Citrus Sinensis ID: 037695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
Protein Sequence
MGTQDSSDLSLFGSDNAEFDKSEKCDFDIFAEEVEEGEDGSDSDDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVFLNS
Secondary Structure (PSIPRED)
ccccccccHHccccccccccccccccHHHHHHHHHccccccccccHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccEcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgtqdssdlslfgsdnaefdksekcdfdIFAEeveegedgsdsddhfmvLDSFDKYRVNREEIRRVVleedefrhPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWadrqwryrhdpIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKaavapnllicNTAIHVLVVGNKLAKALRFLERMQlagitpnvltYNCLIKGYCDLHRIKDAIKLIdemplkgcspdkvsYYTVMGYLCKEKRIKEVRDLMEKMVndsnlfhdqGRIEEAKELVNQMsqmgcipdvVTYTAVVNGFCRVGELDQAKKMLQQMyhhgckpntvSYTAFLNGLchngksleAREMINTseeewwtpnaiTYSVVMHglrregklsEACDVVREMVkkgffptpVEINLLIQSLCREGKMDGAKKFMQECLnkgcavnvvNFTSLIRGFCQKGDLEEALSLLDDmylckkdpdtvTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNrnlipdlklCKKVSERLILEGKSEEADTLMLRFVErghiqpkseEHLQRQRVFLNS
Flexible Loop (DISEMBL)
mgtqdssdlslfgsdnaefdksekCDFDIFAEEVeegedgsdsddhFMVLDSFDKYRVNREEIRrvvleedefrhplvREVCRLIelrsawspkleGELRNLLRSLKPRQICAVLRSQADERVALQFfywadrqwryrHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIdemplkgcspdkvSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTseeewwtpnAITYSVVMHGLRREGKLSEACDVVREMVkkgffptpvEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRnlipdlklcKKVSERLilegkseeadTLMLRFVERghiqpkseehlqrqrvflns
Low Complexity Region (SEG)
MGTQDSSDLSLFGSDNAEFDKSEKCDFDIFAeeveegedgsdsddHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVFLNS
Disordered region (IsUnstruct)
**************************FDIF***************HFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGK***ADTLMLRFVE*********************
Disordered Region (DISOPRED)
*****SS*LSLFGSDNAEFDKSEKCDFDIFAEEVEEGEDGSDSDDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVFLNS
Disordered Region (DISEMBL)
********LSLFGSDNAEFDKSEKCDFDIFAEE*********SDDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVFLNS
Disordered Region (DISPRO)
****DSSDLSLFGSDNAEFDKSEKCDFDIFAEEVEEGEDGSDSDDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVFLNS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTQDSSDLSLFGSDNAEFDKSEKCDFDIFAEEVEEGEDGSDSDDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVFLNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	701	2.2.26 [Sep-21-2011]
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.813	0.755	0.271	2e-66
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.676	0.792	0.294	4e-66
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.694	0.667	0.300	4e-65
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.817	0.626	0.282	2e-64
Q0WVK7	741	Pentatricopeptide repeat-	no	no	0.681	0.645	0.280	1e-63
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.690	0.647	0.300	1e-62
Q9SR00	602	Pentatricopeptide repeat-	no	no	0.611	0.712	0.282	6e-62
O49436	660	Pentatricopeptide repeat-	no	no	0.587	0.624	0.311	2e-59
Q9LPX2	644	Pentatricopeptide repeat-	no	no	0.704	0.767	0.276	7e-58
Q9M302	659	Pentatricopeptide repeat-	no	no	0.760	0.808	0.258	2e-57

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  254 bits (648), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 169/623 (27%), Positives = 296/623 (47%), Gaps = 53/623 (8%)

Query: 115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIEC 174
           LRSQ D+  AL+ F  A ++  +  +P +Y  +L  L ++      K++L  M     E 
Sbjct: 57  LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116

Query: 175 RPEAFSYLMVAYSRAGKLRNAMYVLS-MMQKAAVAPNLLICNTAIHVLVVGNKLAKALRF 233
               F  L+ +Y++       + V+  M+ +  + P+    N  +++LV GN L      
Sbjct: 117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176

Query: 234 LERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVM-GYL- 291
             +M + GI P+V T+N LIK  C  H+++ AI ++++MP  G  PD+ ++ TVM GY+ 
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE 236

Query: 292 ---------------------------------CKEKRIKEVRDLMEKMVNDSNLFHDQ- 317
                                            CKE R+++  + +++M N    F DQ 
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296

Query: 318 ------------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQM 365
                       G ++ A E+++ M Q G  PDV TY +V++G C++GE+ +A ++L QM
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356

Query: 366 YHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKL 425
               C PNTV+Y   ++ LC   +  EA E+      +   P+  T++ ++ GL      
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416

Query: 426 SEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL 485
             A ++  EM  KG  P     N+LI SLC +GK+D A   +++    GCA +V+ + +L
Sbjct: 417 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476

Query: 486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL 545
           I GFC+     EA  + D+M +     ++VTY T+ID L K+ RVE+A +LM +M+ +G 
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536

Query: 546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--QKCRTAYNQVIENLCSFGYLEEAGK 603
            P   TY +++  +C+ G ++    +++ M S   +     Y  +I  LC  G +E A K
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI 663
           +L  +            + +++    K     A  +   M  +N  P   +  ++  R +
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGL 656

Query: 664 LEGKS--EEADTLMLRFVERGHI 684
             G     EA   ++  +E+G +
Sbjct: 657 CNGGGPIREAVDFLVELLEKGFV 679

May be involved in female gametophyte development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  253 bits (645), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/512 (29%), Positives = 262/512 (51%), Gaps = 38/512 (7%)

Query: 188 RAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVL 247
           R G+L      L  M      P+++ C T I       K  KA + LE ++ +G  P+V+
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173

Query: 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM 307
           TYN +I GYC    I +A+ ++D M +   SPD V+Y T++  LC               
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLC--------------- 215

Query: 308 VNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH 367
                   D G++++A E++++M Q  C PDV+TYT ++   CR   +  A K+L +M  
Sbjct: 216 --------DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRD 267

Query: 368 HGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSE 427
            GC P+ V+Y   +NG+C  G+  EA + +N        PN IT+++++  +   G+  +
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327

Query: 428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIR 487
           A  ++ +M++KGF P+ V  N+LI  LCR+G +  A   +++    GC  N +++  L+ 
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387

Query: 488 GFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP 547
           GFC++  ++ A+  L+ M      PD VTY T++ AL K+G+VE+A E++ ++ SKG  P
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447

Query: 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--QKCRTAYNQVIENLCSFGYLEEAGKIL 605
            ++TY TVI    + G+    +KLL++M +K  +     Y+ ++  L   G ++EA K  
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507

Query: 606 GKVLRTASKADASTCHVLV-----ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE 660
            +  R   + +A T + ++         ++ I  L +     M NR   P+      + E
Sbjct: 508 HEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVF-----MINRGCKPNETSYTILIE 562

Query: 661 RLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692
            L  EG ++EA  L+     +G ++  S E +
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLMKKSSAEQV 594

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  249 bits (637), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 150/499 (30%), Positives = 262/499 (52%), Gaps = 12/499 (2%)

Query: 144 YYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQ 203
           Y ++LEIL      + A  V   M  R I      F  +M A+    ++ +A+ +L  M 
Sbjct: 185 YNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMT 244

Query: 204 KAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIK 263
           K    PN +I  T IH L   N++ +AL+ LE M L G  P+  T+N +I G C   RI 
Sbjct: 245 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 304

Query: 264 DAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEK-----MVNDSNLFHD-- 316
           +A K+++ M ++G +PD ++Y  +M  LCK  R+   +DL  +     +V  + L H   
Sbjct: 305 EAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFV 364

Query: 317 -QGRIEEAKELVNQM-SQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNT 374
             GR+++AK +++ M +  G +PDV TY +++ G+ + G +  A ++L  M + GCKPN 
Sbjct: 365 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNV 424

Query: 375 VSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVRE 434
            SYT  ++G C  GK  EA  ++N    +   PN + ++ ++    +E ++ EA ++ RE
Sbjct: 425 YSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 484

Query: 435 MVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD 494
           M +KG  P     N LI  LC   ++  A   +++ +++G   N V + +LI  F ++G+
Sbjct: 485 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 544

Query: 495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRT 554
           ++EA  L+++M       D +TY ++I  L + G V++A  L  KML  G  P+ ++   
Sbjct: 545 IKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNI 604

Query: 555 VIHRYCQVGRVEDLLKLLEKMLSKQKCR--TAYNQVIENLCSFGYLEEAGKILGKVLRTA 612
           +I+  C+ G VE+ ++  ++M+ +        +N +I  LC  G +E+   +  K+    
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664

Query: 613 SKADASTCHVLVESYLNKG 631
              D  T + L+ S+L KG
Sbjct: 665 IPPDTVTFNTLM-SWLCKG 682

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score =  247 bits (630), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 178/630 (28%), Positives = 294/630 (46%), Gaps = 57/630 (9%)

Query: 83  RLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPI 142
           RL+ + S  +      L++++ ++ P  + ++     D + AL F +W  +  RY+H   
Sbjct: 65  RLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVY 124

Query: 143 VYYMMLEILSKT--------------KLCQG---AKRVLRLMARRGIECRPE-------- 177
            Y  +L +L                 K C     A  VL L  +   + R E        
Sbjct: 125 SYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIG 184

Query: 178 AFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERM 237
            ++ L+ + +R G +     V   M +  V PN+   N  ++       + +A +++ ++
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 244

Query: 238 QLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297
             AG+ P+  TY  LI GYC    +  A K+ +EMPLKGC  ++V+Y  ++  LC  +RI
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304

Query: 298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQ 357
            E  DL  KM +D                        C P V TYT ++   C      +
Sbjct: 305 DEAMDLFVKMKDDE-----------------------CFPTVRTYTVLIKSLCGSERKSE 341

Query: 358 AKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMH 417
           A  ++++M   G KPN  +YT  ++ LC   K  +ARE++    E+   PN ITY+ +++
Sbjct: 342 ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401

Query: 418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV 477
           G  + G + +A DVV  M  +   P     N LI+  C+   +  A   + + L +    
Sbjct: 402 GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLP 460

Query: 478 NVVNFTSLIRGFCQKGDLEEA---LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEAT 534
           +VV + SLI G C+ G+ + A   LSL++D  L    PD  TYT++ID+L K+ RVEEA 
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV---PDQWTYTSMIDSLCKSKRVEEAC 517

Query: 535 ELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ--KCRTAYNQVIENL 592
           +L   +  KG+ P VV Y  +I  YC+ G+V++   +LEKMLSK        +N +I  L
Sbjct: 518 DLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL 577

Query: 593 CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652
           C+ G L+EA  +  K+++   +   ST  +L+   L  G    AY    +M +    PD 
Sbjct: 578 CADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDA 637

Query: 653 KLCKKVSERLILEGKSEEADTLMLRFVERG 682
                  +    EG+  +A+ +M +  E G
Sbjct: 638 HTYTTFIQTYCREGRLLDAEDMMAKMRENG 667

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1

 Score =  244 bits (624), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/509 (28%), Positives = 257/509 (50%), Gaps = 31/509 (6%)

Query: 125 LQFF---YWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSY 181
           +QFF    +  + W    DP V+ +  ++L    L + A+RV   M   G+    ++ + 
Sbjct: 158 VQFFDLLVYTYKDWG--SDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNV 215

Query: 182 LMVAYSR-AGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLA 240
            +   S+   K   A+ V     +  V  N+   N  IH +    ++ +A   L  M+L 
Sbjct: 216 YLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK 275

Query: 241 GITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV 300
           G TP+V++Y+ ++ GYC    +    KLI+ M  KG  P+   Y +++G LC+       
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR------- 328

Query: 301 RDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKK 360
                             ++ EA+E  ++M + G +PD V YT +++GFC+ G++  A K
Sbjct: 329 ----------------ICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372

Query: 361 MLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLR 420
              +M+     P+ ++YTA ++G C  G  +EA ++ +    +   P+++T++ +++G  
Sbjct: 373 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432

Query: 421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVV 480
           + G + +A  V   M++ G  P  V    LI  LC+EG +D A + + E    G   N+ 
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492

Query: 481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKM 540
            + S++ G C+ G++EEA+ L+ +      + DTVTYTT++DA  K+G +++A E++ +M
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552

Query: 541 LSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--QKCRTAYNQVIENLCSFGYL 598
           L KGL PT+VT+  +++ +C  G +ED  KLL  ML+K      T +N +++  C    L
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 612

Query: 599 EEAGKILGKVLRTASKADASTCHVLVESY 627
           + A  I   +       D  T   LV+ +
Sbjct: 613 KAATAIYKDMCSRGVGPDGKTYENLVKGH 641

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 159/529 (30%), Positives = 254/529 (48%), Gaps = 45/529 (8%)

Query: 143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMY---VL 199
           V+ ++++  S+  L   A  ++ L    G    P   SY  V  +     RN  +   V 
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGF--MPGVLSYNAVLDATIRSKRNISFAENVF 193

Query: 200 SMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDL 259
             M ++ V+PN+   N  I        +  AL   ++M+  G  PNV+TYN LI GYC L
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253

Query: 260 HRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGR 319
            +I D  KL+  M LKG  P+ +SY  V+  LC+E R+KEV  ++               
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL--------------- 298

Query: 320 IEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTA 379
                    +M++ G   D VTY  ++ G+C+ G   QA  M  +M  HG  P+ ++YT+
Sbjct: 299 --------TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350

Query: 380 FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKG 439
            ++ +C  G    A E ++        PN  TY+ ++ G  ++G ++EA  V+REM   G
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410

Query: 440 FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL 499
           F P+ V  N LI   C  GKM+ A   +++   KG + +VV++++++ GFC+  D++EAL
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 500 SLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRY 559
            +  +M      PDT+TY+++I    +  R +EA +L  +ML  GL P   TY  +I+ Y
Sbjct: 471 RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530

Query: 560 CQVGRVEDLLKLLEKMLSKQKCR--TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA 617
           C  G +E  L+L  +M+ K        Y+ +I  L       EA ++L K+    S    
Sbjct: 531 CMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSD 590

Query: 618 STCHVLVESYLN---------------KGIPLLAYKVACRMFNRNLIPD 651
            T H L+E+  N               KG+   A +V   M  +N  PD
Sbjct: 591 VTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1

 Score =  239 bits (609), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 249/481 (51%), Gaps = 52/481 (10%)

Query: 188 RAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVL 247
           R+G    ++++L  M +    P++++C   I        + KA+R +E ++  G  P+V 
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVF 159

Query: 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM 307
            YN LI G+C ++RI DA +++D M  K  SPD V+Y  ++G LC   ++     ++ ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 308 VNDS------------NLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL 355
           ++D+                 +G ++EA +L+++M   G  PD+ TY  ++ G C+ G +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 356 DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVV 415
           D+A +M++ +   GC+P+ +SY   L  L + GK  E  +++     E   PN +TYS++
Sbjct: 280 DRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 416 MHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC 475
           +  L R+GK+ EA ++++ M +KG  P     + LI + CREG++D A +F++  ++ GC
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query: 476 AVNVVNFTSLIRGFCQKGDLEEALSLLD-------------------------------- 503
             ++VN+ +++   C+ G  ++AL +                                  
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query: 504 ---DMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC 560
              +M     DPD +TY ++I  L + G V+EA EL++ M S    P+VVTY  V+  +C
Sbjct: 460 MILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFC 519

Query: 561 QVGRVEDLLKLLEKMLSKQKCR---TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA 617
           +  R+ED + +LE M+    CR   T Y  +IE +   GY  EA ++   ++R  + ++ 
Sbjct: 520 KAHRIEDAINVLESMVG-NGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEY 578

Query: 618 S 618
           S
Sbjct: 579 S 579

Arabidopsis thaliana (taxid: 3702)

>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 233/433 (53%), Gaps = 21/433 (4%)

Query: 215 NTAIHVLVVGNKLAKALRFLERMQLAG----ITPNVLTYNCLIKGYCDLHRIKDAIKLID 270
           N+ ++V++      + L F + +  +     I+PN L++N +IK  C L  +  AI++  
Sbjct: 152 NSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFR 211

Query: 271 EMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDS--------NLFHD----QG 318
            MP + C PD  +Y T+M  LCKE+RI E   L+++M ++         N+  D    +G
Sbjct: 212 GMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG 271

Query: 319 RIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYT 378
            +    +LV+ M   GC+P+ VTY  +++G C  G+LD+A  +L++M    C PN V+Y 
Sbjct: 272 DLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYG 331

Query: 379 AFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKK 438
             +NGL    ++ +A  ++++ EE  +  N   YSV++ GL +EGK  EA  + R+M +K
Sbjct: 332 TLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEK 391

Query: 439 GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA 498
           G  P  V  ++L+  LCREGK + AK+ +   +  GC  N   ++SL++GF + G  EEA
Sbjct: 392 GCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEA 451

Query: 499 LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR 558
           + +  +M       +   Y+ +ID L   GRV+EA  +  KML+ G+ P  V Y ++I  
Sbjct: 452 VQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKG 511

Query: 559 YCQVGRVEDLLKLLEKMLSKQKCRT-----AYNQVIENLCSFGYLEEAGKILGKVLRTAS 613
            C +G ++  LKL  +ML +++ ++      YN +++ LC    +  A  +L  +L    
Sbjct: 512 LCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGC 571

Query: 614 KADASTCHVLVES 626
             D  TC+  + +
Sbjct: 572 DPDVITCNTFLNT 584

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1

 Score =  226 bits (575), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 243/510 (47%), Gaps = 16/510 (3%)

Query: 134 QWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLR 193
           Q R     I +  +   ++KTK  +    + + M  +GI       S ++  + R  KL 
Sbjct: 81  QSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLS 140

Query: 194 NAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLI 253
            A   +  + K    P+ +I NT ++ L +  ++++AL  ++RM   G  P ++T N L+
Sbjct: 141 YAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLV 200

Query: 254 KGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNL 313
            G C   ++ DA+ LID M   G  P++V+Y  V+  +CK  +     +L+ KM  + N+
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-EERNI 259

Query: 314 FHD-------------QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKK 360
             D              G ++ A  L N+M   G   D++TY  ++ GFC  G  D   K
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319

Query: 361 MLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLR 420
           +L+ M      PN V+++  ++     GK  EA +++    +    PN ITY+ ++ G  
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC 379

Query: 421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVV 480
           +E +L EA  +V  M+ KG  P  +  N+LI   C+  ++D   +  +E   +G   N V
Sbjct: 380 KENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439

Query: 481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKM 540
            + +L++GFCQ G LE A  L  +M   +  PD V+Y  ++D L  NG +E+A E+  K+
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499

Query: 541 LSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--QKCRTAYNQVIENLCSFGYL 598
               +   +  Y  +IH  C   +V+D   L   +  K  +    AYN +I  LC    L
Sbjct: 500 EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSL 559

Query: 599 EEAGKILGKVLRTASKADASTCHVLVESYL 628
            +A  +  K+       D  T ++L+ ++L
Sbjct: 560 SKADILFRKMTEEGHAPDELTYNILIRAHL 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/565 (25%), Positives = 261/565 (46%), Gaps = 32/565 (5%)

Query: 115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIEC 174
           LR ++   +AL FF        ++H P+ + +M+  L+        + +L+ M  +G  C
Sbjct: 50  LRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHC 109

Query: 175 RPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFL 234
             + F  ++  Y + G    A+ +   +++    P++ I N  +  L+  N++       
Sbjct: 110 SEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVY 169

Query: 235 ERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKE 294
             M+  G  PNV TYN L+K  C  +++  A KL+ EM  KGC PD VSY TV+  +C+ 
Sbjct: 170 RDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEV 229

Query: 295 KRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGE 354
             +KE R+L E             R E               P V  Y A++NG C+  +
Sbjct: 230 GLVKEGRELAE-------------RFE---------------PVVSVYNALINGLCKEHD 261

Query: 355 LDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSV 414
              A +++++M   G  PN +SY+  +N LC++G+   A   +    +    PN  T S 
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321

Query: 415 VMHGLRREGKLSEACDVVREMVKK-GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK 473
           ++ G    G   +A D+  +M++  G  P  V  N L+Q  C  G +  A          
Sbjct: 322 LVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI 381

Query: 474 GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEA 533
           GC+ N+  + SLI GF ++G L+ A+ + + M      P+ V YT +++AL ++ + +EA
Sbjct: 382 GCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEA 441

Query: 534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR---TAYNQVIE 590
             L+  M  +   P+V T+   I   C  GR++   K+  +M  + +C      YN++++
Sbjct: 442 ESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLD 501

Query: 591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650
            L     +EEA  +  ++     +  +ST + L+    N G+P +A ++  +M      P
Sbjct: 502 GLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSP 561

Query: 651 DLKLCKKVSERLILEGKSEEADTLM 675
           D      +      +GK+E A  ++
Sbjct: 562 DEITMNMIILAYCKQGKAERAAQML 586

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
225443946	733	PREDICTED: pentatricopeptide repeat-cont	0.971	0.929	0.699	0.0
147846788	733	hypothetical protein VITISV_032617 [Viti	0.971	0.929	0.695	0.0
255581238	737	pentatricopeptide repeat-containing prot	0.927	0.881	0.696	0.0
297740763	796	unnamed protein product [Vitis vinifera]	0.927	0.816	0.661	0.0
238478688	806	PPR repeat domain-containing protein [Ar	0.930	0.808	0.654	0.0
224114285	684	predicted protein [Populus trichocarpa]	0.904	0.926	0.686	0.0
12320851	802	hypothetical protein [Arabidopsis thalia	0.925	0.809	0.654	0.0
356557791	793	PREDICTED: pentatricopeptide repeat-cont	0.893	0.789	0.682	0.0
357447159	790	Pentatricopeptide repeat-containing prot	0.915	0.812	0.653	0.0
356546522	789	PREDICTED: pentatricopeptide repeat-cont	0.970	0.861	0.630	0.0

>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Vitis vinifera]

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/738 (69%), Positives = 596/738 (80%), Gaps = 57/738 (7%)

Query: 1   MGTQDSSDLSLFGSDNAEFDKSEKCDFDIFAEEVEEGEDGSD-SDDHFMVLDSFDKYRVN 59
           MG  +S DL  FGS   + D +E+      + ++EEG  G+D +DD  MVL+SF      
Sbjct: 1   MGFGESRDLGHFGSGLDDLDDNEE------SSDIEEG--GNDHNDDDLMVLNSFTGGYRQ 52

Query: 60  REEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQA 119
            E IRR    EDE RHPLVRE+CRLIELRSAW+PKLEGELR+LLRSLKPRQ+CAVL+ Q 
Sbjct: 53  TEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQT 112

Query: 120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAF 179
           DERVAL+FFYWADRQWRYRHDPIVYY MLEILSKTKLCQGAKRVLRLMA+R IE RPEAF
Sbjct: 113 DERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAF 172

Query: 180 SYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQL 239
            Y+MV+YSRAGKLRNAM VL+MMQKA + P+L ICNTAIHVLV+GN+L KA+RFLERMQ+
Sbjct: 173 GYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQI 232

Query: 240 AGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKE 299
             I PNV+TYNCLIKGYCDLHR++DA++LI EMP KGCSPDK+SYYTVMG+LCKEKRIKE
Sbjct: 233 VEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKE 292

Query: 300 VRDLMEKMVNDSNLFHDQ------------------------------------------ 317
           VR LMEKM+ DSNL  DQ                                          
Sbjct: 293 VRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIV 352

Query: 318 ------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCK 371
                 GR+++AKE+VN+M   GCIPDVVTYT+V+NG C+  ++DQAKKML+QMY HGCK
Sbjct: 353 HSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 412

Query: 372 PNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDV 431
           PNTVSYTA LNGLC NG SLEAREM+N SEE+WW PNAITYSV+MHG RREGK SEACD+
Sbjct: 413 PNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDL 472

Query: 432 VREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ 491
           VREM+KKGFFPTPVEINLLIQSLC+E K+D AK+FM++CLN GCAVNVVNFT++I GFCQ
Sbjct: 473 VREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQ 532

Query: 492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT 551
           K DLE ALSLLDDMYL  K PD VTYTTIIDAL K GR+EEAT+L MKML  GL+PT VT
Sbjct: 533 KDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVT 592

Query: 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRT 611
           YRTVIH+YC++GRVEDLLKLLEKMLS+Q+CRTAYNQVIE LCSFG LE+A K+LGKVLRT
Sbjct: 593 YRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRT 652

Query: 612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEA 671
           ASK DA+TCH+L+ESYL+KGIPL++Y VACRMFNRNLIPDLKLC+KVS++L+LEGKSEEA
Sbjct: 653 ASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEA 712

Query: 672 DTLMLRFVERGHIQPKSE 689
           D L+LRFVERG I P+ +
Sbjct: 713 DKLILRFVERGRISPQCQ 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/738 (69%), Positives = 592/738 (80%), Gaps = 57/738 (7%)

Query: 1   MGTQDSSDLSLFGSDNAEFDKSEKCDFDIFAEEVEEGEDGSD-SDDHFMVLDSFDKYRVN 59
           MG  +S DL  FGS   + D +E+      + ++EEG  G+D +DD  MVL+SF      
Sbjct: 1   MGFGESRDLGHFGSGLDDLDDNEE------SSDIEEG--GNDHNDDDLMVLNSFTGGYRQ 52

Query: 60  REEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQA 119
            E IRR    EDE RHPLVRE+CRLIELRSAW+PKLEGELR+LLRSLKPRQ+CAVL+ Q 
Sbjct: 53  TEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQT 112

Query: 120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAF 179
           DERVAL+FFYWADRQWRYRHDPIVYY MLEILSKTKLCQGAKRVLRLMA+R IE RPEAF
Sbjct: 113 DERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAF 172

Query: 180 SYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQL 239
            Y+MV+YSRAGKLRNAM  L+MMQKA + P+L ICNTAIHVLV+GN+L KA+RFLERMQ+
Sbjct: 173 GYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQI 232

Query: 240 AGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKE 299
             I PNV+TYNCLIKGYCDLHR++DA +LI EMP KGCSPDK+SYYTVMG+LCKEKRIKE
Sbjct: 233 VEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKE 292

Query: 300 VRDLMEKMVNDSNLFHDQ------------------------------------------ 317
           +R LMEKM+ DSNL  DQ                                          
Sbjct: 293 LRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIV 352

Query: 318 ------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCK 371
                 GR+++AKE+VN+M   GCIPDVVTYT+V+NG C+  ++DQAKKML+QMY HGCK
Sbjct: 353 HSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 412

Query: 372 PNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDV 431
           PNTVSYTA LNGLC NG SLEAREM+N SEE WW PNAITYSV+MHG RREGK SEACD+
Sbjct: 413 PNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDL 472

Query: 432 VREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ 491
           VREM+KKGFFPTPVEINLLIQSLC+E K+D AK+FM++CLN GCAVNVVNFT++I GFCQ
Sbjct: 473 VREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQ 532

Query: 492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT 551
           K DLE ALSLLDDMYL  K PD VTYTTIIDAL K GR+EEAT+L MKML  G +PT VT
Sbjct: 533 KDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVT 592

Query: 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRT 611
           YRTVIH+YC++GRVEDLLKLLEKMLS+Q+CRTAYNQVIE LCSFG LE+A K+LGKVLRT
Sbjct: 593 YRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRT 652

Query: 612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEA 671
           ASK DA+TCH+L+ESYL+KGIPL++Y VACRMFNRNLIPDLKLC+KVS++L+LEGKSEEA
Sbjct: 653 ASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEA 712

Query: 672 DTLMLRFVERGHIQPKSE 689
           D L+LRFVERG I P+ +
Sbjct: 713 DKLILRFVERGRISPQCQ 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/698 (69%), Positives = 569/698 (81%), Gaps = 48/698 (6%)

Query: 44  DDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLL 103
           D  FM L+S  +    +E+I R+ +EE+EFRHPLVREVCRLIE RSAW+ KLEG+LR LL
Sbjct: 39  DSVFMALNSVSRNCGQKEDIWRIEIEEEEFRHPLVREVCRLIERRSAWNAKLEGDLRRLL 98

Query: 104 RSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRV 163
           RSLKPRQ+CAVL+ Q+DER+AL FFYWA RQWRYRHDPIVYYMML++LSKTKLCQGA+RV
Sbjct: 99  RSLKPRQVCAVLQLQSDERIALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRV 158

