEMLDIG-IRPP------GQLFSNLKQALRDEGMEETAV 311 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 311 (330)
..++++.+.... +...+..+..++...|+ +++|...++++.+.. -.|+ ...+..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555555544322 23444444455554454 555555555554321 0111 134444555555555555555
Q ss_pred HHHHHHHhcCC
Q 037620 312 VLAQKIDKLRK 322 (330)
Q Consensus 312 ~~~~~~~~~~~ 322 (330)
..+++..+..+
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 55555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-17 Score=127.72 Aligned_cols=247 Identities=13% Similarity=-0.041 Sum_probs=154.2
Q ss_pred hccChHHHHHHHHHHHhCCC---CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGF---EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34666677777776665421 1134556666666777777777777777766654 4556667777777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
|...++++.+.. +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777776653 3355666677777777777777777777776643 3333333344444566777777777766654
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc---cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 037620 214 KPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP---VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP 290 (330)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 290 (330)
. .+++...+ .++..+...++.++|...++...+..... +...+..+...+...|++++|...++++.+.. |+
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 2 22333333 35666677777777877777766542211 14677778888888888888888888888643 32
Q ss_pred hhhHHHHHHHHHhcCchHHHHHHH
Q 037620 291 GQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 223345666777888777665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-15 Score=129.17 Aligned_cols=310 Identities=10% Similarity=0.006 Sum_probs=224.3
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhC--------CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC----
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKR--------RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD---- 74 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 74 (330)
+.....||.+..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667999999999999999999999886541 12334578999999999999999999999887653
Q ss_pred -C-C-CCChHHHHHHHHHHhc--cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH---hccCcHHHHHHHHHHHHhcCC
Q 037620 75 -G-F-EPDVVSYGIMINAHCS--AKRYDEAVELFREMEATNCKPSPHIFCTLINGL---GSEKRLSEALQFFGQSKKRGF 146 (330)
Q Consensus 75 -~-~-~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 146 (330)
+ . .....++..+..++.. .+++++|+..|++..+.. |.++..+..+..++ ...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 1 1134566655555544 457999999999999876 56677776666554 44567788999999888774
Q ss_pred CCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 147 EPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
+.+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...+++..+. .+.+..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 3455666666555544 467889999999988764 346778899999999999999999999998862 333455
Q ss_pred HHHHHHHHHHhC-------------------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 223 TYEIVVRMFCYN-------------------AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 223 ~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
++..+..+|... +.++.|...++...+.... +..++..+...+...|++++|...|++.+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 666666555332 3456788888887776544 55678889999999999999999999999
Q ss_pred hcCCCCChh--hHHHHHH-HHHhcCchHHHHHHHHHHHhcCC
Q 037620 284 DIGIRPPGQ--LFSNLKQ-ALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 284 ~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+....+... .+..+.. .....|++++|+..+++..+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 765333221 2223332 24578999999999998877654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-17 Score=127.95 Aligned_cols=246 Identities=9% Similarity=-0.044 Sum_probs=196.4
Q ss_pred HccCChHHHHHHHHHHhhCCC---CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 21 CKSRHVERAQEVFDKMKKRRF---DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
...|++++|+..|+.+.+... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 456889999999999988532 1246788899999999999999999999999875 447889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
+|.+.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999876 6678999999999999999999999999999873 454455555566677899999999998887
Q ss_pred HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-----VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
... +++...+ .++..+...++.++|...+...... .|+ ..++..+...+...|++++|...|++..+..+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 753 3344444 3677778888899999999988652 221 46788899999999999999999999988743
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
. + +.....++...|++++|+..+
T Consensus 247 ~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 H-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T-T---CHHHHHHHHHHHHHHHC----
T ss_pred h-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 2 333355667788888887766
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-16 Score=127.89 Aligned_cols=228 Identities=7% Similarity=0.030 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc-HHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR-YDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
.|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|+..|+++++.+ +.+..+|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34444444444555555555555555442 2234444445555555553 555555555555444 34444555555555
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHH
Q 037620 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEA 204 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 204 (330)
...|++++|+..++++.+.. +.+...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 55555555555555555443 234444555555555555555555555555544321 34445555555544 3333444
Q ss_pred -----HHHHHHhhcCCCCCCchHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC-------
Q 037620 205 -----YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA--QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED------- 270 (330)
Q Consensus 205 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 270 (330)
+..+++... -.+-+...|..+...+...| ++++|.+.+.++ +... .+...+..+..+|.+.|
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccch
Confidence 244444443 11223344445555555544 355555555554 2221 13444455555554432
Q ss_pred --ChhHHHHHHHHH
Q 037620 271 --KLDDACKYFQEM 282 (330)
Q Consensus 271 --~~~~a~~~~~~~ 282 (330)
..++|+.+++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 135555555555
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-16 Score=127.71 Aligned_cols=246 Identities=9% Similarity=0.040 Sum_probs=177.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC-hHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN-LLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
...|+.+...+.+.|++++|+..++.+++.. |-+..+|+.+..++...|+ +++|+..|+++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4557777777888888888888888887743 4466778888888888886 888888888888775 336777888888
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-hCChh
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW-SMRIN 167 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (330)
++...|++++|+..|+++++.+ +-+..+|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888776 6677888888888888888888888888888774 4466778888888777 55546
Q ss_pred HH-----HHHHHHHHHcCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-----
Q 037620 168 DA-----YRMMDEMRKCGIGPNTRTYDIVLHHLIKAG--RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA----- 235 (330)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 235 (330)
+| +..+++...... -+...|..+...+...| ++++|...+..+ + ..+.+...+..+..+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 66 467777776542 25667777777777776 577888888777 3 23445667777777777763
Q ss_pred ----CHHHHHHHHHHH-HhCCCCccHHHHHHHHH
Q 037620 236 ----QVDMAMRIWDEM-KARGVLPVMHMYSTLIN 264 (330)
Q Consensus 236 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 264 (330)
..++|.++++++ .+.+.. ....|..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~ 361 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGR 361 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 247788888887 554322 3344444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-15 Score=116.38 Aligned_cols=224 Identities=12% Similarity=0.022 Sum_probs=175.5
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
+..++..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677778888888888888888888888873 255677778888888 888888888888888765 667778
Q ss_pred HHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 120 TLINGLGS----EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 120 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
.+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 888888888888888774 66777888888888 888888888888888765 55667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 037620 192 LHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY----NAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263 (330)
Q Consensus 192 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (330)
...|.. .+++++|...+++..+. .+...+..+...|.. .+++++|...+++..+.+. ...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 777777 78888888888887762 245566777777888 8888888888888877643 45677777
Q ss_pred HHHhc----cCChhHHHHHHHHHHhcC
Q 037620 264 NSLCH----EDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 264 ~~~~~----~~~~~~a~~~~~~~~~~~ 286 (330)
..|.. .+++++|...+++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 788888888888887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-14 Score=123.81 Aligned_cols=167 Identities=12% Similarity=0.042 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHh-------hCChh-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 037620 149 EAPTYNAVVGAYCW-------SMRIN-------DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 149 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (330)
+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~- 349 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA- 349 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-
Confidence 44455555555443 45554 5556665555421222345555555555556666666666665554
Q ss_pred CCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH-HhccCChhHHHHHHHHHHhcCCCCCh
Q 037620 215 PGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS-LCHEDKLDDACKYFQEMLDIGIRPPG 291 (330)
Q Consensus 215 ~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (330)
..|+ ...|...+..+.+.|++++|..+|++..+.... +...|...+.. +...|+.++|..+|++.++.. +.+.
T Consensus 350 --~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~ 425 (530)
T 2ooe_A 350 --IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 425 (530)
T ss_dssp --SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCH
T ss_pred --ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCH
Confidence 1222 124555555555555555555555555543211 12222211111 223455555555555555432 2234
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 292 QLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
..|..++..+.+.|+.++|..++++....
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 45555555555555555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-15 Score=115.52 Aligned_cols=224 Identities=12% Similarity=0.052 Sum_probs=165.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhh----ccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ----QKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
++.++..+...+...|++++|...|+...+. .+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777777888888888888877773 355667777777777 788888888888877764 666777
Q ss_pred HHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 85 IMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEALQFFGQSKKRGFEPEAPTYNAV 156 (330)
Q Consensus 85 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (330)
.+...+.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777664 56677777777777 788888888888877765 45566677
Q ss_pred HHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 037620 157 VGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVV 228 (330)
Q Consensus 157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 228 (330)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHH
Confidence 777776 778888888888777753 45667777777777 78888888888877662 1 245566677
Q ss_pred HHHHh----CCCHHHHHHHHHHHHhCC
Q 037620 229 RMFCY----NAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 229 ~~~~~----~~~~~~a~~~~~~~~~~~ 251 (330)
..|.. .+++++|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888777765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=118.16 Aligned_cols=201 Identities=13% Similarity=0.056 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666677777777777777777776654 4566667777777777777777777777766653 3355566666666
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
+...|++++|...++++...+..| +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 666777777777776665522222 3455566666666666666666666666542 2223555666666666666666
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
+|...++++.+.... +...+..+...+...|++++|...++++.+.
T Consensus 193 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666654332 4455566666666666666666666666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-15 Score=117.29 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5677888888899999999999999988764 4467888888899999999999999999988875 5678888889999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
|...|++++|.++++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732233 55677888888999999999999999988864 3357788889999999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
|...++.+.+ ..+.+...+..+...+...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999876 234566678888888999999999999999988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-15 Score=128.31 Aligned_cols=308 Identities=10% Similarity=-0.015 Sum_probs=211.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhC-----C-C-CCChHHHHHHHHHHhh--ccChHHHHHHHHHHHhCCCCCC
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-----R-F-DPDIKSYTILLEGWGQ--QKNLLSMNEVYREMKDDGFEPD 79 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 79 (330)
...+|+.+..+|...|++++|...++...+. + . .....++..+..++.. .+++++|++.|++..+.. +-+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4567999999999999999999999887642 1 1 1234566665555544 457899999999999874 224
Q ss_pred hHHHHHHHHH---HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh----ccCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 80 VVSYGIMINA---HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG----SEKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 80 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
...+..+..+ +...++.++|++.+++..+.+ +.+..++..+...+. ..+++++|.+.+++..... +.+..+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 5555555544 344577788999999988876 666777766655444 4567889999999988874 557778
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHhhc
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA-------------------GRTEEAYSVFKRMSR 213 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~ 213 (330)
+..+...|...|++++|...+++..+... .+..++..+..+|... +..+.|...++...+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 89999999999999999999999988643 3556666666555322 235677888887765
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH--HHHHHHH-HHhccCChhHHHHHHHHHHhcCC---
Q 037620 214 KPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH--MYSTLIN-SLCHEDKLDDACKYFQEMLDIGI--- 287 (330)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--- 287 (330)
. .+.+..++..+...+...|++++|...|++..+....+... .+..+.. .....|++++|+..+++.++...
T Consensus 329 ~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 329 A--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp H--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred c--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 2 23345577889999999999999999999998876544321 2233332 34578999999999888765321
Q ss_pred --------------------CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 288 --------------------RPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 288 --------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+..+|..+...|...|++++|.+.+++..+.+.
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34567889999999999999999999999987665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-15 Score=115.51 Aligned_cols=203 Identities=11% Similarity=-0.049 Sum_probs=137.2
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45666777777777888888888887777665 5566777777777777788888887777777663 345666777777
Q ss_pred HHHhh-CChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 037620 159 AYCWS-MRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (330)
.+... |++++|...++.+...+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 77777 77777777777776622222 2456666777777777777777777776652 22345566667777777777
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
+++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777666543124555666666666777777777777776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=121.65 Aligned_cols=196 Identities=16% Similarity=0.196 Sum_probs=82.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ---------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 333334444444444444444444332 3333444444444444444444444444444332 22333444444444444
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 243 (330)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444444432 123334444444444555555555555444431 122334444555555555555555555
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 244 WDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
++++.+.... +..++..+..++...|++++|...++++.+.
T Consensus 182 ~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 182 FAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555444322 3445555555555555555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=121.02 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555556666666666666666666543 2345556666666666666666666666666554 4455666666666
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666553 3345566666666666666666666666666543 22455666666666677777777
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 205 YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
...++++.+. .+.+..++..+..++...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777666552 22345566666777777777777777777766654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-15 Score=114.87 Aligned_cols=199 Identities=10% Similarity=0.004 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
+..+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444555555555555555555555554421 2234445555555555555555555555554442 2234444445555
Q ss_pred Hhcc-CcHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 90 HCSA-KRYDEAVELFREMEATNC-KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 90 ~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
+... |++++|...++++.+.+. +.+..++..+..++...|++++|...+.++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 555555555555444111 1123444444444555555555555554444432 223344444444444444444
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
+|...++.........+...+..+...+...|+.+++..+++.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44444444443321123333334444444444444444444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=130.82 Aligned_cols=300 Identities=14% Similarity=0.068 Sum_probs=224.8
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHhhccChHHHHHHHHHHHhC----CCCC
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD----IKSYTILLEGWGQQKNLLSMNEVYREMKDD----GFEP 78 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 78 (330)
.+....+......+...|++++|...|+...+.. +.+ ..+|..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4455667788889999999999999999998853 223 357888889999999999999999987643 2111
Q ss_pred -ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHhccCc--------------------HH
Q 037620 79 -DVVSYGIMINAHCSAKRYDEAVELFREMEATN-----CKPSPHIFCTLINGLGSEKR--------------------LS 132 (330)
Q Consensus 79 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~--------------------~~ 132 (330)
...++..+...+...|++++|...+++..+.. ......++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 25577788899999999999999999876542 01124578888999999999 99
Q ss_pred HHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHHHcCCHH
Q 037620 133 EALQFFGQSKKR----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI-GPN----TRTYDIVLHHLIKAGRTE 202 (330)
Q Consensus 133 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 202 (330)
+|...+.+..+. +. +....++..+...+...|++++|...+++...... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876543 11 11234678888999999999999999998765311 111 237888889999999999
Q ss_pred HHHHHHHHhhcCC---CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CC-ccHHHHHHHHHHHhccCChh
Q 037620 203 EAYSVFKRMSRKP---GTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG----VL-PVMHMYSTLINSLCHEDKLD 273 (330)
Q Consensus 203 ~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~ 273 (330)
+|...+++..... +..+ ...++..+...+...|++++|...+++..+.. .. ....++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999876411 1111 14577888999999999999999999876531 11 12457788889999999999
Q ss_pred HHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCch
Q 037620 274 DACKYFQEMLDI----GI-RPPGQLFSNLKQALRDEGME 307 (330)
Q Consensus 274 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 307 (330)
+|...+++..+. +. .....++..+...+...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999999988753 21 11245666777777777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-16 Score=128.28 Aligned_cols=278 Identities=14% Similarity=0.080 Sum_probs=212.5
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CC-C
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD----VVSYGIMINAHCSAKRYDEAVELFREMEAT----NC-K 112 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~ 112 (330)
......+......+...|++++|...|+++.+.+.. + ..++..+...+...|++++|...+++.... +. +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888899999999999999999987422 3 357788889999999999999999987543 11 2
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhhCC--------------------hh
Q 037620 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PE----APTYNAVVGAYCWSMR--------------------IN 167 (330)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 167 (330)
....++..+...|...|++++|...+.+..+.... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23567888899999999999999999887654110 11 3478888899999999 99
Q ss_pred HHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHHHhCCCHH
Q 037620 168 DAYRMMDEMRKC----GIG-PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT----VSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 168 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 238 (330)
+|...+++.... +.. ....++..+...+...|++++|...+++..+.....++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 111 12356788889999999999999999987642111122 337888899999999999
Q ss_pred HHHHHHHHHHhCC----CCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCchH
Q 037620 239 MAMRIWDEMKARG----VLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR-PP----GQLFSNLKQALRDEGMEE 308 (330)
Q Consensus 239 ~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 308 (330)
+|...+++..+.. ..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999876531 111 1457788899999999999999999998753111 11 557788899999999999
Q ss_pred HHHHHHHHHHhc
Q 037620 309 TAVVLAQKIDKL 320 (330)
Q Consensus 309 ~a~~~~~~~~~~ 320 (330)
+|...+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=131.29 Aligned_cols=275 Identities=16% Similarity=0.069 Sum_probs=191.0
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHHHhc----C-CCCChH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV----VSYGIMINAHCSAKRYDEAVELFREMEAT----N-CKPSPH 116 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 116 (330)
..+..+...+...|++++|+..|+++.+.+.. +. ..+..+..++...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445666778888888888888888876322 32 46777778888888888888888877653 1 133456
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhhCC-----------------hhHHHHHHH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRG-----FEPEAPTYNAVVGAYCWSMR-----------------INDAYRMMD 174 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 174 (330)
++..+...|...|++++|...+.++.+.. .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67778888888888888888887765531 11234467777888888888 888888877
Q ss_pred HHHHc----CC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHH
Q 037620 175 EMRKC----GI-GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT----VSTYEIVVRMFCYNAQVDMAMRIWD 245 (330)
Q Consensus 175 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 245 (330)
+.... +. .....++..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76442 11 112346777788888889999888888877641111111 2367778888888999999999888
Q ss_pred HHHhCCCC-----ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 246 EMKARGVL-----PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI-----RPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 246 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
+..+.... ....++..+...+...|++++|...+++.++... .....++..+...|.+.|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77653111 1245677788888889999999998888765310 1113467778888888999999988888
Q ss_pred HHHhcC
Q 037620 316 KIDKLR 321 (330)
Q Consensus 316 ~~~~~~ 321 (330)
+..+..
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 876543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=125.15 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC----C-ccH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV----L-PVM 256 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~ 256 (330)
..+..+...+...|++++|...+++..+.....+ ...++..+...+...|++++|...+++..+... . ...
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3555666667777777777777766543110001 123566777777788888888888777654311 1 114
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcC----C-CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 257 HMYSTLINSLCHEDKLDDACKYFQEMLDIG----I-RPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
.++..+...+...|++++|...+++..+.. - .....++..+...+.+.|++++|...+++..+..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 566777778888888888888888776421 0 1113466677888888888888888888877654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=130.69 Aligned_cols=275 Identities=14% Similarity=0.081 Sum_probs=211.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh----HHHHHHHHHHhhccChHHHHHHHHHHHhC----C-CCCCh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI----KSYTILLEGWGQQKNLLSMNEVYREMKDD----G-FEPDV 80 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 80 (330)
...+..+...+...|++++|+..|+...+.. +.+. ..|..+...+...|++++|+..+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445567778899999999999999998853 2233 47888899999999999999999988754 1 12245
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHhccCc-----------------HHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATN-----CKPSPHIFCTLINGLGSEKR-----------------LSEALQFF 138 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 138 (330)
.++..+...+...|++++|...+++..+.. .+....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888899999999999999999876541 12345678888999999999 99999998
Q ss_pred HHHHhc----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 139 GQSKKR----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PN----TRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 139 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
.+..+. +. ......+..+...+...|++++|...+++..+.... .+ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887543 11 112347788889999999999999999988653110 11 237788889999999999999999
Q ss_pred HHhhcCCCCC----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 209 KRMSRKPGTE----PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-----VLPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 209 ~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
++........ ....++..+...+...|++++|...+++..+.. ......++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8876411111 124577888999999999999999999887541 1112457888899999999999999999
Q ss_pred HHHHhc
Q 037620 280 QEMLDI 285 (330)
Q Consensus 280 ~~~~~~ 285 (330)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-14 Score=111.23 Aligned_cols=234 Identities=8% Similarity=0.022 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHhhc----cCh----HHHHHHHHHHHhCCCCCChHHHHHHHHHHhc-------cCcH-------HHHHHH
Q 037620 45 IKSYTILLEGWGQQ----KNL----LSMNEVYREMKDDGFEPDVVSYGIMINAHCS-------AKRY-------DEAVEL 102 (330)
Q Consensus 45 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~ 102 (330)
...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666554332 232 56777777777653 3466677777766653 3664 777788
Q ss_pred HHHHHhc-CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 103 FREMEAT-NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-AP-TYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
|++..+. . |.+...|..++..+.+.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.
T Consensus 87 ~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 87 YERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8777763 3 445667777777777778888888888877765 333 33 6777777777777788888777777765
Q ss_pred CCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCc--c
Q 037620 180 GIGPNTRTYDIVLHHLI-KAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-VLP--V 255 (330)
Q Consensus 180 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~ 255 (330)
.. .+...|........ ..|++++|..+|++..+. .+.+...|..++..+...|++++|..+|++..+.. ..| .
T Consensus 164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 32 23444443333222 257777777777777652 22345667777777777777777777777777652 233 3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
...|..++......|+.+.|..+++++.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677777777777777777777777754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-16 Score=123.43 Aligned_cols=275 Identities=13% Similarity=0.079 Sum_probs=208.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHhhccChHHHHHHHHHHHhC----CCC-CCh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD----IKSYTILLEGWGQQKNLLSMNEVYREMKDD----GFE-PDV 80 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 80 (330)
...+......+...|++++|...|+.+.+.. +.+ ...+..+...+...|++++|.+.+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445666778899999999999999998853 223 367888899999999999999999987653 111 235
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-CCC----hHHHHHHHHHHhccCc--------------------HHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNC-KPS----PHIFCTLINGLGSEKR--------------------LSEAL 135 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 135 (330)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6778888999999999999999998765320 111 3478888899999999 99999
Q ss_pred HHHHHHHhc----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC----C-CCcHHHHHHHHHHHHHcCCHHHHH
Q 037620 136 QFFGQSKKR----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG----I-GPNTRTYDIVLHHLIKAGRTEEAY 205 (330)
Q Consensus 136 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~ 205 (330)
+.+.+.... +. ......+..+...+...|++++|...+++..+.. . .....++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876542 11 1123467788889999999999999999876521 1 111237788889999999999999
Q ss_pred HHHHHhhcCCCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHHhccCChhHHH
Q 037620 206 SVFKRMSRKPGTEPT----VSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-----VLPVMHMYSTLINSLCHEDKLDDAC 276 (330)
Q Consensus 206 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (330)
..+++.........+ ..++..+...+...|++++|...+++..+.. ......++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999987641111111 4567888899999999999999999876531 1112446778899999999999999
Q ss_pred HHHHHHHhc
Q 037620 277 KYFQEMLDI 285 (330)
Q Consensus 277 ~~~~~~~~~ 285 (330)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-13 Score=110.01 Aligned_cols=239 Identities=8% Similarity=0.081 Sum_probs=188.6
Q ss_pred hhhHHHHHHHHHcc----CCh----HHHHHHHHHHhhCCCCCChHHHHHHHHHHh-------hccCh-------HHHHHH
Q 037620 10 LPDFNRLIDTLCKS----RHV----ERAQEVFDKMKKRRFDPDIKSYTILLEGWG-------QQKNL-------LSMNEV 67 (330)
Q Consensus 10 ~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 67 (330)
...|...+..-.+. ++. ++|..+|+..... .|.+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45677777765554 233 6888999999884 3567888888887775 35886 899999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhcCC
Q 037620 68 YREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPH-IFCTLINGLGSEKRLSEALQFFGQSKKRGF 146 (330)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (330)
|++..+.-.+-+...|..++..+.+.|++++|.++|+++.+.. +.+.. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 9999983113366789999999999999999999999999864 33444 89999999999999999999999999874
Q ss_pred CCChhhHHHHHHHHH-hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC--chHH
Q 037620 147 EPEAPTYNAVVGAYC-WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP--TVST 223 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 223 (330)
+++...|........ ..|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++.......+| ....
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344555554443322 3699999999999998763 33678899999999999999999999999988433454 3567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
|..++......|+.+.|..+++++.+..+
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 88889989999999999999999987643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-14 Score=118.40 Aligned_cols=299 Identities=12% Similarity=0.102 Sum_probs=211.0
Q ss_pred HHccCChHHHHHHHHHHhhC--CC--CCChHHHHHHHHH--HhhccChHHHH-----------HHHHHHHhCCCCCChHH
Q 037620 20 LCKSRHVERAQEVFDKMKKR--RF--DPDIKSYTILLEG--WGQQKNLLSMN-----------EVYREMKDDGFEPDVVS 82 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 82 (330)
+.+.+++++|..+++++.+. .. .++...|..++.. ....+..+.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 45789999999999998763 22 2333444444322 22233344444 666666543 112122
Q ss_pred ------HHHHHHHHhccCcHHHHHHHHHHHHhc--CCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-C--
Q 037620 83 ------YGIMINAHCSAKRYDEAVELFREMEAT--NCKP---SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-P-- 148 (330)
Q Consensus 83 ------~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-- 148 (330)
+......+...|++++|...|++..+. ..+. ...++..+..+|...|+++.|...+.+..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 223566788899999999999998764 1111 3478889999999999999999999988654111 1
Q ss_pred ---ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC
Q 037620 149 ---EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PN----TRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGT 217 (330)
Q Consensus 149 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 217 (330)
...+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. .+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2356888899999999999999999987653111 11 247888999999999999999999987651 123
Q ss_pred -CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCccHHHHHHHHHHHhccCC---hhHHHHHHHHHHhcCCCC
Q 037620 218 -EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GVLPVMHMYSTLINSLCHEDK---LDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 289 (330)
+....++..+...+...|++++|...+++..+. +-......+..+...+...|+ +++|+.++++.. ..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence 334567889999999999999999999987653 112123345678888899999 777777777662 1122
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
....+..+...|...|++++|...+++..+...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999998876443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-15 Score=124.76 Aligned_cols=212 Identities=8% Similarity=-0.013 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL-SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
+++++..+++..... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555544433 34556666666666666666 66666666665553 3345566666666666666666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC--------CCH
Q 037620 175 EMRKCGIGPNTRTYDIVLHHLIKA---------GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN--------AQV 237 (330)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 237 (330)
+..+.. |+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 666542 4455566666666666 6666666666666541 223445566666666666 666
Q ss_pred HHHHHHHHHHHhCCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666655330 255566666666666677777777666666543 234455566666666666666665433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-13 Score=123.09 Aligned_cols=254 Identities=12% Similarity=0.164 Sum_probs=152.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 3355667777888888888877531 2222333332 5566777777766442 466777777777788
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (330)
|++++|+..|.+. .+...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 8888887777553 456667777777888888888888777766653 33333344777777777766433332
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 1 234555666777777777777777777764 256677777777777777777776542
Q ss_pred ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444443322 1223344444444555555555555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-14 Score=103.92 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=100.2
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
++.+|..+...+...|++++|++.|++..+.. |-+..+|..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44556666666666666666666666666532 3355566666666666666666666666665553 224455555556
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
.+...++++.+...+.+..... +.+..++..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665554 4455566666666666666666666666665553 3345556666666666666666
Q ss_pred HHHHHHHHHH
Q 037620 169 AYRMMDEMRK 178 (330)
Q Consensus 169 a~~~~~~~~~ 178 (330)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=122.77 Aligned_cols=213 Identities=9% Similarity=0.000 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH-HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY-DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFG 139 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (330)
+++++..++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777766553 44788888999999999999 99999999999886 6678999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhh---------CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc--------CCHH
Q 037620 140 QSKKRGFEPEAPTYNAVVGAYCWS---------MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA--------GRTE 202 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 202 (330)
+..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99987 46678888999999999 99999999999998864 33678889999999988 9999
Q ss_pred HHHHHHHHhhcCCCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 203 EAYSVFKRMSRKPGTE---PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
+|...|++..+. .+ .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998872 22 36778899999999999999999999999887654 6677888888899999998888755
Q ss_pred HH
Q 037620 280 QE 281 (330)
Q Consensus 280 ~~ 281 (330)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=122.22 Aligned_cols=247 Identities=11% Similarity=0.063 Sum_probs=118.6
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------C
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDD-------GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT------N 110 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 110 (330)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666677777777777777766652 11223455566666666667777777666666543 1
Q ss_pred -CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC
Q 037620 111 -CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR------GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182 (330)
Q Consensus 111 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (330)
.+....++..+...|...|++++|...+.++.+. +. +.....+..+...+...|++++|...+++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 1223445555666666666666666666655443 11 1122334444555555555555555555444320
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-------CCc-
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-------VLP- 254 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~- 254 (330)
+.... ...+....++..+...+...|++++|...++++.+.. ..+
T Consensus 184 --------------------------~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 184 --------------------------QTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp --------------------------HHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------------------------HHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 00000 0011112234444444555555555555554444310 000
Q ss_pred ------cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 255 ------VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 255 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
....+..+...+...+.+.++...++...... +....++..+..+|.+.|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122223333344555566666666655422 234556777777788888888888888777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-13 Score=101.68 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
++..|..+...+...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555555443 2244445555555555555555555555554443 334444444445
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
.+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5555555555555555544442 2234444444445555555555555555444432 1233444444444445555555
Q ss_pred HHHHHHHhhc
Q 037620 204 AYSVFKRMSR 213 (330)
Q Consensus 204 a~~~~~~~~~ 213 (330)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=119.19 Aligned_cols=172 Identities=11% Similarity=0.057 Sum_probs=138.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhC-------CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-----
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-------RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD----- 74 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 74 (330)
+.+..++..+...+...|++++|..+++.+.+. ..+....++..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999998873 22335677888999999999999999999998764
Q ss_pred -C-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------C-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-
Q 037620 75 -G-FEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT------N-CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR- 144 (330)
Q Consensus 75 -~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 144 (330)
+ .+....++..+...+...|++++|...+++..+. + .+....++..+...+...|++++|.++++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1234567888999999999999999999998764 2 1334567888999999999999999999998764
Q ss_pred -----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 145 -----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 145 -----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
+. +....++..+...+...|++++|...++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 22345677888889999999999999988875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-12 Score=116.62 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
.+|..+..++...|++++|++.|... -|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 34444444444444444444444322 134444444444444444444444444444332 1111122244444
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
++.+++++...+ .. .++...|..+...|...|++++|..+|..+ ..|..+..++.+.|++++|.
T Consensus 1178 AKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 444444422211 11 223333444455555555555555555442 24455555555555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.....
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 555443 133455555555555555555555444321 24445667777788888888888888776655
Q ss_pred CCCccHHHHHHHHHHHhc--cCChhHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCchHHHHH
Q 037620 251 GVLPVMHMYSTLINSLCH--EDKLDDACKYFQEMLDIGIRP------PGQLFSNLKQALRDEGMEETAVV 312 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 312 (330)
. +-....|..+...|++ -++..++.++|..-. ++++ +...|..++..|.+.|+++.|..
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4 2244556555555554 334444555444332 2222 45678888888888888888873
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-13 Score=110.31 Aligned_cols=313 Identities=12% Similarity=0.008 Sum_probs=215.6
Q ss_pred CCCChhhHHHHHHHH--HccCChHHHHHHHHHHhhC--CC--CCChHHHHHHHHH--HhhccChHHHH---------HHH
Q 037620 6 LKQELPDFNRLIDTL--CKSRHVERAQEVFDKMKKR--RF--DPDIKSYTILLEG--WGQQKNLLSMN---------EVY 68 (330)
Q Consensus 6 ~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 68 (330)
+.|+..+-+.|-..| ...+++++|..+++++.+. .. .++...|-.++.. ..-.+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456666667777777 7899999999999987652 12 2234444444432 11122333333 666
Q ss_pred HHHHhCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CC---CChHHHHHHHHHHhccCcHHHHHHHHH
Q 037620 69 REMKDDGFEPDV----VSYGIMINAHCSAKRYDEAVELFREMEATN--CK---PSPHIFCTLINGLGSEKRLSEALQFFG 139 (330)
Q Consensus 69 ~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (330)
+.+.....+.+. ..+......+...|++++|+..|++..+.. ++ ....++..+..+|...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 665432111111 123334556778999999999999987642 11 135678889999999999999999998
Q ss_pred HHHhcCC-----C-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 140 QSKKRGF-----E-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC----GIG-PNTRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 140 ~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
+..+... . ....+++.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8765311 1 12456788899999999999999999887652 111 12356778889999999999999999
Q ss_pred HHhhcC---CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CCccHHHHHHHHHHHhccCC---hhHHHHH
Q 037620 209 KRMSRK---PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG----VLPVMHMYSTLINSLCHEDK---LDDACKY 278 (330)
Q Consensus 209 ~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 278 (330)
++.... .+.+....++..+...+...|++++|...+++..+.. -......+..+...+...++ +.+|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 987651 0223336678889999999999999999999987642 22223456666677778888 7777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 279 FQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
+++.. ..+.....+..+...|...|++++|...+++..+.
T Consensus 326 ~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77632 11223456677889999999999999999987653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-12 Score=105.01 Aligned_cols=272 Identities=8% Similarity=-0.028 Sum_probs=194.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChH----HHHHHHHHHhhccChHHHHHHHHHHHhCCC-CCC----hHHH
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIK----SYTILLEGWGQQKNLLSMNEVYREMKDDGF-EPD----VVSY 83 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 83 (330)
+......+...|++++|...++.........+.. +++.+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778899999999999988743222222 456677788899999999999998875411 112 2335
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc----CCC--C-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC----Chhh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEAT----NCK--P-SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP----EAPT 152 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 152 (330)
..+...+...|++++|...+++.... +.+ | ...++..+...+...|++++|...+.+........ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778899999999999999987653 211 2 34566778889999999999999999987653211 2345
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc-HHHHH-----HHHHHHHHcCCHHHHHHHHHHhhcCCCCCC--chHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN-TRTYD-----IVLHHLIKAGRTEEAYSVFKRMSRKPGTEP--TVSTY 224 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 224 (330)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++.........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999998875321111 11121 233457799999999999999876221111 12246
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC----CCCccH-HHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKAR----GVLPVM-HMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67788899999999999999887643 222222 3666777888999999999999998864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-14 Score=117.29 Aligned_cols=284 Identities=14% Similarity=0.070 Sum_probs=169.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccCh---HHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNL---LSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.+...+.+.|++++|.++|+...+.| +...+..+...|...|+. ++|..+|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999988765 344455566666667777 8888888888754 4445555665444
Q ss_pred ccC-----cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH---HHHHHHHHHHhcC------------------
Q 037620 92 SAK-----RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS---EALQFFGQSKKRG------------------ 145 (330)
Q Consensus 92 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~------------------ 145 (330)
..+ ++++|+.+|++..+.+ .++ .+..|...|...+..+ .+.+.+......|
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 444 7788999988888766 222 4444555554433211 1222222221111
Q ss_pred --------------CCCChhhHHHHHHHHHhhC---ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc----CCHHHH
Q 037620 146 --------------FEPEAPTYNAVVGAYCWSM---RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA----GRTEEA 204 (330)
Q Consensus 146 --------------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a 204 (330)
...++..+..+...|...| +.++|+..|+...+.|. ++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 1223446777777788788 88888888888887763 3455445666666554 688888
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHH-H--HhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC-----ChhHHH
Q 037620 205 YSVFKRMSRKPGTEPTVSTYEIVVRM-F--CYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED-----KLDDAC 276 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~ 276 (330)
...|++.. +-+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.
T Consensus 237 ~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 88888875 2344555666665 3 45788888888888888776 4556777777666 45 888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhcCC
Q 037620 277 KYFQEMLDIGIRPPGQLFSNLKQALRD----EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 322 (330)
.+|++.. .-+...+..+...|.. ..++++|..++++..+.|.
T Consensus 308 ~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 308 AHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8888876 3356667777777766 3488889999888877665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-12 Score=107.05 Aligned_cols=273 Identities=10% Similarity=-0.000 Sum_probs=194.4
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH----HHHHHHHHHhccCcHHHHHHHHHHHHhcCC-CCC----hHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV----SYGIMINAHCSAKRYDEAVELFREMEATNC-KPS----PHIF 118 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 118 (330)
.......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556778999999999999988764222222 456677788899999999999998765320 111 2345
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC--C--cHHH
Q 037620 119 CTLINGLGSEKRLSEALQFFGQSKKR----GFE--P-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG--P--NTRT 187 (330)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 187 (330)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788899999999999999887653 221 2 2345667888899999999999999998764322 1 2356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-hHHHH----HHHHHHHhCCCHHHHHHHHHHHHhCCCCc---cHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-VSTYE----IVVRMFCYNAQVDMAMRIWDEMKARGVLP---VMHMY 259 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 259 (330)
+..+...+...|++++|...+++.......... ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888899999999999999987642111111 11111 23345779999999999999887643221 12346
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDI----GIRPPG-QLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67788899999999999999988642 211122 36667788899999999999999887643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-12 Score=109.18 Aligned_cols=188 Identities=10% Similarity=0.050 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccC---cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh----CChhHHHHHHHHHHHcCCCCcHHHHH
Q 037620 117 IFCTLINGLGSEK---RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS----MRINDAYRMMDEMRKCGIGPNTRTYD 189 (330)
Q Consensus 117 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (330)
.+..|...|...| +.++|++.|.+..+.| +++...+..+...|... +++++|...|+... .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 4444555555555 5555555555555554 22333333444444333 35555555555544 22 333333
Q ss_pred HHHHH-H--HHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 190 IVLHH-L--IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA-----QVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 190 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
.+... + ...+++++|...|++..+ .+ +...+..|...|. .| ++++|...|++.. .| ++..+..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~ 323 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYY 323 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHH
Confidence 33333 2 234555555555555544 12 3333444444443 22 5555555555544 21 3334444
Q ss_pred HHHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhcC
Q 037620 262 LINSLCH----EDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD----EGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 262 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 321 (330)
+...|.. ..++++|..+|++..+.| +......+...|.. ..++++|..+++...+.|
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 4444433 225555555555555433 12223333333332 234555555555444443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=113.27 Aligned_cols=231 Identities=10% Similarity=0.050 Sum_probs=176.5
Q ss_pred HHHHHhhccChHHHHHHHHHHHhC----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--C----CCChHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDD----GFEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATN--C----KPSPHIFC 119 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 119 (330)
....+...|++++|...|++..+. +-.+ ...++..+..++...|+++.|...+++..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999999865 1111 34678889999999999999999999987541 1 11246788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHHhhCChhHHHHHHHHHHHc----CC-CCcHHHHH
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKRGFE-P----EAPTYNAVVGAYCWSMRINDAYRMMDEMRKC----GI-GPNTRTYD 189 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 189 (330)
.+..+|...|++++|...+.+..+.... + ...++..+..+|...|++++|...+++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999988754211 1 1247888999999999999999999988762 22 33467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC---CCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCc-cHHHHHHH
Q 037620 190 IVLHHLIKAGRTEEAYSVFKRMSRKP---GTEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLP-VMHMYSTL 262 (330)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 262 (330)
.+...+...|++++|...+++..... +.+.....+..+...+...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999876511 111222335678888888998 77777777665 2222 34567788
Q ss_pred HHHHhccCChhHHHHHHHHHHh
Q 037620 263 INSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-11 Score=106.18 Aligned_cols=308 Identities=12% Similarity=0.123 Sum_probs=224.0
Q ss_pred ChhhHHHHHHHHHc---------cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHH-------------hhccChHHHHH
Q 037620 9 ELPDFNRLIDTLCK---------SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGW-------------GQQKNLLSMNE 66 (330)
Q Consensus 9 ~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~ 66 (330)
+...|...+....+ .|+++.|..+|++..+....+....|....... ...+++..|..
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~ 199 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARR 199 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHH
Confidence 45667777776654 789999999999998831111123443322211 13456777777
Q ss_pred HHHHH------HhCC---CCCC--------hHHHHHHHHHHhcc----CcH----HHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 67 VYREM------KDDG---FEPD--------VVSYGIMINAHCSA----KRY----DEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 67 ~~~~~------~~~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
++... .+.. ++|+ ...|...+...... ++. .++..+|++..... |.++..|..+
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~ 278 (530)
T 2ooe_A 200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA 278 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 77653 2221 2443 24666665443322 232 47888999998875 6788899998
Q ss_pred HHHHhc-------cCcHH-------HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc--H
Q 037620 122 INGLGS-------EKRLS-------EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN--T 185 (330)
Q Consensus 122 ~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 185 (330)
+..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 356 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT 356 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch
Confidence 888875 68877 89999999987323456888999999999999999999999999985 343 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
..|...+..+.+.|++++|..+|++..+.... +...|...+.. +...|++++|..+|+...+.... ++..|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 58888999999999999999999999874222 23333332222 34689999999999998876433 6788999999
Q ss_pred HHhccCChhHHHHHHHHHHhcCC-CCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 265 SLCHEDKLDDACKYFQEMLDIGI-RPP--GQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..+.+++.+.-+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999998642 222 34777778888889999999999988876544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-13 Score=96.30 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=91.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555556666666666666666655532 3345555556666666666666666666665542 234555555555666
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHH
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYR 171 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (330)
..|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655543 4445555555555555666666666655555542 2334455555555555555555555
Q ss_pred HHHHHHH
Q 037620 172 MMDEMRK 178 (330)
Q Consensus 172 ~~~~~~~ 178 (330)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-13 Score=117.08 Aligned_cols=167 Identities=14% Similarity=0.057 Sum_probs=141.6
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
-++.+|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346779999999999999999999999988753 3467888899999999999999999999988874 33678888899
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.++...|++++|++.|++..+.+ +-+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988876 6678889999999999999999999999988874 446778888999999999999
Q ss_pred HHHHHHHHHHH
Q 037620 168 DAYRMMDEMRK 178 (330)
Q Consensus 168 ~a~~~~~~~~~ 178 (330)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=94.44 Aligned_cols=162 Identities=13% Similarity=-0.007 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44455555566666666666666655442 2245555555556666666666666666655543 444555555555555
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYS 206 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (330)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5556666555555555442 2344444555555555555555555555554432 1233444444455555555555555
Q ss_pred HHHHhh
Q 037620 207 VFKRMS 212 (330)
Q Consensus 207 ~~~~~~ 212 (330)
.++...