Query: 164 LRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVV 223
           LRLM RRGI  RPEAF+++MV+YSRAGKLRNAM VL+MMQKA V PNLLICNTAIHVLV+
Sbjct: 159 LRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVM 218

Query: 224 GNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVS 283
            NKL KALRFLERMQL GITPNV+TYNCLIKGYCDL++++ A++LI EMP KGC PDKVS
Sbjct: 219 ANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVS 278

Query: 284 YYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ-------------------------- 317
           YYTVMG+LC++KRIKEVR+LMEKMV D+ LF DQ                          
Sbjct: 279 YYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRET 338

Query: 318 ----------------------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL 355
                                 GR++ AKE+VN+M   GC PDVVTYTAVVNG C+VG++
Sbjct: 339 EERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKV 398

Query: 356 DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVV 415
           ++AKKMLQQMY HGCKPNTVSYTA LNGLC +G SLEAREM+NTSEE+WWTPNAITYSVV
Sbjct: 399 EEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVV 458

Query: 416 MHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC 475
           MHGLRREGKLSEACDVVREM+ KGFFPTPVEINLLI+SLC E KM+ AKKFM+ECLN+GC
Sbjct: 459 MHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGC 518

Query: 476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATE 535
           AVN VNFT++I GFCQ  +++ ALSLLDDMYL  K PD VT+T IIDAL K GR+EEAT 
Sbjct: 519 AVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATV 578

Query: 536 LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSF 595
             MKML KGL PT VTYR VIH+YC++GRVE+L+KLL KMLS+ KCRTAYNQVIE LC+F
Sbjct: 579 YTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCRTAYNQVIEKLCNF 638

Query: 596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLC 655
           G  E A K++G VLRTAS+ DA+TCH+L+ESYL+KGIPL AYKVACRMF+RNLIPDLKLC
Sbjct: 639 GNPEAADKVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAYKVACRMFDRNLIPDLKLC 698

Query: 656 KKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQ 693
           +K+S++L+LEGK EEAD LML+FV+RG+I P S +HL+
Sbjct: 699 EKLSKKLVLEGKLEEADNLMLQFVQRGNISPDSSQHLK 736

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/738 (66%), Positives = 567/738 (76%), Gaps = 88/738 (11%)

Query: 1   MGTQDSSDLSLFGSDNAEFDKSEKCDFDIFAEEVEEGEDGSD-SDDHFMVLDSFDKYRVN 59
           MG  +S DL  FGS   + D +E+      + ++EEG  G+D +DD  MVL+SF      
Sbjct: 95  MGFGESRDLGHFGSGLDDLDDNEE------SSDIEEG--GNDHNDDDLMVLNSFTGGYRQ 146

Query: 60  REEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQA 119
            E IRR    EDE RHPLVRE+CRLIELRSAW+PKLEGELR+LLRSLKPRQ+CAVL+ Q 
Sbjct: 147 TEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQT 206

Query: 120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAF 179
           DERVAL+FFYWADRQWRYRHDPI                                RPEAF
Sbjct: 207 DERVALRFFYWADRQWRYRHDPIR-------------------------------RPEAF 235

Query: 180 SYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQL 239
            Y+MV+YSRAGKLRNAM VL+MMQKA + P+L ICNTAIHVLV+GN+L KA+RFLERMQ+
Sbjct: 236 GYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQI 295

Query: 240 AGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKE 299
             I PNV+TYNCLIKGYCDLHR++DA++LI EMP KGCSPDK+SYYTVMG+LCKEKRIKE
Sbjct: 296 VEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKE 355

Query: 300 VRDLMEKMVNDSNLFHDQ------------------------------------------ 317
           VR LMEKM+ DSNL  DQ                                          
Sbjct: 356 VRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIV 415

Query: 318 ------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCK 371
                 GR+++AKE+VN+M   GCIPDVVTYT+V+NG C+  ++DQAKKML+QMY HGCK
Sbjct: 416 HSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 475

Query: 372 PNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDV 431
           PNTVSYTA LNGLC NG SLEAREM+N SEE+WW PNAITYSV+MHG RREGK SEACD+
Sbjct: 476 PNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDL 535

Query: 432 VREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ 491
           VREM+KKGFFPTPVEINLLIQSLC+E K+D AK+FM++CLN GCAVNVVNFT++I GFCQ
Sbjct: 536 VREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQ 595

Query: 492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT 551
           K DLE ALSLLDDMYL  K PD VTYTTIIDAL K GR+EEAT+L MKML  GL+PT VT
Sbjct: 596 KDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVT 655

Query: 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRT 611
           YRTVIH+YC++GRVEDLLKLLEKMLS+Q+CRTAYNQVIE LCSFG LE+A K+LGKVLRT
Sbjct: 656 YRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRT 715

Query: 612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEA 671
           ASK DA+TCH+L+ESYL+KGIPL++Y VACRMFNRNLIPDLKLC+KVS++L+LEGKSEEA
Sbjct: 716 ASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEA 775

Query: 672 DTLMLRFVERGHIQPKSE 689
           D L+LRFVERG I P+ +
Sbjct: 776 DKLILRFVERGRISPQCQ 793

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana] gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/704 (65%), Positives = 551/704 (78%), Gaps = 52/704 (7%)

Query: 34  VEEGEDGSDSDDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSP 93
           V  G++  D +D F VL S  +   +REE  R  +EEDE RHPLVREV RLI LRS+W+P
Sbjct: 103 VTSGDELDDDNDGFAVLKSIPQ---SREEAGRFDVEEDESRHPLVREVGRLIGLRSSWNP 159

Query: 94  KLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSK 153
           K EG++RNLLRSLKP Q+CAVLRSQ DERVAL+FFYWADRQWRYRHDP+VYY MLE+LSK
Sbjct: 160 KHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSK 219

Query: 154 TKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLI 213
           TKLCQG++RVL LM RRGI   PEAFS +MV+YSRAG+LR+A+ VL++MQ+A V PNLLI
Sbjct: 220 TKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLI 279

Query: 214 CNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMP 273
           CNT I V V  N+L KALRFLERMQ+ GI PNV+TYNC+I+GYCDLHR+++AI+L+++M 
Sbjct: 280 CNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMH 339

Query: 274 LKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ---------------- 317
            KGC PDKVSYYT+MGYLCKEKRI EVRDLM+KM  +  L  DQ                
Sbjct: 340 SKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHA 399

Query: 318 --------------------------------GRIEEAKELVNQMSQMG-CIPDVVTYTA 344
                                           GR+ EAK+L+N+M   G C PDVVTYTA
Sbjct: 400 DEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTA 459

Query: 345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEW 404
           VVNGFCR+GE+D+AKK+LQ M+ HG KPNTVSYTA LNG+C  GKSLEAREM+N SEE W
Sbjct: 460 VVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHW 519

Query: 405 WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAK 464
           W+PN+ITYSV+MHGLRREGKLSEACDVVREMV KGFFP PVEINLL+QSLCR+G+   A+
Sbjct: 520 WSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEAR 579

Query: 465 KFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL 524
           KFM+ECLNKGCA+NVVNFT++I GFCQ  +L+ ALS+LDDMYL  K  D  TYTT++D L
Sbjct: 580 KFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTL 639

Query: 525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA 584
            K GR+ EATELM KML KG+ PT VTYRTVIHRYCQ+G+V+DL+ +LEKM+S+QKCRT 
Sbjct: 640 GKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTI 699

Query: 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMF 644
           YNQVIE LC  G LEEA  +LGKVLRTAS++DA TC+ L+E YL KG+PL AYKVACRMF
Sbjct: 700 YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMF 759

Query: 645 NRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS 688
           NRNLIPD+K+C+K+S+RL+L+GK +EAD LMLR VERGHI P+S
Sbjct: 760 NRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQS 803

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa] gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/683 (68%), Positives = 548/683 (80%), Gaps = 49/683 (7%)

Query: 61  EEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQAD 120
           E+ RR+ + EDEFRHPLVRE+CRLIE RSAW+ KLEG++R+LLR LKPR +CAVL SQ+D
Sbjct: 3   EDWRRIEIHEDEFRHPLVREICRLIECRSAWNHKLEGKMRHLLRGLKPRLVCAVLLSQSD 62

Query: 121 ERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFS 180
           ERVAL FF+W+DRQWRYRHDPIVY +ML++LSKTKLCQGA+RVLRLM RRGI+  P+ F 
Sbjct: 63  ERVALDFFFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFC 122

Query: 181 YLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLA 240
            +MV+YSRAGKLRNAM VL+MMQKA + PNLL+CNTAIHVLV+ N L KALRFLERMQL 
Sbjct: 123 CVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLL 182

Query: 241 GITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV 300
           GI PNV+TYNCLIKGYCDLHR++DA++LI EMPLKGCSPDKVSYYTVMG+LCK +RI+EV
Sbjct: 183 GIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREV 242

Query: 301 RDLMEKMVNDSNLFHDQ------------------------------------------- 317
            D++EKM  D+ L  DQ                                           
Sbjct: 243 MDVIEKM-EDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVD 301

Query: 318 -----GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP 372
                GR+++AKE+VN+M   GCIPDVVTYTA++NGF + GE+ QA+KMLQQMY HGCKP
Sbjct: 302 SYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKP 361

Query: 373 NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVV 432
           NTVSYTAFL GLC  G S EAREM+  SEE+WWTPNAITYSVVMHG RREGKLS+ACDVV
Sbjct: 362 NTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVV 421

Query: 433 REMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK 492
           REM+ KGFFPTPVEINLL+QSLCR G++D AKKFM+ECLN GCAVN VNFT++I  FCQ+
Sbjct: 422 REMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQ 481

Query: 493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY 552
            D+E ALSLLDDMYL  K PD VTYTTIIDAL K GR+EEATEL +KML KG+ PT VTY
Sbjct: 482 DDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTY 541

Query: 553 RTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612
           RTVIHRY Q+GRVEDLL LL+KML++Q+CRTA+NQVIE LC+FG LE A K+LGKVLRTA
Sbjct: 542 RTVIHRYGQIGRVEDLLNLLDKMLTRQECRTAFNQVIEKLCTFGNLEAADKLLGKVLRTA 601

Query: 613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEAD 672
           S+ DA+TCHVL+ESYL KGIPL AYKVACRMF+R+LIPDLKLC+KV ++L+ EGKSEEAD
Sbjct: 602 SRIDANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEAD 661

Query: 673 TLMLRFVERGHIQPKSEEHLQRQ 695
            L LRFVERG+I      H Q +
Sbjct: 662 NLFLRFVERGNISSHCLRHSQTE 684

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/703 (65%), Positives = 550/703 (78%), Gaps = 54/703 (7%)

Query: 34  VEEGEDGSDSDDHFMVLDSFDKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSP 93
           V  G++  D +D F VL S  +   +REE  R  +EEDE RHPLVREV RLI LRS+W+P
Sbjct: 103 VTSGDELDDDNDGFAVLKSIPQ---SREEAGRFDVEEDESRHPLVREVGRLIGLRSSWNP 159

Query: 94  KLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSK 153
           K EG++RNLLRSLKP Q+CAVLRSQ DERVAL+FFYWADRQWRYRHDP+VYY MLE+LSK
Sbjct: 160 KHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSK 219

Query: 154 TKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLI 213
           TKLCQG++RVL LM RRGI   PEAFS +MV+YSRAG+LR+A+ VL++MQ+A V PNLLI
Sbjct: 220 TKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLI 279

Query: 214 CNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMP 273
           CNT I V V  N+L KALRFLERMQ+ GI PNV+TYNC+I+GYCDLHR+++AI+L+++M 
Sbjct: 280 CNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMH 339

Query: 274 LKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ---------------- 317
            KGC PDKVSYYT+MGYLCKEKRI EVRDLM+KM  +  L  DQ                
Sbjct: 340 SKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHA 399

Query: 318 --------------------------------GRIEEAKELVNQMSQMGCIPDVVTYTAV 345
                                           GR+ EAK+L+N+M    C PDVVTYTAV
Sbjct: 400 DEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMD---CPPDVVTYTAV 456

Query: 346 VNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWW 405
           VNGFCR+GE+D+AKK+LQ M+ HG KPNTVSYTA LNG+C  GKSLEAREM+N SEE WW
Sbjct: 457 VNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWW 516

Query: 406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKK 465
           +PN+ITYSV+MHGLRREGKLSEACDVVREMV KGFFP PVEINLL+QSLCR+G+   A+K
Sbjct: 517 SPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARK 576

Query: 466 FMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS 525
           FM+ECLNKGCA+NVVNFT++I GFCQ  +L+ ALS+LDDMYL  K  D  TYTT++D L 
Sbjct: 577 FMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLG 636

Query: 526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAY 585
           K GR+ EATELM KML KG+ PT VTYRTVIHRYCQ+G+V+DL+ +LEKM+S+QKCRT Y
Sbjct: 637 KKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTIY 696

Query: 586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645
           NQVIE LC  G LEEA  +LGKVLRTAS++DA TC+ L+E YL KG+PL AYKVACRMFN
Sbjct: 697 NQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFN 756

Query: 646 RNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS 688
           RNLIPD+K+C+K+S+RL+L+GK +EAD LMLR VERGHI P+S
Sbjct: 757 RNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQS 799

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like [Glycine max]

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/675 (68%), Positives = 534/675 (79%), Gaps = 49/675 (7%)

Query: 61  EEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQAD 120
           + I RV + + EFRHP+VREVCRLI L SAW+P  EG LR+LLRSLKP  +CAVLRSQAD
Sbjct: 120 QSIARVEIGDSEFRHPVVREVCRLITLSSAWNPNFEGRLRHLLRSLKPPLVCAVLRSQAD 179

Query: 121 ERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFS 180
           ERVAL FFYWADRQWRY H P+VYY ML++LSKTKLCQGA+RVLRLM RRGIEC PEAF 
Sbjct: 180 ERVALNFFYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFG 239

Query: 181 YLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLA 240
           Y+MV+YSRAGKLRNA+ VL++MQKA V P+L ICNT I+VLV G KL KAL+FLERMQ+ 
Sbjct: 240 YVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVT 299

Query: 241 GITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV 300
           GI P+++TYN LIKGYCDL+RI+DA++LI  +P KGC PDKVSYYTVMG+LCKEK+I+EV
Sbjct: 300 GIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEV 359

Query: 301 RDLMEKMVNDSNLFHDQ------------------------------------------- 317
           + LMEKMV +SNL  DQ                                           
Sbjct: 360 KCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVH 419

Query: 318 -----GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP 372
                GR++EAK LV  M   GC PDVVTYTA+V+GFCR+G +D+AKK+LQQMY HGCKP
Sbjct: 420 SFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKP 479

Query: 373 NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVV 432
           NTVSYTA LNGLCH+GKSLEAREMIN SEE WWTPNAITY  VMHGLRREGKLSEACD+ 
Sbjct: 480 NTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLT 539

Query: 433 REMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK 492
           REMV+KGFFPTPVEINLLIQSLC+  K+  AKK+++ECLNKGCA+NVVNFT++I GFCQ 
Sbjct: 540 REMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQI 599

Query: 493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY 552
           GD+E ALS+LDDMYL  K PD VTYT + DAL K GR++EA EL++KMLSKGL PT VTY
Sbjct: 600 GDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTY 659

Query: 553 RTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612
           R+VIHRY Q GRV+D+L LLEKML +Q  RT YNQVIE LC FG LEEA K+LGKVLRTA
Sbjct: 660 RSVIHRYSQWGRVDDMLNLLEKMLKRQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTA 719

Query: 613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEAD 672
           SK DA+TCHVL+ESYL KG+ + AYKVACRMF RNL PDLKLC+KVS++L+L+GK  EAD
Sbjct: 720 SKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEAD 779

Query: 673 TLMLRFVERGHIQPK 687
            LMLRFVERG IQ K
Sbjct: 780 NLMLRFVERG-IQQK 793

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/692 (65%), Positives = 538/692 (77%), Gaps = 50/692 (7%)

Query: 41  SDSDDHFMVLDSFDKYRVN--REEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGE 98
           SD D+ F  + SFD    N  RE I R  ++E EFRHP+VREVCRLI LRS W+PK E  
Sbjct: 95  SDIDESFEFISSFDGNGSNKQRENIARFEIDESEFRHPIVREVCRLISLRSNWNPKFEEN 154

Query: 99  LRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQ 158
           LR+LLRSL PR +CAVLRSQ DER+AL FFYWADRQWRYRHD IVYY ML+ILSKT+LCQ
Sbjct: 155 LRHLLRSLNPRLVCAVLRSQDDERIALDFFYWADRQWRYRHDAIVYYTMLDILSKTRLCQ 214

Query: 159 GAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI 218
           GA+R+LRLM RRGIE  PEAFSY+MV+YSRAG LRNA+ +L++MQKA V P+L ICNTAI
Sbjct: 215 GARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAI 274

Query: 219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCS 278
           +VLV GNKL KALRFLERM++AGI P++++YNCLIKGYCD+HRI DA++LI EMP KGC 
Sbjct: 275 YVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCP 334

Query: 279 PDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ--------------------- 317
           PDKVSYYTVM +LCK+++++EV+ LME MV +SNL  DQ                     
Sbjct: 335 PDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALV 394

Query: 318 ---------------------------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFC 350
                                        I++AK LV  M   GC PDVVTYTA+++GFC
Sbjct: 395 FLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFC 454

Query: 351 RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI 410
           RVG++D+AKKMLQQMY HGCKPNTV+YT  LNGLCHNGKSLEAREMIN SEE WWTPNAI
Sbjct: 455 RVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAI 514

Query: 411 TYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQEC 470
           TYS VMHGLRREGKLSEACD+ REM++KGF P PV+INLLIQSLCR   + GAKK+++EC
Sbjct: 515 TYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEEC 574

Query: 471 LNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRV 530
           L+KGCAVNVVNFTS+I GFCQ GDL+ ALS+L+DMYL  K PD +TYTT+ DAL K  R+
Sbjct: 575 LHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRL 634

Query: 531 EEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIE 590
           +EA+EL++KML KG+ PT VTYR VIHR+CQ GRV+D++KLLEKM+++Q  +T YNQVIE
Sbjct: 635 DEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMIARQPFKTVYNQVIE 694

Query: 591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650
            LC FG  EEA K+LGKVLRTASK DA TCH+L+ESYL  G  L AYKVAC+MF RNLIP
Sbjct: 695 KLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLIDGNALSAYKVACQMFRRNLIP 754

Query: 651 DLKLCKKVSERLILEGKSEEADTLMLRFVERG 682
           DLKLC+KV+++L+L+G   EAD LMLRFVERG
Sbjct: 755 DLKLCEKVTKKLVLDGMPAEADDLMLRFVERG 786

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max]

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/742 (63%), Positives = 554/742 (74%), Gaps = 62/742 (8%)

Query: 4   QDSSDLSLFGSDNAEFDK-----SEKCDFDI-FAEEVEEGEDGSDSDDHFMVLDSF---- 53
           Q     S FG+ N +  K      E   F    ++  EE E  SD D+    ++SF    
Sbjct: 52  QTEGKYSNFGNFNDDLGKVGPGFQESLSFAASVSDGAEEEEGSSDDDESLEFINSFHGSN 111

Query: 54  DKYRVNREEIRRVVLEEDEFRHPLVREVCRLIELRSAWSPKLEGELRNLLRSLKPRQICA 113
           DK   N   I  + +++ EFRHP+VREVCRLI L SAW+P  EG LR+LLRSLKP  +CA
Sbjct: 112 DKQTQN---IASIEIDDSEFRHPVVREVCRLITLSSAWNPNFEGRLRHLLRSLKPSLVCA 168

Query: 114 VLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIE 173
           VLRSQADERVAL FFYWADRQWRY H P+VYY +L++LSKTKLCQGA+RVLRLM RRGIE
Sbjct: 169 VLRSQADERVALNFFYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRLMTRRGIE 228

Query: 174 CRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRF 233
             PEAF  +MV+YSRAGKLRNA+ VL++MQKA V PNL ICNT I+VLV G KL KALRF
Sbjct: 229 LSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRF 288

Query: 234 LERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCK 293
           LERMQ+ GI P+++TYN LIKGYCDL+RI+DA++LI  +P KGC PDKVSYYTVMG+LCK
Sbjct: 289 LERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCK 348

Query: 294 EKRIKEVRDLMEKMVNDSNLFHDQ------------------------------------ 317
           EK+I++V+ LMEKMV DSNL  DQ                                    
Sbjct: 349 EKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKV 408

Query: 318 ------------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQM 365
                       GR++EAK LV  M    C PDVVTYTA+V+GFCR+G +D+AKKMLQQM
Sbjct: 409 GYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQM 468

Query: 366 YHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKL 425
           Y HGCKPNTVSYTA LNGLCH+GKSLEAREMIN SEE WWTPNAITY VVMHG RREGKL
Sbjct: 469 YKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKL 528

Query: 426 SEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL 485
           SEACD+ REMV+KGFFPTPVEINLLIQSLC+  K+  AKK+++ECLNKGCA+NVVNFT++
Sbjct: 529 SEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTV 588

Query: 486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL 545
           I GFCQ GD+E ALS+L+DMYL  K PD VTYT + DAL K GR++EA EL++KMLSKGL
Sbjct: 589 IHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGL 648

Query: 546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKIL 605
            PT VT+R+VIHRYCQ GRV+D+L LL++M+ ++  RT YN VIE LC FG LEEA K+L
Sbjct: 649 DPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRKPFRTIYNHVIEKLCDFGNLEEAEKLL 708

Query: 606 GKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE 665
           GKVLRTASK DA+TCHVL+ES L KG+ L AYKVAC+MF RNL PDLKLC+KV+++L+L+
Sbjct: 709 GKVLRTASKLDANTCHVLMESCLKKGVALSAYKVACQMFRRNLTPDLKLCEKVTKKLVLD 768

Query: 666 GKSEEADTLMLRFVERGHIQPK 687
           G   EAD LMLRFVERG IQ K
Sbjct: 769 GNLVEADKLMLRFVERG-IQQK 789

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
TAIR|locus:2009787	806	AT1G30290 "AT1G30290" [Arabido	0.790	0.687	0.558	1e-162
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.814	0.757	0.285	6.2e-62
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.737	0.864	0.283	1e-61
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.643	0.603	0.300	1.3e-61
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.828	0.795	0.270	1.5e-60
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.650	0.757	0.275	2.7e-59
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.835	0.640	0.277	3.5e-58
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.741	0.807	0.272	8.4e-58
TAIR|locus:2119747	660	EMB1025 "embryo defective 1025	0.592	0.628	0.312	5.9e-57
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.721	0.817	0.285	4.8e-55

TAIR|locus:2009787 AT1G30290 "AT1G30290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1584 (562.7 bits), Expect = 1.0e-162, P = 1.0e-162
 Identities = 319/571 (55%), Positives = 409/571 (71%)

Query:   133 RQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKL 192
             R+  YR  P  +  ++   S+    + A +VL LM R G+E      +  +  + RA +L
Sbjct:   235 RRGIYR-TPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRL 293

Query:   193 RNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCL 252
               A+  L  MQ   + PN++  N  I      +++ +A+  LE M   G  P+ ++Y  +
Sbjct:   294 EKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTI 353

Query:   253 IKGY-CDLHRIKDAIKLIDEMPLK-GCSPDKVSYYTVMGYLCKEKRIKE----VRDLMEK 306
             + GY C   RI +   L+ +M  + G  PD+V+Y T++  L K     E    ++D  EK
Sbjct:   354 M-GYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEK 412

Query:   307 -----MVNDSNLFH---DQGRIEEAKELVNQMSQMG-CIPDVVTYTAVVNGFCRVGELDQ 357
                   +  S + H    +GR+ EAK+L+N+M   G C PDVVTYTAVVNGFCR+GE+D+
Sbjct:   413 GFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDK 472

Query:   358 AKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMH 417
             AKK+LQ M+ HG KPNTVSYTA LNG+C  GKSLEAREM+N SEE WW+PN+ITYSV+MH
Sbjct:   473 AKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMH 532

Query:   418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV 477
             GLRREGKLSEACDVVREMV KGFFP PVEINLL+QSLCR+G+   A+KFM+ECLNKGCA+
Sbjct:   533 GLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI 592

Query:   478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM 537
             NVVNFT++I GFCQ  +L+ ALS+LDDMYL  K  D  TYTT++D L K GR+ EATELM
Sbjct:   593 NVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELM 652

Query:   538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGY 597
              KML KG+ PT VTYRTVIHRYCQ+G+V+DL+ +LEKM+S+QKCRT YNQVIE LC  G 
Sbjct:   653 KKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTIYNQVIEKLCVLGK 712

Query:   598 LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKK 657
             LEEA  +LGKVLRTAS++DA TC+ L+E YL KG+PL AYKVACRMFNRNLIPD+K+C+K
Sbjct:   713 LEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEK 772

Query:   658 VSERLILEGKSEEADTLMLRFVERGHIQPKS 688
             +S+RL+L+GK +EAD LMLR VERGHI P+S
Sbjct:   773 LSKRLVLKGKVDEADKLMLRLVERGHISPQS 803

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 168/589 (28%), Positives = 288/589 (48%)

Query:   115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIEC 174
             LRSQ D+  AL+ F  A ++  +  +P +Y  +L  L ++      K++L  M     E 
Sbjct:    57 LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116

Query:   175 RPEAFSYLMVAYSRAGKLRNAMYVLS-MMQKAAVAPNLLICNTAIHVLVVGNKLAKALRF 233
                 F  L+ +Y++       + V+  M+ +  + P+    N  +++LV GN L      
Sbjct:   117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176

Query:   234 LERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVM-GYLC 292
               +M + GI P+V T+N LIK  C  H+++ AI ++++MP  G  PD+ ++ TVM GY+ 
Sbjct:   177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYI- 235

Query:   293 KEKRIKEVRDLMEKMVND----SNL--------FHDQGRIEEAKELVNQMS-QMGCIPDV 339
             +E  +     + E+MV      SN+        F  +GR+E+A   + +MS Q G  PD 
Sbjct:   236 EEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQ 295

Query:   340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINT 399
              T+  +VNG C+ G +  A +++  M   G  P+  +Y + ++GLC  G+  EA E+++ 
Sbjct:   296 YTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQ 355

Query:   400 SEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK 459
                   +PN +TY+ ++  L +E ++ EA ++ R +  KG  P     N LIQ LC    
Sbjct:   356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query:   460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT 519
                A +  +E  +KGC  +   +  LI   C KG L+EAL++L  M L       +TY T
Sbjct:   416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475

Query:   520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK- 578
             +ID   K  +  EA E+  +M   G+    VTY T+I   C+  RVED  +L+++M+ + 
Sbjct:   476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535

Query:   579 QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY 637
             QK  +  YN ++ + C  G +++A  I+  +     + D  T   L+      G   +A 
Sbjct:   536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query:   638 KVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP 686
             K+   +  + +         V + L  + K+ EA  L    +E+    P
Sbjct:   596 KLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 151/533 (28%), Positives = 271/533 (50%)

Query:   171 GIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKA 230
             G+  R + F  L   YS +    N  Y  S+    A+    +  N  +  +V   +L + 
Sbjct:    67 GLNGRAQKFETLSSGYSNSNG--NGHYS-SVNSSFALED--VESNNHLRQMVRTGELEEG 121

Query:   231 LRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGY 290
              +FLE M   G  P+++    LI+G+C L + + A K+++ +   G  PD ++Y  ++  
Sbjct:   122 FKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISG 181

Query:   291 LCKEKRIKEVRDLMEKM------VNDSNLFH---DQGRIEEAKELVNQMSQMGCIPDVVT 341
              CK   I     ++++M      V  + +     D G++++A E++++M Q  C PDV+T
Sbjct:   182 YCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241

Query:   342 YTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSE 401
             YT ++   CR   +  A K+L +M   GC P+ V+Y   +NG+C  G+  EA + +N   
Sbjct:   242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301

Query:   402 EEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMD 461
                  PN IT+++++  +   G+  +A  ++ +M++KGF P+ V  N+LI  LCR+G + 
Sbjct:   302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361

Query:   462 GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTII 521
              A   +++    GC  N +++  L+ GFC++  ++ A+  L+ M      PD VTY T++
Sbjct:   362 RAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421

Query:   522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-K 580
              AL K+G+VE+A E++ ++ SKG  P ++TY TVI    + G+    +KLL++M +K  K
Sbjct:   422 TALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLK 481

Query:   581 CRT-AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKV 639
               T  Y+ ++  L   G ++EA K   +  R   + +A T + ++           A   
Sbjct:   482 PDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDF 541

Query:   640 ACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692
                M NR   P+      + E L  EG ++EA  L+     +G ++  S E +
Sbjct:   542 LVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQV 594

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 140/466 (30%), Positives = 240/466 (51%)

Query:   179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNK-LAKALRFLERM 237
             F  ++ +YSR   +  A+ ++ + Q     P +L  N  +   +   + ++ A    + M
Sbjct:   137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query:   238 QLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297
               + ++PNV TYN LI+G+C    I  A+ L D+M  KGC P+ V+Y T++   CK ++I
Sbjct:   197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256

Query:   298 KEVRDLMEKMVN---DSNLFH---------DQGRIEEAKELVNQMSQMGCIPDVVTYTAV 345
              +   L+  M     + NL            +GR++E   ++ +M++ G   D VTY  +
Sbjct:   257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316

Query:   346 VNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWW 405
             + G+C+ G   QA  M  +M  HG  P+ ++YT+ ++ +C  G    A E ++       
Sbjct:   317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376

Query:   406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKK 465
              PN  TY+ ++ G  ++G ++EA  V+REM   GF P+ V  N LI   C  GKM+ A  
Sbjct:   377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436

Query:   466 FMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS 525
              +++   KG + +VV++++++ GFC+  D++EAL +  +M      PDT+TY+++I    
Sbjct:   437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496

Query:   526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR--T 583
             +  R +EA +L  +ML  GL P   TY  +I+ YC  G +E  L+L  +M+ K       
Sbjct:   497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556

Query:   584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629
              Y+ +I  L       EA ++L K+    S     T H L+E+  N
Sbjct:   557 TYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSN 602

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 164/606 (27%), Positives = 286/606 (47%)

Query:    99 LRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQ 158
             LRN    + P Q+  +L    +   +++ F W   Q  YRH   VY +++  L      +
Sbjct:    69 LRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFK 128

Query:   159 GAKRVLRLMARRGIECRPEAFSYLMVAYSRAG-KLRNAMYVLSMMQKAAVAPNLLICNTA 217
                R+L  M   GI  +   F  +M  Y +AG   +    +L M    +  P     N  
Sbjct:   129 TIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVV 188

Query:   218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGC 277
             + +LV GN    A      M    I P + T+  ++K +C ++ I  A+ L+ +M   GC
Sbjct:   189 LEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGC 248

Query:   278 SPDKVSYYTVMGYLCKEKRIKEVRDLMEKM-----VNDSNLFHDQ--G-----RIEEAKE 325
              P+ V Y T++  L K  R+ E   L+E+M     V D+  F+D   G     RI EA +
Sbjct:   249 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAK 308

Query:   326 LVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLC 385
             +VN+M   G  PD +TY  ++NG C++G +D AK     +++   KP  V +   ++G  
Sbjct:   309 MVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK----DLFYRIPKPEIVIFNTLIHGFV 364

Query:   386 HNGKSLEAREMINTSEEEWW-TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTP 444
              +G+  +A+ +++     +   P+  TY+ +++G  +EG +  A +V+ +M  KG  P  
Sbjct:   365 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNV 424

Query:   445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDD 504
                 +L+   C+ GK+D A   + E    G   N V F  LI  FC++  + EA+ +  +
Sbjct:   425 YSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 484

Query:   505 MYL--CKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV 562
             M    CK  PD  T+ ++I  L +   ++ A  L+  M+S+G+V   VTY T+I+ + + 
Sbjct:   485 MPRKGCK--PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRR 542

Query:   563 GRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTC 620
             G +++  KL+ +M+ +        YN +I+ LC  G +++A  +  K+LR        +C
Sbjct:   543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISC 602

Query:   621 HVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVE 680
             ++L+      G+   A +    M  R   PD+     +   L   G+ E+  T+  +   
Sbjct:   603 NILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQA 662

Query:   681 RGHIQP 686
              G I P
Sbjct:   663 EG-IPP 667

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 131/476 (27%), Positives = 254/476 (53%)

Query:   188 RAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVL 247
             R+G    ++++L  M +    P++++C   I        + KA+R +E ++  G  P+V 
Sbjct:   101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVF 159

Query:   248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM 307
              YN LI G+C ++RI DA +++D M  K  SPD V+Y  ++G LC   ++     ++ ++
Sbjct:   160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query:   308 VNDS--------NLFHD----QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL 355
             ++D+         +  +    +G ++EA +L+++M   G  PD+ TY  ++ G C+ G +
Sbjct:   220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query:   356 DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVV 415
             D+A +M++ +   GC+P+ +SY   L  L + GK  E  +++     E   PN +TYS++
Sbjct:   280 DRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query:   416 MHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC 475
             +  L R+GK+ EA ++++ M +KG  P     + LI + CREG++D A +F++  ++ GC
Sbjct:   340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query:   476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATE 535
               ++VN+ +++   C+ G  ++AL +   +      P++ +Y T+  AL  +G    A  
Sbjct:   400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query:   536 LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ--KCRTAYNQVIENLC 593
             ++++M+S G+ P  +TY ++I   C+ G V++  +LL  M S +       YN V+   C
Sbjct:   460 MILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFC 519

Query:   594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI 649
                 +E+A  +L  ++    + + +T  VL+E     GI    Y+        +L+
Sbjct:   520 KAHRIEDAINVLESMVGNGCRPNETTYTVLIE-----GIGFAGYRAEAMELANDLV 570

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 3.5e-58, P = 3.5e-58
 Identities = 173/624 (27%), Positives = 303/624 (48%)

Query:    83 RLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPI 142
             RL+ + S  +      L++++ ++ P  + ++     D + AL F +W  +  RY+H   
Sbjct:    65 RLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVY 124

Query:   143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMM 202
              Y  +L +L       G    +RL+  +  +   +A  Y++    +  K         + 
Sbjct:   125 SYASLLTLLINNGYV-GVVFKIRLLMIKSCDSVGDAL-YVLDLCRKMNKDER----FELK 178

Query:   203 QKAAVAP-NLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR 261
              K  +   N L+ + A   LV  +++ +   ++E ++   + PN+ TYN ++ GYC L  
Sbjct:   179 YKLIIGCYNTLLNSLARFGLV--DEMKQV--YMEMLE-DKVCPNIYTYNKMVNGYCKLGN 233

Query:   262 IKDAIKLIDEMPLKGCSPDKVSYYT-VMGYLCKEKRIKEVRDLMEKMV------ND---S 311
             +++A + + ++   G  PD  +Y + +MGY C+ K +     +  +M       N+   +
Sbjct:   234 VEEANQYVSKIVEAGLDPDFFTYTSLIMGY-CQRKDLDSAFKVFNEMPLKGCRRNEVAYT 292

Query:   312 NLFHD---QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH 368
             +L H      RI+EA +L  +M    C P V TYT ++   C      +A  ++++M   
Sbjct:   293 HLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET 352

Query:   369 GCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEA 428
             G KPN  +YT  ++ LC   K  +ARE++    E+   PN ITY+ +++G  + G + +A
Sbjct:   353 GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDA 412

Query:   429 CDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRG 488
              DVV  M  +   P     N LI+  C+   +  A   + + L +    +VV + SLI G
Sbjct:   413 VDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDG 471

Query:   489 FCQKGDLEEA---LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL 545
              C+ G+ + A   LSL++D  L    PD  TYT++ID+L K+ RVEEA +L   +  KG+
Sbjct:   472 QCRSGNFDSAYRLLSLMNDRGLV---PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528

Query:   546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAG 602
              P VV Y  +I  YC+ G+V++   +LEKMLSK  C      +N +I  LC+ G L+EA 
Sbjct:   529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN-CLPNSLTFNALIHGLCADGKLKEAT 587

Query:   603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL 662
              +  K+++   +   ST  +L+   L  G    AY    +M +    PD        +  
Sbjct:   588 LLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647

Query:   663 ILEGKSEEADTLMLRFVERGHIQP 686
               EG+  +A+ +M +  E G + P
Sbjct:   648 CREGRLLDAEDMMAKMRENG-VSP 670

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 146/536 (27%), Positives = 251/536 (46%)

Query:   142 IVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSM 201
             I +  +   ++KTK  +    + + M  +GI       S ++  + R  KL  A   +  
Sbjct:    89 IDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGK 148

Query:   202 MQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR 261
             + K    P+ +I NT ++ L +  ++++AL  ++RM   G  P ++T N L+ G C   +
Sbjct:   149 IMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGK 208

Query:   262 IKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHD----- 316
             + DA+ LID M   G  P++V+Y  V+  +CK  +     +L+ KM  + N+  D     
Sbjct:   209 VSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-EERNIKLDAVKYS 267

Query:   317 --------QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH 368
                      G ++ A  L N+M   G   D++TY  ++ GFC  G  D   K+L+ M   
Sbjct:   268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327

Query:   369 GCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEA 428
                PN V+++  ++     GK  EA +++    +    PN ITY+ ++ G  +E +L EA
Sbjct:   328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387

Query:   429 CDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRG 488
               +V  M+ KG  P  +  N+LI   C+  ++D   +  +E   +G   N V + +L++G
Sbjct:   388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447

Query:   489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT 548
             FCQ G LE A  L  +M   +  PD V+Y  ++D L  NG +E+A E+  K+    +   
Sbjct:   448 FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507

Query:   549 VVTYRTVIHRYCQVGRVEDLLKLLEKM-LSKQKCRT-AYNQVIENLCSFGYLEEAGKILG 606
             +  Y  +IH  C   +V+D   L   + L   K    AYN +I  LC    L +A  +  
Sbjct:   508 IGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFR 567

Query:   607 KVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL 662
             K+       D  T ++L+ ++L       A ++   M +     D+   K V   L
Sbjct:   568 KMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML 623

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 137/438 (31%), Positives = 234/438 (53%)

Query:   215 NTAIHVLVVGNKLAKALRFLE-----RMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLI 269
             N+ ++V++      + L F +      M +  I+PN L++N +IK  C L  +  AI++ 
Sbjct:   152 NSVLNVIINEGLYHRGLEFYDYVVNSNMNM-NISPNGLSFNLVIKALCKLRFVDRAIEVF 210

Query:   270 DEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDS--------NLFHD----Q 317
               MP + C PD  +Y T+M  LCKE+RI E   L+++M ++         N+  D    +
Sbjct:   211 RGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKK 270

Query:   318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSY 377
             G +    +LV+ M   GC+P+ VTY  +++G C  G+LD+A  +L++M    C PN V+Y
Sbjct:   271 GDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTY 330

Query:   378 TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVK 437
                +NGL    ++ +A  ++++ EE  +  N   YSV++ GL +EGK  EA  + R+M +
Sbjct:   331 GTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAE 390

Query:   438 KGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEE 497
             KG  P  V  ++L+  LCREGK + AK+ +   +  GC  N   ++SL++GF + G  EE
Sbjct:   391 KGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEE 450

Query:   498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557
             A+ +  +M       +   Y+ +ID L   GRV+EA  +  KML+ G+ P  V Y ++I 
Sbjct:   451 AVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIK 510

Query:   558 RYCQVGRVEDLLKLLEKMLSKQKCRT-----AYNQVIENLCSFGYLEEAGKILGKVLRTA 612
               C +G ++  LKL  +ML +++ ++      YN +++ LC    +  A  +L  +L   
Sbjct:   511 GLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRG 570

Query:   613 SKADASTCHVLVESYLNK 630
                D  TC+  + +   K
Sbjct:   571 CDPDVITCNTFLNTLSEK 588

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 151/529 (28%), Positives = 248/529 (46%)

Query:   141 PIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLS 200
             PI +  +   +++TK         + M   GIE      + ++  Y R  KL  A  VL 
Sbjct:    70 PIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLG 129

Query:   201 MMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLH 260
                K    P+ +  +T ++   +  ++++A+  ++RM      P+++T + LI G C   
Sbjct:   130 RAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKG 189

Query:   261 RIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM--------VNDSN 312
             R+ +A+ LID M   G  PD+V+Y  V+  LCK        DL  KM        V   +
Sbjct:   190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 249

Query:   313 LFHDQ----GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH 368
             +  D     G  ++A  L N+M   G   DVVTY++++ G C  G+ D   KML++M   
Sbjct:   250 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 309

Query:   369 GCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEA 428
                P+ V+++A ++     GK LEA+E+ N        P+ ITY+ ++ G  +E  L EA
Sbjct:   310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 369

Query:   429 CDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRG 488
               +   MV KG  P  V  ++LI S C+  ++D   +  +E  +KG   N + + +L+ G
Sbjct:   370 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 429

Query:   489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT 548
             FCQ G L  A  L  +M      P  VTY  ++D L  NG + +A E+  KM    +   
Sbjct:   430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 489

Query:   549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--QKCRTAYNQVIENLCSFGYLEEAGKILG 606
             +  Y  +IH  C   +V+D   L   +  K  +     YN +I  LC  G L EA  +  
Sbjct:   490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFR 549

Query:   607 KVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLC 655
             K+       D  T ++L+ ++L  G  L++        +  LI ++K+C
Sbjct:   550 KMKEDGCTPDDFTYNILIRAHLG-GSGLIS--------SVELIEEMKVC 589

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G30290	unknown protein; unknown protein (806 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT4G29750	RNA binding; RNA binding; FUNCTIONS IN- RNA binding; LOCATED IN- chloroplast; EXPRESSED IN- 22 [...] (776 aa)							•		0.940
	AT1G11210	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- respon [...] (308 aa)							•		0.919
	AT1G31150	transcription factor; transcription factor; FUNCTIONS IN- transcription factor activity; INVOLV [...] (673 aa)							•		0.883
	AT1G74720	C2 domain-containing protein; C2 domain-containing protein; FUNCTIONS IN- molecular_function un [...] (1081 aa)							•		0.788
	ATH4	ATATH4; ATPase, coupled to transmembrane movement of substances / transporter; member of ATH su [...] (872 aa)							•		0.599
	AtSIP1	AtSIP1 (Arabidopsis thaliana seed imbibition 1); hydrolase, hydrolyzing O-glycosyl compounds; A [...] (754 aa)							•		0.575
	AT3G12730	myb family transcription factor; myb family transcription factor; FUNCTIONS IN- transcription f [...] (235 aa)							•		0.465
	NHL1	NHL1; encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Ar [...] (209 aa)							•		0.440
	SP1L2	SP1L2 (SPIRAL1-LIKE2); SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all me [...] (110 aa)							•		0.440
	AT1G63750	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding; ATP binding / nu [...] (1131 aa)							•		0.438

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	701
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-21
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-19
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-19
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-10
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-09
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-08
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-06
pfam01535	31	pfam01535, PPR, PPR repeat	4e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	9e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
pfam01535	31	pfam01535, PPR, PPR repeat	8e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.002
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 98.8 bits (246), Expect = 3e-21
 Identities = 100/462 (21%), Positives = 181/462 (39%), Gaps = 97/462 (20%)

Query: 160 AKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIH 219
           A+ V   M RR       +++ ++  Y   G+    + +   M++ +V P+L+   + I 
Sbjct: 241 ARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI- 295

Query: 220 VLVVGNKLAKALRFLERMQ----LAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLK 275
                 +L    R    M       G   +V   N LI+ Y  L    +A K+   M  K
Sbjct: 296 ---SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352

Query: 276 GCSPDKVSYYTVM-GYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMG 334
               D VS+  ++ GY                   + N   D+     A E    M Q  
Sbjct: 353 ----DAVSWTAMISGY-------------------EKNGLPDK-----ALETYALMEQDN 384

Query: 335 CIPDVVTYTAVVNGFCRVGELDQAKKM------------------LQQMY---------- 366
             PD +T  +V++    +G+LD   K+                  L +MY          
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444

Query: 367 ---HHGCKPNTVSYTAFLNGLCHNGKSLEA----REMINTSEEEWWTPNAITYSVVMHGL 419
              H+  + + +S+T+ + GL  N +  EA    R+M+ T +     PN++T    +   
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK-----PNSVTLIAALSAC 499

Query: 420 RREGKLSEACDVVREMVK-----KGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKG 474
            R G L    ++   +++      GF P     N L+    R G+M+ A  + Q   ++ 
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMNYA--WNQFNSHEK 552

Query: 475 CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEAT 534
              +VV++  L+ G+   G    A+ L + M     +PD VT+ +++ A S++G V +  
Sbjct: 553 ---DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609

Query: 535 ELMMKMLSK-GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKM 575
           E    M  K  + P +  Y  V+    + G++ +    + KM
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 93.4 bits (232), Expect = 1e-19
 Identities = 86/421 (20%), Positives = 168/421 (39%), Gaps = 72/421 (17%)

Query: 144 YYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMY-VLSMM 202
           + M++ + + ++   GA RVLRL+   G++   + ++ L+   +++GK+ +AM+ V   M
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DAMFEVFHEM 498

Query: 203 QKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRI 262
             A V  N+      I       ++AKA      M+   + P+ + +N LI        +
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558

Query: 263 KDAIKLIDEM-----PLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ 317
             A  ++ EM     P+    PD ++   +M                             
Sbjct: 559 DRAFDVLAEMKAETHPID---PDHITVGALMKACAN-----------------------A 592

Query: 318 GRIEEAKELVNQMSQMGC--IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTV 375
           G+++ AKE+   + +      P+V  YT  VN   + G+ D A  +   M   G KP+ V
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650

Query: 376 SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREM 435
            ++A ++   H G   +A E++  + ++      ++YS +M          +A ++  ++
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710

Query: 436 VKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL 495
                 PT   +N LI +LC EG                                    L
Sbjct: 711 KSIKLRPTVSTMNALITALC-EGN----------------------------------QL 735

Query: 496 EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV 555
            +AL +L +M      P+T+TY+ ++ A  +    +   +L+ +    G+ P +V  R +
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795

Query: 556 I 556
            
Sbjct: 796 T 796

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 93.0 bits (231), Expect = 2e-19
 Identities = 90/389 (23%), Positives = 174/389 (44%), Gaps = 45/389 (11%)

Query: 249 YNCLIKGYCDLHRIKDAIKLIDEMPLKG-CSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM 307
           YN L++      RIKD I L+++M  +G    DK+ Y+      CK++R  +      K+
Sbjct: 377 YNRLLRD----GRIKDCIDLLEDMEKRGLLDMDKI-YHAKFFKACKKQRAVKEAFRFAKL 431

Query: 308 VNDSNLFH---------DQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQA 358
           + +  L               I+ A  ++  + + G   D   YT +++   + G++D  
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491

Query: 359 KKMLQQMYHHGCKPNTVSYTAFLNGLCHNG---KSLEAREMINTSEEEWWTPNAITYSVV 415
            ++  +M + G + N  ++ A ++G    G   K+  A  ++ +   +   P+ + ++ +
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK---PDRVVFNAL 548

Query: 416 MHGLRREGKLSEACDVVREMV--KKGFFPTPVEINLLIQSLCREGKMDGAK---KFMQEC 470
           +    + G +  A DV+ EM        P  + +  L+++    G++D AK   + + E 
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

Query: 471 LNKG---CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD---PDTVTYTTIIDAL 524
             KG        VN  S      QKGD + ALS+ DDM   KK    PD V ++ ++D  
Sbjct: 609 NIKGTPEVYTIAVNSCS------QKGDWDFALSIYDDM---KKKGVKPDEVFFSALVDVA 659

Query: 525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-- 582
              G +++A E++     +G+    V+Y +++         +  L+L E + S  K R  
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPT 718

Query: 583 -TAYNQVIENLCSFGYLEEAGKILGKVLR 610
            +  N +I  LC    L +A ++L ++ R
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKR 747

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 74.0 bits (183), Expect = 9e-17
 Identities = 20/50 (40%), Positives = 35/50 (70%)

Query: 337 PDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH 386
           PDVVTY  +++G+C+ G++++A K+  +M   G KPN  +Y+  ++GLC 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 512 PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ 561
           PD VTY T+ID   K G+VEEA +L  +M  +G+ P V TY  +I   C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.0 bits (165), Expect = 2e-14
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 244 PNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCK 293
           P+V+TYN LI GYC   ++++A+KL +EM  +G  P+  +Y  ++  LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.6 bits (156), Expect = 4e-13
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK 526
           +VV + +LI G+C+KG +EEAL L ++M      P+  TY+ +ID L K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 102/439 (23%), Positives = 170/439 (38%), Gaps = 82/439 (18%)

Query: 161 KRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHV 220
            R L      G+     A   + V   R G+L +A YV   M +     +L   N    V
Sbjct: 110 SRALSSHPSLGVRL-GNAMLSMFV---RFGELVHAWYVFGKMPER----DLFSWN----V 157

Query: 221 LVVG----NKLAKALRFLERMQLAGITPNVLTYNCLIK---GYCDLHR------------ 261
           LV G        +AL    RM  AG+ P+V T+ C+++   G  DL R            
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217

Query: 262 --------------------IKDAIKLIDEMPLKGCSPDKVSYYTVM-GYL----CKE-- 294
                               +  A  + D MP +    D +S+  ++ GY     C E  
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGL 273

Query: 295 -----KRIKEVR-DLM--EKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVV 346
                 R   V  DLM    +++   L  D+      +E+   + + G   DV    +++
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLGDERL---GREMHGYVVKTGFAVDVSVCNSLI 330

Query: 347 NGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWT 406
             +  +G   +A+K+  +M     K + VS+TA ++G   NG   +A E     E++  +
Sbjct: 331 QMYLSLGSWGEAEKVFSRM---ETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386

Query: 407 PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKF 466
           P+ IT + V+      G L     +     +KG     V  N LI+   +   +D A + 
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446

Query: 467 MQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK 526
                 K    +V+++TS+I G        EAL     M L  K P++VT    + A ++
Sbjct: 447 FHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK-PNSVTLIAALSACAR 501

Query: 527 NGRVEEATELMMKMLSKGL 545
            G +    E+   +L  G+
Sbjct: 502 IGALMCGKEIHAHVLRTGI 520

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 23/73 (31%)

Query: 279 PDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD 338
           PD V+Y T++   CK+                       G++EEA +L N+M + G  P+
Sbjct: 1   PDVVTYNTLIDGYCKK-----------------------GKVEEALKLFNEMKKRGIKPN 37

Query: 339 VVTYTAVVNGFCR 351
           V TY+ +++G C+
Sbjct: 38  VYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 82/410 (20%), Positives = 165/410 (40%), Gaps = 29/410 (7%)

Query: 208 APNLLICNTAIHVLVVGNKLAKALRFLERMQLAG-ITPNVLTYNCLIKGYCDLHRIKDAI 266
              + +C + I  LV   +  +AL   E ++     T    TY+ L++    L  I+   
Sbjct: 85  KSGVSLC-SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVK 143

Query: 267 KLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNL--------FHDQG 318
            +   +   G  PD+     V+    K   + + R L ++M   +            D G
Sbjct: 144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203

Query: 319 RIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYT 378
              EA  L  +M + G   +  T+  ++     +G     +++   +   G   +T    
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263

Query: 379 AFLNGLCHNGKSLEAREMINTSEEE----WWTPNAITYSVVMHGLRREGKLSEACDVVRE 434
           A ++     G   +AR + +   E+    W   N++     +HG   E    EA  +  E
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAW---NSMLAGYALHG-YSE----EALCLYYE 315

Query: 435 MVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD 494
           M   G        +++I+   R   ++ AK+     +  G  +++V  T+L+  + + G 
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375

Query: 495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRT 554
           +E+A ++ D M       + +++  +I     +GR  +A E+  +M+++G+ P  VT+  
Sbjct: 376 MEDARNVFDRM----PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431

Query: 555 VIHRYCQVGRVEDLLKLLEKMLSKQKCR---TAYNQVIENLCSFGYLEEA 601
           V+      G  E   ++ + M    + +     Y  +IE L   G L+EA
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 54.3 bits (132), Expect = 9e-10
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 209 PNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD 258
           P+++  NT I       K+ +AL+    M+  GI PNV TY+ LI G C 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 53.9 bits (131), Expect = 9e-10
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 333 MGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQM 365
            G  PDVVTY  +++G CR G +D+A ++L +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 89/431 (20%), Positives = 159/431 (36%), Gaps = 71/431 (16%)

Query: 215 NTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPL 274
           N+ +  L    +L +AL+ LE MQ   +  +   Y  L +  C+  R  +          
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEE-------GS 106

Query: 275 KGCS--PDKVSYYTVM---GYLCKEKRIKEVRD---LMEKMVNDSNLFH---------DQ 317
           + CS          V      L    R  E+     +  KM  + +LF            
Sbjct: 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM-PERDLFSWNVLVGGYAKA 165

Query: 318 GRIEEAKELVNQMSQMGCIPDVVTY----------------------------------- 342
           G  +EA  L ++M   G  PDV T+                                   
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225

Query: 343 TAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEE 402
            A++  + + G++  A+ +  +M    C    +S+ A ++G   NG+ LE  E+  T  E
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRE 281

Query: 403 EWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDG 462
               P+ +T + V+      G      ++   +VK GF       N LIQ     G    
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341

Query: 463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID 522
           A+K       K    + V++T++I G+ + G  ++AL     M      PD +T  +++ 
Sbjct: 342 AEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397

Query: 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR 582
           A +  G ++   +L      KGL+  VV    +I  Y +   ++  L++   +  K    
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV-- 455

Query: 583 TAYNQVIENLC 593
            ++  +I  L 
Sbjct: 456 ISWTSIIAGLR 466

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.9 bits (131), Expect = 1e-09
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 407 PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR 456
           P+ +TY+ ++ G  ++GK+ EA  +  EM K+G  P     ++LI  LC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.4 bits (127), Expect = 4e-09
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 448 NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ 491
           N LI   C++GK++ A K   E   +G   NV  ++ LI G C+
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 473 KGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDM 505
           KG   +VV + +LI G C+ G ++EA+ LLD+M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 68/305 (22%), Positives = 122/305 (40%), Gaps = 48/305 (15%)

Query: 182 LMVAYSRAGKLRNAMYVL-SMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLA 240
           L+  YS+ G + +A  V   M +K  VA N ++   A+H         +AL     M+ +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH-----GYSEEALCLYYEMRDS 319

Query: 241 GITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV 300
           G++ +  T++ +I+ +  L  ++ A +    +   G   D V+   ++    K  R+++ 
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379

Query: 301 RDLMEKMVNDSNL---------FHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCR 351
           R++ ++M    NL         + + GR  +A E+  +M   G  P+ VT+ AV++    
Sbjct: 380 RNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438

Query: 352 VGELDQAKKMLQQMYH-HGCKPNTVSYTAFLNGLCHNGKSLEAREMIN-----TSEEEWW 405
            G  +Q  ++ Q M   H  KP  + Y   +  L   G   EA  MI       +   W 
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498

Query: 406 T-------------------------PNAITYSVVMHGL-RREGKLSEACDVVREMVKKG 439
                                     P  +   VV+  L    G+ +EA  VV  + +KG
Sbjct: 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558

Query: 440 FFPTP 444
               P
Sbjct: 559 LSMHP 563

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 50.4 bits (122), Expect = 1e-08
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 241 GITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMP 273
           G+ P+V+TYN LI G C   R+ +A++L+DEM 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 372 PNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL 419
           P+ V+Y   ++G C  GK  EA ++ N  ++    PN  TYS+++ GL
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.1 bits (116), Expect = 8e-08
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 543 KGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKM 575
           KGL P VVTY T+I   C+ GRV++ ++LL++M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 60/266 (22%), Positives = 117/266 (43%), Gaps = 17/266 (6%)

Query: 318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSY 377
           G  EEA  L  +M   G   D  T++ ++  F R+  L+ AK+    +   G   + V+ 
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363

Query: 378 TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVK 437
           TA ++     G+  +AR + +    +    N I+++ ++ G    G+ ++A ++   M+ 
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIA 419

Query: 438 KGFFPTPVEINLLIQSLCR-EGKMD-GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL 495
           +G  P  V   L + S CR  G  + G + F     N       +++  +I    ++G L
Sbjct: 420 EGVAPNHVTF-LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478