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-12 Score=97.28 Aligned_cols=196 Identities=7% Similarity=-0.041 Sum_probs=153.5
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.|+..+......+...|++++|+..|+...+...+++...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688889999999999999999999999986533778888889999999999999999999999875 3367888999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSP-------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP--EAPTYNAVV 157 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 157 (330)
..++...|++++|+..+++..+.. |.+. .+|..+...+...|++++|.+.++++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999999876 5555 568888889999999999999999998873 22 356777777
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+|...|+ ..++.+...+ ..+...+.... ....+.+++|...+++..+
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 77765543 3344544432 22344444333 2345668999999999886
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-13 Score=115.84 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=149.8
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
|-+..+|+.|...+.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|+..|++.++.+ +-+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3356889999999999999999999999999874 3367889999999999999999999999999887 6778999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
..+|...|++++|++.|++..+.. +.+...++.+..+|...|++++|+..|++..+... -+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 999999999999999999999874 45678999999999999999999999999998643 3678899999999999999
Q ss_pred HHHHHHHHHhhc
Q 037620 202 EEAYSVFKRMSR 213 (330)
Q Consensus 202 ~~a~~~~~~~~~ 213 (330)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-11 Score=94.01 Aligned_cols=100 Identities=17% Similarity=0.021 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3444555555555555555555555555554322344444445555555555555555555555443 334444555555
Q ss_pred HHhccCcHHHHHHHHHHHHhc
Q 037620 124 GLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+|...|++++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 555555555555555555444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-13 Score=103.21 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=158.4
Q ss_pred hccCcHHHHHHHHHHHHh-------cCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------CC-CCChhhHHHH
Q 037620 91 CSAKRYDEAVELFREMEA-------TNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR------GF-EPEAPTYNAV 156 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 156 (330)
...|++++|+..|++..+ ...+....++..+...|...|++++|...+.++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666544 232445778889999999999999999999998764 21 2245678889
Q ss_pred HHHHHhhCChhHHHHHHHHHHHc------C-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCCchHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKC------G-IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK------PGTEPTVST 223 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 223 (330)
...|...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224567888899999999999999999998762 112223567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCc-cHHHHHHHHHHHhccCChhHHHH------HHHHHHhcCCCC
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKAR-------GVLP-VMHMYSTLINSLCHEDKLDDACK------YFQEMLDIGIRP 289 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~~ 289 (330)
+..+...+...|++++|...+++..+. ...+ ....+..+...+...+....+.. .++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988763 1112 22234334334443333333222 2221111 1112
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788899999999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=101.66 Aligned_cols=230 Identities=10% Similarity=0.023 Sum_probs=173.9
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCC-CC----ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CC----CChHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGF-EP----DVVSYGIMINAHCSAKRYDEAVELFREMEATN--CK----PSPHIFC 119 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 119 (330)
....+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556789999999999999886511 12 24577888899999999999999999876531 11 1256788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHH-----cCCCCcHHHHH
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKR----GFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRK-----CGIGPNTRTYD 189 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 189 (330)
.+..+|...|++++|.+.+.+..+. +.. ....++..+..+|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8999999999999999999887653 111 1234678889999999999999999998876 32 33467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCC---CCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCc-cHHHHHHH
Q 037620 190 IVLHHLIKAGRTEEAYSVFKRMSRKPG---TEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLP-VMHMYSTL 262 (330)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 262 (330)
.+...+.+.|++++|...+++..+... .+.....+..+...+...++ +.+|...+++ .+..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 899999999999999999998775222 22233456666677777888 7777777766 22222 33466778
Q ss_pred HHHHhccCChhHHHHHHHHHHh
Q 037620 263 INSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...|...|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998864
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-13 Score=103.41 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=160.6
Q ss_pred hhccChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------C-CCCChHHHHHH
Q 037620 56 GQQKNLLSMNEVYREMKDD-------GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT------N-CKPSPHIFCTL 121 (330)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 121 (330)
...|++++|+..+++..+. ..+....++..+..++...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 22334677888999999999999999999998754 2 23456788899
Q ss_pred HHHHhccCcHHHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc------CCCC-cHHH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKR------G-FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC------GIGP-NTRT 187 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 187 (330)
..+|...|++++|.+.+.++.+. . .+....++..+...+...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1234567888999999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCCc-hHHHHHHHHHHHhCCCHHHHH------HHHHHHHhCCCCc
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRK------PGTEPT-VSTYEIVVRMFCYNAQVDMAM------RIWDEMKARGVLP 254 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~-~~~~~~l~~~~~~~~~~~~a~------~~~~~~~~~~~~~ 254 (330)
+..+...+...|++++|...+++..+. ....+. ...+..+...+...+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998751 011222 233334443333333322222 22222111 1122
Q ss_pred cHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...++..+...|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-10 Score=88.19 Aligned_cols=244 Identities=10% Similarity=0.039 Sum_probs=166.4
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
+-..-.|++..++.-...+.. ......-..+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 444557888888874333221 11223334455777777877642 12244444555444443 322
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
|+..|++..+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888877765 56666667888999999999999999999877653 236677888899999999999999999999
Q ss_pred HHcCCCC-----cHHHHHHHHHH--HHHcC--CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 177 RKCGIGP-----NTRTYDIVLHH--LIKAG--RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 177 ~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
.+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 875 45 35666666666 33334 899999999998763 344223334444888999999999999877
Q ss_pred HhCC---------CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 248 KARG---------VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 248 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
.+.. -+-++.++..+|......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6531 02366777566666666776 8889999998753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-10 Score=88.39 Aligned_cols=246 Identities=9% Similarity=0.029 Sum_probs=171.1
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+-..-.|.+..++.-...+.. ........-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 445567889888874433321 21223333456788888876632 12234444555555444 322
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI-GPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
|...+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888887765 45666667888999999999999999999877653 236678888999999999999999999999
Q ss_pred hcCCCCCC-----chHHHHHHHHHHH--h--CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 212 SRKPGTEP-----TVSTYEIVVRMFC--Y--NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 212 ~~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
.+ ..| +..+...++.++. . .+++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76 455 3555566666633 2 348999999999997663 44233334444899999999999999977
Q ss_pred HhcC---------CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 283 LDIG---------IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 283 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+.. -+.++.++..++......|+ +|.++++++.+..+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 6431 13467777677766666786 889999999887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-11 Score=91.67 Aligned_cols=101 Identities=12% Similarity=-0.013 Sum_probs=63.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---hHHHHHHHHHHhhccChHHHHHHHHHHHhCCC--CCChHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---IKSYTILLEGWGQQKNLLSMNEVYREMKDDGF--EPDVVSY 83 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 83 (330)
+...+-.+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++...|++++|+..|++..+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555666666777777777777777776632 223 45666666777777777777777777766521 1123445
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHHHhcC
Q 037620 84 GIMINAHCS--------AKRYDEAVELFREMEATN 110 (330)
Q Consensus 84 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~ 110 (330)
..+..++.. .|++++|+..|+++.+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 556666666 677777777777766653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=89.84 Aligned_cols=188 Identities=9% Similarity=0.005 Sum_probs=126.6
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCChhh
Q 037620 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKKRGF--EPEAPT 152 (330)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 152 (330)
.+...+..+...+.+.|++++|+..|+++.+.. |.+ ..++..+..+|.+.|++++|...|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356667777788888889999999998888764 334 67778888888888888888888888887631 112345
Q ss_pred HHHHHHHHHh--------hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 037620 153 YNAVVGAYCW--------SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224 (330)
Q Consensus 153 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (330)
+..+..++.. .|++++|...|+++...... +......+.. +..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH-----HHHHH
Confidence 6667777777 88888888888888775321 2222222111 1111000 01124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcc----------CChhHHHHHHHHHHhcC
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLP--VMHMYSTLINSLCHE----------DKLDDACKYFQEMLDIG 286 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 286 (330)
..+...|...|++++|...|+++.+..+.. ....+..+..+|... |++++|...++++++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 566778888888888888888887754321 345667777777755 88888999998888653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.1e-11 Score=80.77 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=77.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.|..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666666666666666665532 3345556666666666666666666666665543 234455555666666
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..|++++|.++++++.... +.+..++..+..++...|++++|...+.++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666665543 344555555666666666666666666655543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=86.97 Aligned_cols=124 Identities=9% Similarity=0.005 Sum_probs=60.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5555556666666666666665554 4455555666666666666666666666655553 3344455555555443332
Q ss_pred --hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 166 --INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
...+...+..... ..|....+.....++...|++++|...|++..+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2223333333221 111222223333344445555555555555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-11 Score=93.06 Aligned_cols=211 Identities=10% Similarity=0.039 Sum_probs=151.2
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC----CCCCC-hHHHHHHHHHHhccCcHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD----GFEPD-VVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a 99 (330)
++++|...|+.. ...|...|++++|.+.|.+..+. +-+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34567789999999998887654 21222 56888899999999999999
Q ss_pred HHHHHHHHhcCC---CC--ChHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhhCChhH
Q 037620 100 VELFREMEATNC---KP--SPHIFCTLINGLGSE-KRLSEALQFFGQSKKRGFEP-E----APTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 100 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 168 (330)
+..|++..+... .+ ...++..+..+|... |++++|+..+++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988765421 11 145788889999986 99999999999887642110 1 3468888999999999999
Q ss_pred HHHHHHHHHHcCCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHHH--hCCCH
Q 037620 169 AYRMMDEMRKCGIGPNT------RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV---STYEIVVRMFC--YNAQV 237 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~--~~~~~ 237 (330)
|...+++.......... ..+..+..++...|++++|...+++..+.....++. ..+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999885433221 156778888999999999999999987622211121 23445566664 45678
Q ss_pred HHHHHHHHHHHhC
Q 037620 238 DMAMRIWDEMKAR 250 (330)
Q Consensus 238 ~~a~~~~~~~~~~ 250 (330)
++|...|+.+...
T Consensus 257 ~~A~~~~~~~~~l 269 (292)
T 1qqe_A 257 SEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHTTSSCC
T ss_pred HHHHHHhccCCcc
Confidence 8888888776553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=91.63 Aligned_cols=237 Identities=10% Similarity=0.035 Sum_probs=167.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHhh--ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 28 RAQEVFDKMKKRRFDPDIKSYTILLEGWGQ--QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (330)
+|.+++.+..+. .+++...| .++ .. .+++++|...|.+. ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466677666663 23332223 222 22 22589999998887 3457788999999999998
Q ss_pred HHhc----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhh-CChhHHHHHHH
Q 037620 106 MEAT----NCKP-SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PE----APTYNAVVGAYCWS-MRINDAYRMMD 174 (330)
Q Consensus 106 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~ 174 (330)
..+. +-++ ...+|+.+..+|.+.|++++|+..+++..+.... .+ ..+++.+...|... |++++|+..++
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7654 2122 2578999999999999999999999988664211 01 35788899999996 99999999999
Q ss_pred HHHHcCCCC-c----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch-----HHHHHHHHHHHhCCCHHHHHHHH
Q 037620 175 EMRKCGIGP-N----TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV-----STYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 175 ~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
+..+..... + ..++..+...+...|++++|...|++..+.....+.. ..+..+..++...|++++|...|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887632110 1 3568889999999999999999999988733222222 15677888899999999999999
Q ss_pred HHHHhCCCCc-c---HHHHHHHHHHHh--ccCChhHHHHHHHHHHh
Q 037620 245 DEMKARGVLP-V---MHMYSTLINSLC--HEDKLDDACKYFQEMLD 284 (330)
Q Consensus 245 ~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 284 (330)
++..+..... + ...+..++.++. ..+++++|+..|+++..
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9987653221 1 123445566664 45678888888877653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-10 Score=79.80 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566666677777777777777776653 2355666666667777777777777777766654 445566666666777
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777666553 334555666666666667777776666666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=87.23 Aligned_cols=175 Identities=9% Similarity=0.020 Sum_probs=133.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHH----------------HHHHHhhccChHHHHHHHHHHHh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTI----------------LLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
+..+-.....+...|++++|+..|+...+.. |-+...|.. +..++.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445556667889999999999999998843 234566777 88999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc--HHHHHHHHHHHHhcCCCCChh
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR--LSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 151 (330)
.. +-+...+..+..++...|++++|+..|++..+.. |.+..++..+..+|...|+ .+.+...+...... .|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhH
Confidence 85 3478899999999999999999999999999987 7788999999988876654 34455555555421 22233
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
.+.....++...|++++|...|++..+. .|+......+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 4444566677789999999999999874 5665444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=102.90 Aligned_cols=173 Identities=7% Similarity=-0.091 Sum_probs=141.5
Q ss_pred hhccChHHHHHHHHHHH--------hCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 56 GQQKNLLSMNEVYREMK--------DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|++.|+++.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 442 4467788888999999999999999999998876 6788899999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 037620 128 EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSV 207 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (330)
.|++++|.+.|+++.+.. +.+...+..+..++.+.|++++ ...|++..+... .+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998874 4467788899999999999999 999999988653 3677888999999999999999999
Q ss_pred HHHhhcCCCCCCc-hHHHHHHHHHHHhCCC
Q 037620 208 FKRMSRKPGTEPT-VSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 208 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 236 (330)
|++..+ ..|+ ...+..+..++...+.
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence 998865 3343 5567777777766554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-08 Score=88.39 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=80.1
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC---hHHHHHHHHHHHhCC-CCCChHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN---LLSMNEVYREMKDDG-FEPDVVS 82 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 82 (330)
+-|...|..++..+.+.+.++.+..+|+.+... .|.+...|...+..-.+.++ ++.+..+|++..... .+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 457788888888888888899999999988874 56677888888887777787 888888888888763 1377778
Q ss_pred HHHHHHHHhccCcH--------HHHHHHHHHHHh-cCC-CC-ChHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRY--------DEAVELFREMEA-TNC-KP-SPHIFCTLING 124 (330)
Q Consensus 83 ~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~ 124 (330)
|...+....+.++. +.+.++|+.... .|. .+ +...|...+..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 87777655554432 334466666543 243 33 34556555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=102.42 Aligned_cols=174 Identities=10% Similarity=-0.022 Sum_probs=146.8
Q ss_pred HccCChHHHHHHHHHHh--------hCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 21 CKSRHVERAQEVFDKMK--------KRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
...|++++|++.++... +. .+.+...+..+...+...|++++|++.|+++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 42 35567889999999999999999999999999874 3477889999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (330)
.|++++|++.|++..+.. +.+...+..+..++.+.|++++ .+.|+++.+.. +.+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999887 6788999999999999999999 99999999875 45678899999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGR 200 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (330)
|++..+... .+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 998877532 235667777777766554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-08 Score=86.28 Aligned_cols=171 Identities=10% Similarity=0.036 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHhhCChhHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--------CCCC-
Q 037620 150 APTYNAVVGAYCWSMRINDAY-RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP--------GTEP- 219 (330)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~- 219 (330)
...|...+..+...|+.++|. .+|++.... .+.+...|...+....+.|+++.|..+|+++.... ...|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 334444444445556666664 666666654 23344455556666666677777777776665410 0012
Q ss_pred -----------chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CChhHHHHHHHHHHhcCC
Q 037620 220 -----------TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 220 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 287 (330)
...+|...+....+.|..+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 12245555555556666677777776666541111222332222222222 3466666666666654 2
Q ss_pred CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 288 RPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+...+...++.....|+.+.|..+|++......
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 23444455555555566666666666666655443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-09 Score=80.48 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEA 108 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (330)
..+..+...|...+++++|+++|++..+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-08 Score=78.40 Aligned_cols=222 Identities=9% Similarity=0.033 Sum_probs=145.3
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc--ChHHHHHHHHHHHhCCCCCChHHHHHHHHHH----hcc---
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK--NLLSMNEVYREMKDDGFEPDVVSYGIMINAH----CSA--- 93 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~--- 93 (330)
....++|+.+++.++... |-+..+|+.--..+...+ ++++++++++.+.....+ +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 344467888888887743 335566777777777777 888888888888877533 566665544444 333
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH--HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC------
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS--EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR------ 165 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 165 (330)
+++++++.+++++.+.+ +-+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|...|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 67788888888888776 667777777777777777777 7888888887765 3466667666666666555
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC-CCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE-AYSVFKRMSRKP-GTEPTVSTYEIVVRMFCYNAQVDMAMRI 243 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 243 (330)
++++++.++.++...+ -|...|+-+-..+.+.|+..+ +..+..++.... ....+...+..++..+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6677777777766543 366677766666666666333 444555544311 1133455666666666666777777777
Q ss_pred HHHHHh
Q 037620 244 WDEMKA 249 (330)
Q Consensus 244 ~~~~~~ 249 (330)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=83.93 Aligned_cols=164 Identities=10% Similarity=0.019 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH-
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA- 89 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 89 (330)
..+......+...|++++|...|+...+.. |.+...+..+...+...|++++|+..+++..... |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 345566677788888888888888877632 4466778888888888888888888888876653 244333222211
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 168 (330)
+...+....|...+++..+.. |.+...+..+..++...|++++|...+.++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112222334677777777665 5567777778888888888888888888877764222 24467777777778888888
Q ss_pred HHHHHHHHHH
Q 037620 169 AYRMMDEMRK 178 (330)
Q Consensus 169 a~~~~~~~~~ 178 (330)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-09 Score=81.70 Aligned_cols=176 Identities=9% Similarity=0.038 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC----ChhHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM----RINDAYRMM 173 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 173 (330)
+|+++|++..+.| ++..+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 56677778888888888888888888887765 56667777777776 6 788888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHh----CCCHHHHHHHH
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTE-PTVSTYEIVVRMFCY----NAQVDMAMRIW 244 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 244 (330)
++..+.+ +...+..+...|.. .+++++|..+|++..+. +.. .+...+..|...|.. .+++++|...|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8887754 55666777777766 67888888888887652 211 125566677777777 67788888888
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhcc------CChhHHHHHHHHHHhcC
Q 037620 245 DEMKARGVLPVMHMYSTLINSLCHE------DKLDDACKYFQEMLDIG 286 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 286 (330)
++..+.+ .+...+..|...|... .+.++|..+|++..+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8877651 2334566666666532 27788888888777766
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-10 Score=88.28 Aligned_cols=167 Identities=9% Similarity=0.018 Sum_probs=89.8
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHH-HHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRT-YDI 190 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 190 (330)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344455555555566666666666666655553 2344555555666666666666666666554432 22221 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcc
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHE 269 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 269 (330)
....+...++.++|...+++... ..+.+...+..+...+...|++++|...++++.+..... +...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22224445555556666655554 123344555566666666666666666666666543321 244566666666666
Q ss_pred CChhHHHHHHHHHH
Q 037620 270 DKLDDACKYFQEML 283 (330)
Q Consensus 270 ~~~~~a~~~~~~~~ 283 (330)
|+.++|...+++.+
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666665544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-08 Score=79.43 Aligned_cols=221 Identities=7% Similarity=-0.024 Sum_probs=162.7
Q ss_pred ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC--cHHHHHHHHHHHHhcCCCCChHHHHHHHHHH----hcc---
Q 037620 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK--RYDEAVELFREMEATNCKPSPHIFCTLINGL----GSE--- 128 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 128 (330)
....++|+++++.++..+ +-+...|+.--.++...+ ++++++++++.+...+ |-+..+|+.-..++ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 344468999999998875 336677888777787788 8999999999998876 66777777655555 444
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC------
Q 037620 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN--DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR------ 200 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 200 (330)
+++++++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++.+.+.... |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78889999999998874 557778877777777888888 889999999887644 66777766666666665
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHHHhCC--CCccHHHHHHHHHHHhccCChhHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD-MAMRIWDEMKARG--VLPVMHMYSTLINSLCHEDKLDDACK 277 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 277 (330)
++++++.++.+.. ..+-|...|+.+...+.+.|+.. .+..+..++.+.+ -..++..+..++..+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7788888877765 24446667777777777777643 3555666655443 12366777888888888888888888
Q ss_pred HHHHHHh
Q 037620 278 YFQEMLD 284 (330)
Q Consensus 278 ~~~~~~~ 284 (330)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-11 Score=83.16 Aligned_cols=121 Identities=10% Similarity=0.039 Sum_probs=57.8
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+...|++++|+..+....... +-+...+..+...|.+.|++++|++.|++..+.+ |.+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 344455555555555544331 1122233344455555555555555555555544 44455555555555555555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHH-HHHHHH
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM-MDEMRK 178 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 178 (330)
...|++..+.. +.+...+..+...|.+.|+++++... +++..+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555442 22344455555555555555443332 344444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-09 Score=81.14 Aligned_cols=192 Identities=13% Similarity=0.065 Sum_probs=118.8
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-C-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH--HHHH
Q 037620 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-P-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT--RTYD 189 (330)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 189 (330)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888899999999999998876311 1 1246777888888999999999999998875432111 2444
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 190 IVLHHLIK------------------AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 190 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
.+..++.. .|++++|...|+++.+... -+...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT--TCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHHHHHHHH----------HHHHHHH----
Confidence 44555544 2445555555555544211 111111110000 0000000
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP--PGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
......+...|.+.|++++|+..|+++++..... ....+..+..++.+.|++++|.+.++.+...++...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0011345667888999999999999998753211 125677888899999999999999998887666543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-11 Score=84.30 Aligned_cols=146 Identities=11% Similarity=-0.031 Sum_probs=116.9
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
|-..+...|++++|+..+....... +-+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445667789999999999887642 2245567788899999999999999999999885 3478899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF-FGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
+++|+..|++..+.+ |-+..++..+..+|.+.|++++|.+. +++..+.. +.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999999887 67889999999999999998776654 58888774 4466777777766666653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-09 Score=81.35 Aligned_cols=185 Identities=8% Similarity=-0.053 Sum_probs=120.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC-CC-ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh---HHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF-DP-DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV---VSY 83 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (330)
+...+..+...+.+.|++++|+..|+.+.+... .| ....+..+..++.+.|++++|+..|+++.+.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 445566677788889999999999999887421 11 1356777888899999999999999998876322 22 234
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 84 GIMINAHCS------------------AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 84 ~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
..+..++.. .|++++|...|+++.+.. |-+..++....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH----
Confidence 444444443 456666666666666553 22332222111100 000000
Q ss_pred CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
......+...|.+.|++++|...|+.+.+...... ...+..+..++.+.|++++|...++.+..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 00113456778899999999999999988642211 25678888999999999999999998876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-10 Score=88.42 Aligned_cols=167 Identities=9% Similarity=0.011 Sum_probs=130.4
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHH-HH
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIF-CT 120 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 120 (330)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+..++.+.|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4456677778888889999999999999988874 3367788888899999999999999998887765 343332 23
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcC
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAG 199 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 199 (330)
....+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667778888888888888774 5577888889999999999999999999988864332 2667888899999999
Q ss_pred CHHHHHHHHHHhh
Q 037620 200 RTEEAYSVFKRMS 212 (330)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (330)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999888887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-10 Score=81.85 Aligned_cols=157 Identities=7% Similarity=0.015 Sum_probs=66.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhhC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA-YCWSM 164 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 164 (330)
+...+...|++++|...|++..+.. |.+...+..+..++...|++++|...++++.... |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3444445555555555555544443 3344455555555555555555555555544432 222221111111 11111
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
....+...+++..+.. +.+...+..+..++...|++++|...|+++.+......+...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223344444444432 113444444445555555555555555554432111112234444444455555555555444
Q ss_pred HH
Q 037620 245 DE 246 (330)
Q Consensus 245 ~~ 246 (330)
++
T Consensus 168 ~~ 169 (176)
T 2r5s_A 168 RR 169 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.6e-10 Score=95.15 Aligned_cols=155 Identities=10% Similarity=-0.001 Sum_probs=119.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
.|++++|++.+++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988743 4467889999999999999999999999999874 34678888999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh---CChhHHHHHHHHHHHc
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS---MRINDAYRMMDEMRKC 179 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (330)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|...+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998876 6678899999999999999999999999998874 44677888899999999 9999999999998886
Q ss_pred CC
Q 037620 180 GI 181 (330)
Q Consensus 180 ~~ 181 (330)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-10 Score=87.48 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCC---C--CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC---CC--ChhhHHHHH
Q 037620 88 NAHCSAKRYDEAVELFREMEATNC---K--PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF---EP--EAPTYNAVV 157 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 157 (330)
..|...|++++|...|.+..+... . .-..+|..+..+|...|++++|...+++..+.-. .+ ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666665543210 0 0123455555555555666666665555443210 00 123344444
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPN-----TRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
..|.. |++++|+..+++........+ ..++..+...|...|++++|...|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44544 555555555555544211000 2334444444555555555555554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-09 Score=94.11 Aligned_cols=164 Identities=9% Similarity=-0.052 Sum_probs=122.1
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 037620 128 EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSV 207 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (330)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 4467889999999999999999999999998864 33678899999999999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc---CChhHHHHHHHHHHh
Q 037620 208 FKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE---DKLDDACKYFQEMLD 284 (330)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 284 (330)
+++..+. .+.+...+..+..++...|++++|.+.+++..+.... +...+..+..++... |++++|...+++.++
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998872 3345778899999999999999999999999887654 677888899999999 999999999999998
Q ss_pred cCCCCChhhHHHH
Q 037620 285 IGIRPPGQLFSNL 297 (330)
Q Consensus 285 ~~~~~~~~~~~~l 297 (330)
.+. .+...+..+
T Consensus 157 ~~p-~~~~~~~~l 168 (568)
T 2vsy_A 157 QGV-GAVEPFAFL 168 (568)
T ss_dssp HTC-CCSCHHHHT
T ss_pred cCC-cccChHHHh
Confidence 652 334444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-09 Score=84.49 Aligned_cols=218 Identities=11% Similarity=0.100 Sum_probs=149.6
Q ss_pred ccCChHHHHHHHHHHhhC------CCCCCh----HHHHHHHHHHhhccChHHHHHHHHHHHhCCC---CC--ChHHHHHH
Q 037620 22 KSRHVERAQEVFDKMKKR------RFDPDI----KSYTILLEGWGQQKNLLSMNEVYREMKDDGF---EP--DVVSYGIM 86 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 86 (330)
..|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+... .+ -..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346777787777765541 112332 2566777788899999999999988875411 11 14578888
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcC--C-CC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-----ChhhHHHH
Q 037620 87 INAHCSAKRYDEAVELFREMEATN--C-KP--SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-----EAPTYNAV 156 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 156 (330)
..+|...|++++|+..|++..+.. . .+ ...++..+..+|.. |++++|+..+++..+..... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 899999999999999999876531 0 12 24677888899988 99999999999886542111 14578888
Q ss_pred HHHHHhhCChhHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch---HHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKC----GIGPN-TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV---STYEIVV 228 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~ 228 (330)
...|...|++++|...+++.... +..+. ...+..+..++...|++++|...|++.. .....++. .....++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 99999999999999999988763 11111 2356667777888899999999999886 32222222 2234445
Q ss_pred HHHHhCCCHHHHHH
Q 037620 229 RMFCYNAQVDMAMR 242 (330)
Q Consensus 229 ~~~~~~~~~~~a~~ 242 (330)
.++ ..|+.+.+..