Query: 496 EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVPTVV-TY 552
           +EA +++      ++ P   T   +  AL    R+ +  EL      K  G+ P  +  Y
Sbjct: 479 DEAYAMI------RRAPFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531

Query: 553 RTVIHRYCQVGRVEDLLKLLEKMLSK 578
             +++ Y   GR  +  K++E +  K
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETLKRK 557

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.8 bits (110), Expect = 5e-07
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 512 PDTVTYTTIIDALSKNGRVEEATELMMKM 540
           PD VTY T+ID L + GRV+EA EL+ +M
Sbjct: 5   PDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 10/35 (28%), Positives = 23/35 (65%)

Query: 340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNT 374
           VTY  +++G C+ G +++A ++ ++M   G +P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV 549
           VTY T+ID L K GRVEEA EL  +M  +G+ P V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPD 280
           TYN LI G C   R+++A++L  EM  +G  PD
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGL 545
           VTY ++I    K G++EEA EL  +M  KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 36/179 (20%), Positives = 75/179 (41%)

Query: 133 RQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKL 192
            ++  +  P VY + +   S+      A  +   M ++G++     FS L+     AG L
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665

Query: 193 RNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCL 252
             A  +L   +K  +    +  ++ +          KAL   E ++   + P V T N L
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725

Query: 253 IKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDS 311
           I   C+ +++  A++++ EM   G  P+ ++Y  ++    ++       DL+ +   D 
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 20/212 (9%)

Query: 425 LSEACDVVRE----------MVKKGFFPTPVEIN--LLIQSLCREGKMDGAKKFMQECLN 472
           L EAC  ++           +   GF P    +N  LL+   C  G +  A++   E   
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPE 186

Query: 473 KGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEE 532
           +    N+ ++ ++I G    G+  EA +L  +M+    D +  T+  ++ A +  G    
Sbjct: 187 R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242

Query: 533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENL 592
             +L   +L  G+V        +I  Y + G +ED   + + M   +K   A+N ++   
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM--PEKTTVAWNSMLAGY 300

Query: 593 CSFGYLEEAGKILGKVLRTASKADASTCHVLV 624
              GY EEA  +  ++  +    D  T  +++
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR---TAYNQVIENLC 593
           P VVTY T+I  YC+ G+VE+ LKL  +M  +   +     Y+ +I+ LC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.8 bits (94), Expect = 9e-05
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 410 ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPT 443
           +TY+ ++ GL + G++ EA ++ +EM ++G  P 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 21/30 (70%)

Query: 407 PNAITYSVVMHGLRREGKLSEACDVVREMV 436
           P+ +TY+ ++ GL R G++ EA +++ EM 
Sbjct: 5   PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 482 FTSLIRGFCQKGDLEEALSLLDDM 505
           + SLI G+C+ G LEEAL L  +M
Sbjct: 3   YNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 369 GCKPNTVSYTAFLNGLCHNGKSLEAREM 396
           G KP+ V+Y   ++GLC  G+  EA E+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVEL 29

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGC 277
           TYN LI GYC   ++++A++L  EM  KG 
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 410 ITYSVVMHGLRREGKLSEACDVVREMVKKGF 440
           +TY+ ++ G  + GKL EA ++ +EM +KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT 514
           + +LI G C+ G +EEAL L  +M     +PD 
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 10/31 (32%), Positives = 23/31 (74%)

Query: 340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGC 370
           VTY ++++G+C+ G+L++A ++ ++M   G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 73/345 (21%), Positives = 139/345 (40%), Gaps = 32/345 (9%)

Query: 318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP-NTVS 376
           G++E+A +L+  M ++    D   Y A+     R+ E  +A +   ++         ++ 
Sbjct: 65  GQLEQALKLLESMQELRVPVDEDAYVALF----RLCEWKRAVEEGSRVCSRALSSHPSLG 120

Query: 377 Y---TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVR 433
                A L+     G+ + A  +     E     +  +++V++ G  + G   EA  +  
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYH 176

Query: 434 EMVKKGFFPTPVEINLLIQSLCREGKMDGA--KKFMQECLNKGCA--VNVVNFTSLIRGF 489
            M+  G  P       ++++ C  G  D A  ++     +  G    V+VVN  +LI  +
Sbjct: 177 RMLWAGVRPDVYTFPCVLRT-C-GGIPDLARGREVHAHVVRFGFELDVDVVN--ALITMY 232

Query: 490 CQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV 549
            + GD+  A  + D M       D +++  +I    +NG   E  EL   M    + P +
Sbjct: 233 VKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288

Query: 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRT---AYNQVIENLCSFGYLEEAGKILG 606
           +T  +VI   C++   E L + +   + K          N +I+   S G   EA K+  
Sbjct: 289 MTITSVISA-CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347

Query: 607 KVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD 651
           ++       DA +   ++  Y   G+P  A +    M   N+ PD
Sbjct: 348 RM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 36/162 (22%)

Query: 245 NVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRD-- 302
           +V+++N L+ GY    +   A++L + M   G +PD+V   T +  LC   R   V    
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV---TFISLLCACSRSGMVTQGL 609

Query: 303 -LMEKMVND----SNLFH---------DQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNG 348
                M        NL H           G++ EA   +N+M      PD   + A++N 
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA 666

Query: 349 FCRV------GELDQAKKMLQQMYHHGCKPNTVSYTAFLNGL 384
            CR+      GEL  A+ + +        PN+V Y   L  L
Sbjct: 667 -CRIHRHVELGEL-AAQHIFEL------DPNSVGYYILLCNL 700

Length = 857

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 0.002
 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 6/197 (3%)

Query: 489 FCQKGDLEEALSLLDDMYLCKKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP 547
             + G LEEAL LL+     +  P        +   L   G+ EEA EL+ K L+    P
Sbjct: 69  LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP 128

Query: 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGK 603
            +      +    ++G  E+ L+L EK L           A   +   L + G  EEA +
Sbjct: 129 DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188

Query: 604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI 663
           +L K L+     DA     L   YL  G    A +   +    +   + +    ++  L+
Sbjct: 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLL 247

Query: 664 LEGKSEEADTLMLRFVE 680
             G+ EEA   + + +E
Sbjct: 248 ELGRYEEALEALEKALE 264

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	701
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG2076	895	consensus RNA polymerase III transcription factor	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK14574	822	hmsH outer membrane protein; Provisional	99.85
PRK14574	822	hmsH outer membrane protein; Provisional	99.85
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.84
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.8
KOG2076	895	consensus RNA polymerase III transcription factor	99.79
KOG2003	840	consensus TPR repeat-containing protein [General f	99.77
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.74
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.74
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.73
KOG2003	840	consensus TPR repeat-containing protein [General f	99.73
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.7
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.67
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.66
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.65
KOG1126	638	consensus DNA-binding cell division cycle control	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.56
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.55
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.52
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.51
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.51
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.51
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.49
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.47
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.46
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.44
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.44
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.43
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.41
KOG1129	478	consensus TPR repeat-containing protein [General f	99.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.39
KOG1129	478	consensus TPR repeat-containing protein [General f	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.38
PRK12370	553	invasion protein regulator; Provisional	99.37
PRK12370	553	invasion protein regulator; Provisional	99.36
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.36
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.35
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.31
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.31
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.3
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.27
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.26
PRK11189	296	lipoprotein NlpI; Provisional	99.25
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.24
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.21
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.2
PF13041	50	PPR_2: PPR repeat family	99.2
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.2
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.19
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.19
PF13041	50	PPR_2: PPR repeat family	99.17
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.15
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.14
PRK11189	296	lipoprotein NlpI; Provisional	99.14
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.13
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.09
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.03
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.02
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.01
PRK04841	903	transcriptional regulator MalT; Provisional	98.97
PRK04841	903	transcriptional regulator MalT; Provisional	98.96
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.93
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.93
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.91
KOG1125	579	consensus TPR repeat-containing protein [General f	98.9
PLN02789	320	farnesyltranstransferase	98.89
KOG1125	579	consensus TPR repeat-containing protein [General f	98.88
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.87
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.86
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.84
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.83
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.83
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.81
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.81
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.8
PLN02789	320	farnesyltranstransferase	98.75
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.74
PRK15359	144	type III secretion system chaperone protein SscB;	98.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.7
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.69
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.67
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.63
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.62
PRK15359	144	type III secretion system chaperone protein SscB;	98.61
PF12854	34	PPR_1: PPR repeat	98.6
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.59
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.53
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.49
PF12854	34	PPR_1: PPR repeat	98.49
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.48
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.44
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.41
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.4
KOG0553	304	consensus TPR repeat-containing protein [General f	98.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.32
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.31
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.26
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.2
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.13
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.04
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.97
KOG0553	304	consensus TPR repeat-containing protein [General f	97.97
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.95
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.95
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.94
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.93
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.91
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.89
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.84
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.84
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.79
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.78
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.77
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.77
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.75
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.73
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.73
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.72
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.71
PRK10803	263	tol-pal system protein YbgF; Provisional	97.69
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.67
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.66
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.64
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.64
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.63
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.61
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.6
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.6
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.58
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.57
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.55
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.55
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.54
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.54
PRK10803	263	tol-pal system protein YbgF; Provisional	97.46
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.46
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.44
PF12688	120	TPR_5: Tetratrico peptide repeat	97.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.44
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.42
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.42
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.4
PF12688	120	TPR_5: Tetratrico peptide repeat	97.38
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.36
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.33
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.28
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.22
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.21
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.19
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.18
PF13371	73	TPR_9: Tetratricopeptide repeat	97.14
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.13
PRK15331	165	chaperone protein SicA; Provisional	97.11
PRK15331	165	chaperone protein SicA; Provisional	97.1
PRK11906	458	transcriptional regulator; Provisional	97.06
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.05
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.0
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.96
PRK11906	458	transcriptional regulator; Provisional	96.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.93
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.91
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.9
PF13512	142	TPR_18: Tetratricopeptide repeat	96.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.85
PF13371	73	TPR_9: Tetratricopeptide repeat	96.85
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.72
KOG4555	175	consensus TPR repeat-containing protein [Function	96.69
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.65
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.6
KOG1258	577	consensus mRNA processing protein [RNA processing	96.58
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.57
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.55
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.51
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.5
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.45
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.45
PF13512	142	TPR_18: Tetratricopeptide repeat	96.44
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.41
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.3
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.26
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.06
KOG4234	271	consensus TPR repeat-containing protein [General f	96.01
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.93
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.91
KOG4555	175	consensus TPR repeat-containing protein [Function	95.9
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.87
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.77
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.77
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.76
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.7
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.64
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.64
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.61
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.39
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.31
PF13428	44	TPR_14: Tetratricopeptide repeat	95.24
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.24
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.18
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.04
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.98
PF13428	44	TPR_14: Tetratricopeptide repeat	94.88
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.68
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.66
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.61
KOG1585	308	consensus Protein required for fusion of vesicles	94.6
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.6
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.5
KOG4234	271	consensus TPR repeat-containing protein [General f	94.34
KOG1586	288	consensus Protein required for fusion of vesicles	94.16
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.12
KOG3941	406	consensus Intermediate in Toll signal transduction	93.98
KOG3941	406	consensus Intermediate in Toll signal transduction	93.87
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.84
PF13431	34	TPR_17: Tetratricopeptide repeat	93.73
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.57
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.47
KOG1258	577	consensus mRNA processing protein [RNA processing	93.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.36
KOG1585	308	consensus Protein required for fusion of vesicles	93.3
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.24
PF13431	34	TPR_17: Tetratricopeptide repeat	93.05
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.88
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.87
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.83
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.69
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.46
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.36
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.28
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.95
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.91
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.61
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.44
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.39
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.33
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.29
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.18
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.1
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.9
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.33
PRK09687	280	putative lyase; Provisional	90.2
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.85
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.74
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.65
PF13929	292	mRNA_stabil: mRNA stabilisation	89.13
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.87
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.87
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.45
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.32
KOG4507	886	consensus Uncharacterized conserved protein, conta	88.25
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.2
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.13
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.88
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	86.87
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	86.85
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.76
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	86.57
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	86.52
KOG4570	418	consensus Uncharacterized conserved protein [Funct	86.51
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.24
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.81
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.22
KOG3364	149	consensus Membrane protein involved in organellar	85.19
KOG2471	696	consensus TPR repeat-containing protein [General f	84.99
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.39
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	84.38
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.38
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	84.18
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	83.98
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	83.92
PRK09687	280	putative lyase; Provisional	83.75
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.74
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.63
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.6
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	83.51
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	82.67
KOG3364	149	consensus Membrane protein involved in organellar	82.62
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.01
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	81.93
COG1747	711	Uncharacterized N-terminal domain of the transcrip	81.82
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.54
COG3947	361	Response regulator containing CheY-like receiver a	80.87
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	80.54
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.2

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-68  Score=605.44  Aligned_cols=556  Identities=18%  Similarity=0.210  Sum_probs=502.9

Q ss_pred             HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695          112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK  191 (701)
Q Consensus       112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  191 (701)
                      ...+.+.|+++.|+++|+.+. ..|+.||..+|+.+++++++.+++..+.+++..|.+.|+.|+..+++.++.+|++.|+
T Consensus       159 i~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~  237 (857)
T PLN03077        159 VGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD  237 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence            344445566666666666543 3366666666666666666666666666666666666777777777888888889999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 037695          192 LRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDE  271 (701)
Q Consensus       192 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  271 (701)
                      ++.|..+|+.|.    .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..
T Consensus       238 ~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~  313 (857)
T PLN03077        238 VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY  313 (857)
T ss_pred             HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence            999999999987    6788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---------CCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695          272 MPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLF---------HDQGRIEEAKELVNQMSQMGCIPDVVTY  342 (701)
Q Consensus       272 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~g~~~~a~~~~~~~~~~~~~p~~~~~  342 (701)
                      |.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. .+..         ...|++++|+++|++|.+.|+.||..||
T Consensus       314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~  392 (857)
T PLN03077        314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI  392 (857)
T ss_pred             HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence            99999999999999999999999999999999999965 2222         2339999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 037695          343 TAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE  422 (701)
Q Consensus       343 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  422 (701)
                      +.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+    +|..+|+.+|.+|++.
T Consensus       393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~  468 (857)
T PLN03077        393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN  468 (857)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999999999875    7889999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          423 GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLL  502 (701)
Q Consensus       423 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~  502 (701)
                      |+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++|+|+.+|+++|++++|.++|
T Consensus       469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f  547 (857)
T PLN03077        469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF  547 (857)
T ss_pred             CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence            999999999999986 5899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 037695          503 DDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK---Q  579 (701)
Q Consensus       503 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~  579 (701)
                      +.+     .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.   .
T Consensus       548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~  622 (857)
T PLN03077        548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT  622 (857)
T ss_pred             Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence            987     68999999999999999999999999999999999999999999999999999999999999999854   4


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHH
Q 037695          580 KCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKV  658 (701)
Q Consensus       580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l  658 (701)
                      |+..+|+.++.+|++.|++++|.+++++|   ...||..+|.+|+.+|..+|+.+.+...++++.+  +.|+ ...|..+
T Consensus       623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll  697 (857)
T PLN03077        623 PNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILL  697 (857)
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHH
Confidence            77889999999999999999999999998   4689999999999999999999999999999998  6665 4778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695          659 SERLILEGKSEEADTLMLRFVERGHIQPKS  688 (701)
Q Consensus       659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  688 (701)
                      ...|...|+|++|.++.+.|.++|.++.+.
T Consensus       698 ~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g  727 (857)
T PLN03077        698 CNLYADAGKWDEVARVRKTMRENGLTVDPG  727 (857)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence            899999999999999999999999987664

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-67  Score=584.48  Aligned_cols=535  Identities=17%  Similarity=0.208  Sum_probs=426.8

Q ss_pred             HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695          115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN  194 (701)
Q Consensus       115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  194 (701)
                      +.+.|+++.|+++|+++....-.+++...++.++..|.+.|.+++|..+++.|..    |+..+|+.++.+|++.|+++.
T Consensus       380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~  455 (1060)
T PLN03218        380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG  455 (1060)
T ss_pred             HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence            3345788888888887765544566777777788888888888888888877753    788888888888888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchh
Q 037695          195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPL  274 (701)
Q Consensus       195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  274 (701)
                      |.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..
T Consensus       456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~  535 (1060)
T PLN03218        456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS  535 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 037695          275 KGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGE  354 (701)
Q Consensus       275 ~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  354 (701)
                      .|+.||..+|+.+|.+|++.|++++|.++|+.|..                     ...|+.||..+|+++|.+|++.|+
T Consensus       536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~---------------------~~~gi~PD~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA---------------------ETHPIDPDHITVGALMKACANAGQ  594 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------hcCCCCCcHHHHHHHHHHHHHCCC
Confidence            88888888888888888887777766666666643                     124677888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          355 LDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVRE  434 (701)
Q Consensus       355 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  434 (701)
                      +++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus       595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e  674 (1060)
T PLN03218        595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD  674 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 037695          435 MVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT  514 (701)
Q Consensus       435 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~  514 (701)
                      |.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+||++|.+|++.|++++|.++|++|...|+.||.
T Consensus       675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~  754 (1060)
T PLN03218        675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT  754 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS  594 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~  594 (701)
                      .||+.++.+|++.|++++|.+++.+|.+.|+.||..+|++++..|.  +.++++.++.+.+...++.        .....
T Consensus       755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g--------~~~~~  824 (1060)
T PLN03218        755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG--------RPQIE  824 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc--------ccccc
Confidence            8888888888888888888888888888888888888888876553  2455555554443322111        11112


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037695          595 FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTL  674 (701)
Q Consensus       595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  674 (701)
                      .+..+.|..+|++|++.|+.||..+|+.++.++++.+....+..+++.|...+..|+..+|+.+++++.+.  .++|..+
T Consensus       825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l  902 (1060)
T PLN03218        825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSL  902 (1060)
T ss_pred             cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence            23356799999999999999999999999988888899999999998888888888999999999988432  4689999


Q ss_pred             HHHHHHcCCCCC
Q 037695          675 MLRFVERGHIQP  686 (701)
Q Consensus       675 ~~~~~~~~~~~~  686 (701)
                      +++|.+.|..+.
T Consensus       903 ~~em~~~Gi~p~  914 (1060)
T PLN03218        903 LEEAASLGVVPS  914 (1060)
T ss_pred             HHHHHHcCCCCC
Confidence            999999997443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.4e-68  Score=600.97  Aligned_cols=542  Identities=20%  Similarity=0.219  Sum_probs=464.2

Q ss_pred             HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695          115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN  194 (701)
Q Consensus       115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  194 (701)
                      +...+....|.+++..+.+ .+..++...+|.++..|++.|+++.|..+|++|.    +||..+|+.+|.+|++.|++++
T Consensus        96 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~  170 (857)
T PLN03077         96 CEWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDE  170 (857)
T ss_pred             HhhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHH
Confidence            3445677778887776553 3456777788888888888888888888888885    3677888888888888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchh
Q 037695          195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPL  274 (701)
Q Consensus       195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  274 (701)
                      |..+|++|...|+.||..+|+.++++|+..+++..+.+++..|.+.|+.|+..+||.||.+|++.|+++.|.++|++|. 
T Consensus       171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-  249 (857)
T PLN03077        171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-  249 (857)
T ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888888886 


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-------------CcHHHHHHHHHHHHHcCCCcCHHH
Q 037695          275 KGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ-------------GRIEEAKELVNQMSQMGCIPDVVT  341 (701)
Q Consensus       275 ~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------------g~~~~a~~~~~~~~~~~~~p~~~~  341 (701)
                         .||.++|+++|.+|++.|++++|.++|..|.. .++.|+.             |+.+.|.+++..|.+.|+.||..+
T Consensus       250 ---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~  325 (857)
T PLN03077        250 ---RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV  325 (857)
T ss_pred             ---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence               36778888888888888888888888888876 5666664             788888888888888888888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 037695          342 YTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR  421 (701)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~  421 (701)
                      |++||.+|++.|++++|.++|+.|.    .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus       326 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~  401 (857)
T PLN03077        326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC  401 (857)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence            8888888888888888888888876    467788888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          422 EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSL  501 (701)
Q Consensus       422 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~  501 (701)
                      .|+++.|.++++.|.+.|+.|+..+++.|+.+|++.|++++|.++|+.|.+    +|..+|++++.+|++.|+.++|+.+
T Consensus       402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~l  477 (857)
T PLN03077        402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIF  477 (857)
T ss_pred             cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence            888888888888888888888888888888888888888888888888754    4777888888888888888888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695          502 LDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC  581 (701)
Q Consensus       502 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  581 (701)
                      |++|.. ++.||..||+.++.+|++.|..+.+.+++..|.+.|+.++..++++|+.+|++.|++++|.++|+.+   .|+
T Consensus       478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d  553 (857)
T PLN03077        478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKD  553 (857)
T ss_pred             HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCC
Confidence            888875 4788888888888888888888888888888888888888888899999999999999999999988   677


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH-hCCCCCCHhhHHHHHH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMF-NRNLIPDLKLCKKVSE  660 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~  660 (701)
                      ..+|+.++.+|++.|+.++|.++|++|.+.+..||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|..+++
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999 6899999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 037695          661 RLILEGKSEEADTLMLRF  678 (701)
Q Consensus       661 ~~~~~g~~~~A~~~~~~~  678 (701)
                      .|.+.|++++|.+++++|
T Consensus       634 ~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC
Confidence            999999999999999987

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.5e-64  Score=557.48  Aligned_cols=506  Identities=18%  Similarity=0.258  Sum_probs=464.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037695          138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGI-ECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT  216 (701)
Q Consensus       138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  216 (701)
                      .++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+.+|..+|+.|.    .||..+|+.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~  442 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNM  442 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence            45677899999999999999999999999999986 4678888999999999999999999999997    499999999


Q ss_pred             HHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 037695          217 AIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKR  296 (701)
Q Consensus       217 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~  296 (701)
                      ++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCH
Q 037695          297 IKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH--HGCKPNT  374 (701)
Q Consensus       297 ~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~  374 (701)
                      +++|.++|+.|                       .+.|+.||..+|+.||.+|++.|++++|.++|++|..  .|+.||.
T Consensus       523 ~eeAl~lf~~M-----------------------~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~  579 (1060)
T PLN03218        523 VAKAFGAYGIM-----------------------RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH  579 (1060)
T ss_pred             HHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence            76666555555                       5578999999999999999999999999999999986  6789999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          375 VSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSL  454 (701)
Q Consensus       375 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~  454 (701)
                      .+|+++|.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~  659 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA  659 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          455 CREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEAT  534 (701)
Q Consensus       455 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  534 (701)
                      ++.|++++|.++++.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|...|+.||..+|+.||.+|++.|++++|.
T Consensus       660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl  739 (1060)
T PLN03218        660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL  739 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          535 ELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ--KCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       535 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      ++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.+  |+..+|+.++..|.  +++++|..+.+.+....
T Consensus       740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~  817 (1060)
T PLN03218        740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD  817 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh
Confidence            999999999999999999999999999999999999999999875  56788999986554  35666666655443221


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      .          +......+..++|+.+|++|.+.|+.||..+|..++.++++.+....+..+++.+...+
T Consensus       818 ~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~  877 (1060)
T PLN03218        818 S----------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA  877 (1060)
T ss_pred             c----------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence            0          11122233456799999999999999999999999999989999999988888776554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.5e-61  Score=531.80  Aligned_cols=474  Identities=17%  Similarity=0.256  Sum_probs=292.0

Q ss_pred             CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037695          139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG-IECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTA  217 (701)
Q Consensus       139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  217 (701)
                      .+..+|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.+
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            344567777777777777777777777776543 4566677777777777777776677777776666666666677777


Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695          218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI  297 (701)
Q Consensus       218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~  297 (701)
                      +.+|++.|+++.|.++|++|.    .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|..
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence            777777777777777766665    3566666666666666666666666666666666666666666666666655544


Q ss_pred             hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695          298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSY  377 (701)
Q Consensus       298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  377 (701)
                      ..+.+++.                       .+.+.|+.||..+|++||.+|++.|++++|.++|+.|.    .+|..+|
T Consensus       241 ~~~~~l~~-----------------------~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~  293 (697)
T PLN03081        241 RAGQQLHC-----------------------CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAW  293 (697)
T ss_pred             HHHHHHHH-----------------------HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHH
Confidence            43333333                       33345566666666666666666666666666666664    2456666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          378 TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       378 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  457 (701)
                      +++|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+.+|++.
T Consensus       294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~  373 (697)
T PLN03081        294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW  373 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM  537 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  537 (701)
                      |++++|.++|++|.+    ||..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|
T Consensus       374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f  449 (697)
T PLN03081        374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF  449 (697)
T ss_pred             CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            666666666665542    3556666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          538 MKMLS-KGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       538 ~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      +.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|. ..|+..+|+.++.+|+..|+++.|..+++++++..+ .+
T Consensus       450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~  527 (697)
T PLN03081        450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EK  527 (697)
T ss_pred             HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CC
Confidence            66654 3566666666666666666666666666655543 234445555555555555555555555555543321 13


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 037695          617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI  649 (701)
Q Consensus       617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  649 (701)
                      ..+|..|+..|++.|++++|.++++.|.++|+.
T Consensus       528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            445555555555555555555555555555543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-60  Score=527.83  Aligned_cols=504  Identities=16%  Similarity=0.192  Sum_probs=462.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695          111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG  190 (701)
Q Consensus       111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  190 (701)
                      +...+...|+++.|+++|.|+....++.||..+|+.++.++.+.++++.+.+++..|.+.|+.|+..+|+.++.+|++.|
T Consensus        93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g  172 (697)
T PLN03081         93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG  172 (697)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence            34455667999999999999987777889999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 037695          191 KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLID  270 (701)
Q Consensus       191 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  270 (701)
                      +++.|.++|+.|.    .||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++.
T Consensus       173 ~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~  248 (697)
T PLN03081        173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC  248 (697)
T ss_pred             CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence            9999999999997    689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 037695          271 EMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFC  350 (701)
Q Consensus       271 ~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  350 (701)
                      .+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.                           .+|..+||++|.+|+
T Consensus       249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------------------------~~~~vt~n~li~~y~  301 (697)
T PLN03081        249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------------------------EKTTVAWNSMLAGYA  301 (697)
T ss_pred             HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------CCChhHHHHHHHHHH
Confidence            99999999999999999999999999998888888773                           368999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037695          351 RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACD  430 (701)
Q Consensus       351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~  430 (701)
                      +.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|..
T Consensus       302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~  381 (697)
T PLN03081        302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN  381 (697)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC
Q 037695          431 VVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL-CK  509 (701)
Q Consensus       431 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~  509 (701)
                      +|++|.    .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|
T Consensus       382 vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g  457 (697)
T PLN03081        382 VFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR  457 (697)
T ss_pred             HHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence            999995    4788999999999999999999999999999999999999999999999999999999999999985 69


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHH
Q 037695          510 KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQV  588 (701)
Q Consensus       510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l  588 (701)
                      +.|+..+|+.++.+|++.|++++|.+++++|   ++.|+..+|+.|+.+|...|+++.|..+++++....|. ..+|..+
T Consensus       458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L  534 (697)
T PLN03081        458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL  534 (697)
T ss_pred             CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence            9999999999999999999999999998876   57899999999999999999999999999999988887 6799999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH---HHHH----hc----CChhhHHHHHHHHHhCCCCCCH
Q 037695          589 IENLCSFGYLEEAGKILGKVLRTASKADA-STCHVLV---ESYL----NK----GIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       589 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~---~~~~----~~----g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      +.+|++.|++++|.++++.|.+.|....+ .+|..+.   ..+.    .+    .-++...++..+|.+.|..|+.
T Consensus       535 ~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~  610 (697)
T PLN03081        535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE  610 (697)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999875332 2221110   0000    00    1123445667778888888874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.8e-34  Score=331.02  Aligned_cols=561  Identities=14%  Similarity=0.087  Sum_probs=454.9

Q ss_pred             HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695          115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN  194 (701)
Q Consensus       115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  194 (701)
                      +...|+++.|+..|..+....  |.+...+..+..++.+.|+++.|...+..+.... +.++..+..+...+.+.|++++
T Consensus       305 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~  381 (899)
T TIGR02917       305 EYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEK  381 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            344577777777777665543  4556677778888888888888888888887654 4467778888888888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchh
Q 037695          195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPL  274 (701)
Q Consensus       195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  274 (701)
                      |..+|+++.+.. +.+...+..+...+...|++++|...|+.+.... +.+......++..+.+.|++++|.++++.+..
T Consensus       382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  459 (899)
T TIGR02917       382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEK  459 (899)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            888888887654 4466677777788888888888888888887653 22344566677788888888888888888876