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 544 4566655555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-07 Score=75.79 Aligned_cols=298 Identities=10% Similarity=0.009 Sum_probs=166.7
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC-hHHHHHHHHHHHhC-CC-CCChHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN-LLSMNEVYREMKDD-GF-EPDVVSY 83 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~ 83 (330)
.--..+|...+..+-. |+++.+..+|++.... .|++..|...+....+.++ .+....+|+..... |. ..+...|
T Consensus 12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3344567777766655 7788888888887773 3577777777766655553 34556667666653 32 2356677
Q ss_pred HHHHHHHh----ccCcHHHHHHHHHHHHhcCCCCChHHH-----------------------------------------
Q 037620 84 GIMINAHC----SAKRYDEAVELFREMEATNCKPSPHIF----------------------------------------- 118 (330)
Q Consensus 84 ~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------------------- 118 (330)
...+..+. ..++.+.+.++|++.+......-...|
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 76666544 235566777777777653111001111
Q ss_pred -------HHHHHHHhcc--C-----cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc
Q 037620 119 -------CTLINGLGSE--K-----RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184 (330)
Q Consensus 119 -------~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (330)
...+..-... + ..+.+..+|+++.... +.+...|...+..+.+.|+++.|..++++.... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 1111110000 0 0233455666665542 345666776777777778888888888877765 222
Q ss_pred HHH----------------------------------------HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 037620 185 TRT----------------------------------------YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224 (330)
Q Consensus 185 ~~~----------------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (330)
... |...+....+.++.+.|..+|++. ..++ .+...|
T Consensus 246 ~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~ 322 (493)
T 2uy1_A 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVF 322 (493)
T ss_dssp SHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHH
Confidence 211 222222233455677777777777 3222 233333
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 225 EIVVRMFCYNA-QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 225 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
...+..-...+ +.+.|..+|+...+.-.. ++..+...++.....|+.+.|..+|+++. .....|...+..-..
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 32222222222 577788888777664322 33445556666667777777887777762 245566666665566
Q ss_pred cCchHHHHHHHHHHHh
Q 037620 304 EGMEETAVVLAQKIDK 319 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~ 319 (330)
.|+.+.+.+++++..+
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7888888777766653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.3e-09 Score=77.13 Aligned_cols=128 Identities=10% Similarity=0.070 Sum_probs=98.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.+..+...+...|++++|+..|+... .|+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566677778888888888887764 4577788888888888888888888888887764 346677888888888
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCh----------------HHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 92 SAKRYDEAVELFREMEATNCKPSP----------------HIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
..|++++|++.|++..+.. +.+. ..+..+..+|...|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887754 3222 677777888888888888888888887763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-07 Score=72.91 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=46.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCC-CCCh----HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-C----hhhHHHH
Q 037620 87 INAHCSAKRYDEAVELFREMEATNC-KPSP----HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-E----APTYNAV 156 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 156 (330)
+..+...|++++|..++++...... .|+. ..+..+...+...+++++|...+.++.+..... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666666666666666655321 1111 122234455555556666666666665532111 1 1135555
Q ss_pred HHHHHhhCChhHHHHHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~ 177 (330)
...|...|++++|...+++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.9e-07 Score=72.37 Aligned_cols=182 Identities=8% Similarity=-0.018 Sum_probs=127.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc-ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK-NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
.+-....+.+..++|+++++.++... |-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-..++...
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33333444556678999998888853 445667777766776777 588999999998887533 777787766666655
Q ss_pred -C-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH--------HHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 94 -K-RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS--------EALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 94 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
+ ++++++++++++.+.. +-+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5 7788888898888876 677788877666666666665 7888888888775 45777777777777766
Q ss_pred CC-------hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 164 MR-------INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 164 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
++ ++++++.+++.+...+ -|...|+-+-..+.+.|..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 65 5677777777776543 3666676666555555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-08 Score=76.15 Aligned_cols=128 Identities=9% Similarity=-0.076 Sum_probs=105.7
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35556677888999999999998774 5678889999999999999999999999988876 667888999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEA----------------PTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
..|++++|.+.+++..+.. +.+. ..+..+..++...|++++|...++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988763 2222 567778888888889999988888887754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-07 Score=73.79 Aligned_cols=162 Identities=13% Similarity=0.116 Sum_probs=97.3
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCC-CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc----hHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGI-GPNT----RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT----VSTYEIV 227 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 227 (330)
+..+...|++++|...+++...... .|+. ..+..+...+...+++++|...+++........++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 1111 12223445555566777777777776652112222 2256777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh----C-CCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCCC-hhhHHH
Q 037620 228 VRMFCYNAQVDMAMRIWDEMKA----R-GVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDI----GIRPP-GQLFSN 296 (330)
Q Consensus 228 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 296 (330)
...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|+..+++.++. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 1111 2236677777778888888888877776642 11111 556777
Q ss_pred HHHHHHhcCc-hHHHHHHHHHHH
Q 037620 297 LKQALRDEGM-EETAVVLAQKID 318 (330)
Q Consensus 297 l~~~~~~~g~-~~~a~~~~~~~~ 318 (330)
+..++.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777777774 577777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-08 Score=75.76 Aligned_cols=167 Identities=7% Similarity=-0.005 Sum_probs=106.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC---Cc--HH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA-----PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG---PN--TR 186 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 186 (330)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777766654211110 12333445556667788888877777643211 11 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CC-ccH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMS---RKPGTEP--TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG----VL-PVM 256 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~ 256 (330)
+++.+...|...|++++|...+++.. +..+..+ ...++..+...|...|++++|...+++..+.. .. .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67777788888888888888888766 2111111 12477788888888888888888888776431 11 115
Q ss_pred HHHHHHHHHHhccCChhHH-HHHHHHHH
Q 037620 257 HMYSTLINSLCHEDKLDDA-CKYFQEML 283 (330)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 283 (330)
.+|..+..+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6777888888888888888 67677665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-07 Score=72.61 Aligned_cols=224 Identities=12% Similarity=0.078 Sum_probs=154.6
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-C-cH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK-RYDEAVELFREMEATNCKPSPHIFCTLINGLGSE-K-RL 131 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 131 (330)
....+..++|++++++++..+. -+..+|+.--.++...+ .+++++++++.+...+ +-+..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3444556789999999998853 36777887777777777 5999999999999887 77888888877777666 6 88
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC---
Q 037620 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN--------DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR--- 200 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 200 (330)
++++++++++.+.. +.+...|+.-...+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 99999999998875 456777776666666666666 888888888887544 77778877777777665
Q ss_pred ----HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHhCC-----
Q 037620 201 ----TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV--------------------DMAMRIWDEMKARG----- 251 (330)
Q Consensus 201 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~----- 251 (330)
++++++.+++... ..+-|...|+.+-..+.+.|.. ........++...+
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 5777777777765 2344566666655555555543 22222222222221
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
-.+++..+..++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 124566677777777777777777777777754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-09 Score=83.05 Aligned_cols=99 Identities=9% Similarity=-0.070 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455555556666666666666666666542 2255556666666666666666666666666554 445566666666
Q ss_pred HHhccCcHHHHHHHHHHHHhc
Q 037620 124 GLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (330)
++...|++++|...+.+..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-08 Score=69.32 Aligned_cols=95 Identities=7% Similarity=0.000 Sum_probs=44.7
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
+......+.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444444455555555554444432 2234444444444445555555555554444443 3344444444444445
Q ss_pred cCcHHHHHHHHHHHHhc
Q 037620 128 EKRLSEALQFFGQSKKR 144 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (330)
.|++++|.+.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-09 Score=74.37 Aligned_cols=98 Identities=9% Similarity=-0.077 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..|++..+.. |.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3445555556666666666666666666553 2255566666666666666666666666666554 4455566666666
Q ss_pred HhccCcHHHHHHHHHHHHhc
Q 037620 125 LGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (330)
|...|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=69.14 Aligned_cols=116 Identities=8% Similarity=0.006 Sum_probs=98.6
Q ss_pred CCCC-hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 6 LKQE-LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 6 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
+.|+ ...+......+.+.|++++|++.|+...+.. |.+...|..+..++.+.|++++|+..|++.++.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3444 3568888899999999999999999998853 5578899999999999999999999999999875 44788999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
.+..++...|++++|++.|++..+.. |.+...+..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 99999999999999999999999886 6667766665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-07 Score=74.81 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CCc--h
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT-----RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT--EPT--V 221 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~ 221 (330)
..+...+..+...|++++|...+....+....... ..+..+...+...|++++|...+++....... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677888999999999999988775322111 22344556677889999999999988752211 111 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh---C-CCCc--cHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----CCC-C
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKA---R-GVLP--VMHMYSTLINSLCHEDKLDDACKYFQEMLDIG----IRP-P 290 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 290 (330)
.+++.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|+..+++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788999999999999999999998873 2 1111 22578889999999999999999999987532 111 1
Q ss_pred hhhHHHHHHHHHhcCchHHH-HHHHHHHH
Q 037620 291 GQLFSNLKQALRDEGMEETA-VVLAQKID 318 (330)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 318 (330)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788899999999999999 77677654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=71.36 Aligned_cols=126 Identities=10% Similarity=-0.011 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555555442 2244455555555555555555555555555543 344455555555555
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHH--HHHHHHhhCChhHHHHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNA--VVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~ 175 (330)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|...+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5555555555555555442 122222222 22224444555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-08 Score=71.61 Aligned_cols=131 Identities=7% Similarity=0.017 Sum_probs=109.5
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4557788888999999999999999988843 4578889999999999999999999999999874 4467889999999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHHHh
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTL--INGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
+...|++++|...|++..+.. +.+...+..+ +..+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998876 5566666443 4447788999999999887643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-08 Score=68.41 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444444555555555555444432 1234444444444445555555555555444433 3334444444444
Q ss_pred HhccCcHHHHHHHHHHHHhc
Q 037620 125 LGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (330)
+...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 44555555555555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-08 Score=68.55 Aligned_cols=121 Identities=10% Similarity=0.010 Sum_probs=102.6
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
.+.+...|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 45567789999999999999999999999998853 4578889999999999999999999999999874 447788899
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
+..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999999999999999998875 455667777777666544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-08 Score=66.83 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
|..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|..+++++.... +.+..++..+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333344444444444444444443331 1233333334444444444444444444443332 2333334444444444
Q ss_pred cCcHHHHHHHHHHHHh
Q 037620 128 EKRLSEALQFFGQSKK 143 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~ 143 (330)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-08 Score=67.50 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...|..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999998753 4577889999999999999999999999998874 4477888899999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
+...|++++|...++++.+.. +.+...+..+..++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999998876 5566666666655543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=71.64 Aligned_cols=99 Identities=13% Similarity=-0.009 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
...+..+...+...|++++|...|++... ..+.+...|..+..++...|++++|...|++..+..+. ++..|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44666677777788888888888888776 23345667777778888888888888888887776554 5667777778
Q ss_pred HHhccCChhHHHHHHHHHHhcC
Q 037620 265 SLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+|...|++++|...|++.++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=68.59 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..... +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 1233444444444444444444444444444432 333444444444444
Q ss_pred ccCcHHHHHHHHHHHHhc
Q 037620 127 SEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (330)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 444444444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-09 Score=82.26 Aligned_cols=195 Identities=7% Similarity=-0.036 Sum_probs=127.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|+..|++..... +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55677788889999999999999999998876 6688889999999999999999999999998874 456778888999
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
++...|++++|...++...+.... +...+...+....+. ..+..... ... ...+.+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWNS-IEE-RRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHHH-HHH-TCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHHH-HHH-HHHhhhHHHHHHHHH-H-HHHHHH
Confidence 999999999999999887764211 100111111111111 11111111 111 123334333333322 2 368888
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CChhHHHHHHHHHHh
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DKLDDACKYFQEMLD 284 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 284 (330)
+|.+.++...+.... +......+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888877765332 333333443334443 667888888887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.1e-09 Score=75.12 Aligned_cols=121 Identities=9% Similarity=0.091 Sum_probs=76.7
Q ss_pred HccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH-HhccCcH--H
Q 037620 21 CKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA-HCSAKRY--D 97 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~ 97 (330)
...|++++|...++...+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566677777776666532 3456667777777777777777777777776653 2355566666666 5566776 7
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+|...+++..+.. +.+...+..+..+|...|++++|...+.++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776664 455666666777777777777777777776665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=69.19 Aligned_cols=122 Identities=12% Similarity=0.018 Sum_probs=104.2
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.+...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 3456778889999999999999999999988743 4578889999999999999999999999999874 4467888899
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
..++...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998876 56777888888888776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-08 Score=73.68 Aligned_cols=188 Identities=9% Similarity=-0.082 Sum_probs=113.5
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHH-------HHHHhccCcHHHHHHHHHHHHhcCCCCC---------------
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTL-------INGLGSEKRLSEALQFFGQSKKRGFEPE--------------- 149 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 149 (330)
..++...|.+.|.++.... |.....|..+ ...+.+.++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 4567777777777777665 5556666665 34444444444444444433331 111
Q ss_pred -------hhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc--
Q 037620 150 -------APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-- 220 (330)
Q Consensus 150 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 220 (330)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 1223345566777788888888777766543 33335555555777788888888888755431 1 111
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP--VMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2356667777788888888888888776443213 23355566667777888888888888887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-08 Score=74.62 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
+..+...+...|++++|...+++.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=71.69 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|+..|++....+ |.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455556666667777777777777766653 3356666666666777777777777777766655 455666666666
Q ss_pred HHhccCcHHHHHHHHHHHHhc
Q 037620 124 GLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-08 Score=72.00 Aligned_cols=118 Identities=10% Similarity=0.117 Sum_probs=51.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhhCCh--hHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA-YCWSMRI--NDA 169 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 169 (330)
.|++++|...+++..... +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444444433 3344444444444444444444444444444432 2233334444444 3444444 555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
...++....... .+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554444321 1334444444455555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-08 Score=73.34 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=71.4
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhhCCh
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR----GF-EPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 166 (330)
..|++++|.++++.+.. .......++..+...+...|++++|...+.+.... +. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 11233445555555555555555555555554431 10 11223445555555666666
Q ss_pred hHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCC-CchHHHHHHHHHHHhCCC
Q 037620 167 NDAYRMMDEMRKC----GIGP--NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGTE-PTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 167 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~ 236 (330)
++|...+++.... +..+ ....+..+...+...|++++|...+++.... .+.. ....++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666665554432 1011 1234555555666666666666666655421 0000 011223444555555555
Q ss_pred HHHHHHHHHHHH
Q 037620 237 VDMAMRIWDEMK 248 (330)
Q Consensus 237 ~~~a~~~~~~~~ 248 (330)
+++|...+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-08 Score=78.26 Aligned_cols=122 Identities=7% Similarity=-0.132 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--------------hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--------------VVSYGIMINAHCSAKRYDEAVELFREMEATNC 111 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 111 (330)
..|..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++.++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444445555555555555555555554421110 2444444444555555555555555544443
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
+.+..++..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.+++
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555554444442 22333444444444444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-07 Score=71.24 Aligned_cols=190 Identities=9% Similarity=-0.031 Sum_probs=140.1
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHH-------HHHHHhhCChhHHHHHHHHHHHcCCCCc---------------
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAV-------VGAYCWSMRINDAYRMMDEMRKCGIGPN--------------- 184 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 184 (330)
..++...|.+.|.++.+.. +.....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5899999999999999885 4456777777 4556666666666555554433 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc--
Q 037620 185 -------TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV-- 255 (330)
Q Consensus 185 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 255 (330)
..........+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 22344566778899999999999998875 23444366666778899999999999998654432 121
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP--GQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 23677788899999999999999999985433253 345667788899999999999999999887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-08 Score=70.68 Aligned_cols=98 Identities=8% Similarity=0.011 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|+..|++....+ |.+...|..+..+|...|++++|...++++.... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33445555556666666666666666665554 4455566666666666666666666666665553 234455555566
Q ss_pred HHHhhCChhHHHHHHHHHHH
Q 037620 159 AYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~ 178 (330)
++...|++++|...|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.7e-08 Score=78.05 Aligned_cols=131 Identities=9% Similarity=-0.028 Sum_probs=112.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---------------hHHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---------------IKSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
+...+..+...+.+.|++++|+..|+...+.. +.+ ..+|..+..++.+.|++++|+..+++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35578888899999999999999999998853 223 48899999999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHH-HHHHHHH
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL-QFFGQSK 142 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 142 (330)
.. +.+...|..+..++...|++++|...|++..+.. |.+..++..+..++.+.|+.++|. ..+..|.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 4478899999999999999999999999999886 677889999999999999999884 4555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.6e-09 Score=76.81 Aligned_cols=148 Identities=9% Similarity=-0.091 Sum_probs=77.0
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh----------------HH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV----------------VS 82 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~ 82 (330)
.....|+++++.+.++.-... .......+..+...+...|++++|+..|++..+.... +. .+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHH
Confidence 334445555555555432221 0113345566666777777777777777777765211 21 45
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW 162 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (330)
+..+..++...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 5556666666666666666666666554 4455566666666666666666666666665552 2344445555555544
Q ss_pred hCChhHHH
Q 037620 163 SMRINDAY 170 (330)
Q Consensus 163 ~~~~~~a~ 170 (330)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=64.08 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.+ +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333344444444444444444444432 1233444444444444444444444444444433 3334444444444444
Q ss_pred cCcHHHHHHHHHHHH
Q 037620 128 EKRLSEALQFFGQSK 142 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~ 142 (330)
.|++++|...+++..
T Consensus 85 ~~~~~~A~~~~~~al 99 (126)
T 3upv_A 85 VKEYASALETLDAAR 99 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHH
Confidence 444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=62.75 Aligned_cols=102 Identities=9% Similarity=0.100 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP--PGQLFSNLK 298 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 298 (330)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445566677777778888888888777766433 55667777777778888888888888777653 23 466777777
Q ss_pred HHHHhc-CchHHHHHHHHHHHhcCCCC
Q 037620 299 QALRDE-GMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 299 ~~~~~~-g~~~~a~~~~~~~~~~~~~~ 324 (330)
..+.+. |++++|.+.+++..+....+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777888 88888888888877766644
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-07 Score=61.49 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
..+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555555555555555554421 2244445555555555555555555555555442 22344444555555
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 91 CSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~ 109 (330)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-07 Score=61.33 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455556666666666666666666666553 2255556666666666666666666666666554 4455566666666
Q ss_pred HhccCcHHHHHHHHHHHHhc
Q 037620 125 LGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (330)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-08 Score=67.11 Aligned_cols=97 Identities=10% Similarity=-0.050 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
..+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++....+ |.++..+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 444555556666666666766666666553 2355566666666666666777776666666654 55556666666666
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 126 GSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (330)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-07 Score=62.85 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4456667777788888888888888887765 6677788888888888888888888888887764 3456677777778
Q ss_pred HHhhCChhHHHHHHHHHHHc
Q 037620 160 YCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~ 179 (330)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=62.26 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC--ChHHHHHHHHH
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKP--SPHIFCTLING 124 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 124 (330)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444444444444444444444432 1233444444444444455555555554444433 22 34444444444
Q ss_pred Hhcc-CcHHHHHHHHHHHHhc
Q 037620 125 LGSE-KRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~-~~~~~a~~~~~~~~~~ 144 (330)
+... |++++|.+.+......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 4455 5555555555444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.9e-08 Score=67.06 Aligned_cols=100 Identities=13% Similarity=-0.057 Sum_probs=87.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..+...+.+.|++++|...|+...... |.+...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34557777888999999999999999998853 5578889999999999999999999999999885 447788888999
Q ss_pred HHhccCcHHHHHHHHHHHHhcC
Q 037620 89 AHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
++...|++++|.+.|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-05 Score=61.70 Aligned_cols=185 Identities=8% Similarity=-0.010 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC--cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC-hhHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEK--RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR-INDAYRM 172 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 172 (330)
+++++.+++.+...+ |-+..+|+.-..++...+ .+++++.+++.+.+.. +.|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555554443 344444444444444444 2455555555555443 2344444444444444444 2455555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC----
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKA--------------GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN---- 234 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 234 (330)
++.+....+. |...|+.....+... +.++++++.+..... ..+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcc
Confidence 5555544322 344444433333332 234555555555543 1223344444333333332
Q ss_pred -------CCHHHHHHHHHHHHhCCCCccHHHHHHH---HHHHhccCChhHHHHHHHHHHhcC
Q 037620 235 -------AQVDMAMRIWDEMKARGVLPVMHMYSTL---INSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 235 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+.++++++.++++.+..+. +.-.+..+ .......+..+++...+.++.+.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3466777777777765432 22112111 112223566677777777777543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-05 Score=61.85 Aligned_cols=217 Identities=9% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc----------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC-
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKR----------LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR- 165 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 165 (330)
++|+.+++.+...+ |-+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-...+.+.++
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 35666666666655 4444555543333333222 678889999988874 4577788877777777774
Q ss_pred -hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---------
Q 037620 166 -INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR-TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN--------- 234 (330)
Q Consensus 166 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 234 (330)
+++++.+++.+.+.... +...|+--..++...|. ++++++.++.+.+ ..+-|...|+.....+...
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 88999999999987644 77888877777888888 5899999999887 2344666776665555544
Q ss_pred -----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHhcCCCCChhhHHH--
Q 037620 235 -----AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-----------DKLDDACKYFQEMLDIGIRPPGQLFSN-- 296 (330)
Q Consensus 235 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 296 (330)
+.++++++.+.......+. |...|+.+-..+.+. +.++++++.++++.+.. |+. .|..
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~ 277 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN-KWCLLT 277 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHH
Confidence 4578999999999887666 777887655555444 45788999999998754 443 2332
Q ss_pred HH---HHHHhcCchHHHHHHHHHHHhcCC
Q 037620 297 LK---QALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 297 l~---~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
++ ......|..+++..++.++.+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 22 122346778888899998887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=64.46 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=38.6
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCC----hHHHHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNC--KPS----PHIFCTL 121 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 121 (330)
|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++...... +++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333344444444444444444444332 22333344444444444444444444444433220 011 3334444
Q ss_pred HHHHhccCcHHHHHHHHHHHHh
Q 037620 122 INGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
..++...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-07 Score=63.07 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+..+...+.+.|++++|+..|++.++.. |.+..+|..+..+|.+.|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444455555555555444443 3344444444445555555555555444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-07 Score=62.49 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD----VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444555555555555555555555555544 223 3445555555555555555555555555443 33445555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.4e-07 Score=61.99 Aligned_cols=115 Identities=10% Similarity=-0.061 Sum_probs=96.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD----IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS 82 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (330)
+.+...+..+...+...|++++|.+.|+...+.. |+ ...|..+...+...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3466778899999999999999999999998853 55 6788889999999999999999999998874 336788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
+..+..++...|++++|...|++..+.. +.+...+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8889999999999999999999998875 55566665555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-07 Score=68.07 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=102.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh----------------HHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI----------------KSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
...+..+...+...|++++|+..|+...+.. +.+. ..|..+..++...|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3457778888999999999999999998742 2222 7888899999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHH-HHHHHHHh
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL-QFFGQSKK 143 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 143 (330)
.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++. ..+..+..
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 74 4478889999999999999999999999998876 667788888888888777776666 44444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-07 Score=64.08 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--cc----HHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PV----MHMY 259 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 259 (330)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|+..+++.++.... ++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566777777777777777777777652 2334566777777777777777777777776654211 11 1345
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFS 295 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (330)
..+..++...|++++|+..|++.++. .|++.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 56666777777777777777777653 45655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.4e-07 Score=62.33 Aligned_cols=97 Identities=9% Similarity=-0.064 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...|..+...+...|++++|+..|....... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 33444444444444555555555554444432 2234444444444445555555555555444443 334444444444
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~ 142 (330)
++...|++++|...+.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4555555555554444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=64.95 Aligned_cols=97 Identities=7% Similarity=-0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
..|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555555442 2244455555555555555555555555555443 34455555555555
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 126 GSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (330)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.1e-07 Score=62.00 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=81.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTL 262 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (330)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++..+.... +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 45678888888889999999999999988762 3345677888888889999999999999988877544 67788888
Q ss_pred HHHHhccCChhHHHHHHHHHHhc
Q 037620 263 INSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999888754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.4e-07 Score=63.80 Aligned_cols=100 Identities=10% Similarity=0.029 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667778888888889999999988888776 6678888888888888888888888888888774 445777888888
Q ss_pred HHHhhCChhHHHHHHHHHHHcC
Q 037620 159 AYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-05 Score=65.78 Aligned_cols=124 Identities=9% Similarity=0.050 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM 230 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (330)
.|...+....+.+..+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+...+..+. +...+...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 3555555555677899999999998 32 22344455433322222 34699999999998874332 33455667777
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999973 2567788888777778999999999988874
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-06 Score=71.13 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=99.6
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCC-Ch---------------HHHHHHHHHHhhccChHHHHHHHHHHHhCC-CCCC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDP-DI---------------KSYTILLEGWGQQKNLLSMNEVYREMKDDG-FEPD 79 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 79 (330)
...+.+.|++++|++.|..+.+..... +. .++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345667778888888877777642111 10 125556666667777777776666655431 0111
Q ss_pred h----HHHHHHHHHHhccCcHHHHHHHHHHHHhc----C-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC---
Q 037620 80 V----VSYGIMINAHCSAKRYDEAVELFREMEAT----N-CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE--- 147 (330)
Q Consensus 80 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 147 (330)
. .+.+.+...+...|+.+.+..+++..... + ...-..++..+...|...|++++|..++.++...-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222333344456666666666655431 1 1122345555666666666666666666655432111
Q ss_pred --CChhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCC-C-c--HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 148 --PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIG-P-N--TRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 148 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
....++..++..|...|++++|...+++.... .+. | . ...+..+...+...+++++|...+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11234555566666666666666666555431 111 1 1 1233334444445566666665555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-07 Score=61.92 Aligned_cols=97 Identities=8% Similarity=-0.101 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
+..+...+...|++++|...+++..+.... +...|..+..++...|++++|+..+++.++.. +.+...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445566677777777777777777766544 56677777777777778888887777777654 2356667777777777
Q ss_pred cCchHHHHHHHHHHHhcCC
Q 037620 304 EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~ 322 (330)
.|++++|...+++..+..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 7778888777777765543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-06 Score=70.34 Aligned_cols=198 Identities=8% Similarity=-0.037 Sum_probs=129.3
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCC
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPD----------------VVSYGIMINAHCSAKRYDEAVELFREMEATN-CKPS 114 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 114 (330)
...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556788999999999999887642211 1246678888888899999988888776431 1122
Q ss_pred h----HHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCC-
Q 037620 115 P----HIFCTLINGLGSEKRLSEALQFFGQSKKR----GFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIG- 182 (330)
Q Consensus 115 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~- 182 (330)
. .+.+.+...+...|+++.|..++...... +..+ -..++..+...|...|++++|..+++.+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 23334445556678888888888776432 2222 2346677788888888888888888877552 111
Q ss_pred -C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---CCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 183 -P-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP---GTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 183 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
+ ...++..++..|...|++++|..++++..... ..++. ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 13467777788888888888888887765311 11111 23455566667777888888888777665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-07 Score=62.23 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCC----hhhHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF--EPE----APTYN 154 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 154 (330)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+.++.+... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666677777777777777777776664 55666677777777777777777777777655421 111 44556
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.+..++...|++++|...++.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666667777777766666664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.1e-07 Score=61.11 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=36.5
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
.+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. |.+...+..+..++...|++++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444332 1133344444444444444444444444444433 3333444444444444444444
Q ss_pred HHHHHHHHH
Q 037620 134 ALQFFGQSK 142 (330)
Q Consensus 134 a~~~~~~~~ 142 (330)
|...+++..
T Consensus 104 A~~~~~~al 112 (121)
T 1hxi_A 104 ALASLRAWL 112 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-06 Score=72.76 Aligned_cols=87 Identities=10% Similarity=-0.026 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
.+|..+..+|.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 444444455555555555555555544442 22344444455555555555555555555444321 1233444444444
Q ss_pred HHcCCHHHH
Q 037620 196 IKAGRTEEA 204 (330)
Q Consensus 196 ~~~~~~~~a 204 (330)
...++.+++
T Consensus 396 ~~~~~~~~a 404 (457)
T 1kt0_A 396 KKAKEHNER 404 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=72.83 Aligned_cols=120 Identities=10% Similarity=-0.010 Sum_probs=71.4
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344556677777777777766653 2246666666677777777777777777766654 45566666666677777777
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhhCChhHHHHHHH
Q 037620 132 SEALQFFGQSKKRGFEPEAPTYNAVVGA--YCWSMRINDAYRMMD 174 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 174 (330)
++|.+.++++.+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777776666553 2233344444444 555666666666655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.8e-07 Score=76.29 Aligned_cols=127 Identities=6% Similarity=0.003 Sum_probs=100.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
+..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444556778899999999999998853 4468899999999999999999999999999885 3477888999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH--HhccCcHHHHHHHHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLING--LGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 142 (330)
.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.+++..
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999998875 5555666666666 888899999999887643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-06 Score=57.68 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=23.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
..+..++...|++++|...|+++.... +.+ ..++..+..++...|++++|...++++.+
T Consensus 43 ~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 43 YWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444443332 112 23333344444444444444444444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-06 Score=56.88 Aligned_cols=103 Identities=10% Similarity=0.039 Sum_probs=83.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh---HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC---hHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI---KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD---VVSYGI 85 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 85 (330)
.+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|++..+.... + ...+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 34556778889999999999999998843 2333 57888889999999999999999999887422 3 567888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHI 117 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (330)
+..++...|++++|...|+++.... |.+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 112 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY-PGSDAA 112 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCChHH
Confidence 8999999999999999999998875 334333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=73.18 Aligned_cols=152 Identities=9% Similarity=-0.034 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--------------hHHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--------------VVSYGIMIN 88 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~ 88 (330)
.+++++|...|+...+.. +-....|..+...+.+.|++++|+..|++.++...... ..+|..+..
T Consensus 247 l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344555554444333211 12456677777778888888888888888776522211 477888888
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988876 6678888888889999999999999999888774 4456778888888888888877
Q ss_pred HHH-HHHHHH
Q 037620 169 AYR-MMDEMR 177 (330)
Q Consensus 169 a~~-~~~~~~ 177 (330)
+.. .+..|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 654 444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=62.11 Aligned_cols=24 Identities=25% Similarity=0.294 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
+..+...+...|++++|...+++.
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-06 Score=69.77 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=48.6
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCC---------------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDG---------------FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCK 112 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (330)
+..+...+.+.|++++|+..|++.++.- .+.+..+|..+..++.+.|++++|+..+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4555556666666666666666665410 01123344444455555555555555555555443 3
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.+..++..+..+|...|++++|.+.++++.+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555554444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-07 Score=60.88 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
.+..+..++...|++++|+..|++..+.. |.+..++..+..++...|++++|...+.+..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444433 3333444444444444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-06 Score=60.31 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhC--------C---------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDD--------G---------FEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (330)
.+......+.+.|++++|+..|.+.+.. . .+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444555555555555555555432 0 0113345666666666777777777777776666
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 110 NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+ |.+...|..+..+|...|++++|...|.+..+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5 556666666667777777777777777666665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-06 Score=69.83 Aligned_cols=124 Identities=12% Similarity=0.049 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhC---------------CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCC
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKR---------------RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG 75 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (330)
..+..+...+.+.|++++|+..|+...+. ..+.+...|..+..++.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34778888899999999999999998761 112345788889999999999999999999999875
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQ 136 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (330)
+.+...|..+..++...|++++|++.|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999999876 5677788888888877777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=61.45 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=39.8
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCC-CC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--C---CCChHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFE-PD----VVSYGIMINAHCSAKRYDEAVELFREMEATN--C---KPSPHI 117 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~ 117 (330)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. . +....+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555555444332100 00 1234444455555555555555555443321 0 001223
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 037620 118 FCTLINGLGSEKRLSEALQFFGQS 141 (330)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~ 141 (330)
+..+..++...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444445555555555554444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.7e-06 Score=59.64 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------C---------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEAT--------N---------CKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
...+......+.+.|++++|+..|.+.... . -+.+..+|..+..+|.+.|++++|+..+.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677788889999999999999988765 1 02234566677777777777777777777777
Q ss_pred hcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 143 KRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
+.. +.+...|..+..+|...|++++|...|+.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 664 445666777777777777777777777777664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.1e-07 Score=60.70 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=72.4
Q ss_pred ccCChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 22 KSRHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
..|++++|+..|+...+.+ -+.+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998853 23456788899999999999999999999999885 33688888999999999999999
Q ss_pred HHHHHHHHhcC
Q 037620 100 VELFREMEATN 110 (330)
Q Consensus 100 ~~~~~~~~~~~ 110 (330)
+..+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=70.14 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ..+|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3445555666666666666666666554 222221 111122222211110 124555555666
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH-LIKAGRTEEAY 205 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 205 (330)
+.|++++|...+.+..+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655543 23445555566666666666666666665544321 122233333322 12234455555
Q ss_pred HHHHHhhc
Q 037620 206 SVFKRMSR 213 (330)
Q Consensus 206 ~~~~~~~~ 213 (330)
..|..+..
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 55555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=70.83 Aligned_cols=152 Identities=7% Similarity=-0.035 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM 230 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (330)
..+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 445566666677777777777777776642 33221 112222333322211 1367788889
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCchHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA-LRDEGMEET 309 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 309 (330)
+.+.|++++|...+++.++.... +...|..+..+|...|++++|...|++.++.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887544 67888889999999999999999999987543 2234445545444 234566778
Q ss_pred HHHHHHHHHhcCCCC
Q 037620 310 AVVLAQKIDKLRKTP 324 (330)
Q Consensus 310 a~~~~~~~~~~~~~~ 324 (330)
+.++++++....+..
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888888887665533
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-05 Score=64.17 Aligned_cols=172 Identities=8% Similarity=-0.014 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc----------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC--
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKR----------LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM-- 164 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 164 (330)
++|++.++++...+ |-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45555666655554 4444555544444444444 566666666665553 334555555555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---------
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG-RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN--------- 234 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 234 (330)
++++++..++++.+.... +..+|+.-..++...| .++++++.++++.+ ..+-+...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccccc
Confidence 446666666666665433 5555655555555566 56666666666654 2233445555544444332
Q ss_pred -----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 235 -----AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 235 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
+.++++.+.+++.....+. +...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4577888888888876655 67778877777777666443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-05 Score=65.35 Aligned_cols=175 Identities=7% Similarity=-0.079 Sum_probs=137.1
Q ss_pred CChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC----------hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 24 RHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN----------LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
...++|++.++.+.... |-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|..-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999998853 4456778776666666666 89999999999988643 888888888888888
Q ss_pred C--cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh-------
Q 037620 94 K--RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK-RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS------- 163 (330)
Q Consensus 94 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 163 (330)
+ +++++++.++++.+.+ +-+..+|+.-..++.+.| .++++++.+.++.+.. +.+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 7799999999999987 778899998888888888 8999999999998875 45777888777776663
Q ss_pred -------CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 164 -------MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 164 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
+.++++.+.++....... -+...|.-+-..+...+..++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 556888888888887643 367777777777766666443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-05 Score=53.13 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAV 100 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 100 (330)
++++|.+.|+...+.+ +.... +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555543 11112 4444444445555555555555443 33444444444444 44555555
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcC
Q 037620 101 ELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 145 (330)
++|++..+.+ ++..+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554443 23344444444444 445555555555544443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=56.01 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=52.4
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCC------C-----hHHHHHHHHHHhccCcHHHHHHHHHHHHhc-------C
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEP------D-----VVSYGIMINAHCSAKRYDEAVELFREMEAT-------N 110 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~ 110 (330)
......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 333444555556666666665555442110 1 225666666666666666666666666654 4
Q ss_pred CCCChHHH----HHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 111 CKPSPHIF----CTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 111 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
|.+...| .....++...|++++|+..|++..+
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344555 5566666666666666666666544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-05 Score=54.51 Aligned_cols=111 Identities=13% Similarity=0.014 Sum_probs=65.9
Q ss_pred cChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHH
Q 037620 59 KNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEA 134 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 134 (330)
+++++|.++|++..+.| .|+.. +...|...+.+++|+++|++..+.+ ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45566666666666665 22222 5555555556666666666666554 44555556666655 5666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcC
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 180 (330)
.++|++..+.| ++..+..|...|.. .+++++|...+++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666654 44555556666655 566666666666665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-05 Score=54.91 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-C-----Ch-----HHHHHHHHHHhccCcHHHHHHHHHHHHhc------
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCK-P-----SP-----HIFCTLINGLGSEKRLSEALQFFGQSKKR------ 144 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 144 (330)
.+......+...|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3455566677788888888888887765411 0 11 25555555555666666665555555543
Q ss_pred -CCCCChhhH----HHHHHHHHhhCChhHHHHHHHHHH
Q 037620 145 -GFEPEAPTY----NAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 145 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
. +.+...| .....++...|++++|+..|++..
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1122333 444444444444555444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.6e-06 Score=69.11 Aligned_cols=124 Identities=10% Similarity=-0.046 Sum_probs=65.6
Q ss_pred HhhccChHHHHHHHHHHHhC-----CC-CC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-------CCCCChHHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDD-----GF-EP-DVVSYGIMINAHCSAKRYDEAVELFREMEAT-------NCKPSPHIFCT 120 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ 120 (330)
+...|++++|+.++++.++. |. .| ...+++.|..+|...|++++|..++++.++. +.+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566777777666665543 10 11 2345666666676777777666666665431 11223445566
Q ss_pred HHHHHhccCcHHHHHHHHHHHHh-----cC--CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 121 LINGLGSEKRLSEALQFFGQSKK-----RG--FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
|...|...|++++|..++++... .| .+....+.+.+..++...+.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665543 12 111122334444455555555666655555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=57.69 Aligned_cols=92 Identities=15% Similarity=0.050 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-------hh
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-------GQ 292 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 292 (330)
+...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|+..+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 4456667777777888888888888877766443 56677777778888888888888888877543 33 34
Q ss_pred hHHHHHHHHHhcCchHHHHHHH
Q 037620 293 LFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 293 ~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
.+..+..++...|+.+.|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4555555566656555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.8e-06 Score=69.43 Aligned_cols=126 Identities=6% Similarity=-0.043 Sum_probs=96.5
Q ss_pred HHHccCChHHHHHHHHHHhhC---CCCC----ChHHHHHHHHHHhhccChHHHHHHHHHHHhC-----CC--CCChHHHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKR---RFDP----DIKSYTILLEGWGQQKNLLSMNEVYREMKDD-----GF--EPDVVSYG 84 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 84 (330)
.+...|++++|+.++++.++. -+.| ...+++.|...|...|++++|+.++++.++. |. +-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887652 1112 3467899999999999999999999987653 21 12356788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhc-----C--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 85 IMINAHCSAKRYDEAVELFREMEAT-----N--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.|...|...|++++|..++++..+. | .|....+...+..++...+.+++|+..+.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887642 3 2233455667778888899999999999888653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=52.35 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+..+...+...|++++|++.|++..+.. +.+..++..+..++...|++++|.+.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444445555555555555555554443 334444555555555555555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.12 E-value=4.8e-05 Score=47.57 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333334444444444444433332 2233333333344444444444444444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.5e-05 Score=48.23 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455555666666666666666666666553 2245556666666666677777777666666554 4445555555444
Q ss_pred Hh
Q 037620 125 LG 126 (330)
Q Consensus 125 ~~ 126 (330)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=51.92 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 64 MNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554442 2244455555555555555555555555555443 33444555555555555555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-05 Score=51.19 Aligned_cols=77 Identities=9% Similarity=-0.004 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
|+..|+...+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444321 2234444444444444555555555554444432 1233444444444444555555555444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=2e-05 Score=54.65 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc----------HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR----------YDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++.+ |.+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444444554444443 2244444444444444433 346666666666655 445556666666665543
Q ss_pred -----------cHHHHHHHHHHHHhcCCCCChhhH
Q 037620 130 -----------RLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 130 -----------~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
++++|.+.|++..+. .|+...|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 566666666666655 3444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=54.76 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=75.4
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH----------HHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL----------SEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
.+.+.+++|.+.++...+.+ |.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34567889999999998887 77889999888888888765 58888888888875 44667888888888
Q ss_pred HhhC-----------ChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 161 CWSM-----------RINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 161 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
...| ++++|...|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 788888888888774 455555544443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=6e-05 Score=48.38 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+...+..+..++...|++++|...|++..+.... +...|..+..+|...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666667777777777777777776665443 455666677777777777777777776654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=47.24 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
...+..+..++...|++++|+..|++..+.+ +.+..+|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444455555555554444443 3334444444444444555555444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0016 Score=51.89 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=56.6
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 037620 217 TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFS 295 (330)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (330)
.+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 35566777777766777788888888888888875 56667777777888888888888888888765 46666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00014 Score=46.34 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHH-HHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMH-MYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
....+...|++++|...+++..+.... +.. .+..+..++...|++++|...|++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556667777777777777665433 445 66666777777777777777777776653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0021 Score=51.27 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+..++..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4445555544444455555555555555541 244444445555555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00065 Score=56.18 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=65.4
Q ss_pred HcCCHHHHHHHHHHhhcC--CCC---CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CC-Cc-cHHHHHHHH
Q 037620 197 KAGRTEEAYSVFKRMSRK--PGT---EPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-----GV-LP-VMHMYSTLI 263 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~--~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 263 (330)
..|++++|..++++..+. .-. .|+ ..+++.|..+|...|++++|+.++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357789999888876541 111 222 357888999999999999999999887642 32 22 245788899
Q ss_pred HHHhccCChhHHHHHHHHHHh
Q 037620 264 NSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..|...|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00044 Score=57.20 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C--CCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKR-----G--FEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
.+++.|..+|...|++++|..++++.... | .+....+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444455555555555555544443321 1 1112233455555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0017 Score=53.74 Aligned_cols=94 Identities=9% Similarity=-0.006 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCC--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CC-Cc-cHH
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKP--GTEP----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-----GV-LP-VMH 257 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~ 257 (330)
.+..+...|++++|..++++..... -..| ...+++.+...|...|++++|+.++++..+. |. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999887521 1122 2357888999999999999999999887642 21 22 245
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+++.|...|...|++++|..++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788899999999999999999998864
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0022 Score=40.20 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=52.9
Q ss_pred CCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 218 EPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+.+...+..+..++...++ .++|..++++..+.... ++.....+...+.+.|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456667777777754444 68899999998887665 77778888888889999999999999998754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=54.68 Aligned_cols=87 Identities=8% Similarity=-0.017 Sum_probs=41.6
Q ss_pred hccCcHHHHHHHHHHHHhcC---C----CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C--CCCChhhHHHH
Q 037620 91 CSAKRYDEAVELFREMEATN---C----KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR-----G--FEPEAPTYNAV 156 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l 156 (330)
.+.|++++|+.++++..+.. + +....+++.+..+|...|++++|+.+++++... | .+....+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34455555555555554321 1 112344555555555555555555555544321 1 11122345555
Q ss_pred HHHHHhhCChhHHHHHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~ 177 (330)
...|...|++++|..++++..
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 556666666666665555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.01 Score=53.56 Aligned_cols=153 Identities=9% Similarity=0.072 Sum_probs=83.4
Q ss_pred HhccCcHHHHHH-HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 90 HCSAKRYDEAVE-LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 90 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
....+++++|.+ ++.. + ++......++..+.+.|.++.|.++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 344566666655 3311 1 1012225566666777777777665421 1 111233456777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
|.++.+.+ .+...|..+...+.+.++++.|...|.++.. |..+...+...|+.+...++-+...
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77765332 3567777888888888888888888877643 2334444455566655555544444
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
..|. ++....+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4321 233333444455555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0054 Score=38.42 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 184 NTRTYDIVLHHLIKAGR---TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+...+..+..++...++ .++|..++++..+ -.+-++.....+...+...|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 4566666665554 12233444555555556666666666666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.003 Score=39.90 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVV-SYGIMINAHCSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (330)
.+...|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444445555555555444432 11333 4444444444445555555555444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0046 Score=55.84 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=96.2
Q ss_pred HHHhccCcHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 123 NGLGSEKRLSEALQ-FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 123 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
......+++++|.+ ++..+ ++......++..+.+.|.++.|..+.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 33445788888876 44221 1122337777888889999988876532 11 113345678999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-------CccHHHHHHHHHHHhccCChhH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-------LPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+..... .-+......+.......|++..
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 741 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNL 741 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHH
Confidence 9999987654 3567999999999999999999999998753210 0122223333344444444444
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
|..++.+. | -+...++.|.+.+++++|..+.+
T Consensus 742 A~~~~~~~---g------~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 742 AFNAYWIA---G------DIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHH---T------CHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHc---C------CHHHHHHHHHHcCChHHHHHHHH
Confidence 44443332 1 12334555666666666655554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.05 Score=41.77 Aligned_cols=107 Identities=12% Similarity=0.176 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CC
Q 037620 201 TEEAYSVFKRMSRKPGTEPT---VSTYEIVVRMFCY-----NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DK 271 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 271 (330)
...|...+++..+ +.|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++..+.+.++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4567777777766 4444 5578888888888 499999999999998876543467777788888874 99
Q ss_pred hhHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 272 LDDACKYFQEMLDIGIR--PPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+++.+.+++.+..... |+....+. +.-++|..++.++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhH
Confidence 99999999999986655 54433332 23345555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0029 Score=43.38 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHhccCChhH
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKARGVLP--VMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 274 (330)
....+.+.|.+.... ..++..+...+..++++++ +.+++..++++..+.+ .| +...+..+.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 345566666665542 2356677777777888887 6668888888888764 23 34556666778888999999
Q ss_pred HHHHHHHHHhc
Q 037620 275 ACKYFQEMLDI 285 (330)
Q Consensus 275 a~~~~~~~~~~ 285 (330)
|.+.++.+++.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988865
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.019 Score=39.41 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHhccCcHHHHH
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK---RYDEAVELFREMEATNCKP--SPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
...+.+-|.+....+. ++..+...+.-++++.+ +.++++.+++++.+.+ .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555544442 45555555666666655 4556666666666554 23 3444555555666666666666
Q ss_pred HHHHHHHhc
Q 037620 136 QFFGQSKKR 144 (330)
Q Consensus 136 ~~~~~~~~~ 144 (330)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0091 Score=38.28 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=9.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
+..+..++.+.|+++.|+..++++.
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333334444444444444444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.011 Score=40.03 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcCCCCCCchH-HHHHHHHH------HHhCCCHHHHHHHHHHHHh
Q 037620 183 PNTRTYDIVLHHLIKAGRT------EEAYSVFKRMSRKPGTEPTVS-TYEIVVRM------FCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~ 249 (330)
-|..+|-..+...-+.|++ ++..++|++... .++|+.. .|..-+.. +...++.++|.++|+.+++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3667777777777777888 788888887775 4555431 22222221 2234688888888888866
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
.+-.. ...|....+--.+.|+...|.+++.+.+..+.. +...+...++
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 53333 666766677677888888888888888866533 3334444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0081 Score=38.54 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC------CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 219 PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG------VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
.+...+..+...+...|++..|...++...+.. -.+....+..+..++.+.|+++.|...++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 345566788899999999999999999877631 12356788999999999999999999999998753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.82 E-value=5.5e-07 Score=73.16 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
.+|..|..+..+.+++.+|++-| .+. -|+..|..++....+.|.+++..+.+....+..- ++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 34555666666666666555433 111 1445566666666666666666666655554422 222333566666
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+. -|.-|..++.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 6666654433322 12444444455555555555555554443322 1222333344444444443
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.- ++ ..++.||-.+-.+|...+.+.-|.-.--.+.-.... ...++..|...|.+++.+.+++.-...