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-----------CCCcHHHHHHHHHHHHHcCCCcCHHHHH
Q 037695          275 KGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFH-----------DQGRIEEAKELVNQMSQMGCIPDVVTYT  343 (701)
Q Consensus       275 ~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~g~~~~a~~~~~~~~~~~~~p~~~~~~  343 (701)
                      . .+++..++..+...+...|++++|...|+.+....+..+           ..|++++|...++.+.... +.+..++.
T Consensus       460 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  537 (899)
T TIGR02917       460 K-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL  537 (899)
T ss_pred             h-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence            4 345677888889999999999999999998876332222           2388999999999988764 34677888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 037695          344 AVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREG  423 (701)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  423 (701)
                      .+...+.+.|++++|..++..+...+ +.+...+..++..|...|++++|..+++.+.... +.+...|..+..++...|
T Consensus       538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  615 (899)
T TIGR02917       538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG  615 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence            88999999999999999999987764 4466778888899999999999999999988753 567788889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD  503 (701)
Q Consensus       424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  503 (701)
                      ++++|...|+.+.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+..++..++..+...|++++|..+++
T Consensus       616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  693 (899)
T TIGR02917       616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAK  693 (899)
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999988764 456778888889999999999999999998876 35567888899999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h
Q 037695          504 DMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R  582 (701)
Q Consensus       504 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~  582 (701)
                      .+.... +++...+..+...+...|++++|...|+.+...+  |+..++..++.++.+.|++++|.+.++++.+..|+ .
T Consensus       694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  770 (899)
T TIGR02917       694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDA  770 (899)
T ss_pred             HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            998765 5567788888889999999999999999998864  55577788889999999999999999999988887 6


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER  661 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~  661 (701)
                      ..+..++..|...|++++|..+|+++++.. +.++.+++.+++.+...|+ .+|+..++++...  .|+ ..++..++.+
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~  846 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWL  846 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHH
Confidence            788888999999999999999999998876 4578888999999999999 7899999999884  443 4677788889


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCchHHHHh
Q 037695          662 LILEGKSEEADTLMLRFVERGHIQPKSEEHLQ  693 (701)
Q Consensus       662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  693 (701)
                      +...|++++|.++++++++.++..+....++.
T Consensus       847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~  878 (899)
T TIGR02917       847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLA  878 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            99999999999999999999887666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.9e-34  Score=330.95  Aligned_cols=553  Identities=13%  Similarity=0.042  Sum_probs=483.0

Q ss_pred             HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695          111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG  190 (701)
Q Consensus       111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  190 (701)
                      +..++...|+++.|+..+..+....  +.++..+..+..++.+.|++++|..+|+.+.+.. +.+...+..+...+...|
T Consensus       335 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  411 (899)
T TIGR02917       335 LASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG  411 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC
Confidence            3455667799999999998776544  6678899999999999999999999999998864 347788889999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 037695          191 KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLID  270 (701)
Q Consensus       191 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  270 (701)
                      ++++|...|+.+.+.. +........++..+.+.|++++|..+++.+... .+++..++..+...|...|++++|.+.|+
T Consensus       412 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  489 (899)
T TIGR02917       412 DPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFE  489 (899)
T ss_pred             ChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999998765 334556677888999999999999999999875 36678899999999999999999999999


Q ss_pred             HchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-----------CCCcHHHHHHHHHHHHHcCCCcCH
Q 037695          271 EMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFH-----------DQGRIEEAKELVNQMSQMGCIPDV  339 (701)
Q Consensus       271 ~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~g~~~~a~~~~~~~~~~~~~p~~  339 (701)
                      ++.+.. +.+...+..+...+...|++++|.+.++.+....+...           ..|+.++|..++.++...+ +.+.
T Consensus       490 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  567 (899)
T TIGR02917       490 KALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEI  567 (899)
T ss_pred             HHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence            998753 34566788889999999999999999999876432211           2389999999999998764 4467


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695          340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL  419 (701)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  419 (701)
                      ..+..++..+.+.|++++|..+++.+.... +.+..+|..+...+...|++++|...|+.+.+.. +.+...+..+...+
T Consensus       568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  645 (899)
T TIGR02917       568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY  645 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            788889999999999999999999998753 5578899999999999999999999999998764 45677888999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL  499 (701)
Q Consensus       420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  499 (701)
                      .+.|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|.
T Consensus       646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~  723 (899)
T TIGR02917       646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI  723 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999998874 5568899999999999999999999999998874 557788888999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037695          500 SLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ  579 (701)
Q Consensus       500 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  579 (701)
                      ..|+.+...  .|+..++..++.++.+.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+..
T Consensus       724 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       724 QAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             HHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            999999885  4566788889999999999999999999999874 6788899999999999999999999999999998


Q ss_pred             CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 037695          580 KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV  658 (701)
Q Consensus       580 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  658 (701)
                      |+ +.++..++..+...|+ .+|+.+++++++..+ .++.++..++..+...|++++|+.+++++++.++. +..++..+
T Consensus       801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l  877 (899)
T TIGR02917       801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL  877 (899)
T ss_pred             CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence            87 7789999999999999 889999999998764 36778889999999999999999999999996654 77899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 037695          659 SERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       659 ~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      +.+|.+.|++++|.+++++|++
T Consensus       878 ~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       878 ALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhC
Confidence            9999999999999999999863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=9.2e-25  Score=253.81  Aligned_cols=552  Identities=14%  Similarity=0.093  Sum_probs=314.1

Q ss_pred             HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHH-------------
Q 037695          113 AVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAF-------------  179 (701)
Q Consensus       113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------------  179 (701)
                      ++....++++.|.+.+..+....  |.++..+..++.++.+.|+.++|.+.++.+.+.. +.++...             
T Consensus        36 ~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~  112 (1157)
T PRK11447         36 RLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG  112 (1157)
T ss_pred             HHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence            44455677777777777665443  4566677777777777777777777777777654 2232221             


Q ss_pred             ---HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037695          180 ---SYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIH-VLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKG  255 (701)
Q Consensus       180 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  255 (701)
                         ..+...+.+.|++++|++.|+.+.+.. +|+...-..... .....|+.++|+..++++.... +-+...+..+...
T Consensus       113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l  190 (1157)
T PRK11447        113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL  190 (1157)
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence               222335666777777777777776543 333221111111 1223477777777777777652 3345566667777


Q ss_pred             HHhcCChhHHHHHHHHchhCCCC----------------CCHH---HHHHHHHHHHHcCChhHHHHHHHHHHhcC-----
Q 037695          256 YCDLHRIKDAIKLIDEMPLKGCS----------------PDKV---SYYTVMGYLCKEKRIKEVRDLMEKMVNDS-----  311 (701)
Q Consensus       256 ~~~~g~~~~A~~~~~~m~~~g~~----------------pd~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----  311 (701)
                      +...|+.++|+..|+++......                ++..   .+...+..+-.......|...+.......     
T Consensus       191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~  270 (1157)
T PRK11447        191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF  270 (1157)
T ss_pred             HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence            77777777777777776542100                0000   00000000001111122222222211100     


Q ss_pred             ------CCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH-------
Q 037695          312 ------NLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP-NTVSY-------  377 (701)
Q Consensus       312 ------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-------  377 (701)
                            ......|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....+       
T Consensus       271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence                  00011255555555555555432 1244555555555555555555555555555432110 10111       


Q ss_pred             -----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----
Q 037695          378 -----TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEI-----  447 (701)
Q Consensus       378 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-----  447 (701)
                           ..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|+..|+++++.. +.+...+     
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~  427 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN  427 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence                 111223445555555555555555532 2233444445555555555555555555555432 1122221     


Q ss_pred             -------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          448 -------------------------------------NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFC  490 (701)
Q Consensus       448 -------------------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  490 (701)
                                                           ..+...+...|++++|...|+++++.. +-+...+..+...|.
T Consensus       428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~  506 (1157)
T PRK11447        428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR  506 (1157)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence                                                 223334456677777777777777652 335566667777777


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------------------------------------HHHHHh
Q 037695          491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTI--------------------------------------------IDALSK  526 (701)
Q Consensus       491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------------------------------------i~~~~~  526 (701)
                      +.|++++|...++++.+.. +.+...+..+                                            ...+..
T Consensus       507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD  585 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence            8888888888887776532 1122222222                                            223344


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695          527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL  605 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  605 (701)
                      .|+.++|..+++    . .++++..+..+...+.+.|++++|+..|+++++..|. ..++..++..|...|++++|++.+
T Consensus       586 ~G~~~eA~~~l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l  660 (1157)
T PRK11447        586 SGKEAEAEALLR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL  660 (1157)
T ss_pred             CCCHHHHHHHHH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            455555555444    1 2455666677788888888888888888888888877 677888888888888888888888


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--C---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          606 GKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI--P---DLKLCKKVSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       606 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      +++++.. +.+..++..++.++...|++++|.+++++++.....  |   +..++..++..+...|++++|+.+|++++.
T Consensus       661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            8877654 235666777788888888888888888888774321  1   124566677888888888888888888875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=2.6e-23  Score=241.75  Aligned_cols=532  Identities=13%  Similarity=0.067  Sum_probs=383.8

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH--------
Q 037695          143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLIC--------  214 (701)
Q Consensus       143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------  214 (701)
                      ..-..++.....++.+.|.+.+.++.... +.++..+..++..+.+.|+.++|.+.+++..+.. +.+....        
T Consensus        30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~  107 (1157)
T PRK11447         30 QLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLL  107 (1157)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHh
Confidence            35556777888999999999999998754 4488999999999999999999999999998875 3333332        


Q ss_pred             --------HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChH-HHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHH
Q 037695          215 --------NTAIHVLVVGNKLAKALRFLERMQLAGITPNVL-TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYY  285 (701)
Q Consensus       215 --------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~  285 (701)
                              ..+...+...|++++|+..|+.+.... +|+.. ....+.......|+.++|++.|+++.+.. +-+...+.
T Consensus       108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~  185 (1157)
T PRK11447        108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN  185 (1157)
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence                    333456888999999999999998653 44432 11122222334699999999999998873 33566788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcCCC-------------------------------CCCCCcHHHHHHHHHHHHHcC
Q 037695          286 TVMGYLCKEKRIKEVRDLMEKMVNDSNL-------------------------------FHDQGRIEEAKELVNQMSQMG  334 (701)
Q Consensus       286 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------~~~~g~~~~a~~~~~~~~~~~  334 (701)
                      .+...+...|+.++|...++++......                               +++......|...+..+....
T Consensus       186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~  265 (1157)
T PRK11447        186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL  265 (1157)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence            8889999999999999999998653211                               011122333444444333322


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH-
Q 037695          335 CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTP-NAITY-  412 (701)
Q Consensus       335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-  412 (701)
                      ..|.... ......+...|++++|+..|++.+... +-+...+..+...+.+.|++++|+..|++..+..... ....+ 
T Consensus       266 ~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~  343 (1157)
T PRK11447        266 ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE  343 (1157)
T ss_pred             cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence            2222211 233556778999999999999999863 3377888999999999999999999999998754211 11112 


Q ss_pred             -----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695          413 -----------SVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVN  481 (701)
Q Consensus       413 -----------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  481 (701)
                                 ......+.+.|++++|...|+++++.. +.+...+..+...+...|++++|+..|+++++.. +.+...
T Consensus       344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a  421 (1157)
T PRK11447        344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA  421 (1157)
T ss_pred             HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence                       122446778999999999999999874 4567778889999999999999999999998763 223333


Q ss_pred             HHHH------------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695          482 FTSL------------------------------------------IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT  519 (701)
Q Consensus       482 ~~~l------------------------------------------l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  519 (701)
                      +..+                                          ...+...|++++|+..|++..+.. +-+...+..
T Consensus       422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~  500 (1157)
T PRK11447        422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR  500 (1157)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            3322                                          233446788888888888887743 224566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------------------
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML-----------------------  576 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------------  576 (701)
                      +...|.+.|++++|...++++.+.. +.++..+..+...+...++.++|+..++++.                       
T Consensus       501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~  579 (1157)
T PRK11447        501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET  579 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence            8888888899999999888887643 3344433333333333444444444333221                       


Q ss_pred             -----------------hcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695          577 -----------------SKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       577 -----------------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  638 (701)
                                       ...|. +..+..++..+.+.|++++|+..|+++++..+. ++..+..++..|...|++++|++
T Consensus       580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~  658 (1157)
T PRK11447        580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA  658 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence                             12333 456677888899999999999999999987644 78889999999999999999999


Q ss_pred             HHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          639 VACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       639 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      .++++.+  ..|+ ......++.++...|++++|.++++++++..+..|+
T Consensus       659 ~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        659 QLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             HHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            9998887  4444 466777888999999999999999999988766554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=8.4e-22  Score=218.34  Aligned_cols=540  Identities=11%  Similarity=0.028  Sum_probs=299.3

Q ss_pred             HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------
Q 037695          113 AVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVA-------  185 (701)
Q Consensus       113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-------  185 (701)
                      .++...|+++.|+..++.+....  |.|...+..+..+    +++..|..+++++.+.. +-+..++..+...       
T Consensus        86 ~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l  158 (987)
T PRK09782         86 EAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNAL  158 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchh
Confidence            33344566666666655544432  3333333333111    55556666666665543 2233444444333       


Q ss_pred             -HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh-cCCh
Q 037695          186 -YSRAGKLRNAMYVLSMMQKAAVAPNLLICNTA-IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD-LHRI  262 (701)
Q Consensus       186 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~  262 (701)
                       |.+.+...+++.    .......|+..+.... .+.|.+.|+++.|+.++.++.+.+ +.+..-...|...|.. .++ 
T Consensus       159 ~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-  232 (987)
T PRK09782        159 RLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-  232 (987)
T ss_pred             hhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-
Confidence             444433333332    2222222334433333 677777777777777777777764 3344445556566666 355 


Q ss_pred             hHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-------------------------
Q 037695          263 KDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ-------------------------  317 (701)
Q Consensus       263 ~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------------------------  317 (701)
                      +.+..+++.    .++-+...+..+...|.+.|+.++|..+++.+.......|..                         
T Consensus       233 ~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~  308 (987)
T PRK09782        233 DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF  308 (987)
T ss_pred             HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence            666666442    223467777788888888999999988888774421111111                         


Q ss_pred             ------------------CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695          318 ------------------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFC--RVGELDQAKKMLQQMYHHGCKPNTVSY  377 (701)
Q Consensus       318 ------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~  377 (701)
                                        +.++.+.++    +  .+.|.....  .+....  ..+...++...+..|.... +-+....
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l  379 (987)
T PRK09782        309 ADNRQYVVGATLPVLLKEGQYDAAQKL----L--ATLPANEML--EERYAVSVATRNKAEALRLARLLYQQE-PANLTRL  379 (987)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHH----h--cCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHH
Confidence                              222222211    1  123322221  222211  2245556666666665541 1244444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC---HHHHHHH---------------------
Q 037695          378 TAFLNGLCHNGKSLEAREMINTSEEE-W-WTPNAITYSVVMHGLRREGK---LSEACDV---------------------  431 (701)
Q Consensus       378 ~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~A~~~---------------------  431 (701)
                      -.+.....+.|+.++|..+|...... + ...+......++..|.+.+.   ..++..+                     
T Consensus       380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  459 (987)
T PRK09782        380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD  459 (987)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence            44444556667777777777766552 1 11223333345555555443   2222211                     


Q ss_pred             -HHHHHHc-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          432 -VREMVKK-G-FFP--TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMY  506 (701)
Q Consensus       432 -~~~m~~~-~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  506 (701)
                       +...... + .++  +...+..+..++.. ++..+|...+......  .|+......+...+...|++++|...|+++.
T Consensus       460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~  536 (987)
T PRK09782        460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS  536 (987)
T ss_pred             hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence             1111111 1 133  45566666665555 6666777766666554  2343333333444456777777777777765


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHH
Q 037695          507 LCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYN  586 (701)
Q Consensus       507 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  586 (701)
                      ..  +|+...+..+..++.+.|++++|..++++..+.. ++....+..+.....+.|++++|...++++++..|+...+.
T Consensus       537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~  613 (987)
T PRK09782        537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYV  613 (987)
T ss_pred             cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence            42  3444445556666677777777777777777653 33333333344444455777777777777777777766677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhc
Q 037695          587 QVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILE  665 (701)
Q Consensus       587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~  665 (701)
                      .++.++.+.|++++|+..++++++..+. ++..++.++.++...|++++|+..++++++  ..|+ ...+..++.++...
T Consensus       614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        614 ARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence            7777777777777777777777776533 566677777777777777777777777777  4443 46666777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCc
Q 037695          666 GKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       666 g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      |++++|+..++++++..|....
T Consensus       691 Gd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        691 DDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             CCHHHHHHHHHHHHhcCCCCch
Confidence            7777777777777776664433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=6.6e-21  Score=211.30  Aligned_cols=547  Identities=12%  Similarity=0.030  Sum_probs=364.9

Q ss_pred             cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 037695          117 SQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAM  196 (701)
Q Consensus       117 ~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~  196 (701)
                      ..|+++.|+..|+.+....  |.++.++..+..+|.+.|++++|...+++..+..  |+...|..++..+   +++.+|.
T Consensus        56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~  128 (987)
T PRK09782         56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV  128 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence            3499999999999988776  6678899999999999999999999999999864  4444444444333   8999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHH--------HHccCCHhHHHHHHHHHHhCCCCCChHHHHHH-HHHHHhcCChhHHHH
Q 037695          197 YVLSMMQKAAVAPNLLICNTAIHV--------LVVGNKLAKALRFLERMQLAGITPNVLTYNCL-IKGYCDLHRIKDAIK  267 (701)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~  267 (701)
                      .+|+++.+.. +-+...+..+...        |.+.   ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus       129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~  203 (987)
T PRK09782        129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT  203 (987)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence            9999999875 4455566555555        5555   45555554 3333233345544444 899999999999999


Q ss_pred             HHHHchhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcC--------CCCCCCCcHHHHHHHHHHHHHcCCC-c
Q 037695          268 LIDEMPLKGCSPDKVSYYTVMGYLCK-EKRIKEVRDLMEKMVNDS--------NLFHDQGRIEEAKELVNQMSQMGCI-P  337 (701)
Q Consensus       268 ~~~~m~~~g~~pd~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~--------~~~~~~g~~~~a~~~~~~~~~~~~~-p  337 (701)
                      ++.++.+.+. .+..-...|..+|.. .++ +.+..+++...+..        ..+...|+.++|..++.++...-.. |
T Consensus       204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~  281 (987)
T PRK09782        204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA  281 (987)
T ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence            9999998853 344546666667776 355 66666644321100        0011125555555555554433211 2


Q ss_pred             CHHHHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          338 DVVTYTAV------------------------------VNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHN  387 (701)
Q Consensus       338 ~~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  387 (701)
                      ...+|.-+                              +..+.+.++++-+.++.      .+.|.....-.-..+....
T Consensus       282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~  355 (987)
T PRK09782        282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVAT  355 (987)
T ss_pred             ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhcccc
Confidence            22222111                              11112222222111110      0112111110001111122


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhc--------
Q 037695          388 GKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKK-G-FFPTPVEINLLIQSLCRE--------  457 (701)
Q Consensus       388 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~--------  457 (701)
                      +...++...+..|.... +-+....--+.-...+.|+.++|..+++..... + -.++......++..|.+.        
T Consensus       356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence            33444444444444431 224444444555678899999999999988762 1 233444555666666544        


Q ss_pred             -----------------CCHHHHHHHHHHHHHc-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 037695          458 -----------------GKMDGAKKFMQECLNK-G-CAV--NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVT  516 (701)
Q Consensus       458 -----------------g~~~~a~~~~~~~~~~-~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  516 (701)
                                       |+...+...+...... + .++  +...|..+..++.. ++.++|+..+.+....  .|+...
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~  511 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ  511 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence                             3333334444444332 1 244  67788888888877 8999999988888763  466555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF  595 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~  595 (701)
                      ...+..++...|++++|...|+++...  +|+...+..+..++.+.|++++|..+++++++..|. ...+..+...+...
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~  589 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP  589 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence            445556667999999999999998664  555666777788899999999999999999998877 44444455555677


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHH
Q 037695          596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTL  674 (701)
Q Consensus       596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  674 (701)
                      |++++|...++++++..  |+...+..++.++.+.|++++|+..+++++.  ..|+ ...+..++.++...|++++|+..
T Consensus       590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999865  4688899999999999999999999999999  5565 47888899999999999999999


Q ss_pred             HHHHHHcCCCCCchHHHHh
Q 037695          675 MLRFVERGHIQPKSEEHLQ  693 (701)
Q Consensus       675 ~~~~~~~~~~~~~~~~~l~  693 (701)
                      ++++++..|..+....++-
T Consensus       666 l~~AL~l~P~~~~a~~nLA  684 (987)
T PRK09782        666 LERAHKGLPDDPALIRQLA  684 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHH
Confidence            9999999988776665543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.3e-20  Score=194.86  Aligned_cols=563  Identities=14%  Similarity=0.080  Sum_probs=399.3

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 037695          120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVL  199 (701)
Q Consensus       120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  199 (701)
                      +.+.|.+-|+.+.+++  |++...+---..+....+++..|..+|..........-+...-.+..++.+.|+.+.|+..|
T Consensus       145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence            3577888888887776  66665555555566677888888888888655332222222334446667888888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHcc---CCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCC
Q 037695          200 SMMQKAAVAPNLLICNTAIHVLVVG---NKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKG  276 (701)
Q Consensus       200 ~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  276 (701)
                      ....+.. +.++.++..|.-.-...   ..+..+..++....... .-|+...+.|...|.-.|+++.++.+...+....
T Consensus       223 ~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t  300 (1018)
T KOG2002|consen  223 ERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT  300 (1018)
T ss_pred             HHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence            8887654 23333333333222222   23555666665555443 4466777788888888888888888887776542


Q ss_pred             CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CCC---------CCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695          277 CS--PDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNL---FHD---------QGRIEEAKELVNQMSQMGCIPDVVTY  342 (701)
Q Consensus       277 ~~--pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~  342 (701)
                      ..  .-...|..+.++|-..|+++.|...|....+..+-   .|.         .|+++.+...|+.+.+. .+-+..+.
T Consensus       301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm  379 (1018)
T KOG2002|consen  301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM  379 (1018)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence            11  12345777778888888888888887766553321   121         17778888888887765 23355666


Q ss_pred             HHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHH
Q 037695          343 TAVVNGFCRVG----ELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTS----EEEWWTPNAITYSV  414 (701)
Q Consensus       343 ~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~  414 (701)
                      ..|...|...+    ..+.|..++......- +.|...|-.+...+-...-+ .++..|...    ...+-.+.+...|.
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNN  457 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNN  457 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence            66666676664    4577777777776653 44777887777776654443 335555443    34455577888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          415 VMHGLRREGKLSEACDVVREMVKK---GFFPTP------VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL  485 (701)
Q Consensus       415 ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  485 (701)
                      +.......|.+..|...|......   ...++.      .+--.+...+-..++.+.|.++|..+.+. .|.-+..|--+
T Consensus       458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl  536 (1018)
T KOG2002|consen  458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRL  536 (1018)
T ss_pred             HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHh
Confidence            999999999999999999987765   112222      22334555666778999999999999886 33334445445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---
Q 037695          486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTVVTYRTVIHRYCQ---  561 (701)
Q Consensus       486 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~---  561 (701)
                      +......+...+|...+....... ..++..++.+...+.+...+..|.+-|....+. ...+|+.+...|.+.|.+   
T Consensus       537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~  615 (1018)
T KOG2002|consen  537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH  615 (1018)
T ss_pred             hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence            444445678899999999988653 556677777888899999999999877777664 223688888888886653   


Q ss_pred             ---------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          562 ---------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       562 ---------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                               .+..++|+++|.+++..+|. ..+-+.++-+++..|++.+|..+|.++.+... -...+|-.++.+|..+|
T Consensus       616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~  694 (1018)
T KOG2002|consen  616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQG  694 (1018)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHH
Confidence                     34678899999999999887 66778899999999999999999999988653 36678889999999999


Q ss_pred             ChhhHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695          632 IPLLAYKVACRMFNR-NLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL  692 (701)
Q Consensus       632 ~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  692 (701)
                      ++..|+++|+...++ ....+..+...|++++.+.|++.+|.+++.++....|..+....++
T Consensus       695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~  756 (1018)
T KOG2002|consen  695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL  756 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence            999999999999884 3445679999999999999999999999999999999888765543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=2e-22  Score=197.43  Aligned_cols=456  Identities=15%  Similarity=0.121  Sum_probs=323.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 037695          179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD  258 (701)
Q Consensus       179 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  258 (701)
                      ...|..-..+.|++.+|.+--...-..+ +.+....-.+-..+.+..+.+.....-....+. .+.-..+|..+...+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence            4566666678888888888666555433 333334444445566666666655544443332 23446788888888888


Q ss_pred             cCChhHHHHHHHHchhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCc
Q 037695          259 LHRIKDAIKLIDEMPLKGCSP-DKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIP  337 (701)
Q Consensus       259 ~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p  337 (701)
                      .|+++.|+.+++.+.+.  .| ....|..+..++...|+.+.|.+.|...++                         +.|
T Consensus       129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq-------------------------lnP  181 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-------------------------LNP  181 (966)
T ss_pred             hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-------------------------cCc
Confidence            88999999988888876  44 466788888888888888888877777655                         456


Q ss_pred             CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHH
Q 037695          338 DVVTYTA-VVNGFCRVGELDQAKKMLQQMYHHGCKP-NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN-AITYSV  414 (701)
Q Consensus       338 ~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~  414 (701)
                      +.....+ +...+-..|++++|...|.+.++..  | =...|+.|...+-..|+.-.|+..|++..+.  .|+ ...|..
T Consensus       182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiN  257 (966)
T KOG4626|consen  182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYIN  257 (966)
T ss_pred             chhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhh
Confidence            6554333 3344445788888888888877652  3 2456777888888888888888888888764  344 456777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          415 VMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD  494 (701)
Q Consensus       415 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  494 (701)
                      |...|-..+.+++|...|.+..... +.....+..+...|...|.++.|+..|++.++.. +.-...|+.|..++...|+
T Consensus       258 LGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~  335 (966)
T KOG4626|consen  258 LGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS  335 (966)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence            7788888888888888887776652 3345567777777788888888888888887762 3346678888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT-VVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      +.+|...|.+..... +.-....+.|...|...|++++|..+|....+.  .|. ....+.|...|-++|++++|+..|+
T Consensus       336 V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  336 VTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             hHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence            888888888877642 223556777888888888888888888887764  333 5567778888888888888888888


Q ss_pred             HHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          574 KMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       574 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      +++...|. ..+++.++..|...|+...|++.+.+++..++. -....+.|+..|.-.|+..+|+.-|+.+++  ++||.
T Consensus       413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf  489 (966)
T KOG4626|consen  413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF  489 (966)
T ss_pred             HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence            88888887 678888888888888888888888888775422 355677788888888888888888888888  77775


Q ss_pred             -hhHHHHHHHHHhcCCHHHHHHHH
Q 037695          653 -KLCKKVSERLILEGKSEEADTLM  675 (701)
Q Consensus       653 -~~~~~l~~~~~~~g~~~~A~~~~  675 (701)
                       ..|..++.++.--.+|.+-.+-+
T Consensus       490 pdA~cNllh~lq~vcdw~D~d~~~  513 (966)
T KOG4626|consen  490 PDAYCNLLHCLQIVCDWTDYDKRM  513 (966)
T ss_pred             chhhhHHHHHHHHHhcccchHHHH
Confidence             56666665555444444433333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=7.7e-22  Score=193.39  Aligned_cols=433  Identities=15%  Similarity=0.132  Sum_probs=345.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037695          143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLV  222 (701)
Q Consensus       143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  222 (701)
                      ....+.+-+.+.|++++|.+.-...-.++ +.+......+-..+....+++....--....+.. +.-..+|..+...+-
T Consensus        50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k  127 (966)
T KOG4626|consen   50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK  127 (966)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence            35667788888999999988765444433 2344444445555666667776655544444433 556678999999999