T Consensus 191 daA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade------L~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 191 DGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE------LEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC------CSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH------HHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 221 11 125566777777777777766665544444331111 123455566677777777766665533
Q ss_pred CCCccHHHHHHHHHHHhcc
Q 037620 251 GVLPVMHMYSTLINSLCHE 269 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~ 269 (330)
. .....+|+.|.-.|++-
T Consensus 259 E-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS
T ss_pred C-chhHHHHHHHHHHHHhc
Confidence 2 23555666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.019 Score=37.90 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCC-ccHHHHHHHHHHHhccC
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM---AMRIWDEMKARGVL-PVMHMYSTLINSLCHED 270 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 270 (330)
-........+.+.|...... + .++..+-..+..++.++..... ++.+++++...+.+ -.......+.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 33344445555555554431 2 2555555566666676665554 77777776665311 12333444555777777
Q ss_pred ChhHHHHHHHHHHhc
Q 037620 271 KLDDACKYFQEMLDI 285 (330)
Q Consensus 271 ~~~~a~~~~~~~~~~ 285 (330)
++++|.+.++.+++.
T Consensus 89 ~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777777764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.095 Score=34.91 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
...+..+...|.-++..+++.++.. +..|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444444455555555555544322 123344444444555555555555555555554444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.085 Score=35.87 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=49.4
Q ss_pred CChhhHHHHHHHHHccCCh------HHHHHHHHHHhhCCCCCChH-HHHHHHH------HHhhccChHHHHHHHHHHHhC
Q 037620 8 QELPDFNRLIDTLCKSRHV------ERAQEVFDKMKKRRFDPDIK-SYTILLE------GWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 74 (330)
-|..+|-..+...-+.|+. ++.+++|++... .+||+.. .|...+. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455566666666666666 666666666655 3444421 1111111 012224555555555555443
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 75 GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
+-.- ...|......-.+.|+...|.+++...+..+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2121 4444444455555555555555555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.40 E-value=0.21 Score=45.19 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=7.6
Q ss_pred HcCCHHHHHHHHHHhh
Q 037620 197 KAGRTEEAYSVFKRMS 212 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~ 212 (330)
..|+.+.+..+++.+.
T Consensus 536 ~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 536 NYGRQELADDLITKML 551 (963)
T ss_dssp TTTCGGGGHHHHHHHH
T ss_pred hCCChHHHHHHHHHHH
Confidence 3445555554444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.16 Score=35.78 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=47.7
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
...|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554443 2344555555555555555555555554431 223333344455555444
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.+-+.....| -++.....+...|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4443333332 1233333444555666666555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.17 Score=35.72 Aligned_cols=128 Identities=10% Similarity=0.189 Sum_probs=82.3
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
.....|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|...|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 345678888888777655 2567888888888888888888888887653 344555566677777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
...++-+.....| -++.....+...|+++++.++|.+. |-.| ..+......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 6666655554443 1455555666778888888887554 3211 1122223456667777777665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.096 Score=40.24 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHhCCCCCC---hHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-CcH
Q 037620 61 LLSMNEVYREMKDDGFEPD---VVSYGIMINAHCS-----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE-KRL 131 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 131 (330)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35666677777765 444 5577788888877 488888999888888876212477777788888774 888
Q ss_pred HHHHHHHHHHHhcCCC
Q 037620 132 SEALQFFGQSKKRGFE 147 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~ 147 (330)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.17 Score=33.75 Aligned_cols=148 Identities=14% Similarity=0.050 Sum_probs=76.1
Q ss_pred HHHHHHH--HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 13 FNRLIDT--LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 13 ~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
...|+.+ +.-.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++..-+. .|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence 3344443 34467778888887777663 24555555555444444444444444443221 111
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
...|+.......+-.+ ..+...+...+......|..++-.+++..+... .+|++...-.+..+|.+.|+..++.
T Consensus 72 s~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHH
Confidence 1122333333333221 123344455555666666666666666664332 2455666666666666666666666
Q ss_pred HHHHHHHHcCCC
Q 037620 171 RMMDEMRKCGIG 182 (330)
Q Consensus 171 ~~~~~~~~~~~~ 182 (330)
+++.+.-+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 666666666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.096 Score=34.55 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHhccCcHHH---HHHHHHHHHhcCCCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 79 DVVSYGIMINAHCSAKRYDE---AVELFREMEATNCKP--SPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+..+-..+.-++++..+... ++.+++.+...+ .| .......|.-++.+.|+++.|.+.++.+.+.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44443344444444443322 444444444432 11 2223333344445555555555555555444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.96 Score=39.31 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHH
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVS--TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDAC 276 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (330)
.+.+.|...+....+.....+... ....+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 377888888888765333322221 22233333344453556666666654432 23333444555556789999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 277 KYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
..|+.|..... ......--+.+++...|+.++|..+++.+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988864321 1233333466788889999999999988754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.47 E-value=1.5 Score=40.03 Aligned_cols=256 Identities=8% Similarity=-0.034 Sum_probs=139.1
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChH--HHHHHHHHHhhccChHHHHHHHHHHHhCCC-------CCChHHHHHHHHH-
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIK--SYTILLEGWGQQKNLLSMNEVYREMKDDGF-------EPDVVSYGIMINA- 89 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~- 89 (330)
....|+.++++.+++.....+...+.. .=..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777777776654421112222 222333445555665667777766654311 0111112223233
Q ss_pred -HhccCcHHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhhC
Q 037620 90 -HCSAKRYDEAVELFREMEATNCKPSP--HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN--AVVGAYCWSM 164 (330)
Q Consensus 90 -~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~ 164 (330)
+...++ +++...+..+.... .+.. ..-..+...+...|+.+....++..+.+.. +..+.. .+.-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333333 45566666655432 1111 122234455667888888888888776542 233333 3333444778
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTY--DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 242 (330)
+.+.+..+++.+.... .|....- .++..+|+..|+......++..+..+ ...++.-...+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999988887642 2222222 23445677889988888899988763 22334433334444555677777777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhccCCh-hHHHHHHHHHHh
Q 037620 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKL-DDACKYFQEMLD 284 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 284 (330)
+++.+.+.+ .|....-..+.-+....|+. .+++.++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777666543 34444333444444444443 577888888864
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.89 Score=42.92 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA----PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
.-|..++..+.+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.....+ ...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 44667777777788888777777666554322121 24677777888888888888777777654432 3455555
Q ss_pred HHHHHHcCC------------HHHHHHHHHHhhcCC-CCCCchHHHHHHHHHHHhCCCHHH-HHHHHHHHHh
Q 037620 192 LHHLIKAGR------------TEEAYSVFKRMSRKP-GTEPTVSTYEIVVRMFCYNAQVDM-AMRIWDEMKA 249 (330)
Q Consensus 192 ~~~~~~~~~------------~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 249 (330)
+...+..|+ .++..+++....+.. .....+.-|..|-.-+...|++.. |..+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 555554443 444555554322201 111112234555555566676664 4445565543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=1.1 Score=37.25 Aligned_cols=259 Identities=9% Similarity=0.083 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHHhh-----CCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh----cc
Q 037620 23 SRHVERAQEVFDKMKK-----RRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC----SA 93 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 93 (330)
.|+++.|++.+-.+.+ .+..........++..|...++++...+.+..+....-. .......++..+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 3678888887766553 234445677888999999999999998888777654222 1222233333222 22
Q ss_pred CcHHH--HHHHHHHHHh--cC-CCC---ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CCCCC---hhhHHHHHHHH
Q 037620 94 KRYDE--AVELFREMEA--TN-CKP---SPHIFCTLINGLGSEKRLSEALQFFGQSKKR--GFEPE---APTYNAVVGAY 160 (330)
Q Consensus 94 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 160 (330)
...+. -..+.+.+.. .| +-. .......|...+...|++.+|..++..+... +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222 1222211111 11 111 1233466788999999999999999988643 21111 34566778889
Q ss_pred HhhCChhHHHHHHHHHHH----cCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHH----HHHH
Q 037620 161 CWSMRINDAYRMMDEMRK----CGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEI----VVRM 230 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~ 230 (330)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|..+........+...+.. ++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999988743 222222 235566777788889999998888877642222223222221 1111
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc--CChhHHHHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE--DKLDDACKYFQEM 282 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 282 (330)
..-.+....-..+..........++...|..++.+|... .+++.+.+.|...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 122222122222333333222234667788888887653 3455555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.21 E-value=1.1 Score=39.87 Aligned_cols=128 Identities=9% Similarity=0.062 Sum_probs=72.9
Q ss_pred HHHHHHHHhccCc-HHHHHHHHHHHHhcCCCCChHHH-HHHHHHHhccC-cHHHHHHHHHHHHhc------CCCC-Ch--
Q 037620 83 YGIMINAHCSAKR-YDEAVELFREMEATNCKPSPHIF-CTLINGLGSEK-RLSEALQFFGQSKKR------GFEP-EA-- 150 (330)
Q Consensus 83 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 150 (330)
...++..+...++ .+.|..+|+++.... +.....+ ..++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3445555555555 577888888877764 2222222 22333333332 223344444443321 1111 11
Q ss_pred --------hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 151 --------PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 151 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
.....-...+...|+++-|+.+-++..... +.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222344566788888888888877752 3356788888888888888888888888764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.16 E-value=7.6e-05 Score=61.05 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 219 PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
-++.||..+-.+|...+.+.-|.-.--.++-. +.-...++..|-..|-+++-+.+++.-+... +.....|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 35678999999999999988776665444422 1224456677888899998888888776322 34566677776
Q ss_pred HHHHhcCchHHHHHH
Q 037620 299 QALRDEGMEETAVVL 313 (330)
Q Consensus 299 ~~~~~~g~~~~a~~~ 313 (330)
-.|.+- ++++..+-
T Consensus 271 ILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 271 ILYSKF-KPQKMREH 284 (624)
T ss_dssp HHHHSS-CTTHHHHH
T ss_pred HHHHhc-CHHHHHHH
Confidence 666654 34443333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.6 Score=38.00 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH-----hcCCCCChhhH
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML-----DIGIRPPGQLF 294 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 294 (330)
.++..+...|+++++...+..+....+. +...+..++.++.+.|+..+|++.|++.. +.|+.|+..+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444455555565555555555544322 44455555666666666666665555543 23555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.3 Score=43.26 Aligned_cols=125 Identities=11% Similarity=0.030 Sum_probs=81.0
Q ss_pred HHHHHHHhhccC-hHHHHHHHHHHHhCCCCCChHHH--HHHHHHHhccC-cHHHHHHHHHHHHhc------CCCC-Ch--
Q 037620 49 TILLEGWGQQKN-LLSMNEVYREMKDDGFEPDVVSY--GIMINAHCSAK-RYDEAVELFREMEAT------NCKP-SP-- 115 (330)
Q Consensus 49 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 115 (330)
..++..+...++ .+.|..+|+++.... |....+ ..++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555666 588999999998873 433332 23333333333 223455555444321 1111 11
Q ss_pred --------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 116 --------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 116 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
.....=...+...|+++.|+++-++..... +.+..+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122222455677899999999999998873 556789999999999999999999998876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.2 Score=40.78 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH-----cCCCCcHHH
Q 037620 119 CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK-----CGIGPNTRT 187 (330)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 187 (330)
..++..+...|+++++...+..+.... +-+...+..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555566666666666666665542 44555666666666666666666666665533 366666544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.15 Score=35.39 Aligned_cols=126 Identities=8% Similarity=0.035 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCc-cHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV-------STYEIVVRMFCYNAQVDMAMRIWDEMKARG-VLP-VMH 257 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~ 257 (330)
++-.-+..+...|.++.|+-+.+.+....+..|+. .++..+..++...+++.+|...|++..+.. ..+ +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445666777778887777777655422233332 244566677777788888888887764321 111 111
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
+...+. ....... ......+.+.-..+..+|.+.+++++|+.+++.++....+|.
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 111000 0000000 001122334444577788888888888888888776666554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=1.9 Score=35.77 Aligned_cols=256 Identities=9% Similarity=0.026 Sum_probs=142.9
Q ss_pred cChHHHHHHHHHHHhC-----CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH----hccC
Q 037620 59 KNLLSMNEVYREMKDD-----GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL----GSEK 129 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 129 (330)
|+++.|++.+..+.+. +..-+......++..|...++++...+.+..+....-.. ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 6778888777666542 234456778889999999999999988877766432122 22233333332 2222
Q ss_pred cHHH--HHHHHHHHHh--cC-CCC---ChhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCCCc---HHHHHHHHHHHH
Q 037620 130 RLSE--ALQFFGQSKK--RG-FEP---EAPTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIGPN---TRTYDIVLHHLI 196 (330)
Q Consensus 130 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 196 (330)
..+. -..+.+.... .| +.. .......|...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1222221111 11 001 1123456788899999999999999998653 22111 246677788999
Q ss_pred HcCCHHHHHHHHHHhhcC---CCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHHHHH----HHHHHH
Q 037620 197 KAGRTEEAYSVFKRMSRK---PGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMHMYS----TLINSL 266 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~---~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~ 266 (330)
..+++..|..++.++... ....|+ ...+...+..+...+++.+|-+.|.++.+. ...-+...+. .++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 999999999999986421 112222 234566777788889999998888777542 1111222221 111111
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--CchHHHHHHHH
Q 037620 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE--GMEETAVVLAQ 315 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 315 (330)
.-.+....-..++........-++...+..++.+|... .+++.+.+.++
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 11222222223333332222234566777788877643 34555544443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.74 Score=30.58 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=47.2
Q ss_pred CCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh
Q 037620 216 GTEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG 291 (330)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (330)
+-.|+..+--....++.++.+ ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+++. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 344555555555556666654 4467777777776553223445556666788888888888888888854 4543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.14 E-value=2.8 Score=39.67 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-----------------
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT----------------- 217 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 217 (330)
.++..+...+.++.+.++... .+.++...-.+..++...|++++|...|.+.....+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 445556666766666554432 2335555556778889999999999999876431100
Q ss_pred ----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-C-cc--HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 218 ----EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-L-PV--MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 218 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
..-..-|..++..+.+.+.++.+.++-...++... . ++ ...|..+.+.+...|++++|...+-.+-+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 00113467778888889999999888877765422 1 11 22578888999999999999998887765433
Q ss_pred ChhhHHHHHHHHHhcCchHH
Q 037620 290 PGQLFSNLKQALRDEGMEET 309 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~ 309 (330)
-...+..++..++..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35667777777766665443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.68 E-value=0.76 Score=28.76 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|+++++....+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344666667777777778888888888888888888888888887776532 233445665554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.33 E-value=0.88 Score=28.46 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC
Q 037620 28 RAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (330)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555544433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.47 Score=32.93 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHhhccChHHHHHHHHHHHhC-CCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDD-GFEPDV-------VSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
+..+...+.++.|+-+.+.+... +..|+. .++..+..++...+++.+|...|++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44455555555555555544332 011221 233444555556666666666666543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.44 E-value=1.6 Score=29.04 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
|.-+..+-++.+...+..|++....+.+.+|.+.+++..|.++|+-++..- .+...+|..+++-.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 455677788888888888999999999999999999999999998887653 34466677776653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.38 E-value=1.6 Score=29.00 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
.-+..+-++.+...++.|++......+++|.+.+|+..|+++|+-...+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 34566666777777888888888888888888888888888888776543 344555666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.21 E-value=1.8 Score=29.18 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh
Q 037620 217 TEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG 291 (330)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (330)
..|+..+--....++.++.+ ..+++.+++++...+..-.......+.-++.+.|++++|.++.+.+++. .|+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 35666666666777777764 4467888888877544324445556667888999999999999999875 4543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.97 E-value=2.2 Score=32.31 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...+.|+++++++....-++.. +.|...-..++..+|-.|+++.|..-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455666666666666655553 445666666666666777777776666666553
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.35 E-value=2.1 Score=26.62 Aligned_cols=86 Identities=8% Similarity=0.014 Sum_probs=51.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHH--HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILL--EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAV 100 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (330)
....++|..+-+.+...+ + .-...+| ..+...|++++|..+.+.+. .||...|.+|. -.+.|..+++.
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le 88 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALD 88 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHH
Confidence 345677777777776643 3 2223333 44667777777777665443 56777776553 34667777777
Q ss_pred HHHHHHHhcCCCCChHHHH
Q 037620 101 ELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ 119 (330)
..+..+..+| .|....|.
T Consensus 89 ~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7776776666 45444443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.24 E-value=4.5 Score=33.41 Aligned_cols=61 Identities=5% Similarity=-0.159 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+...+...|.+.|+++.|.++|.++.... .......+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666666666666666665432 22334555566666666666666666666653
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.13 E-value=2.3 Score=26.56 Aligned_cols=86 Identities=9% Similarity=0.101 Sum_probs=51.2
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHH--HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILL--EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAV 100 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (330)
....++|..+-+.+...+ + .-...|| ..+...|++++|..+.+.+. .||...|.+|. -.+.|..+++.
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le 89 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALE 89 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHH
Confidence 345677777777776643 3 2223333 44667777777777665544 56777776553 34566666776
Q ss_pred HHHHHHHhcCCCCChHHHH
Q 037620 101 ELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ 119 (330)
..+..+..+| .|....|.
T Consensus 90 ~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 6666666665 45444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.24 E-value=3.7 Score=27.70 Aligned_cols=68 Identities=9% Similarity=-0.048 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHhccCc---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 77 EPDVVSYGIMINAHCSAKR---YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.|+..+-..+.-++.+..+ ..+++.+++.+...+..........|.-++.+.|+++.|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455544445555555443 3455666666555431123333444455666666666666666666655
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.15 E-value=3.5 Score=27.38 Aligned_cols=66 Identities=8% Similarity=-0.068 Sum_probs=31.2
Q ss_pred CChhhHHHHHHHHHhhCC---hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 148 PEAPTYNAVVGAYCWSMR---INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
|+..+--.+..++.++.+ ...++.+++.+.+.+..-....+-.+.-++.+.|++++|....+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444433 234555555555443111223334444555566666666666666554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.61 E-value=9.3 Score=31.53 Aligned_cols=99 Identities=6% Similarity=-0.085 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCCchHH--H
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCG--IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK--PGTEPTVST--Y 224 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~--~ 224 (330)
.+...+...|.+.|+++.|.+.+.++.... ...-...+...++.+...+++..+...+.++... .+..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356677788888888888888888887632 2223456677778888888888888888776531 122222211 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
..-...+...+++..|-..|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111223456778887777766543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.69 E-value=8.9 Score=30.27 Aligned_cols=139 Identities=9% Similarity=0.016 Sum_probs=71.3
Q ss_pred HhhccChHHHHHHH----HHHHhCCCCCChHHHHHHHHHHhccCcHH-HHHHHHHHHHh----cC--CCCChHHHHHHHH
Q 037620 55 WGQQKNLLSMNEVY----REMKDDGFEPDVVSYGIMINAHCSAKRYD-EAVELFREMEA----TN--CKPSPHIFCTLIN 123 (330)
Q Consensus 55 ~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~ 123 (330)
+.+.|+...+-++- +-+.+.++++|......++..+.....-+ .=.++.++++. .| ..-++.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 34455554444433 44445567777777777776666544311 11222222221 11 2346667777788
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
.|.+.+++.+|...|- .|-.++...+..++.-+...+...++ +.. ....+--|...++...
T Consensus 145 ~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlf-iaRaVL~yL~l~n~~~ 205 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLY-CARAVLPYLLVANVRA 205 (336)
T ss_dssp HHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHH-HHHHHHHHHHTTCHHH
T ss_pred HHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHH-HHHHHHHHHHhCCHHH
Confidence 8888888888777662 23233335554444444333321111 112 2223344566778888
Q ss_pred HHHHHHHhh
Q 037620 204 AYSVFKRMS 212 (330)
Q Consensus 204 a~~~~~~~~ 212 (330)
|..+++...
T Consensus 206 A~~~~~~f~ 214 (336)
T 3lpz_A 206 ANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665544
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=87.59 E-value=9.5 Score=30.49 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCccH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ--VDMAMRIWDEMKARGVLPVM 256 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 256 (330)
....++.-|...|+.++|...++++.. +... ...+...+..++-+.++ .+....++..+...|+.+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC-Ccch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 356778888899999999999999864 2222 23344555555555433 45677788888877766533
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.92 E-value=6.2 Score=29.97 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=27.3
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+.|+++++++....-++.. |.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455555555555444443 445555555555555555555555555544443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.93 E-value=12 Score=29.21 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=41.1
Q ss_pred HhhccChHHHHHH----HHHHHhCCCCCChHHHHHHHHHHhccCcHH-HHHHHHHHHH----hcC--CCCChHHHHHHHH
Q 037620 55 WGQQKNLLSMNEV----YREMKDDGFEPDVVSYGIMINAHCSAKRYD-EAVELFREME----ATN--CKPSPHIFCTLIN 123 (330)
Q Consensus 55 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~ 123 (330)
+.+.|+...|-++ ++-+.+.+++++......++..+.....-+ .-.++++.++ +.+ ..-++.....+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3445555444443 344444566666666666665554422111 1122222222 111 1235566666667
Q ss_pred HHhccCcHHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFG 139 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~ 139 (330)
.|.+.|++.+|...|-
T Consensus 143 ~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHH
Confidence 7777777766665553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.60 E-value=15 Score=29.90 Aligned_cols=232 Identities=8% Similarity=0.008 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhC-CCCC---ChHHHHHHHHHHhhc-cChHHHHHHHHHHHhCCCCCChHHH--
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKR-RFDP---DIKSYTILLEGWGQQ-KNLLSMNEVYREMKDDGFEPDVVSY-- 83 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 83 (330)
.+...|...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35667888999999999999998876542 1112 234466777777664 3344444444444432111 22233
Q ss_pred ----HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CCCCChhh
Q 037620 84 ----GIMINAHCSAKRYDEAVELFREMEATNCKPS-----PHIFCTLINGLGSEKRLSEALQFFGQSKKR--GFEPEAPT 152 (330)
Q Consensus 84 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 152 (330)
..++..|...|++.+|.+++.++.+.--..| ..++..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578899999999999999988876321212 244556678889999999999998877543 12233333
Q ss_pred HHHH----HHHHH-hhCChhHHHHHHHHHHHc-C-CC-C---cHHHHHHHHHHHHHcCCHHHHHHHHH-HhhcCCCCCCc
Q 037620 153 YNAV----VGAYC-WSMRINDAYRMMDEMRKC-G-IG-P---NTRTYDIVLHHLIKAGRTEEAYSVFK-RMSRKPGTEPT 220 (330)
Q Consensus 153 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 220 (330)
...+ ...+. ..+++..|...|-+.... . .. | +...|..+ +..-.++..+...++. ...... ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhcccccccc-CCcc
Confidence 2211 23345 688999988877665421 1 10 1 11122222 2222333333333322 111111 3455
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
...+..++.++ ..+++.....+++..