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHH-HcCChhHHH
Q 037695          223 VGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLC-KEKRIKEVR  301 (701)
Q Consensus       223 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~-~~g~~~~a~  301 (701)
                      ..|+++.|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+..+.  .|+.....+-+..+. ..|++.+|.
T Consensus       128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence            9999999999999999863 335788999999999999999999999988875  677665555444333 467777766


Q ss_pred             HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 037695          302 DLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD-VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN-TVSYTA  379 (701)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~  379 (701)
                      ..+.+.+.                         ..|. ...|+.|...+...|+...|++.|.+.+..  .|+ ...|-.
T Consensus       205 ~cYlkAi~-------------------------~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiN  257 (966)
T KOG4626|consen  205 ACYLKAIE-------------------------TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYIN  257 (966)
T ss_pred             HHHHHHHh-------------------------hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhh
Confidence            66655544                         2333 467888998999999999999999998875  444 467888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          380 FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK  459 (701)
Q Consensus       380 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  459 (701)
                      |...|...+.++.|...+.+..... +...+.+..+...|-..|.++.|+..|++.+... +--+..|+.|..++-..|+
T Consensus       258 LGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~  335 (966)
T KOG4626|consen  258 LGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS  335 (966)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence            8899999999999999888877653 3456677788888899999999999999998874 3346789999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMM  538 (701)
Q Consensus       460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~  538 (701)
                      +.+|...|.+.+.. ++......+.|...|...|.+++|..+|....+  +.|. ...++.|...|-+.|++++|+..|+
T Consensus       336 V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  336 VTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             hHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence            99999999999887 455778889999999999999999999999887  4555 4568889999999999999999999


Q ss_pred             HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          539 KMLSKGLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       539 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      +.+.  +.|+ ...|+.+...|-..|+++.|++.+.+++..+|. ..+++.|+..|...|++.+|++-|+.+++..+.
T Consensus       413 ealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  413 EALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            9887  5666 668899999999999999999999999999998 789999999999999999999999999887654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.90  E-value=7.9e-18  Score=173.41  Aligned_cols=565  Identities=13%  Similarity=0.067  Sum_probs=355.8

Q ss_pred             HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695          112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK  191 (701)
Q Consensus       112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  191 (701)
                      +..+...|+.+.|.+++..+.++.  |.....|..|..+|-..|+.+.+...+-..... .+-|...|..+.......|+
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~  222 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGN  222 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhccc
Confidence            445666799999999999999987  677889999999999999999999988544443 24478999999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHH----HHHHHHHHhcCChhHHHH
Q 037695          192 LRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTY----NCLIKGYCDLHRIKDAIK  267 (701)
Q Consensus       192 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~  267 (701)
                      ++.|.-+|.++++.. +++...+--=...|-+.|+...|..-|.++....-+.+..-+    -.+++.+...++.+.|.+
T Consensus       223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999876 666666666778899999999999999999986321122222    234566777888899999


Q ss_pred             HHHHchhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-----------------------------
Q 037695          268 LIDEMPLKG-CSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ-----------------------------  317 (701)
Q Consensus       268 ~~~~m~~~g-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------------------------  317 (701)
                      .++.....+ -.-+...++.++..+.+...++.+......+... ...++.                             
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v  380 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV  380 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence            999887632 2335567888889999999999888877766551 100000                             


Q ss_pred             ----------CcHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          318 ----------GRIEEAKELVNQMSQMGC--IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLC  385 (701)
Q Consensus       318 ----------g~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  385 (701)
                                ...+....+...+.+..+  .-+...|.-+..+|...|+++.|+.+|..+.....--+...|-.+..+|.
T Consensus       381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM  460 (895)
T ss_pred             HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence                      223333334444444443  33566788888999999999999999999987655556778888999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhc
Q 037695          386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVK--------KGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~  457 (701)
                      ..|.++.|...|....... +.+...-..|...+.+.|+.++|.+++..+..        .+..|...........+...
T Consensus       461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            9999999999999888753 44555666777788889999999999888542        23444444555555666667


Q ss_pred             CCHHHHHHHHHHHHHcC----------------------CCCCHHH----------------------------------
Q 037695          458 GKMDGAKKFMQECLNKG----------------------CAVNVVN----------------------------------  481 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~----------------------~~~~~~~----------------------------------  481 (701)
                      |+.++=..+...|+...                      .+....+                                  
T Consensus       540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~  619 (895)
T KOG2076|consen  540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG  619 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence            76655433333222110                      0000011                                  


Q ss_pred             ---------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC-
Q 037695          482 ---------FTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPDTV----TYTTIIDALSKNGRVEEATELMMKMLSK-GL-  545 (701)
Q Consensus       482 ---------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-  545 (701)
                               +.-++.++++.+++++|+.+...+..... ..+..    .-...+.+....+++..|...++.|+.. +. 
T Consensus       620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~  699 (895)
T KOG2076|consen  620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY  699 (895)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence                     12233344444444445444444433211 01111    1122233334444555555555444443 00 


Q ss_pred             -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695          546 -VP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCH  621 (701)
Q Consensus       546 -~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  621 (701)
                       .| -...|+...+.+.+.++-.--.+++..+....|.  ++.....+..+...+.+.-|...+-.+....+. +|.+.-
T Consensus       700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl  778 (895)
T KOG2076|consen  700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINL  778 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHH
Confidence             01 1122333333333334333333333333333332  122222233444567788888888888776543 233322


Q ss_pred             HHHHHHHh--cC--------ChhhHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          622 VLVESYLN--KG--------IPLLAYKVACRMFNR-NLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       622 ~l~~~~~~--~g--------~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      .++-++..  .+        ..-.++.++++..+. ...-...++..++++|-..|-.--|+.+|+++++..|
T Consensus       779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p  851 (895)
T KOG2076|consen  779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP  851 (895)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence            23222221  11        122345555555541 1111246777799999999999999999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=4.6e-19  Score=193.77  Aligned_cols=92  Identities=11%  Similarity=-0.011  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 037695          179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD  258 (701)
Q Consensus       179 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  258 (701)
                      +......+.+.|++++|+..|++.++.  .|+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            344455555666666666666665543  3455555555566666666666666666655542 2234455555566666


Q ss_pred             cCChhHHHHHHHHch
Q 037695          259 LHRIKDAIKLIDEMP  273 (701)
Q Consensus       259 ~g~~~~A~~~~~~m~  273 (701)
                      .|++++|+..|....
T Consensus       207 lg~~~eA~~~~~~~~  221 (615)
T TIGR00990       207 LGKYADALLDLTASC  221 (615)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            666666655554443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=3.5e-18  Score=186.89  Aligned_cols=431  Identities=10%  Similarity=-0.051  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037695          143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLV  222 (701)
Q Consensus       143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  222 (701)
                      .+......+.+.|+++.|...|...++.  .|++..|..+..+|.+.|++++|+..+....+.. +.+...+..+..+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3556667777777777777777777663  3566677777777777777777777777777654 445566777777777


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 037695          223 VGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRD  302 (701)
Q Consensus       223 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~  302 (701)
                      ..|++++|+..|..+...+ ..+......++..+........+...++.-     +++...+..+. .+...........
T Consensus       206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~  278 (615)
T TIGR00990       206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETK-----PENLPSVTFVG-NYLQSFRPKPRPA  278 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCCCHHHHH-HHHHHccCCcchh
Confidence            7777777777766555432 111111111111111111111122222111     11111111111 1111000000000


Q ss_pred             HHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          303 LMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDV-VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFL  381 (701)
Q Consensus       303 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  381 (701)
                      -+                       ....+  ..+.. ..+..+...+..                              
T Consensus       279 ~~-----------------------~~~~~--~~~~~~~~~~~l~~~~~e------------------------------  303 (615)
T TIGR00990       279 GL-----------------------EDSNE--LDEETGNGQLQLGLKSPE------------------------------  303 (615)
T ss_pred             hh-----------------------hcccc--cccccccchHHHHHHHHH------------------------------
Confidence            00                       00000  00000 000000000000                              


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          382 NGLCHNGKSLEAREMINTSEEEW--WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK  459 (701)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  459 (701)
                        ....+++++|.+.|+.....+  .+.....|..+...+...|++++|+..+++.+... +.....|..+...+...|+
T Consensus       304 --~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~  380 (615)
T TIGR00990       304 --SKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGD  380 (615)
T ss_pred             --hhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCC
Confidence              011233444444444444322  01122233444444444455555555555444432 1223344444444555555


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMK  539 (701)
Q Consensus       460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  539 (701)
                      +++|...|+.+++.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++
T Consensus       381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~  458 (615)
T TIGR00990       381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRR  458 (615)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555555555554431 2234455555555555555555555555555432 22334444555555555666666666555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhH-------HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          540 MLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTA-------YNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       540 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      .+... +.++..+..+...+...|++++|++.|++++...|. ...       ++..+..+...|++++|..+++++++.
T Consensus       459 al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       459 CKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII  537 (615)
T ss_pred             HHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            55432 334555555555555666666666666665555443 111       111111222345666666666666554


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       612 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+. +...+..++..+...|++++|+..|+++.+
T Consensus       538 ~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       538 DPE-CDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             CCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            422 334555566666666666666666666655

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.89  E-value=4e-17  Score=169.36  Aligned_cols=557  Identities=12%  Similarity=0.049  Sum_probs=404.7

Q ss_pred             HHhcCCChHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c
Q 037695          114 VLRSQADERVALQFFYWADRQ-WRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSR---A  189 (701)
Q Consensus       114 ~l~~~~~~~~Al~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~  189 (701)
                      ++...+++..|+.+|..+.+. +..++|+.  -.+..++.+.|+.+.|...|........ -+..++..|.-.-..   .
T Consensus       173 i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~  249 (1018)
T KOG2002|consen  173 IAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDS  249 (1018)
T ss_pred             HHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccch
Confidence            344458999999999987554 44566753  3455788899999999999999987541 122233222222222   2


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CChHHHHHHHHHHHhcCChhHHHH
Q 037695          190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGIT--PNVLTYNCLIKGYCDLHRIKDAIK  267 (701)
Q Consensus       190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~  267 (701)
                      ..+..++.++...-... +-|+...+.|...|...|++..++.+...+......  .-...|-.+.++|...|++++|..
T Consensus       250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~  328 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK  328 (1018)
T ss_pred             HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            34667777777776554 678889999999999999999999999998865311  123457888999999999999999


Q ss_pred             HHHHchhCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC---------------CcHHHHHHHHHHH
Q 037695          268 LIDEMPLKGCSPDK--VSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ---------------GRIEEAKELVNQM  330 (701)
Q Consensus       268 ~~~~m~~~g~~pd~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------g~~~~a~~~~~~~  330 (701)
                      .|.+..+.  .||.  ..+..+...+.+.|+++.+...|+.+.....-.+..               -..+.|..++...
T Consensus       329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~  406 (1018)
T KOG2002|consen  329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV  406 (1018)
T ss_pred             HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence            99888765  4454  445667899999999999999999987633222211               2446777777776


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 037695          331 SQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMY----HHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEE---  403 (701)
Q Consensus       331 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---  403 (701)
                      .+.- +.|...|-.+...+-... ...++.+|....    ..+-.+.+...|.+...+...|++..|...|......   
T Consensus       407 ~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~  484 (1018)
T KOG2002|consen  407 LEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE  484 (1018)
T ss_pred             Hhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence            6653 446778877777665544 444476666544    4555578889999999999999999999999887654   


Q ss_pred             CCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          404 WWTPNA------ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV  477 (701)
Q Consensus       404 ~~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  477 (701)
                      -..++.      .+-..+...+-..++.+.|.+.|..+++.. +.-...|..+..+....+...+|...+...... ...
T Consensus       485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~  562 (1018)
T KOG2002|consen  485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSS  562 (1018)
T ss_pred             hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccC
Confidence            112222      233345666677789999999999998872 323344555554444567888999999988775 344


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCC
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPDTVTYTTIIDALSK------------NGRVEEATELMMKMLSKG  544 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~  544 (701)
                      ++..++.+...+.+...+..|.+-|..+.+.- ..+|..+...|.+.|.+            .+..++|+++|.+.+...
T Consensus       563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d  642 (1018)
T KOG2002|consen  563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND  642 (1018)
T ss_pred             CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence            66677777788889999999998777776432 23566666666665543            244678999999888864


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 037695          545 LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTCHV  622 (701)
Q Consensus       545 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~  622 (701)
                       |-|..+-+-+.-.++..|++.+|..+|.+..+... ...+|-.++.+|...|++..|+++|+..++.-. ..++.+...
T Consensus       643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~  721 (1018)
T KOG2002|consen  643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY  721 (1018)
T ss_pred             -cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence             66778888888889999999999999999887654 467899999999999999999999999877633 456788888


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCCH--hhHHHHHHH-------------------HHhcCCHHHHHHHHHHHHHc
Q 037695          623 LVESYLNKGIPLLAYKVACRMFNRNLIPDL--KLCKKVSER-------------------LILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       623 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~-------------------~~~~g~~~~A~~~~~~~~~~  681 (701)
                      |+.++...|.+.+|.+.+..+..  ..|..  ..++ ++-.                   ....+..+.|.++|..+.+.
T Consensus       722 Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN-~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~  798 (1018)
T KOG2002|consen  722 LARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFN-LALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN  798 (1018)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999988888  44432  2222 2111                   11346778899999999887


Q ss_pred             CCC
Q 037695          682 GHI  684 (701)
Q Consensus       682 ~~~  684 (701)
                      +..
T Consensus       799 ~d~  801 (1018)
T KOG2002|consen  799 GDK  801 (1018)
T ss_pred             CCC
Confidence            765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=1.1e-19  Score=188.70  Aligned_cols=299  Identities=15%  Similarity=0.097  Sum_probs=157.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCC
Q 037695          348 GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN---AITYSVVMHGLRREGK  424 (701)
Q Consensus       348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~  424 (701)
                      .+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+......++   ...+..+...|.+.|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            3456667777777777776653 22444666666666667777777776666665321111   1344555566666666


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 037695          425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN----VVNFTSLIRGFCQKGDLEEALS  500 (701)
Q Consensus       425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~  500 (701)
                      +++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+.    ...+..+...+...|++++|..
T Consensus       123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            666666666665542 33445555666666666666666666666555432211    1123344445555555555555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          501 LLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       501 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      .|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..++.+|.+.|++++|...++++.+..|
T Consensus       202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p  280 (389)
T PRK11788        202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP  280 (389)
T ss_pred             HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            555555432 1223344455555555555555555555555432111123445555555555555555555555555555


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHhCCCCCC
Q 037695          581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN---KGIPLLAYKVACRMFNRNLIPD  651 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~  651 (701)
                      +...+..++..+.+.|++++|..+++++++.  .|+...+..++..++.   .|+..+|+..++++.++++.|+
T Consensus       281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence            5444455555555555555555555555543  3444445444444432   3355555555555555444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=1.3e-19  Score=188.19  Aligned_cols=300  Identities=14%  Similarity=0.134  Sum_probs=252.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 037695          381 LNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPT---PVEINLLIQSLCRE  457 (701)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~  457 (701)
                      ...+...|++++|...|.++.+.. +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|...
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            334567899999999999999864 34566888999999999999999999999988642222   24678889999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD----TVTYTTIIDALSKNGRVEEA  533 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A  533 (701)
                      |+++.|..+|..+.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+...|++++|
T Consensus       121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            9999999999999876 345788899999999999999999999999987653332    12456677888999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      ..+|+++.+.. +.+...+..++..+.+.|++++|.++++++....|.  ..++..++.+|...|++++|...++++.+.
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999864 445778888999999999999999999999988776  456788999999999999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCc
Q 037695          612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL---EGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       612 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      .  |+...+..++..+.+.|++++|+..++++++  ..|+...+..++..+..   .|+.++|+.+++++.+++..+++
T Consensus       279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p  353 (389)
T PRK11788        279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP  353 (389)
T ss_pred             C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence            4  4555668899999999999999999999998  57888888877777664   56999999999999988764444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=1.1e-18  Score=189.77  Aligned_cols=333  Identities=14%  Similarity=0.053  Sum_probs=167.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 037695          345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGK  424 (701)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  424 (701)
                      ++..+.+.|+++.|..++......... +...+..++.++...|+++.|...++++.... +.+...+..+...+...|+
T Consensus        48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~  125 (656)
T PRK15174         48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ  125 (656)
T ss_pred             HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence            344455555555555555555544211 22333333344445555555555555555432 2233444555555555555


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDD  504 (701)
Q Consensus       425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  504 (701)
                      +++|...++++.+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.
T Consensus       126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~  202 (656)
T PRK15174        126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARA  202 (656)
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence            555555555555542 23344455555555555555555555555544321 122222222 224555555555555555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCC
Q 037695          505 MYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVED----LLKLLEKMLSKQK  580 (701)
Q Consensus       505 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~p  580 (701)
                      +......++...+..+..++...|++++|...++++.... +.+...+..+...+...|++++    |...|++++...|
T Consensus       203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P  281 (656)
T PRK15174        203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS  281 (656)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence            5443222223333334445555555555555555555542 3344455555555555555553    5555555555555


Q ss_pred             C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHH
Q 037695          581 C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKV  658 (701)
Q Consensus       581 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l  658 (701)
                      + ..++..++..+...|++++|...++++++..+. ++..+..++.+|...|++++|+..++++..  ..|+. ..+..+
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~  358 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYA  358 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHH
Confidence            5 445555555555555555555555555554322 344455555555555555555555555555  23332 223333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          659 SERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      +.++...|++++|+..|+++.+..|...
T Consensus       359 a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            4455555555555555555555554433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=6.2e-18  Score=184.03  Aligned_cols=300  Identities=12%  Similarity=0.053  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 037695          339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHG  418 (701)
Q Consensus       339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~  418 (701)
                      ...+..++.++...|+++.|...++.+.... +.+...+..+...+...|++++|...+.+..... +.+...+..+...
T Consensus        76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~  153 (656)
T PRK15174         76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT  153 (656)
T ss_pred             hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3444445555666777777777777777653 2245566666677777777777777777776642 3345566667777


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA  498 (701)
Q Consensus       419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A  498 (701)
                      +...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+......++...+..+..++...|++++|
T Consensus       154 l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA  231 (656)
T PRK15174        154 LVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEA  231 (656)
T ss_pred             HHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHH
Confidence            777777777777777666553 2223333333 23666777777777777776653333344444556677777888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          499 LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEE----ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK  574 (701)
Q Consensus       499 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  574 (701)
                      +..+++..... +.+...+..+...|...|++++    |...|++..... |.+...+..+...+.+.|++++|+..+++
T Consensus       232 ~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~  309 (656)
T PRK15174        232 IQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQ  309 (656)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            88888877643 3345666777777788888775    677788777753 44566777778888888888888888888


Q ss_pred             HHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          575 MLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       575 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ++...|. ..++..++.+|...|++++|...++++++..+. +...+..++.++...|++++|+..|+++.+
T Consensus       310 al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        310 SLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8877777 556677778888888888888888887765432 233344456677788888888888888877

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=1.2e-17  Score=185.80  Aligned_cols=417  Identities=11%  Similarity=0.038  Sum_probs=238.4

Q ss_pred             CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHH
Q 037695          208 APNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTV  287 (701)
Q Consensus       208 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l  287 (701)
                      +.+.....-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|.+++++..... +.+...+..+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4555566666777777788888888887776521 4445567777777888888888888888776541 2234555666


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          288 MGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH  367 (701)
Q Consensus       288 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  367 (701)
                      ...+...|++++|...++.+..                       . .+.+.. +..+..++...|+.++|+..++++.+
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~-----------------------~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~  144 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVS-----------------------G-APDKAN-LLALAYVYKRAGRHWDELRAMTQALP  144 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH-----------------------h-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6667777776666666666544                       1 122444 66677777777777777777777776


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          368 HGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI------TYSVVMHGLRREGKLSEACDVVREMVKKGFF  441 (701)
Q Consensus       368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~  441 (701)
                      .. +-+...+..+..++...+..+.|+..++....   .|+..      ....++......                   
T Consensus       145 ~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~-------------------  201 (765)
T PRK10049        145 RA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMP-------------------  201 (765)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccc-------------------
Confidence            53 22444555566666677777777777765543   22210      000011111000                   


Q ss_pred             CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHc-CCCCCH-HHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 037695          442 PTPVEINLLIQSLCREGKM---DGAKKFMQECLNK-GCAVNV-VNFT----SLIRGFCQKGDLEEALSLLDDMYLCKKD-  511 (701)
Q Consensus       442 ~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~-~~~~~~-~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~-  511 (701)
                                 .....+++   +.|+..++.+.+. ...|+. ..+.    ..+..+...|++++|+..|+.+.+.+.. 
T Consensus       202 -----------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~  270 (765)
T PRK10049        202 -----------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII  270 (765)
T ss_pred             -----------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence                       00111112   4455555555432 111111 0110    1122334456666666666666654321 


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------
Q 037695          512 PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP---TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------  581 (701)
Q Consensus       512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------  581 (701)
                      |+. ....+..+|...|++++|..+|+++.......   .......+..++...|++++|.++++.+....|.       
T Consensus       271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~  349 (765)
T PRK10049        271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS  349 (765)
T ss_pred             CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence            221 11123556666666666666666665432100   1233444555566666666666666666655441       


Q ss_pred             ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-
Q 037695          582 ---------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-  651 (701)
Q Consensus       582 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-  651 (701)
                               ...+..++..+...|++++|+.++++++...+. +...+..++..+...|++++|++.+++++.  +.|+ 
T Consensus       350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~  426 (765)
T PRK10049        350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRN  426 (765)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence                     123345566666777777777777777665433 566677777777777777777777777777  4455 


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchH
Q 037695          652 LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSE  689 (701)
Q Consensus       652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  689 (701)
                      ...+...+..+...|++++|..+++++++..|..+...
T Consensus       427 ~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        427 INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            35555566667777777777777777777776555433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=3.8e-17  Score=181.91  Aligned_cols=434  Identities=9%  Similarity=-0.039  Sum_probs=271.8

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 037695          162 RVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAG  241 (701)
Q Consensus       162 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g  241 (701)
                      ..++. .+ ..+.++....-.+......|+.++|+.++....... +.+...+..+..++...|++++|..++++.....
T Consensus         3 ~~~~~-~~-~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~   79 (765)
T PRK10049          3 SWLRQ-AL-KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE   79 (765)
T ss_pred             hhhhh-hh-ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44555 22 235677778888888899999999999999998633 5566679999999999999999999999988762


Q ss_pred             CCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHH
Q 037695          242 ITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIE  321 (701)
Q Consensus       242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~  321 (701)
                       +.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++.+..            
T Consensus        80 -P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~------------  144 (765)
T PRK10049         80 -PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALP------------  144 (765)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence             4456778888899999999999999999998762 33455 88888888889888888888877765            


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHH
Q 037695          322 EAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTV------SYTAFLNGLCHNGKSLEARE  395 (701)
Q Consensus       322 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~  395 (701)
                                 . .+.+...+..+..++...+..+.|+..++....   .|+..      ....++......+       
T Consensus       145 -----------~-~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~-------  202 (765)
T PRK10049        145 -----------R-APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT-------  202 (765)
T ss_pred             -----------h-CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc-------
Confidence                       1 123556667788888889999999998887664   23310      0111111111000       


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHH
Q 037695          396 MINTSEEEWWTPNAITYSVVMHGLRREGKL---SEACDVVREMVKK-GFFPTPV-EI----NLLIQSLCREGKMDGAKKF  466 (701)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~a~~~  466 (701)
                                             ....+++   ++|+..++.+.+. ...|+.. .+    ...+..+...|++++|+..
T Consensus       203 -----------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~  259 (765)
T PRK10049        203 -----------------------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE  259 (765)
T ss_pred             -----------------------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                                   0111111   4444444444432 1111110 00    0002223344555555555


Q ss_pred             HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          467 MQECLNKGCA-VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP---DTVTYTTIIDALSKNGRVEEATELMMKMLS  542 (701)
Q Consensus       467 ~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  542 (701)
                      |+.+.+.+.+ |+. ....+...|...|++++|+..|+++.......   .......+..++...|++++|..+++.+..
T Consensus       260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~  338 (765)
T PRK10049        260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN  338 (765)
T ss_pred             HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence            5555554321 111 11113445555666666666666554322110   122344444455566666666666666554


Q ss_pred             CC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          543 KG-----------LVPT---VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGK  607 (701)
Q Consensus       543 ~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  607 (701)
                      ..           -.|+   ...+..++..+...|++++|+++++++....|. ...+..++..+...|++++|++.+++
T Consensus       339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~  418 (765)
T PRK10049        339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK  418 (765)
T ss_pred             cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            31           0122   123455666777778888888888888777776 56777777777788888888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695          608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL  662 (701)
Q Consensus       608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  662 (701)
                      ++...+ .+...+..++..+...|++++|...++++++  ..|+......+...+
T Consensus       419 al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        419 AEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR  470 (765)
T ss_pred             HHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            777653 2455666677777778888888888888877  556554444443333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.85  E-value=1e-15  Score=166.76  Aligned_cols=465  Identities=12%  Similarity=0.041  Sum_probs=263.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037695          138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRP--EAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICN  215 (701)
Q Consensus       138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  215 (701)
                      |..+.+...-+-...+.|++..|...|++..+..  |+.  ..+ .++..+...|+.++|+..+++.... .+.......
T Consensus        31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~ll  106 (822)
T PRK14574         31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLA  106 (822)
T ss_pred             ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHH
Confidence            3344444555556778888888888888887754  332  333 7777777888888888888887721 122233333


Q ss_pred             HHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC
Q 037695          216 TAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEK  295 (701)
Q Consensus       216 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g  295 (701)
                      .+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+...  .|+...+..++..+...+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~  183 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence            33557777788888888888888763 344666677778888888888888888888765  555555533333333333


Q ss_pred             ChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 037695          296 RIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTV  375 (701)
Q Consensus       296 ~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  375 (701)
                      +..+|.+.++++                       .+.. +-+...+..++.++.+.|-...|.++.+.-      |+..
T Consensus       184 ~~~~AL~~~ekl-----------------------l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f  233 (822)
T PRK14574        184 RNYDALQASSEA-----------------------VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLV  233 (822)
T ss_pred             hHHHHHHHHHHH-----------------------HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------cccc
Confidence            333344444444                       3332 235666677777788888877777666552      2222


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHH----HHHH
Q 037695          376 SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKK-G-FFPTPV----EINL  449 (701)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~----~~~~  449 (701)
                      +-......     ..+.|.+..+..    ..++..- .   .   +---.+.|+.-++.+... + .++...    ...-
T Consensus       234 ~~~~~~~l-----~~~~~a~~vr~a----~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D  297 (822)
T PRK14574        234 SAEHYRQL-----ERDAAAEQVRMA----VLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARID  297 (822)
T ss_pred             CHHHHHHH-----HHHHHHHHHhhc----ccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence            11111110     001111111110    0000000 0   0   000123344444444331 1 111111    1112


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 037695          450 LIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-----KDPDTVTYTTIIDAL  524 (701)
Q Consensus       450 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~  524 (701)
                      .+-++...+++.+++..|+.+...+.+....+-.++.++|...+++++|..+|..+....     ..++......|.-+|
T Consensus       298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~  377 (822)
T PRK14574        298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL  377 (822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence            233445566666666666666665555445555566666666666666666666664422     122333345566666


Q ss_pred             HhcCCHHHHHHHHHHHHhCCC-----------CC--CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695          525 SKNGRVEEATELMMKMLSKGL-----------VP--TV-VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI  589 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~-----------~p--~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~  589 (701)
                      ...+++++|..+++.+.+...           .|  |- ..+..++..+...|++.+|++.++++....|. ......++
T Consensus       378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A  457 (822)
T PRK14574        378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA  457 (822)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            666666666666666665210           12  21 22334455666777777777777777777666 56667777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV  658 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  658 (701)
                      ..+...|.+.+|+..++.+.... +-+..+....+.++...|++.+|......+..  ..|+......+
T Consensus       458 ~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l  523 (822)
T PRK14574        458 SIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQEL  523 (822)
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHH
Confidence            77777777777777776666553 33556666777777777777777777777777  45554433333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.85  E-value=1.3e-15  Score=166.02  Aligned_cols=452  Identities=14%  Similarity=0.088  Sum_probs=308.9

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 037695          183 MVAYSRAGKLRNAMYVLSMMQKAAVAPNL--LICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLH  260 (701)
Q Consensus       183 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  260 (701)
                      +....+.|++..|+..|++..+..  |+.  ..+ .++..+...|+.++|+.++++.... ...+......+...|...|
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence            334458888888888888887664  332  233 7777788888888888888887721 1122233333356777888


Q ss_pred             ChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHH
Q 037695          261 RIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVV  340 (701)
Q Consensus       261 ~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  340 (701)
                      ++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+..                         ..|+..
T Consensus       117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-------------------------~dp~~~  170 (822)
T PRK14574        117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAE-------------------------RDPTVQ  170 (822)
T ss_pred             CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-------------------------cCcchH
Confidence            8888888888888763 22355566666777777777777766666644                         245555


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 037695          341 TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLR  420 (701)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  420 (701)
                      .+..++..+...++..+|+..++++.+.. +-+...+..++.++.+.|-...|.++..+-      |+..+-......  
T Consensus       171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l--  241 (822)
T PRK14574        171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL--  241 (822)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH--
Confidence            55444444444556656888888888763 335666677777888888887777666542      322221111110  


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHH----HHHHHHHHhcCC
Q 037695          421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK--GCAVNVVNF----TSLIRGFCQKGD  494 (701)
Q Consensus       421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~----~~ll~~~~~~g~  494 (701)
                         ..+.|.+.    ++.+..++...    -.   +---.+.|..-++.+...  ..|+....|    .-.+-++...|+
T Consensus       242 ---~~~~~a~~----vr~a~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r  307 (822)
T PRK14574        242 ---ERDAAAEQ----VRMAVLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ  307 (822)
T ss_pred             ---HHHHHHHH----Hhhcccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence               01122222    22221111100    00   000134455555555442  123222222    234557788999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-----LVPTVVTYRTVIHRYCQVGRVEDLL  569 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~  569 (701)
                      +.++++.|+.+...+.+....+-..+.++|...+++++|..+|..+....     .+++......|..++...+++++|.
T Consensus       308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~  387 (822)
T PRK14574        308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY  387 (822)
T ss_pred             HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence            99999999999987765445577889999999999999999999997653     2334444678999999999999999


Q ss_pred             HHHHHHHhcCC-------------C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          570 KLLEKMLSKQK-------------C---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       570 ~~~~~~~~~~p-------------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      .+++++.+..|             +   ......++..+...|++.+|++.+++++... +-|......++..+...|.+
T Consensus       388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p  466 (822)
T PRK14574        388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLP  466 (822)
T ss_pred             HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence            99999988544             1   2244556788889999999999999998876 44999999999999999999


Q ss_pred             hhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695          634 LLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       634 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                      .+|...++.+..  +.|+. .+....+.++...|+|++|..+..++.+..|..++...
T Consensus       467 ~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~  522 (822)
T PRK14574        467 RKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE  522 (822)
T ss_pred             HHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence            999999988877  56654 77778888899999999999999999999998886553

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.84  E-value=2.3e-14  Score=142.46  Aligned_cols=487  Identities=13%  Similarity=0.049  Sum_probs=330.0

Q ss_pred             CCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 037695          155 KLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFL  234 (701)
Q Consensus       155 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~  234 (701)
                      -+.+.|.-++....+. ++.+...|    .++++..-++.|.+++++..+. ++.+...|.+....=-.+|+.+...+++
T Consensus       390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii  463 (913)
T KOG0495|consen  390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII  463 (913)
T ss_pred             cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence            3444555566555553 23333333    3445566667777777776653 3666667766666666777777776666


Q ss_pred             HH----HHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037695          235 ER----MQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPD--KVSYYTVMGYLCKEKRIKEVRDLMEKMV  308 (701)
Q Consensus       235 ~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~  308 (701)
                      .+    +...|+..+...|-.=...|-..|.+-.+..+....+..|+.-.  ..||..-...|.+.+.++-|..+|...+
T Consensus       464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al  543 (913)
T KOG0495|consen  464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL  543 (913)
T ss_pred             HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence            54    33456666666666666667777777777777777666665432  3466666666666666666666665554


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          309 NDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNG  388 (701)
Q Consensus       309 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  388 (701)
                      +                       . ++-+...|...+..--..|..+....+|++.... ++-....|-.....+-..|
T Consensus       544 q-----------------------v-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ag  598 (913)
T KOG0495|consen  544 Q-----------------------V-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAG  598 (913)
T ss_pred             h-----------------------h-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcC
Confidence            4                       1 2334556666655555567777777777777765 2334555666666666778


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          389 KSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQ  468 (701)
Q Consensus       389 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  468 (701)
                      +...|+.++....+.. +.+...|..-+........++.|..+|.+....  .|+...|.--+...--.++.++|.++++
T Consensus       599 dv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  599 DVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             CcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence            8888888887777654 335666777777777777888888888776654  5666666666666666777888888887


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037695          469 ECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT  548 (701)
Q Consensus       469 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  548 (701)
                      +.++. ++.-...|..+...+-+.++++.|...|..-.+. ++..+..|..|...--+.|.+-.|..++++..-.+ |-+
T Consensus       676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~  752 (913)
T KOG0495|consen  676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN  752 (913)
T ss_pred             HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence            77776 4445566777777778888888888877766543 23344566666666667778888888888877765 556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      ...|...|+.-.+.|+.+.|..++.++++.-|+ ...|..-+....+.++-..+...+++     +..|+.+.-..+..+
T Consensus       753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lf  827 (913)
T KOG0495|consen  753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLF  827 (913)
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHH
Confidence            777888888888888888888888888887777 45666666666666665555555544     355777777777888


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          628 LNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQ  685 (701)
Q Consensus       628 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  685 (701)
                      .....++.|.+.|.++++  +.||. ++|..+...+.++|.-++-.+++.++....|..
T Consensus       828 w~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  828 WSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             HHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence            888888888888888888  55665 777777778888888888888888887766543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=2.6e-13  Score=135.10  Aligned_cols=541  Identities=11%  Similarity=0.067  Sum_probs=395.5

Q ss_pred             CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHH------------HHH
Q 037695          119 ADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLM------------VAY  186 (701)
Q Consensus       119 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li------------~~~  186 (701)
                      +|...|.-++..+....  |.++..|-+-.+.--..|.+..|..+...=-+. ++.+...|.--+            .--
T Consensus       265 ~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRLhp~d~aK~vvA~A  341 (913)
T KOG0495|consen  265 EDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRLHPPDVAKTVVANA  341 (913)
T ss_pred             HHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhcCChHHHHHHHHHH
Confidence            35567888877665544  555567776666666777777777665432221 122223332221            111


Q ss_pred             HH-----------cC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHH
Q 037695          187 SR-----------AG----KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNC  251 (701)
Q Consensus       187 ~~-----------~g----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  251 (701)
                      .+           .-    +...=..++.+..+. ++.++..|...+    ..-..+.|..++.+..+. ++.+..    
T Consensus       342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d----  411 (913)
T KOG0495|consen  342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD----  411 (913)
T ss_pred             HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH----
Confidence            11           11    111122233333332 244444444332    334555577777777664 333333    


Q ss_pred             HHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCCCC------------
Q 037695          252 LIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVND---SNLFHD------------  316 (701)
Q Consensus       252 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------------  316 (701)
                      |..+|++..-++.|.++++..++. ++.+...|.+-...--.+|+.+...+++.+-+..   .|...+            
T Consensus       412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e  490 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE  490 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence            334567777888999999988875 6667888887777777788888888877665431   222221            


Q ss_pred             -CCcHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          317 -QGRIEEAKELVNQMSQMGCIP--DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEA  393 (701)
Q Consensus       317 -~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  393 (701)
                       .|..-.+..+....+..|+.-  -..||..-...|.+.+.++-|..+|...++. .+.+...|......--..|..+..
T Consensus       491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl  569 (913)
T KOG0495|consen  491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL  569 (913)
T ss_pred             hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence             166666666777777666543  2468888888999999999999999988875 244667888888777788999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          394 REMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK  473 (701)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  473 (701)
                      ..+|++.... ++.....|......+-..|++..|..++....+.. +.+...+..-+........++.|..+|.+....
T Consensus       570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~  647 (913)
T KOG0495|consen  570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI  647 (913)
T ss_pred             HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence            9999999875 34556667777777888999999999999998874 446778888888899999999999999998774


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037695          474 GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY  552 (701)
Q Consensus       474 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  552 (701)
                        .|+...|..-+......++.++|++++++.++.  -|+ ...|..+.+.+-+.++++.|...|..-.+. +|-.+..|
T Consensus       648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW  722 (913)
T KOG0495|consen  648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW  722 (913)
T ss_pred             --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence              678888888888888889999999999999874  455 457888889999999999999999876664 45567778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          553 RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       553 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                      ..|...--+.|++-.|..++++..-++|. ...|-..+.+=.+.|+.+.|..+..++++. ++.+...|..-|+..-..+
T Consensus       723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~  801 (913)
T KOG0495|consen  723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ  801 (913)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence            88888888999999999999999999998 678889999999999999999999999984 5667888888888887777


Q ss_pred             ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          632 IPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       632 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      +-..+++.+++...     |+.+...++..+....++++|.++|+++++.++..-+
T Consensus       802 rkTks~DALkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD  852 (913)
T KOG0495|consen  802 RKTKSIDALKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD  852 (913)
T ss_pred             cchHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence            77667766655544     7778888999999999999999999999998875544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=2.7e-14  Score=135.01  Aligned_cols=445  Identities=15%  Similarity=0.159  Sum_probs=298.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChh-HHHHHHHHHHHCCCCCCHHHHHHH
Q 037695          141 PIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSR--AGKLR-NAMYVLSMMQKAAVAPNLLICNTA  217 (701)
Q Consensus       141 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l  217 (701)
                      +.+=|.+++.. ..|..+++--+|+.|...|++.++..-..|+...+-  ..++- .-.+.|-.|...| ..+..+|   
T Consensus       116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---  190 (625)
T ss_pred             hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence            44556666544 457888899999999999988888877776664332  22322 2235566666665 4454555   


Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695          218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI  297 (701)
Q Consensus       218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~  297 (701)
                           +.|.+.+  -+|+. .    +.+..+|.+||.++|+--..+.|.+++++......+.+..+||.+|.+-.-    
T Consensus       191 -----K~G~vAd--L~~E~-~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----  254 (625)
T KOG4422|consen  191 -----KSGAVAD--LLFET-L----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----  254 (625)
T ss_pred             -----ccccHHH--HHHhh-c----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence                 3454433  23332 2    456789999999999999999999999999888778899999999976432    


Q ss_pred             hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 037695          298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQ----AKKMLQQMYHHGCKPN  373 (701)
Q Consensus       298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~  373 (701)
                                             -...+++.+|....+.||..|+|+++.+..+.|+++.    |.+++.+|.+.|+.|.
T Consensus       255 -----------------------~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePs  311 (625)
T KOG4422|consen  255 -----------------------SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPS  311 (625)
T ss_pred             -----------------------hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcc
Confidence                                   1225677788888899999999999999999998764    5678889999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C
Q 037695          374 TVSYTAFLNGLCHNGKSLE-AREMINTSEE----EWWTP----NAITYSVVMHGLRREGKLSEACDVVREMVKKG----F  440 (701)
Q Consensus       374 ~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~  440 (701)
                      ..+|..+|..+++.++..+ +..++.++..    ..++|    +...|...+..|.+..+.+-|.++..-+....    +
T Consensus       312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i  391 (625)
T KOG4422|consen  312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI  391 (625)
T ss_pred             hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence            9999999999998887644 4455554433    22233    33456677888888888888887766554321    2


Q ss_pred             CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037695          441 FPTP---VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTY  517 (701)
Q Consensus       441 ~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  517 (701)
                      .|+.   .-|..+....|.....+.....|+.|.-.-.-|+..+...++++....|.++-.-+++..+...|..-+... 
T Consensus       392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l-  470 (625)
T KOG4422|consen  392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL-  470 (625)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH-
Confidence            2332   235666777778888888888888887766677778888888888888888888888888876553222211 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCChhHHHHHHHHHH
Q 037695          518 TTIIDALSKNGRVEEATELMMKMLSKGLVPTVV---TYRTVIHRYCQVGRVEDL-LKLLEKMLSKQKCRTAYNQVIENLC  593 (701)
Q Consensus       518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~p~~~~~~~l~~~~~  593 (701)
                                     -.+++..|......|+..   -+.....-|+ . ++.++ ...-.++.+..-.....+.++-.+.
T Consensus       471 ---------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-a-d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~  533 (625)
T KOG4422|consen  471 ---------------REEILMLLARDKLHPLTPEREQLQVAFAKCA-A-DIKEAYESQPIRQRAQDWPATSLNCIAILLL  533 (625)
T ss_pred             ---------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-H-HHHHHHHhhHHHHHhccCChhHHHHHHHHHH
Confidence                           123333344333333222   2222221111 1 12222 2222344444444667788888888


Q ss_pred             hcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695          594 SFGYLEEAGKILGKVLRTAS----KADASTCHVLVESYLNKGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  647 (701)
                      +.|+.++|.+++.-+.+.+.    .|......-++..-.....+..|+.+++-|...+
T Consensus       534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            99999999999988866543    2233334455666777788888888888887643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.79  E-value=1e-13  Score=143.53  Aligned_cols=540  Identities=13%  Similarity=0.047  Sum_probs=274.1

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037695          146 MMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGN  225 (701)
Q Consensus       146 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  225 (701)
                      .....+...|++++|..++.+.++.. +..+..|-.|...|-..|+.+++...+-.+.... +.|...|..+.......|
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence            33445556699999999999999975 5688999999999999999999998877766554 677799999999999999


Q ss_pred             CHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHH----HHHHHHHcCChhHHH
Q 037695          226 KLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYT----VMGYLCKEKRIKEVR  301 (701)
Q Consensus       226 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~----ll~~~~~~g~~~~a~  301 (701)
                      .+++|.-.|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..-...    +++.+...++.+.|.
T Consensus       222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~  300 (895)
T KOG2076|consen  222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA  300 (895)
T ss_pred             cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999874 55544444556788999999999999999987633222222222    344555566666666


Q ss_pred             HHHHHHHhcCCCCCCC-------------CcHHHHHHHHHHHHHcCCC---------------------------cCHHH
Q 037695          302 DLMEKMVNDSNLFHDQ-------------GRIEEAKELVNQMSQMGCI---------------------------PDVVT  341 (701)
Q Consensus       302 ~~~~~~~~~~~~~~~~-------------g~~~~a~~~~~~~~~~~~~---------------------------p~~~~  341 (701)
                      +.++......+.....             ..++.|......+......                           ++...
T Consensus       301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v  380 (895)
T KOG2076|consen  301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV  380 (895)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence            6666554411111100             2333333333333321001                           11111


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695          342 YTAVVNGFCRVGELDQAKKMLQQMYHHGCKP--NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL  419 (701)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  419 (701)
                       -.++-++.+....+....+...+....+.|  +...|.-+..+|...|++..|+.+|..+......-+...|-.+..+|
T Consensus       381 -~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~  459 (895)
T KOG2076|consen  381 -IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY  459 (895)
T ss_pred             -HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence             011112222233333333333333333111  23344444445555555555555555544433333344444455555


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHh
Q 037695          420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLN--------KGCAVNVVNFTSLIRGFCQ  491 (701)
Q Consensus       420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~  491 (701)
                      ...|..++|.+.|...+... +.+...-..|...+.+.|+.++|.+.+..+..        .+..|+..........+.+
T Consensus       460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~  538 (895)
T KOG2076|consen  460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ  538 (895)
T ss_pred             HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence            55555555555555444432 22233333444444445555555554444221        1122223333333344444


Q ss_pred             cCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHH------HHHHHhC
Q 037695          492 KGDLEEALSLLDDMYLCK-----KDP-----------------DTVTYTTIIDALSKNGRVEEATEL------MMKMLSK  543 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~~~-----~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~  543 (701)
                      .|+.++-+.+-.+|....     +-|                 ...+...++.+-.+.++.....+-      +..-...
T Consensus       539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~  618 (895)
T KOG2076|consen  539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR  618 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence            444444433333333210     000                 000111111111111111100000      0000001


Q ss_pred             CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC--h-hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 037695          544 GLVPTV--VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ----KC--R-TAYNQVIENLCSFGYLEEAGKILGKVLRT-AS  613 (701)
Q Consensus       544 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~  613 (701)
                      |+..+.  ..+.-++.++++.+.+.+|+.+...+....    +.  . ..-...+.+.+..+++..|...+..++.. +.
T Consensus       619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~  698 (895)
T KOG2076|consen  619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF  698 (895)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence            111111  122344555666666666666666665542    11  1 12233344555666666666666666543 11


Q ss_pred             ---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695          614 ---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       614 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                         ..-...|+.......+.|+-.--...+..+...+..-+...+...+..+...+.+.-|..+|-++...+|.+|-...
T Consensus       699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl  778 (895)
T KOG2076|consen  699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL  778 (895)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence               11123333333344444433322333333333222211222223334456688999999999999999998887543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=5.4e-15  Score=140.49  Aligned_cols=483  Identities=13%  Similarity=0.104  Sum_probs=318.5

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHhHHHHHHHHHHhCCCCCCh------H
Q 037695          175 RPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICN-TAIHVLVVGNKLAKALRFLERMQLAGITPNV------L  247 (701)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~  247 (701)
                      +-.+...|.+-|.......+|+..|+-+.+....|+..... .+...+.+...+.+|+++++.....  .|++      .
T Consensus       200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik  277 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK  277 (840)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence            44455556667777788889999999888777777765433 3445677788889999988877754  3332      2


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 037695          248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELV  327 (701)
Q Consensus       248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~  327 (701)
                      +.+.+.-.+.+.|+++.|+..|+...+.  .|+..+-..|+-++.-.|+-+...+.|..|....+ .++...+       
T Consensus       278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~-~~dddky-------  347 (840)
T KOG2003|consen  278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPG-EIDDDKY-------  347 (840)
T ss_pred             HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCC-CCCcccc-------
Confidence            3444555677889999999999988765  67877665666666667888888888888876332 2222100       


Q ss_pred             HHHHHcCCCcCHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHcCCCCCHH---------------------HHHH
Q 037695          328 NQMSQMGCIPDVVTYTAVVN-----GFCRVG--ELDQAKKMLQQMYHHGCKPNTV---------------------SYTA  379 (701)
Q Consensus       328 ~~~~~~~~~p~~~~~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~  379 (701)
                         .+..-.|+....+..|.     -.-+.+  +-++++-.-..+..--+.|+-.                     .=..
T Consensus       348 ---i~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~  424 (840)
T KOG2003|consen  348 ---IKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN  424 (840)
T ss_pred             ---cCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence               00001122222222111     111110  1111111111111111111110                     0011


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          380 FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHG-LRR-EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       380 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  457 (701)
                      -...|.++|+++.|.+++.-+.+..-..-...-+.|-.. |.+ ..++..|...-+..+... .-++.....-.......
T Consensus       425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n  503 (840)
T KOG2003|consen  425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN  503 (840)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence            123477899999999999888765322222222222222 222 346677777666655443 33444443333444568


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM  537 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  537 (701)
                      |++++|...|++.+..........|| +.-.+-..|++++|+..|-.+..- +..+..+...+...|....+...|++++
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            99999999999998873332333333 334567889999999999887542 2346677778888999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      .+.... ++.|+..+..|...|-+.|+-..|.+.+-.-....|. ..+...|+.-|....-+++|+.+|+++.-  +.|+
T Consensus       582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~  658 (840)
T KOG2003|consen  582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN  658 (840)
T ss_pred             HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence            888765 6778999999999999999999999988877777777 67888888888888999999999998743  5889


Q ss_pred             HHHHHHHHHH-HHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          617 ASTCHVLVES-YLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       617 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      ..-|..++.. +.+.|+++.|+++|+..+++-+. |..+..-+.+.+...|- .+|.++-.++.+
T Consensus       659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl-~d~key~~klek  721 (840)
T KOG2003|consen  659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL-KDAKEYADKLEK  721 (840)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc-hhHHHHHHHHHH
Confidence            9999888875 55679999999999999985333 67888888888877775 456666665544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1.2e-13  Score=130.62  Aligned_cols=366  Identities=15%  Similarity=0.160  Sum_probs=218.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037695          138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTA  217 (701)
Q Consensus       138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  217 (701)
                      |.+..+|..+|.++++-...+.|.+++.+........+..+||.+|.+-+-..    ..++..+|....+.||..|+|++
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence            45566788888888888888888888888777767778888888877644322    26777788777778888888888


Q ss_pred             HHHHHccCCHhHH----HHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhH-HHHHHHHchh----CCCCC----CHHHH
Q 037695          218 IHVLVVGNKLAKA----LRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKD-AIKLIDEMPL----KGCSP----DKVSY  284 (701)
Q Consensus       218 l~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----d~~~~  284 (701)
                      +++.++.|+++.|    .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..    +.++|    |..-|
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            8888888876544    4667778888888888888888888887776643 4444444332    22222    34456


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHH
Q 037695          285 YTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD---VVTYTAVVNGFCRVGELDQAKKM  361 (701)
Q Consensus       285 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~  361 (701)
                      ...++.|.+..+.+-|.++...+....+.       .            -+.|+   ...|..+....|.....+.....
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-------~------------~ig~~~~~~fYyr~~~~licq~es~~~~~~~  420 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNW-------K------------FIGPDQHRNFYYRKFFDLICQMESIDVTLKW  420 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCch-------h------------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777766666666555431110       0            01222   23456677777777788888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          362 LQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFF  441 (701)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~  441 (701)
                      |..|.-.-+-|+..+...++++....|.++-..+++..+...|...+.                +-..+++..|......
T Consensus       421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~----------------~l~eeil~~L~~~k~h  484 (625)
T KOG4422|consen  421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS----------------DLREEILMLLARDKLH  484 (625)
T ss_pred             HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH----------------HHHHHHHHHHhcCCCC
Confidence            888887767778888888888877778887777777777765422221                2222344444444333


Q ss_pred             CCHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C---CCHH
Q 037695          442 PTPVEINLLIQSLCRE-GKMDGA-KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-D---PDTV  515 (701)
Q Consensus       442 ~~~~~~~~li~~~~~~-g~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~---p~~~  515 (701)
                      |+...-..+-...+++ -++.++ ...-.++.+.  .......+.++-.+.+.|..++|.++|.-+.+.+- -   |...
T Consensus       485 p~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ln  562 (625)
T KOG4422|consen  485 PLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLN  562 (625)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchh
Confidence            3322111111111111 011111 1111223322  23344555556666677777777777776644331 1   2222


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKG  544 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~  544 (701)
                      ...-+++.-.+.+.+..|..+++-|...+
T Consensus       563 Am~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  563 AMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            23334444455566666666666665544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.2e-11  Score=117.10  Aligned_cols=465  Identities=12%  Similarity=0.090  Sum_probs=288.7

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 037695          143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNL-LICNTAIHVL  221 (701)
Q Consensus       143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~  221 (701)
                      .|-...+--...+++..|..+|+....-. ..+...|...+.+=.+...+..|..+++..+..  -|.+ ..|-..+..=
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence            34444444444556666777777666544 235566666666666777777777777776653  2322 2344444444


Q ss_pred             HccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 037695          222 VVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVR  301 (701)
Q Consensus       222 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~  301 (701)
                      -..|++..|.++|+...+.  .|+...|++.|+.-.+.+.++.|..+++...-.  .|+..+|.....-=-+.|....+.
T Consensus       152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR  227 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR  227 (677)
T ss_pred             HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence            4567777777777776654  677777777777777777777777777776643  577777766666666666666666


Q ss_pred             HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHH
Q 037695          302 DLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN--TVSYTA  379 (701)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~  379 (701)
                      .+|+.....                |..     -.-+...+.+....=.++..++.|.-+|+-.+++ ++.+  ...|..
T Consensus       228 ~VyerAie~----------------~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~  285 (677)
T KOG1915|consen  228 SVYERAIEF----------------LGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKK  285 (677)
T ss_pred             HHHHHHHHH----------------hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHH
Confidence            666655431                000     0012223444444444556677777777776664 2222  334444


Q ss_pred             HHHHHHhcCCHHHHHHH--------HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------
Q 037695          380 FLNGLCHNGKSLEAREM--------INTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPV------  445 (701)
Q Consensus       380 li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------  445 (701)
                      +...--+-|+.......        ++.+...+ +-|-.+|-..++.-...|+.+...++|+..+.+ ++|-..      
T Consensus       286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~R  363 (677)
T KOG1915|consen  286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRR  363 (677)
T ss_pred             HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence            44433344543333222        23333332 456667777777777778888888888887766 344221      


Q ss_pred             -HHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037695          446 -EINLL---IQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGF----CQKGDLEEALSLLDDMYLCKKDPDTVTY  517 (701)
Q Consensus       446 -~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~  517 (701)
                       .|.-+   +-.-....+++.+.++|+.+++. +|....||..+--.|    .++.++..|.+++-..+.  ..|...+|
T Consensus       364 YIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlF  440 (677)
T KOG1915|consen  364 YIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLF  440 (677)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHH
Confidence             11111   11113467888888888888875 555666665554444    457788888888877753  56788888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHH
Q 037695          518 TTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLC  593 (701)
Q Consensus       518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~  593 (701)
                      ...|..-.+.++++....+|++.++.+ |-+..+|......-...|+.+.|..+|+-+++. |.    ...|.+.++.=.
T Consensus       441 k~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q-p~ldmpellwkaYIdFEi  518 (677)
T KOG1915|consen  441 KGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ-PALDMPELLWKAYIDFEI  518 (677)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-cccccHHHHHHHhhhhhh
Confidence            888888888888888888888888865 556777877777777888888888888888764 33    235666677667


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------ChhhHHHHHHHHHh
Q 037695          594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYL-----NKG-----------IPLLAYKVACRMFN  645 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~  645 (701)
                      ..|.++.|..+++.+++..  +...+|.+++..-.     +.|           +...|..+|+++..
T Consensus       519 ~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  519 EEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             hcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            7888888888888888764  33446655554322     223           44567777776655

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=9.6e-12  Score=119.55  Aligned_cols=471  Identities=13%  Similarity=0.088  Sum_probs=348.6

Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChH-HHHHH
Q 037695          174 CRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVL-TYNCL  252 (701)
Q Consensus       174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l  252 (701)
                      .+...|......=...+++..|..+|+.+.... ..+...|-.-+.+=.++..+..|..+++.....  -|-+. .|---
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY  147 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence            355566666666667788889999999998765 677788888888888999999999999998875  34332 23333


Q ss_pred             HHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH
Q 037695          253 IKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQ  332 (701)
Q Consensus       253 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~  332 (701)
                      +.+--..|++..|.++|+.-...  .|+...|.+.|..=.+-+.++.|..++++.+-                       
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-----------------------  202 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-----------------------  202 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------------------
Confidence            44555689999999999998876  89999999999999999888888888888765                       


Q ss_pred             cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 037695          333 MGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH-G-CKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN--  408 (701)
Q Consensus       333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--  408 (701)
                        +.|++.+|--....=.+.|.+..+..+|....+. | -..+...+.+...--.++..++.|.-+|.-.+..- +.+  
T Consensus       203 --~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~ra  279 (677)
T KOG1915|consen  203 --VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRA  279 (677)
T ss_pred             --ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccH
Confidence              5699999999998889999999999999988763 1 01123344455444456678889999998887753 333  


Q ss_pred             hhhHHHHHHHHHhcCCH---HHHHH-----HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 037695          409 AITYSVVMHGLRREGKL---SEACD-----VVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV-  479 (701)
Q Consensus       409 ~~~~~~ll~~~~~~g~~---~~A~~-----~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-  479 (701)
                      ...|..+...--+-|+.   +.++-     -++.++..+ +.|-.+|--.++.-...|+.+...++|+.+... ++|-. 
T Consensus       280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~e  357 (677)
T KOG1915|consen  280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASE  357 (677)
T ss_pred             HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhH
Confidence            33444444333344543   33332     233444443 567778888888888899999999999999886 55522 