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 55566666654 556776666666554
|
| >2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A | Back alignment and structure |
|---|
Probab=84.58 E-value=13 Score=29.07 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=18.3
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (330)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456777777888888888877764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.21 E-value=17 Score=29.54 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhC-CCCC---ChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHH--
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDD-GFEP---DVVSYGIMINAHCSAK-RYDEAVELFREMEATNCKPSPHIF-- 118 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 118 (330)
.+...|...|.+.|+.++..+++.....- +.-| .......++..+.... ..+.-.++..+..+.. .....+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35667888999999999999988877543 1111 2344566777776643 3344444444444321 1111222
Q ss_pred ----HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCCCcHHH
Q 037620 119 ----CTLINGLGSEKRLSEALQFFGQSKKRGFEPE-----APTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIGPNTRT 187 (330)
Q Consensus 119 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 187 (330)
..++..|...|++.+|.+++.++.+.--..| ...+..-++.|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3678999999999999999988876421212 233555677788899999999999887542 23233332
Q ss_pred HHHH----HHHHH-HcCCHHHHHHHHHHhh
Q 037620 188 YDIV----LHHLI-KAGRTEEAYSVFKRMS 212 (330)
Q Consensus 188 ~~~l----~~~~~-~~~~~~~a~~~~~~~~ 212 (330)
...+ ...+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2211 22345 6889999988777654
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.82 E-value=11 Score=27.13 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=52.2
Q ss_pred CCCCCCchHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 037620 214 KPGTEPTVSTYEIVVRMFCY--NAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP 290 (330)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 290 (330)
.....-|+.-...-+...-. .+....+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 70 ~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 70 METYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34455565543333332222 445778899999988776543 345677788888889999999999999888776663
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.71 E-value=11 Score=28.43 Aligned_cols=85 Identities=8% Similarity=-0.059 Sum_probs=37.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHH--HHHHHHHHhccC
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHM--YSTLINSLCHED 270 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 270 (330)
...+..|+.+-+..+++...... ...+..-.+.+ ...+..+.......+.+.+.+.|..++... -...+...+..|
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADV-NACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 33445667666665555321100 11111112222 233445555555666677777766554321 112233344566
Q ss_pred ChhHHHHHH
Q 037620 271 KLDDACKYF 279 (330)
Q Consensus 271 ~~~~a~~~~ 279 (330)
+.+-+..++
T Consensus 231 ~~~~v~~Ll 239 (285)
T 1wdy_A 231 HLGLVQRLL 239 (285)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 654443333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 330 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 20/176 (11%), Positives = 56/176 (31%), Gaps = 5/176 (2%)
Query: 36 MKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95
+K P+ L + + + + E + +Y + N A+
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218
Query: 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-APTYN 154
+D AV + + + + L + + A+ + ++ + +P Y
Sbjct: 219 FDRAVAAYLRALSLSPNH-AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYC 275
Query: 155 AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKR 210
+ A + +A + + ++ + + G EEA ++++
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA-NIKREQGNIEEAVRLYRK 330
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.002
Identities = 25/234 (10%), Positives = 68/234 (29%), Gaps = 9/234 (3%)
Query: 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147
+ A ++ A ++ + + L + +RL + F + K+
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--N 63
Query: 148 PE-APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYS 206
P A Y+ + Y ++ +A + ++ + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 207 VFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266
+ P S +++ + E + +S L
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN----FAVAWSNLGCVF 179
Query: 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320
+ ++ A +F++ + + + NL L++ + + AV + L
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARIFDRAVAAYLRALSL 232
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.54 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.5 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.49 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.49 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.48 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.46 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.46 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.38 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.07 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.03 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.98 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.94 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.84 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.83 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.7 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.65 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.53 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.27 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.11 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.11 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.68 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.64 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.52 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.51 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.51 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.75 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.68 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.07 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 80.43 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.8e-22 Score=160.36 Aligned_cols=299 Identities=11% Similarity=0.042 Sum_probs=236.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
+...+.+.|++++|++.++.+.+.. |-+...+..+..++.+.|++++|+..|++..+.. +-+..+|..+..++.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3455667777888887777776642 3456677777777777778888888777777664 2356677777777777777
Q ss_pred HHHHHHHHHHHHhcCC----------------------------------------------------------------
Q 037620 96 YDEAVELFREMEATNC---------------------------------------------------------------- 111 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~---------------------------------------------------------------- 111 (330)
+++|+..+........
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 7777777766543221
Q ss_pred ---CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHH
Q 037620 112 ---KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188 (330)
Q Consensus 112 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (330)
+.+...+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...++....... .+...+
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 240 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHH
Confidence 2234556666777888999999999999988774 44677888999999999999999999999988653 466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 037620 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268 (330)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (330)
..+...+.+.|++++|...|++..+. .+-+..++..+...+...|++++|...++........ +...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHH
Confidence 88899999999999999999998762 3345678889999999999999999999998876543 77788899999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 269 EDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.|++++|+..+++.++.. +.+..++..+..++.+.|++++|...+++..+..+
T Consensus 318 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999998754 33577888899999999999999999999887654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.8e-21 Score=157.01 Aligned_cols=292 Identities=14% Similarity=0.081 Sum_probs=247.9
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC--------
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP-------- 78 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------- 78 (330)
|-++.++..+..++.+.|++++|+..|+...+.. |-+..+|..+..++...|++++|+..+..........
T Consensus 30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1w3ba_ 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccc
Confidence 3457788999999999999999999999998853 4567899999999999999999999998876643211
Q ss_pred -----------------------------------------------------------ChHHHHHHHHHHhccCcHHHH
Q 037620 79 -----------------------------------------------------------DVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 79 -----------------------------------------------------------~~~~~~~ll~~~~~~~~~~~a 99 (330)
+...+..+...+...|++++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 188 (388)
T d1w3ba_ 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHH
Confidence 234455566777888999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...+++..+.. |.+..++..+...+...|++++|...+.+....+ +.+...+..+...+.+.|++++|...+++..+.
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998876 6678899999999999999999999999998875 456778888999999999999999999999886
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHH
Q 037620 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY 259 (330)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (330)
. +-+..++..+...+...|++++|...++.... ..+.+...+..+...+...|++++|...+++..+..+. +..++
T Consensus 267 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 342 (388)
T d1w3ba_ 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAH 342 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 4 23577889999999999999999999999876 35566778889999999999999999999999887544 67788
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (330)
..+..++...|++++|...|++.++.. +-+...|..+..+|.+.||
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999754 2357788999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.8e-16 Score=122.44 Aligned_cols=269 Identities=10% Similarity=0.038 Sum_probs=157.7
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
...+.+.|++++|+..|+.+.+.. |-+..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 344555566666666666655532 3345555555566666666666666666555543 22445555555555566666
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
++|.+.+++..... +.....+........ ..+.......+..+...+.+.++...+...
T Consensus 104 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT-PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS-TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc-cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 66666665555432 111110000000000 000001111122334455667777777776
Q ss_pred HHcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc
Q 037620 177 RKCGI-GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 177 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (330)
..... ..+...+..+...+...|++++|...+++.... .+-+..+|..+..++...|++++|.+.|++..+.... +
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-Y 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-c
Confidence 65432 235567777888888889999999888887652 2335667888888888999999999999888876543 5
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcC----------CCCChhhHHHHHHHHHhcCchHHHH
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDIG----------IRPPGQLFSNLKQALRDEGMEETAV 311 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (330)
..++..+..+|.+.|++++|+..|++.++.. .......|..+-.++...|+.+.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6778888888999999999999998887521 1112234555566666666665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.2e-16 Score=126.55 Aligned_cols=246 Identities=11% Similarity=0.023 Sum_probs=175.7
Q ss_pred HHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 50 ILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
.....+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...|++..+.. |-+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34555677888888888888887764 3356777777788888888888888888877765 556777777777888888
Q ss_pred cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037620 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (330)
++++|.+.+..+.... |+.............. .+.......+..+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888888887776652 2221110000000000 000111112223344556777888888
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+.........+..++..+...+...|++++|...+++....... +...|..+..++...|++++|...+++.++.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 77653344456778888999999999999999999999887554 67789999999999999999999999998764 34
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
+...+..+..+|.+.|++++|...+++..+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6778899999999999999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5e-12 Score=98.81 Aligned_cols=196 Identities=9% Similarity=0.021 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc-ChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK-NLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
.+|+.+-..+.+.+.+++|+++++.+++.. |-+..+|+....++...| ++++|+..++...+.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 345555556666677777777777776642 335556666666666554 4677777777766654 2356666666677
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC----
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR---- 165 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 165 (330)
+.+.|++++|+..++++.+.. |.+..+|..+..++.+.|++++|++.++++.+.. +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 777777777777777777665 5566777777777777777777777777776664 3355556655555544443
Q ss_pred --hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 166 --INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+++|...+....+... .+...|..+...+.. ...+++...++...
T Consensus 200 ~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 3456666666555432 244455444443332 23455555555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.1e-11 Score=95.22 Aligned_cols=198 Identities=7% Similarity=0.013 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK-RYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
..|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..+++..+.+ |-+..+|..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 445556666666777777777777777764 225566666666666654 4677777777777665 5667777777777
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC----
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR---- 200 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 200 (330)
+.+.|++++|++.+.++.+.. +.+...|..+...+...|++++|+..++.+.+.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 777777777777777777664 445667777777777777777777777777765432 45566655555555444
Q ss_pred --HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 201 --TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 201 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+++|+..+....+ ..+.+...|..+...+.. ...+++...++...+.
T Consensus 200 ~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 3556666655554 122244445444444333 3345555555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=5.1e-11 Score=94.65 Aligned_cols=299 Identities=9% Similarity=-0.006 Sum_probs=208.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-----hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC-C----ChHH
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD-----IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE-P----DVVS 82 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~ 82 (330)
.......+...|++++|+++++...+.. +.+ ...+..+...+...|++++|+..|++..+.... + ....
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3334566788999999999999988743 222 246777888999999999999999988754111 1 1344
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc----CCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC----CChh
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEAT----NCKP---SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE----PEAP 151 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 151 (330)
+..+...+...|++..+...+.+.... ..+. ....+..+...+...|+++.+...+......... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 566777888999999999998876542 1111 2245566778899999999999999888764321 2234
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHc--CCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC--chHH
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKC--GIGP----NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP--TVST 223 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 223 (330)
.+......+...++...+...+...... .... ....+..+...+...|++++|...+..........+ ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4556667777889999988888776542 1111 123455666778899999999999998876322222 2344
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCcc-HHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCC----CC
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKA----RGVLPV-MHMYSTLINSLCHEDKLDDACKYFQEMLDI----GIR----PP 290 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~----~~ 290 (330)
+..+..++...|++++|...++.... .+..|+ ...+..+..+|...|++++|.+.+++.++. |.. ..
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~ 333 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 56678899999999999999998763 233333 456778888999999999999999988642 221 11
Q ss_pred hhhHHHHHHHHHhcCchHHHHH
Q 037620 291 GQLFSNLKQALRDEGMEETAVV 312 (330)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~a~~ 312 (330)
...+..++..+...+..+++.+
T Consensus 334 ~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 334 GEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHH
Confidence 2344556666677777666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.9e-12 Score=97.47 Aligned_cols=196 Identities=11% Similarity=-0.085 Sum_probs=109.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (330)
+|..+..+|.+.|++++|+..|++.++.. |-++.+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 45555666777777777777777776665 5566677777777777777777777777776653 334556666667777
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC----H
Q 037620 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ----V 237 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~ 237 (330)
..|++++|...++...+... .+......+...+.+.+..+.+..+...........+. + .++..+..... .
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG---W-NIVEFYLGNISEQTLM 191 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH---H-HHHHHHTTSSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh---h-hHHHHHHHHHHHHHHH
Confidence 77777777777777666532 23333333344444555544444444444431111111 1 12222222211 1
Q ss_pred HHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 238 DMAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+.+...+...... .| ...+|..+...+...|++++|...|++.+...
T Consensus 192 ~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 1222211111111 11 23456667788888899999999988888643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1.5e-12 Score=103.01 Aligned_cols=277 Identities=8% Similarity=-0.036 Sum_probs=196.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHH----------HhhccChHHHHHHHHHHHhCCCCCChHH
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG----------WGQQKNLLSMNEVYREMKDDGFEPDVVS 82 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (330)
+..++......+..++|+++++.+.+.. |-+...|+..-.. +...|++++|+.+++...+.. +-+...
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 3334443444445689999999998743 2244455443322 223455789999999998875 337777
Q ss_pred HHHHHHHHhccC--cHHHHHHHHHHHHhcCCCCChHHHH-HHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 83 YGIMINAHCSAK--RYDEAVELFREMEATNCKPSPHIFC-TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 83 ~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+.++.|+..++.+.+.. +.+...|+.+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~ 187 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 777776666655 5899999999998886 56666654 45567778899999999999998885 4578889999999
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
+.+.|++++|...+...... .|. .......+...+..+++...+...... .+++...+..+...+...++..+
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHH
Confidence 99999998887665544432 111 122334456667778888888777652 33344455667777788899999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHh
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-GQLFSNLKQALRD 303 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 303 (330)
|...+.+..+..+. +...+..+..++...|++++|++.++++.+. .|+ ...|..+...+.-
T Consensus 261 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 261 SCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHhH
Confidence 99999988877544 6678888999999999999999999999876 454 4455556555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=4.7e-11 Score=93.07 Aligned_cols=186 Identities=9% Similarity=0.050 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
.++|..+|++..+...+.+...|...+....+.|+++.|..+++++.+........+|...+..+.+.|+++.|..+|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35556666665554334444555555566666666666666666665543222233455666666666666666666666
Q ss_pred HHHcCCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-C
Q 037620 176 MRKCGIGPNTRTYDIVLHH-LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-L 253 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~ 253 (330)
+.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...+......|+++.|+.+|++...... .
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 6554322 22333322222 22345666666666666652 333455566666666666777777777766655432 2
Q ss_pred cc--HHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 254 PV--MHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 254 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
|. ...|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 23566666655566777777776666654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=6.7e-11 Score=92.17 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=149.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
+..++|..++++..+...+.+...|...+....+.|+++.|..+++.+...........|...+..+.+.|+.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34678899999988765555667788888899999999999999999988644333557889999999999999999999
Q ss_pred HHhhcCCCCCCchHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC-
Q 037620 209 KRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG- 286 (330)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 286 (330)
+++.+.... +...|...... +...|+.+.|..+|+.+.+.... +...|..++......|+.+.|..+|++.+...
T Consensus 158 ~~al~~~~~--~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC--CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC--cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999873333 33344333332 34568999999999999887433 67889999999999999999999999998754
Q ss_pred CCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 287 IRPP--GQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 287 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
..|. ...|...+..-...|+.+.+..+.+++.+.-
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2332 3467777777788899999999999886644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=5.5e-11 Score=94.45 Aligned_cols=273 Identities=9% Similarity=-0.000 Sum_probs=195.8
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CC---CChHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPD----VVSYGIMINAHCSAKRYDEAVELFREMEATN--CK---PSPHIF 118 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~ 118 (330)
.......+...|++++|++++++..+.....+ ...+..+..++...|++++|...|++..+.. .. .....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33445667899999999999999987632211 2456777889999999999999999886532 11 123455
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc----CCCCC---hhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC----CCcHHH
Q 037620 119 CTLINGLGSEKRLSEALQFFGQSKKR----GFEPE---APTYNAVVGAYCWSMRINDAYRMMDEMRKCGI----GPNTRT 187 (330)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 187 (330)
..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+........ ......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 66778889999999999998876542 11111 23455667788899999999999988876422 223445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc---CCCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc---cHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSR---KPGTEP--TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP---VMHMY 259 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 259 (330)
+......+...++...+...+..... ..+..+ ....+..+...+...|+++.|...++......... ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 66667778888999998888776543 111111 12345666777889999999999999876543322 23456
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHh----cCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLD----IGIRPP-GQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
..+..++...|++++|...++++.. .+..|+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6678899999999999999998863 233333 456777889999999999999999887553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=3.7e-12 Score=100.75 Aligned_cols=261 Identities=10% Similarity=-0.013 Sum_probs=188.7
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCCC-hHHHHHHH---HH-------HhccCcHHHHHHHHHHHHhcCCCCChHH
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEPD-VVSYGIMI---NA-------HCSAKRYDEAVELFREMEATNCKPSPHI 117 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll---~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (330)
..++......+..++|++++++..+.. |+ ...|+..- .. +...|++++|+.+++...+.+ |.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 334333344445589999999999874 44 44454322 22 333456889999999998876 677788
Q ss_pred HHHHHHHHhccC--cHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037620 118 FCTLINGLGSEK--RLSEALQFFGQSKKRGFEPEAPTYN-AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH 194 (330)
Q Consensus 118 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (330)
|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+.++.|+..++.+..... -+...|..+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~ 187 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 887777766655 5889999999998874 34555554 445677778999999999999888754 367889999999
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
+...|++++|...++...+ ..|+ .......+...+..+++...+......... +...+..+...+...++.++
T Consensus 188 ~~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHH
Confidence 9999999887665554433 1111 122334455667777888888887766443 45556667777788899999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
|...+.+..+.. +.+...+..+..++.+.|++++|.+.+++..+..+
T Consensus 261 a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 261 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 999999887654 33567788899999999999999999999988765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.4e-10 Score=87.92 Aligned_cols=223 Identities=8% Similarity=-0.084 Sum_probs=149.8
Q ss_pred ChHHHHHHHHHHhhCCC-CC--ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 25 HVERAQEVFDKMKKRRF-DP--DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
+.+.++.-++++..... .+ ...+|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 45566666677665321 11 23467777889999999999999999999875 3478899999999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (330)
.|+++.+.. |.+..++..+..+|...|++++|.+.++...+.. +.+......+...+.+.+..+....+........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 999999886 6678889999999999999999999999998874 3344444444445555565555555555555432
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK-PGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
++...+. ++..+................... ....| ...+|..+...+...|++++|...|+..+...+.
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 2222222 222222221222111111111110 00111 2245677889999999999999999999876543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=4.7e-09 Score=80.74 Aligned_cols=197 Identities=10% Similarity=0.014 Sum_probs=111.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhc----CC-CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-----ChhhHHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEAT----NC-KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-----EAPTYNA 155 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 155 (330)
....|...+++++|.+.|.+..+. +- +.-..+|..+..+|.+.|++++|.+.+++..+..... ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355677888888888888877653 11 1123567777888888888888888887765431111 1233445
Q ss_pred HHHHHHh-hCChhHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch-----HHH
Q 037620 156 VVGAYCW-SMRINDAYRMMDEMRKC----GIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV-----STY 224 (330)
Q Consensus 156 l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~ 224 (330)
+...|.. .|++++|...+++..+. +.++ ...++..+...+...|++++|...++++.......+.. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555533 57788888877766431 1111 12346666777777778888877777766522221111 122
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCC-cc---HHHHHHHHHHHhc--cCChhHHHHHHHHH
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVL-PV---MHMYSTLINSLCH--EDKLDDACKYFQEM 282 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~ 282 (330)
...+..+...|+++.|...+++..+..+. ++ ......++.++.. .+.+++|+..|+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33444556677777777777776654321 11 1233445555443 23355666555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.8e-08 Score=72.07 Aligned_cols=121 Identities=8% Similarity=-0.051 Sum_probs=67.5
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+...|+++.|++.|.++. +|+..+|..+..++...|++++|++.|++.++.+ |.+...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence 445556666665555431 3455555556666666666666666666665554 45555566666666666666666
Q ss_pred HHHHHHHHhcCCC------------C---ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 135 LQFFGQSKKRGFE------------P---EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 135 ~~~~~~~~~~~~~------------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
.+.|++....... . ...++..+..++.+.|++++|.+.+.......
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666555432100 0 01234455566667777777777776666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=4.8e-08 Score=69.83 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=107.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.|+. ...+...|+++.|++.|+.+. +|+..+|..+..++...|++++|++.|++.++.+ +-+...|..+..++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4554 556788999999999998653 4678889999999999999999999999999986 447889999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCC--------------CC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 92 SAKRYDEAVELFREMEATNC--------------KP-SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~--------------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (330)
+.|++++|++.|++...... +. ...++..+..++.+.|++++|.+.+....+....
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999875310 01 1355667888999999999999999998877433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=7.8e-08 Score=73.74 Aligned_cols=202 Identities=9% Similarity=0.024 Sum_probs=133.6
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhC----CCC-CChHHHHHHHHHHhccCcHHHHHHHHHHHHhc----C-CCCChHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDD----GFE-PDVVSYGIMINAHCSAKRYDEAVELFREMEAT----N-CKPSPHI 117 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 117 (330)
|......|...+++++|.+.|.+..+. +-+ .-..+|..+..+|.+.|++++|.+.+++..+. + ......+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 555567788889999999999888653 111 12457888889999999999999999887543 1 1112345
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc------H
Q 037620 118 FCTLINGLG-SEKRLSEALQFFGQSKKR----GFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN------T 185 (330)
Q Consensus 118 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 185 (330)
+..+...|. ..|++++|.+.+.+..+. +.++ ...++..+...+...|++++|...++++........ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 566666664 469999999999887542 1111 134577788899999999999999999877432211 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHHHh--CCCHHHHHHHHHHHHh
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV---STYEIVVRMFCY--NAQVDMAMRIWDEMKA 249 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~--~~~~~~a~~~~~~~~~ 249 (330)
..+...+..+...|++..|...+++..+.....++. .....++.++.. .+.+++|+.-|+.+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 233455566778899999999999987632222222 234556666554 2346777777665443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5.1e-08 Score=63.50 Aligned_cols=90 Identities=16% Similarity=0.025 Sum_probs=47.1
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
..+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..+.+..+.+ |.++..|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 33445555555555555555443 2244445555555555555555555555555544 445555555555555555555
Q ss_pred HHHHHHHHHHhc
Q 037620 133 EALQFFGQSKKR 144 (330)
Q Consensus 133 ~a~~~~~~~~~~ 144 (330)
+|+..+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=6.6e-08 Score=62.95 Aligned_cols=90 Identities=12% Similarity=0.045 Sum_probs=44.0
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
..+.+.|++++|+..|+...+.. |-+...|..+..++...|++++|+..+....+.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 34444555555555555544432 3344445555555555555555555555555443 224444555555555555555
Q ss_pred HHHHHHHHHHhc
Q 037620 98 EAVELFREMEAT 109 (330)
Q Consensus 98 ~a~~~~~~~~~~ 109 (330)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.2e-07 Score=65.50 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=54.4
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..|++.++.+ +.+..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 334556666666666666666553 2355555666666666666666666666666554 44555666666666666666
Q ss_pred HHHHHHHHHHHhc
Q 037620 132 SEALQFFGQSKKR 144 (330)
Q Consensus 132 ~~a~~~~~~~~~~ 144 (330)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666666555
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.84 E-value=7.1e-06 Score=61.54 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhh----ccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ----QKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
|+..+..|-..+...+++++|++.|+...+.| +..++..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34555666666667777777777777776654 45555555555544 456666777766666554 223333
Q ss_pred HHHHHHhc----cCcHHHHHHHHHHHHhcC
Q 037620 85 IMINAHCS----AKRYDEAVELFREMEATN 110 (330)
Q Consensus 85 ~ll~~~~~----~~~~~~a~~~~~~~~~~~ 110 (330)
.+...+.. ..+.+.|...++.....|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhh
Confidence 33333222 345566666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.2e-07 Score=65.60 Aligned_cols=109 Identities=6% Similarity=-0.012 Sum_probs=92.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
+..-...|.+.|++++|+..|+...+.. |-+...|..+..++...|++++|+..|++.++.. +-+..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 4455667889999999999999999864 5578899999999999999999999999999875 4477899999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
.|++++|...+++..... |-+...+..+..+
T Consensus 91 ~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK-PHDKDAKMKYQEC 121 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 999999999999999876 5556655554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.82 E-value=8.4e-06 Score=61.15 Aligned_cols=224 Identities=11% Similarity=0.027 Sum_probs=123.0
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|..++......+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666667777788888888888887765 45555556666654 456777777777776655 223333
Q ss_pred HHHHHHh----ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 120 TLINGLG----SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 120 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
.+...+. ...+.+.|...+....+.|. ......+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 3333332 24566777777777766652 2222223333322 223444555555544432 45555556
Q ss_pred HHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 037620 192 LHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY----NAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263 (330)
Q Consensus 192 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (330)
...+.. ..+...+...++...+ .+ +......+...|.. ..+++.|..+|....+.| ++..+..|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~-~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccc-cc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 665554 3345555555555544 11 33344444444443 346666666666666654 233444455
Q ss_pred HHHhc----cCChhHHHHHHHHHHhcC
Q 037620 264 NSLCH----EDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 264 ~~~~~----~~~~~~a~~~~~~~~~~~ 286 (330)
..|.. ..+.++|.++|++..+.|
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 55443 335666666666666555
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=5.4e-08 Score=70.20 Aligned_cols=97 Identities=9% Similarity=-0.064 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...+......+.+.|++++|+..|.+.+... +.+...|..+..+|.+.|++++|+..|++.++.. |-+..+|..+..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33334444444444444444444444444432 2234444444444444444444444444444433 333444444444
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~ 142 (330)
+|.+.|++++|...|+++.
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=6.4e-08 Score=69.77 Aligned_cols=99 Identities=9% Similarity=-0.031 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV 157 (330)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (330)
|+...+......+.+.|++++|+..|++.+... |.++.+|..+..+|.+.|++++|+..+.++.+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566777777888888899999999998888876 7788888888888999999999999998888763 34567788888
Q ss_pred HHHHhhCChhHHHHHHHHHHH
Q 037620 158 GAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~ 178 (330)
.+|...|++++|...|++...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.70 E-value=1.5e-07 Score=60.68 Aligned_cols=85 Identities=8% Similarity=0.032 Sum_probs=38.8
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
.+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.. |.+..++..+..+|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 3444444444444444444432 1134444444444444444444444444444443 3344444444444444444444
Q ss_pred HHHHHHH
Q 037620 134 ALQFFGQ 140 (330)
Q Consensus 134 a~~~~~~ 140 (330)
|.+.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.69 E-value=1.7e-07 Score=60.39 Aligned_cols=89 Identities=9% Similarity=-0.024 Sum_probs=64.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
+...+.+.|++++|+..|++..... |-+..+|..+..++.+.|++++|+..+++..+.. +.+...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 4556667777777777777777765 5567777777777777777777777777777664 4456677777777777777
Q ss_pred hhHHHHHHHHH
Q 037620 166 INDAYRMMDEM 176 (330)
Q Consensus 166 ~~~a~~~~~~~ 176 (330)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.1e-07 Score=62.14 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=49.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc---ChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHH
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK---NLLSMNEVYREMKDDGFEPD-VVSYGIMINAH 90 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~ 90 (330)
.++..+...+++++|.+.|+.....+ |.++.++..+..++.+.+ ++++|+.+|+++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 44555555556666666666655532 334555555555555433 33345555655554432222 12444555556
Q ss_pred hccCcHHHHHHHHHHHHhcC
Q 037620 91 CSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~ 110 (330)
.+.|++++|.+.|+++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 66666666666666655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=9e-08 Score=62.55 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCcc-HHHHHHHHH
Q 037620 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPV-MHMYSTLIN 264 (330)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 264 (330)
..++..+...+++++|.+.|++... ..+.+..++..+..++.+.++ +++|+.+++++...+..|+ ..++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4566777788888888888888776 234456677777777776544 4468888888777654444 236677778
Q ss_pred HHhccCChhHHHHHHHHHHhcC
Q 037620 265 SLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+|.+.|++++|++.|+++++..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHhC
Confidence 8888888888888888888653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=3.4e-06 Score=58.65 Aligned_cols=63 Identities=10% Similarity=-0.059 Sum_probs=44.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
+|+.+..+|.+.|++++|+..++..+..+ |.++.++..+..+|...|++++|...|+++.+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45556667777777777777777777765 5567777777777777777777777777776653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.8e-06 Score=59.04 Aligned_cols=81 Identities=9% Similarity=-0.097 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (330)
+|+.+..+|.+.|++++|+..++..++.++. ++..+..+..+|...|++++|+..|++.++.. +.+......+.....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5667888889999999999999999887655 77888889999999999999999999998764 225555555555444
Q ss_pred hcC
Q 037620 303 DEG 305 (330)
Q Consensus 303 ~~g 305 (330)
+.+
T Consensus 142 ~~~ 144 (170)
T d1p5qa1 142 RIR 144 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.52 E-value=9.1e-05 Score=56.88 Aligned_cols=272 Identities=9% Similarity=0.041 Sum_probs=156.8
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
.||..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 45666667778888899999999999986654 6777888888999999888776542 66788888
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
...+.+......+ .+.......++.....++..|-..|.+++...+++...... .++...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888877765443 22233344566666788889999999999999998876542 456777888888888764 3
Q ss_pred hHHHHHHHHHHHcCCCCcH----------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 037620 167 NDAYRMMDEMRKCGIGPNT----------RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (330)
++..+.+... +...+. ..|..++..|.+.|+++.|..+.-.- .++..-....+..+.+..+
T Consensus 149 ~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~------~~~~~~~~~f~e~~~k~~N 219 (336)
T d1b89a_ 149 QKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH------PTDAWKEGQFKDIITKVAN 219 (336)
T ss_dssp HHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS------TTTTCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHhc---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc------chhhhhHHHHHHHHHccCC
Confidence 3333333322 111111 12344455555555555554443321 1122222334455566666
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHH-------------HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 237 VDMAMRIWDEMKARGVLPVMHMYS-------------TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
.+...++.....+.. | ...+ .++..+.+.++......+++...+.+ +....+.+...|..
T Consensus 220 ~e~~~~~i~~yL~~~--p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie 292 (336)
T d1b89a_ 220 VELYYRAIQFYLEFK--P--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFIT 292 (336)
T ss_dssp THHHHHHHHHHHHHC--G--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC--H--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhC
Confidence 665555555444321 2 1223 34444455566666666666655443 45678888999999
Q ss_pred cCchHHHHHHHHH
Q 037620 304 EGMEETAVVLAQK 316 (330)
Q Consensus 304 ~g~~~~a~~~~~~ 316 (330)
.++++.-.+..+.
T Consensus 293 ~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 293 EEDYQALRTSIDA 305 (336)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHH
Confidence 9987665554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.2e-06 Score=57.71 Aligned_cols=103 Identities=11% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC---c--c-HHHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL---P--V-MHMYST 261 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~-~~~~~~ 261 (330)
+..+...+...|++++|+..|.+..+. .+.+...+..+..+|...|++++|...++++++.... + . ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 445666777888888888888877762 3345667777788888888888888888877654211 0 0 235566
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF 294 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 294 (330)
+...+...+++++|+..|++.+.. .++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 666777777888888888777653 3455443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.40 E-value=8.1e-06 Score=55.55 Aligned_cols=62 Identities=13% Similarity=-0.023 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+|..+..+|.+.|++++|++.+++.++.+ |.+..+|..+..++...|++++|...|.+..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555555566666666666555554 445555555556666666666666666555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.8e-06 Score=55.30 Aligned_cols=92 Identities=10% Similarity=0.137 Sum_probs=44.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-------hhHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA-------PTYNAVV 157 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~ 157 (330)
.+...+.+.|++++|+..|.+.++.+ |.+..++..+..+|.+.|++++|++.+.++++.. +.+. .+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544 4445555555555555555555555555544321 0011 1233334
Q ss_pred HHHHhhCChhHHHHHHHHHHH
Q 037620 158 GAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~ 178 (330)
..+...+++++|...++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 444444555555555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.37 E-value=1.6e-05 Score=55.00 Aligned_cols=95 Identities=5% Similarity=-0.051 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (330)
.+|+.+..+|.+.|++++|+..++...+..+. +..+|..+..++...|++++|...|+++++.. +.+......+....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35666788889999999999999999887654 77888889999999999999999999998764 33455555554444
Q ss_pred HhcCchH-HHHHHHHHHH
Q 037620 302 RDEGMEE-TAVVLAQKID 318 (330)
Q Consensus 302 ~~~g~~~-~a~~~~~~~~ 318 (330)
.+.+... ...+++..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 4444332 3344444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.36 E-value=1.1e-05 Score=54.82 Aligned_cols=64 Identities=9% Similarity=-0.074 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
.+|..+..+|.+.|++++|+..++..++.++. +..+|..+..++...|++++|+..|++.++..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46677888889999999999999998887654 77888899999999999999999999988764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.35 E-value=5.4e-06 Score=57.56 Aligned_cols=85 Identities=8% Similarity=0.010 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
....|..+..++.+.|++++|+..+.++++.. |.++.+|..+..++...|++++|.+.|+++.+.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566777788888888888888888888776 6778888888888888888888888888888774 335555655555
Q ss_pred HHHhhCC
Q 037620 159 AYCWSMR 165 (330)
Q Consensus 159 ~~~~~~~ 165 (330)
+..+...
T Consensus 154 ~~~~l~~ 160 (169)
T d1ihga1 154 VKQKIKA 160 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.35 E-value=6.4e-06 Score=57.17 Aligned_cols=87 Identities=5% Similarity=-0.109 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 037620 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192 (330)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (330)
.....+..+..++.+.|++++|+..+.++++.. +.+...|..+..++...|++++|...|+...+... .+......+.
T Consensus 75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~ 152 (169)
T d1ihga1 75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345677778889999999999999999998875 55777888899999999999999999999888642 2555566555
Q ss_pred HHHHHcCCH
Q 037620 193 HHLIKAGRT 201 (330)
Q Consensus 193 ~~~~~~~~~ 201 (330)
.+..+....
T Consensus 153 ~~~~~l~~~ 161 (169)
T d1ihga1 153 KVKQKIKAQ 161 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.3e-07 Score=75.04 Aligned_cols=227 Identities=8% Similarity=0.008 Sum_probs=125.6
Q ss_pred HHHHHHHHHhhCCCCCC-hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 28 RAQEVFDKMKKRRFDPD-IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV-VSYGIMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (330)
+|.+.|++..+. .|+ ..++..+..++...+++++| |++++.. .|+. ..++.. ..+. ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHH-HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHH-HHHHHHHHHHHHH
Confidence 678888888763 343 45666677777777877765 6676654 2321 111111 1111 1124556777777
Q ss_pred HHhcCCCCChHHHHHHH--HHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC
Q 037620 106 MEATNCKPSPHIFCTLI--NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP 183 (330)
Q Consensus 106 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (330)
..+....++..-....+ ......+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 66544233332222221 22233455666666555554442 3456677788888889999999988887765532
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 037620 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (330)
...++..+...+...|++++|...|++..+ -.+.+...|+.|...+...|+..+|...|.+...... |.+.++..|.
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~ 227 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHH
Confidence 235677788899999999999999999887 2344567899999999999999999999999987754 4677788887
Q ss_pred HHHhccC
Q 037620 264 NSLCHED 270 (330)
Q Consensus 264 ~~~~~~~ 270 (330)
..+.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7765433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=5.4e-07 Score=74.41 Aligned_cols=209 Identities=7% Similarity=-0.058 Sum_probs=114.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh-HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH--H
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI-KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN--A 89 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~ 89 (330)
+..+..++...|++++| |+.+...+ |+. ..++.. ...-...+..+.+.++...+....++..-....+. .
T Consensus 23 ~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e--~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l 95 (497)
T d1ya0a1 23 KLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE--QDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL 95 (497)
T ss_dssp SSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH--HHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHH
T ss_pred HhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH--HHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHH
Confidence 34444556666677665 56665431 221 112111 11112234567777777776543444333322222 2
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
....+.++.++..+....... +++...+..+...+.+.|+.+.|...+....... ....+..+...+...|++++|
T Consensus 96 ~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A 171 (497)
T d1ya0a1 96 EAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQA 171 (497)
T ss_dssp HHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHH
Confidence 223455666666665554443 5567778888889999999999998887766542 235677788999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA 235 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (330)
...|++..+.. +.+...|+.+...+...|+..+|...|.+... -.+|...++..|...+.+..
T Consensus 172 ~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 172 ESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 99999999874 33678999999999999999999999999886 34567778888887765543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.28 E-value=5.1e-05 Score=52.36 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
|..+..+|.+.|++++|+..+++.+..+ |.+..+|..+..++...|++++|...|.++.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445556666666666666666666654 555666666666666666666666666666655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.27 E-value=1.8e-05 Score=55.19 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH-----hcCCCCChhh
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK-----KRGFEPEAPT 152 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 152 (330)
..+..+..++...|++++|+..++++.... |-+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 445566777777777777777777777766 6677777777777777777777777777653 3466666543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.23 E-value=6.3e-05 Score=52.33 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH-----hcCCCCChhhHH
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML-----DIGIRPPGQLFS 295 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 295 (330)
..+..+..++...|++++|...++.+.+.... +...|..++.++.+.|+..+|++.|+++. +.|+.|+..+-.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 45677888999999999999999999988665 78899999999999999999999999874 368999876644
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.11 E-value=2.2e-05 Score=52.69 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-----------cHHHHHHHHHHHHhc
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEK-----------RLSEALQFFGQSKKR 144 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~ 144 (330)
+++|+..|++.++.+ |.+..+|..+..+|...| .++.|.+.|++..+.
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 355666666666554 555556666655554433 245555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.11 E-value=4.9e-06 Score=62.05 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=22.2
Q ss_pred ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (330)
.|++++|+..+++.++.. +-+...+..+...++..|++++|.+.|+...+.
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444444444444442 223344444444444444444444444444433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.08 E-value=4.7e-06 Score=62.14 Aligned_cols=123 Identities=8% Similarity=-0.055 Sum_probs=85.2
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHhccCcHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD-VVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~ 97 (330)
-..+.|++++|+..++..++.. |-|...+..+...++..|++++|...++...+.. |+ ...+..+...+...+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccH
Confidence 4567899999999999999854 6688999999999999999999999999999873 43 444444444443333333
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
++..-.......+-++....+......+...|+.++|.+.+.++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 32221111111121233344455566788889999999999888776
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.94 E-value=6.4e-05 Score=50.35 Aligned_cols=72 Identities=10% Similarity=-0.035 Sum_probs=48.0
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc----------CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE----------KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
-+.+.+++|.+.|+...+.. |.++.++..+..++... +.+++|+..|+++.+.. +.+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 34456777777777777766 66677777777666543 34567777777777764 44566777777777
Q ss_pred HhhC
Q 037620 161 CWSM 164 (330)
Q Consensus 161 ~~~~ 164 (330)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 6554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.0043 Score=47.38 Aligned_cols=241 Identities=13% Similarity=0.076 Sum_probs=143.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
-|..++..+.+.++++.|.+++... + +..+|..+...+.+......+ .+.......+......++..|-
T Consensus 42 d~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye 110 (336)
T d1b89a_ 42 NFGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQ 110 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHH
Confidence 4567888888888888887776543 2 667888888888877665443 2223333446666678899999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhh
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP--------EAPTYNAVVGAYCWS 163 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~ 163 (330)
..|.+++...+++...... ..+...++.++..|++.+. ++..+.+...... +.+ ....|..++-.|.+.
T Consensus 111 ~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 111 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 9999999999999887554 6677888999999988764 4444444332111 111 112244555556666
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHH-------------HHHH
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEI-------------VVRM 230 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------l~~~ 230 (330)
|.++.|..++ ..+ .++..-....+..+.+..+++...+++....+ ..|+ ..+. ++..
T Consensus 188 ~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~---~~p~--~i~~lL~~v~~~~d~~r~V~~ 257 (336)
T d1b89a_ 188 EEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE---FKPL--LLNDLLMVLSPRLDHTRAVNY 257 (336)
T ss_dssp TCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH---HCGG--GHHHHHHHHGGGCCHHHHHHH
T ss_pred CCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHH---cCHH--HHHHHHHHhccCCCHHHHHHH
Confidence 6666554432 221 12222333444555555555555555544433 1122 2233 3444
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
+.+.++.......++...+.+ +..+.+++...|...++++.-.+..
T Consensus 258 ~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 258 FSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 455555555555665555444 3457888888888888875544433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.68 E-value=0.00056 Score=46.23 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=59.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCC----------chHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCc--
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEP----------TVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-----GVLP-- 254 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-- 254 (330)
...+...|++++|+..|++..+.....| ....|+.+..+|...|++++|...+++..+. ...+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445556777777777766653111111 1345677778888888888888887776542 1111
Q ss_pred ---cHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 255 ---VMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 255 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
....+..+..+|...|++++|+..|++.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123466678888889999999998888764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00033 Score=42.78 Aligned_cols=69 Identities=9% Similarity=-0.086 Sum_probs=31.6
Q ss_pred HHHHHHhhccChHHHHHHHHHHHhCC-----CCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 50 ILLEGWGQQKNLLSMNEVYREMKDDG-----FEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
.+...+.+.|++++|+..|++..+.. ..+ ...++..+..++.+.|++++|+..++++++.. |-+..+++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 34444455555555555555444320 001 12344455555555555555555555555543 33333333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.61 E-value=0.00078 Score=45.47 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=42.4
Q ss_pred HHhhccChHHHHHHHHHHHhCCCC-C----------ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCC---
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFE-P----------DVVSYGIMINAHCSAKRYDEAVELFREMEATN-----CKPS--- 114 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~--- 114 (330)
.+...|++++|+..|++.++.... | ...+|+.+..+|...|++++|...+++.+... ..++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 334445556665555555542100 1 12345555566666666666665555544310 0111
Q ss_pred --hHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 115 --PHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 115 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
..++..+..+|...|++++|+..|++..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1133444555555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00037 Score=42.55 Aligned_cols=66 Identities=8% Similarity=-0.074 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATN------CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
...+..+...+.+.|+++.|+..|++..+.. .+....++..+..++.+.|++++|...++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3344456667777777777777777765431 11124566667777777777777777777776663
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.51 E-value=0.0036 Score=40.70 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAV 100 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 100 (330)
++++|+.+|++..+.| +...+..|. .....+.++|.+++++..+.| ++..+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4556666666655544 222222222 123344555555555555544 23333333333332 23445555
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcC
Q 037620 101 ELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 145 (330)
++|++..+.+ ++.....|...|.. ..+.++|.+++++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555555444 22233333333332 234445555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.29 E-value=0.0083 Score=38.90 Aligned_cols=110 Identities=11% Similarity=0.042 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHH
Q 037620 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEAL 135 (330)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 135 (330)
++++|+++|.+..+.| +...+..|. .....+.++|++++++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5667777777777665 222222232 233456667777777766655 33444444444432 34566677
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcC
Q 037620 136 QFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 180 (330)
++|++..+.| ++.....|...|.. ..+.++|..+++...+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 7777666665 33444444444443 235666666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.51 E-value=0.039 Score=34.56 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=68.0
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
-.|..++..+++.+..... +..-|+.++.-....-+-+....+++.+-+-.... .+++.....
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~vv 76 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 76 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHHH
Confidence 3456666666666665532 44455555555555555555555555554321111 112222222
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
..+-.+- .+...++..++...++|+-++-.++++.+.+.+ .|++.....+..+|.+.|...++..++.+.=+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 2211110 122334444555555666666666666655533 5555666666666666666666666666655554
Q ss_pred C
Q 037620 322 K 322 (330)
Q Consensus 322 ~ 322 (330)
.
T Consensus 151 ~ 151 (161)
T d1wy6a1 151 E 151 (161)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.37 E-value=0.049 Score=34.10 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=70.5
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
+.-.|.+++..+++.+.... .+..-||-+|.-....-+-+-..++++..-+. .|. ...++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence 44567777778877777663 25555666665555555555555555544322 010 011122222
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...+-.+ ..+...+...+......|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|...++.+++.+.-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222111 1223334444555555666666666665554433 455555555666666666666666666666655
Q ss_pred CC
Q 037620 180 GI 181 (330)
Q Consensus 180 ~~ 181 (330)
|+
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 54
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.069 Score=33.53 Aligned_cols=67 Identities=7% Similarity=0.030 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 219 PTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 219 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
++..+--....+++++. +.++++.+++++.+.+..-....+..|.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44444444455555443 45677778877776532211245556666777888888888888888765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.72 Score=36.42 Aligned_cols=118 Identities=10% Similarity=0.055 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHH--HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHH
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVST--YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDAC 276 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (330)
.+.+.+...+..........++... ...+.......+..+.+...+......+. +.......+......+++..+.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHH
Confidence 5677788888777653333322211 11222233345667777777777665543 3344444555566788999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 277 KYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
..+..|.... .....-.--+.+++...|+.+.|..++...-.
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 9888774322 11233334477889999999999999988753
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.76 E-value=0.33 Score=28.63 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
+.-++.+-+..+......|++....+.+++|.+.+++..|+++++....+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 344566666677777777888888888888888888888888887776532 234555655544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.68 E-value=0.43 Score=29.77 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCCch-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 183 PNTRTYDIVLHHLIKAG---RTEEAYSVFKRMSRKPGTEPTV-STYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
++..+--....++.++. +.++++.+++.+.+. .+.+. ..+..|.-+|.+.|++++|.+.++.+.+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 34444444555555443 334566666666541 11121 344455556666666666666666666553
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.07 E-value=0.44 Score=28.07 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 28 RAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444444444455555555555555555555555555554443
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.43 E-value=5.4 Score=25.65 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=96.7
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
..++.+-|.++ ..+.|++--...|..-+..+...|++.+|-++-....+ |+-.+..|.+.+-..-...|+..-.+.
T Consensus 11 ~l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~ 86 (157)
T d1bpoa1 11 VLQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQ 86 (157)
T ss_dssp TTCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred ccCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHH
Confidence 34666666554 34456666777788888889999999999988866654 455588887777666666788888888
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
+|..+.+.+ +.+..--.-+++.....|+.+-..+++.+ ..+..+...-. ++ +.-+..-|..+|.+.
T Consensus 87 YF~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~Wl~e---~KL~~SEeLGD-lv----~~~d~~lAl~IY~ka 152 (157)
T d1bpoa1 87 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRA 152 (157)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred HHHHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHHHHc---CCccCcHHHHH-HH----HHcCHHHHHHHHHHc
Confidence 999888887 66766666777888888888877777554 32333433222 22 223555666666543
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