Q ss_pred             -HHHHHHH--------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCC
Q 037695          480 -VNFTSLI--------RGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL----SKNGRVEEATELMMKMLSKGLV  546 (701)
Q Consensus       480 -~~~~~ll--------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~  546 (701)
                       ..|.-.|        -.-....+.+.+.++|+..++. ++....||..+=-.|    .+..+...|.+++...+  |..
T Consensus       358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~c  434 (677)
T KOG1915|consen  358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKC  434 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccC
Confidence             1122111        1123468899999999999883 455566665543333    46788999999998876  568


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHH
Q 037695          547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTCHVLV  624 (701)
Q Consensus       547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~  624 (701)
                      |...++...|..-.+.++++....++++.+.-+|. -.+|...+..=...|+.+.|..+|.-+++.+. ......|...|
T Consensus       435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI  514 (677)
T KOG1915|consen  435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI  514 (677)
T ss_pred             CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence            99999999999999999999999999999999987 67888888888899999999999999987542 22245677778


Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHcC
Q 037695          625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI-----LEG-----------KSEEADTLMLRFVERG  682 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~  682 (701)
                      ..-...|.++.|..+|+++++.  .+...++-..+.--.     +.|           ....|..+|+++....
T Consensus       515 dFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~  586 (677)
T KOG1915|consen  515 DFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL  586 (677)
T ss_pred             hhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence            8888899999999999999993  444445554443322     334           5677888888875543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.73  E-value=1.5e-13  Score=130.75  Aligned_cols=478  Identities=12%  Similarity=0.060  Sum_probs=312.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHH
Q 037695          143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAF-SYLMVAYSRAGKLRNAMYVLSMMQKAAVAP----NLLICNTA  217 (701)
Q Consensus       143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l  217 (701)
                      +...+...|..+....+|+..++-+.+...-|+.... ..+...+.+...+.+|++.|+.....-...    .+...+.+
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni  282 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI  282 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence            3445566677778888999999988887766665443 335566778889999999999887542111    22345555


Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCC------------CHHHHH
Q 037695          218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSP------------DKVSYY  285 (701)
Q Consensus       218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------d~~~~~  285 (701)
                      ...+.+.|+++.|+..|+...+.  .||..+--.|+-++..-|+-++..+.|..|...-..|            +....+
T Consensus       283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~  360 (840)
T KOG2003|consen  283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN  360 (840)
T ss_pred             CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence            66678999999999999998876  6887776666667778899999999999987543222            333222


Q ss_pred             HHH-----HHHHHcCCh--hHHHHHHHHHHhcCCCCCCC-CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 037695          286 TVM-----GYLCKEKRI--KEVRDLMEKMVNDSNLFHDQ-GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQ  357 (701)
Q Consensus       286 ~ll-----~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  357 (701)
                      .-|     .-+-+.++.  +.+.-.--.+.. .-+.|+- -..+=.++.+..-.-.  +.-...--.-...+.+.|+++.
T Consensus       361 eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~~  437 (840)
T KOG2003|consen  361 EAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIEG  437 (840)
T ss_pred             HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHH
Confidence            222     111111111  111111111111 0111110 0011111111111100  0000011112335789999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          358 AKKMLQQMYHHGCKPNTVSYTAFLNGLCH--NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREM  435 (701)
Q Consensus       358 a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m  435 (701)
                      |+++++-+.+..-+.-...-+.|...+.-  ..++..|..+-+...... .-+......-.......|++++|.+.|++.
T Consensus       438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea  516 (840)
T KOG2003|consen  438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA  516 (840)
T ss_pred             HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence            99999988875433333333333333222  345777777666554321 122222222222334578999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695          436 VKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV  515 (701)
Q Consensus       436 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  515 (701)
                      +...-.-. ..+-.+.-.+-+.|++++|+..|-++... +..+..+...+...|-...+...|++++.+.... ++.|+.
T Consensus       517 l~ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~  593 (840)
T KOG2003|consen  517 LNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA  593 (840)
T ss_pred             HcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence            87742222 22223344567889999999999876543 3347777888889999999999999999887653 566788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHH-HHHh
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIE-NLCS  594 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~-~~~~  594 (701)
                      ....|...|-+.|+-..|.+.+-.--.. ++.+..+...|..-|....-+++|+.+|+++.-.+|+..-|..++. ++.+
T Consensus       594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr  672 (840)
T KOG2003|consen  594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR  672 (840)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence            9999999999999999999876544333 5778899988998899999999999999999989999888877654 5557


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          595 FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                      .|++.+|..+|+...+ .++-|..++.-|++.+...|
T Consensus       673 sgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  673 SGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             cccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence            8999999999999876 45668888888887776666

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.3e-13  Score=131.14  Aligned_cols=223  Identities=15%  Similarity=0.097  Sum_probs=171.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          454 LCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEA  533 (701)
Q Consensus       454 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  533 (701)
                      +.-.|+.-.|..-|+..+.....+ ...|--+..+|....+.++.++.|+...... +-++.+|-.-.+.+.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence            344678888888888888764332 2336667778888899999999999888754 34567777777778888899999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      ..-|++.+... +-+...|..+..+..+.+++++++..|++...+.|+ +..|+..+.++...+++++|.+.|+.++++.
T Consensus       414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            99999988764 445667777777778889999999999999999888 8889999999999999999999999998875


Q ss_pred             CCC-----CHH--HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          613 SKA-----DAS--TCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       613 ~~~-----~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      +..     ++.  +-..++-.-. .+++..|+.++.++.+  +.|.. ..|..++...++.|+.++|+++|++.....
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            431     122  2222222222 3788899999999988  55554 678889999999999999999998876644

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.5e-12  Score=123.42  Aligned_cols=348  Identities=11%  Similarity=0.029  Sum_probs=242.3

Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hh
Q 037695          334 GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNA--IT  411 (701)
Q Consensus       334 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~  411 (701)
                      +..-|...+-...-.+.+.|....|+..|...... .+..-..|..|....   .+.+.+..    ... +.+.+.  ..
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~----l~~-~l~~~~h~M~  229 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSI----LVV-GLPSDMHWMK  229 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHH----HHh-cCcccchHHH
Confidence            33445555544555567788899999998887754 233444444443322   22222222    221 112111  11


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 037695          412 YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC--AVNVVNFTSLIRGF  489 (701)
Q Consensus       412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~  489 (701)
                      =-.+..++....+.++++.-...+...|++.+...-+....+.-...+++.|+.+|+++.+...  -.|..+|..++-.-
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~  309 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence            1124456666778888888888888888877776666666677788899999999999988721  11456666555332


Q ss_pred             HhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          490 CQKGDLE-EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDL  568 (701)
Q Consensus       490 ~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A  568 (701)
                      -.+.++. -|..+++ +    -+-.+.|..++.+-|+-.++.++|..+|++.++.+ +-....|+.+.+-|....+...|
T Consensus       310 ~~~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA  383 (559)
T KOG1155|consen  310 NDKSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA  383 (559)
T ss_pred             hhhHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence            2211111 1222211 1    12334566777788888899999999999999875 44567788888999999999999


Q ss_pred             HHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695          569 LKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       569 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  647 (701)
                      ++-+++++..+|. -.+|-.|+.+|...+...=|+-.|+++.+..+ -|+..|.+|+.+|.+.++.++|++.|+++..-|
T Consensus       384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            9999999999887 78999999999999999999999999988764 488999999999999999999999999998854


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhhhhh
Q 037695          648 LIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVF  698 (701)
Q Consensus       648 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  698 (701)
                      -. +...+..+++.|-+.++.++|..+|++.++.....-....+....+.|
T Consensus       463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f  512 (559)
T KOG1155|consen  463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF  512 (559)
T ss_pred             cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            33 557888899999999999999999999988553223334444444444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.67  E-value=4.1e-16  Score=153.08  Aligned_cols=262  Identities=23%  Similarity=0.220  Sum_probs=112.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          414 VVMHGLRREGKLSEACDVVREMVKKG-FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK  492 (701)
Q Consensus       414 ~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  492 (701)
                      .+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            44667778888888888886554443 2334444555566667788888888888888776433 55566666666 688


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTVVTYRTVIHRYCQVGRVEDLLKL  571 (701)
Q Consensus       493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~  571 (701)
                      +++++|.+++....+.  .++...+..++..+...++++++..+++.+... ..+++...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999998877653  356667778888899999999999999997754 2356777888888999999999999999


Q ss_pred             HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695          572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP  650 (701)
Q Consensus       572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  650 (701)
                      ++++++..|+ ..+...++..+...|+.+++..++....+.. +.|+..+..++.+|...|++++|+..+++..+.+.. 
T Consensus       169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-  246 (280)
T PF13429_consen  169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-  246 (280)
T ss_dssp             HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence            9999999998 7788899999999999999888888887764 456677888999999999999999999999984333 


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          651 DLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      |+.+...++.++...|+.++|..++.++.+.
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             -HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            6788889999999999999999999887653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=9.3e-12  Score=119.56  Aligned_cols=305  Identities=10%  Similarity=-0.006  Sum_probs=222.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcC
Q 037695          381 LNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGF--FPTPVEINLLIQSLCREG  458 (701)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g  458 (701)
                      ..++....+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.++..  -.|..+|+.++-.-....
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence            345555567777777777777777655555555555556677888888888888888731  124456666553322211


Q ss_pred             CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          459 KMD-GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM  537 (701)
Q Consensus       459 ~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  537 (701)
                      .+. .|..++. +    .+--+.|...+.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|...++...|++-|
T Consensus       314 kLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY  387 (559)
T KOG1155|consen  314 KLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY  387 (559)
T ss_pred             HHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence            111 1111111 1    12245567777888888899999999999998854 334577888889999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      ++.++.. |-|-..|..|..+|.-.+...=|+-+|+++.+..|+ ...|.+|+.+|.+.++.++|++.|..++..+ ..+
T Consensus       388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte  465 (559)
T KOG1155|consen  388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE  465 (559)
T ss_pred             HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence            9999864 668889999999999999999999999999998888 7899999999999999999999999998876 447


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695          617 ASTCHVLVESYLNKGIPLLAYKVACRMFNR----N-LIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                      ...+..|+..|-+.++..+|..+|++.++.    | +.|. ..+..-++.-+.+.+++++|..+......-++.......
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~  545 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA  545 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence            788889999999999999999999888772    2 2332 244444667778899999999988887776543333333


Q ss_pred             HHh
Q 037695          691 HLQ  693 (701)
Q Consensus       691 ~l~  693 (701)
                      .+|
T Consensus       546 LlR  548 (559)
T KOG1155|consen  546 LLR  548 (559)
T ss_pred             HHH
Confidence            333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.9e-12  Score=124.57  Aligned_cols=280  Identities=13%  Similarity=0.042  Sum_probs=170.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695          373 NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQ  452 (701)
Q Consensus       373 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~  452 (701)
                      ++........-+...+++.+..++++...+.. +++...+..-|.++...|+..+...+-.+|.+. .|..+.+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence            33344444555566677777777777766643 555556666666666777766666666666665 2445566666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          453 SLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEE  532 (701)
Q Consensus       453 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  532 (701)
                      .|...|+..+|.++|.+..... +.-...|-.+.+.|+-.|..+.|+..+....+. ++-...-+-.+.--|.+.++.+-
T Consensus       321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence            6666677777777777665442 112445666677777777777777766655442 11111112223344666677777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C----hhHHHHHHHHHHhcCCHHHHHHH
Q 037695          533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK----C----RTAYNQVIENLCSFGYLEEAGKI  604 (701)
Q Consensus       533 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~----~~~~~~l~~~~~~~g~~~~A~~~  604 (701)
                      |.++|.+..... |-|+..++-+.-.....+.+.+|..+|+..+..-+    .    .++++.|+.+|.+.+++++|+..
T Consensus       399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            777776666542 44566666666656666677777777766653311    1    34566677777777777777777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695          605 LGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE  660 (701)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  660 (701)
                      +++++... +.+..++.+++..|...|+++.|++.|.+.+-  +.|+..+...++.
T Consensus       478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK  530 (611)
T ss_pred             HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence            77777655 33666777777777777777777777777766  6666655554444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.66  E-value=7.1e-10  Score=110.95  Aligned_cols=543  Identities=13%  Similarity=0.076  Sum_probs=331.5

Q ss_pred             HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695          112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK  191 (701)
Q Consensus       112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  191 (701)
                      ++++-.+++.-.-.+.|+.+.+..+.......|...+......+-++-+..+++...+    .+|..-+-.|..++..++
T Consensus       109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~  184 (835)
T KOG2047|consen  109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDR  184 (835)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccc
Confidence            4555566666666777776666555444455788888888888888899999988876    456667788888889999


Q ss_pred             hhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCCHh---HHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcC
Q 037695          192 LRNAMYVLSMMQKA------AVAPNLLICNTAIHVLVVGNKLA---KALRFLERMQLAGITPN--VLTYNCLIKGYCDLH  260 (701)
Q Consensus       192 ~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g  260 (701)
                      +++|.+.+......      ..+.+-..|..+....++.-+.-   ....+++.+...  -+|  -..|++|.+.|.+.|
T Consensus       185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g  262 (835)
T KOG2047|consen  185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG  262 (835)
T ss_pred             hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence            99999988877532      12445556777666666553322   233445554433  344  346899999999999


Q ss_pred             ChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcC------
Q 037695          261 RIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMG------  334 (701)
Q Consensus       261 ~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~------  334 (701)
                      .+++|..+|++....  ......|..+.+.|+.-....-+..+ +......+-..+.-+++-.+.-|+.+...+      
T Consensus       263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs  339 (835)
T KOG2047|consen  263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS  339 (835)
T ss_pred             hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence            999999999988765  34556677777777653221111111 100000111112234445555555554432      


Q ss_pred             -----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695          335 -----CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN------TVSYTAFLNGLCHNGKSLEAREMINTSEEE  403 (701)
Q Consensus       335 -----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  403 (701)
                           -+.++..|..-+.  +..|+..+....|.+.... +.|.      ...|..+...|-.+|+++.|..+|++..+.
T Consensus       340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence                 1123334433332  3356667777777777653 2221      345778888888899999999999888775


Q ss_pred             CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------C------CHHHHHHHHHHHHhcCCHHHH
Q 037695          404 WWTPN---AITYSVVMHGLRREGKLSEACDVVREMVKKGFF-----------P------TPVEINLLIQSLCREGKMDGA  463 (701)
Q Consensus       404 ~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~~~~li~~~~~~g~~~~a  463 (701)
                      ..+--   ..+|..-...-.+..+++.|+.+++......-.           +      +...|...++.--..|-++..
T Consensus       417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest  496 (835)
T KOG2047|consen  417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST  496 (835)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            43211   233444445555677888888887766543111           1      123455556666667888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHH
Q 037695          464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSK---NGRVEEATELMMK  539 (701)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~  539 (701)
                      ..+|+.+.+..+. ++.........+-.+.-++++.++|++-...-..|+. ..|+..+.-+.+   ..+.+.|..+|++
T Consensus       497 k~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq  575 (835)
T KOG2047|consen  497 KAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ  575 (835)
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            9999988887544 2222222233344566688888888876654444554 356666555543   3468889999999


Q ss_pred             HHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          540 MLSKGLVPTVVTYRTVI--HRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       540 m~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      .++ |++|...-+..|+  ..--+.|....|+.+++++...-+.   ..+|+..+.-....=-+.....+|+++++.-  
T Consensus       576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--  652 (835)
T KOG2047|consen  576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--  652 (835)
T ss_pred             HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC--
Confidence            988 6666533222222  2223568888899999987765433   3456655544333222344566777777652  


Q ss_pred             CCHH---HHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHH
Q 037695          615 ADAS---TCHVLVESYLNKGIPLLAYKVACRMFN-RNLIPDLKLCKKVSERLILEGKSEE  670 (701)
Q Consensus       615 ~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~  670 (701)
                      |+..   .+--+...=++.|..+.|..+|.-..+ .++..+...|...-.-=+++|+-+.
T Consensus       653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT  712 (835)
T KOG2047|consen  653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT  712 (835)
T ss_pred             ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence            3332   233445566778888888888876655 2334445667766666677787443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.65  E-value=1.1e-12  Score=134.77  Aligned_cols=284  Identities=10%  Similarity=0.053  Sum_probs=180.6

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 037695          387 NGKSLEAREMINTSEEEWWTPNAIT-YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEIN--LLIQSLCREGKMDGA  463 (701)
Q Consensus       387 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a  463 (701)
                      .|+++.|.+.+....+..  +++.. |.....+..+.|+++.|...+.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            466666666665544431  12222 222233346667777777777776654  34433222  224556667777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 037695          464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-------VTYTTIIDALSKNGRVEEATEL  536 (701)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~  536 (701)
                      ...++.+.+.. |-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            77777776653 445666666777777777777777777777765543222       1222333333333444555555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          537 MMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       537 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      ++.+... .+.++.....+..++...|+.++|.+.+++..+..|++...  ++......++.+++.+.+++.++..+ -|
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~  327 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DT  327 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CC
Confidence            5554332 34567777778888888888888888888887765554322  22233345788888888888877653 36


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      +..+..++..+...|++.+|.+.|+++.+  ..|+...+..++.++.+.|+.++|..+|++....
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66777788888888888888888888887  6777777778888888888888888888777553

>TIGR00540 hemY_coli hemY protein

Probab=99.65  E-value=1.1e-12  Score=135.67  Aligned_cols=289  Identities=10%  Similarity=0.047  Sum_probs=193.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 037695          386 HNGKSLEAREMINTSEEEWWTPNA-ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTP--VEINLLIQSLCREGKMDG  462 (701)
Q Consensus       386 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~  462 (701)
                      ..|+++.|.+.+....+.  .|+. ..+-....+..+.|+.+.|...+.+..+..  |+.  .........+...|+++.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence            457777777777666554  2332 233344556666777777777777776542  332  233334666677788888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHH
Q 037695          463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT-TIID---ALSKNGRVEEATELMM  538 (701)
Q Consensus       463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~  538 (701)
                      |...++.+.+.. |-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..   .+...+..+.+...+.
T Consensus       172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            888887777763 446667777778888888888888888888776543 322221 1111   1122333333344555


Q ss_pred             HHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          539 KMLSKG---LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA---YNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       539 ~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      .+.+..   .+.++..+..++..+...|+.++|.+.+++.++..|+...   ...........++.+.+.+.+++.++..
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            555432   1237788888888999999999999999999988887432   1112222234577888888888888765


Q ss_pred             CCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          613 SKADA--STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       613 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      +. |+  ....++++.+.+.|++++|.+.+++.......|+...+.+++..+.+.|+.++|.+++++....
T Consensus       330 p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       330 DD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             CC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33 55  6677899999999999999999995333336788877889999999999999999999887543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.6e-11  Score=120.98  Aligned_cols=268  Identities=13%  Similarity=0.055  Sum_probs=140.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 037695          338 DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMH  417 (701)
Q Consensus       338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  417 (701)
                      +......-.+-|...+++.+..++...+.+.. +++...+..-|.++...|+..+-..+=.++.+. .+....+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence            33444444455555566666666666655542 334444444455555555555555555555543 2444555666665


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEE  497 (701)
Q Consensus       418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  497 (701)
                      -|...|+..+|.+.|.+..... +.-...|..+...|+-.|.-+.|...+..+.+. ++-...-+--+.--|.+.++.+.
T Consensus       321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence            5555666666666665544432 112334555556666666666666665555443 11111112223334555566666


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLV----PTVVTYRTVIHRYCQVGRVEDLLKL  571 (701)
Q Consensus       498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~  571 (701)
                      |.++|.+..... +-|+..++-+.-.....+.+.+|..+|+..+..  .+.    --..+++.|.++|.+.+.+++|+..
T Consensus       399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            666666555421 233444555554445555666666666555421  000    1123455556666666666666666


Q ss_pred             HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      +++.+...|. ..++.+++.+|...|+++.|+..|.+++-
T Consensus       478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            6666655554 55566666666666666666666666554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=1.6e-13  Score=137.84  Aligned_cols=287  Identities=10%  Similarity=0.022  Sum_probs=217.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          389 KSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKG--FFPTPVEINLLIQSLCREGKMDGAKKF  466 (701)
Q Consensus       389 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~  466 (701)
                      +..+|...|..+... +.-.......+..+|...+++++|..+|+.+.+..  ..-+..+|.+.+.-+-+    +-+..+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            346777777774443 23333555667778888888888888888887752  12245566666654432    112222


Q ss_pred             HH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695          467 MQ-ECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKG  544 (701)
Q Consensus       467 ~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  544 (701)
                      +. .+.+. .+..+.+|.++.++|.-+++++.|++.|++..+  +.| ...+|+.+..-+.....+|.|...|+..+...
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            22 22222 355788999999999999999999999999887  455 56788888888888999999999998887532


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          545 LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       545 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                       +-+-.+|.-+.-.|.+.++++.|+-.|+++++.+|. ..+...++..+.+.|+.++|+++++++...+++ |+..-...
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~  563 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR  563 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence             223445566677889999999999999999999998 567778888899999999999999999887755 66666678


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          624 VESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      +..+...+++++|+..++++.+  +.|+. .++..++.+|.+.|+.+.|+.-|.=+.+..|+...
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            8888999999999999999988  77765 78888899999999999999999888888775544

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=3.2e-12  Score=132.15  Aligned_cols=288  Identities=14%  Similarity=0.103  Sum_probs=211.2

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHH
Q 037695          350 CRVGELDQAKKMLQQMYHHGCKPNT-VSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI--TYSVVMHGLRREGKLS  426 (701)
Q Consensus       350 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~  426 (701)
                      ...|+++.|.+.+....+.  .|+. ..+-....+....|+++.|..++.+..+..  |+..  ........+...|+++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence            4578999999999887765  3443 333444567778899999999998887653  4442  3334577788899999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHH
Q 037695          427 EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFT-SLIRG---FCQKGDLEEALSLL  502 (701)
Q Consensus       427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~---~~~~g~~~~A~~~~  502 (701)
                      .|...++.+.+.. |-++..+..+...+...|+++.|..++..+.+.+.. +...+. .-..+   ....+..+.+...+
T Consensus       171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999998885 556778888899999999999999999999887644 333221 11111   12233333334455


Q ss_pred             HHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          503 DDMYLCKK---DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT--Y-RTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       503 ~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      ..+.....   +.+...+..+...+...|+.++|.+++++..+..  |+...  + ....-.....++.+.+.+.+++..
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            55544321   1377888889999999999999999999999864  33331  1 111122334578899999999999


Q ss_pred             hcCCC-h--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          577 SKQKC-R--TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       577 ~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +..|+ +  ....++++.+.+.|++++|.+.|+++......|++..+..++..+.+.|+.++|.+++++.+.
T Consensus       327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99888 5  566799999999999999999999644444578888888999999999999999999998765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.61  E-value=5.2e-12  Score=129.82  Aligned_cols=220  Identities=12%  Similarity=0.062  Sum_probs=112.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 037695          418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV-------VNFTSLIRGFC  490 (701)
Q Consensus       418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~  490 (701)
                      .+...|+++.|...++.+.+.. +-++..+..+...|.+.|+++.|..++..+.+.+..++.       ..|..++....
T Consensus       162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~  240 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM  240 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444442 223344444444444444444444444444443222111       12222233333


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695          491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLK  570 (701)
Q Consensus       491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  570 (701)
                      ...+.+...++++.+.+. .+.+......+..++...|+.++|..++++..+.  +|+....  ++.+....++.+++++
T Consensus       241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~  315 (398)
T PRK10747        241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK  315 (398)
T ss_pred             HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence            333444444555444322 1334555566666666666666666666666552  3444221  1222334466666666


Q ss_pred             HHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          571 LLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       571 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+++..+.+|+ +..+..++..+.+.+++++|...|+++++.  .|+...+..+...+.+.|+.++|..++++.+.
T Consensus       316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66666666666 445556666666666666666666666653  45556666666666666666666666666544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=1.1e-14  Score=143.01  Aligned_cols=261  Identities=15%  Similarity=0.168  Sum_probs=95.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          379 AFLNGLCHNGKSLEAREMINTSEEEW-WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       379 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  457 (701)
                      .+...+.+.|++++|++++....... .+.+...|..+.......++++.|...++++...+ +-++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            33555556666666666664433322 12233334444445555666777777777776654 2244455555555 566


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPDTVTYTTIIDALSKNGRVEEATEL  536 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~  536 (701)
                      +++++|..++....+.  .++...+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|..+
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777776665443  2355556667777777777777777777765422 234566677777777788888888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          537 MMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA  615 (701)
Q Consensus       537 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  615 (701)
                      +++.++.. |.|......++..+...|+.+++.++++......|. +..+..++.+|...|+.++|..+++++.+.. +.
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~  246 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD  246 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence            88877753 335666777777777778888777777777666444 5566777788888888888888888877755 33


Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          616 DASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      |+.....++.++...|+.++|..+..++.+
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            777777788888888888888877776654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.56  E-value=6.8e-09  Score=104.12  Aligned_cols=512  Identities=12%  Similarity=0.083  Sum_probs=323.8

Q ss_pred             HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC------CCCCHHHHHHHHH
Q 037695          111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG------IECRPEAFSYLMV  184 (701)
Q Consensus       111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~  184 (701)
                      +...+.+.+-|+-++++++...+     .++..-+-.+..+.+.+++++|.+.+.......      .+.+...|..+-.
T Consensus       144 yl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd  218 (835)
T KOG2047|consen  144 YLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD  218 (835)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence            45566667788888888875543     344557777889999999999999998876432      2335556766666


Q ss_pred             HHHHcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 037695          185 AYSRAGKLRN---AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR  261 (701)
Q Consensus       185 ~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  261 (701)
                      ..++..+.-.   ...+++.+...-...=...|++|...|.+.|.+++|..+|++....  ..++.-|..+.+.|+.-..
T Consensus       219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE  296 (835)
T KOG2047|consen  219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEE  296 (835)
T ss_pred             HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHH
Confidence            6665544332   3334444443211222358999999999999999999999998765  3455667777777765332


Q ss_pred             hhHHHHHHHHch-hCCCCCCHHHHHHHHHH---------------HHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHH
Q 037695          262 IKDAIKLIDEMP-LKGCSPDKVSYYTVMGY---------------LCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKE  325 (701)
Q Consensus       262 ~~~A~~~~~~m~-~~g~~pd~~~~~~ll~~---------------~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~  325 (701)
                      -.-+..+ +... +.|-+-+...+...+..               ++++ +...+.+..++.      ....|+..+-..
T Consensus       297 ~~~~~~m-e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ-n~~nV~eW~kRV------~l~e~~~~~~i~  368 (835)
T KOG2047|consen  297 SCVAAKM-ELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ-NPHNVEEWHKRV------KLYEGNAAEQIN  368 (835)
T ss_pred             HHHHHHH-hhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc-CCccHHHHHhhh------hhhcCChHHHHH
Confidence            2111111 1011 11111122222111111               1111 111111111110      111266777777


Q ss_pred             HHHHHHHcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 037695          326 LVNQMSQMGCIPD------VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN---TVSYTAFLNGLCHNGKSLEAREM  396 (701)
Q Consensus       326 ~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~  396 (701)
                      .+.+..+. +.|.      ...|..+...|-..|+++.|..+|.+..+-..+--   ..+|..-...-.+..+++.|+++
T Consensus       369 tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l  447 (835)
T KOG2047|consen  369 TYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL  447 (835)
T ss_pred             HHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            77777654 3332      24678888999999999999999999887543321   34566666677778889999998


Q ss_pred             HHHHHhCCCC-----------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          397 INTSEEEWWT-----------------PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK  459 (701)
Q Consensus       397 ~~~~~~~~~~-----------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  459 (701)
                      ++.....--.                 .+...|+..++..-..|-++....+++.+++..+. ++.......-.+-...-
T Consensus       448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~y  526 (835)
T KOG2047|consen  448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKY  526 (835)
T ss_pred             HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHH
Confidence            8876542111                 12334666666667788899999999999987643 44433333333445666


Q ss_pred             HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHH
Q 037695          460 MDGAKKFMQECLNKGCAVNV-VNFTSLIRGFCQ---KGDLEEALSLLDDMYLCKKDPDTVTYTTIID--ALSKNGRVEEA  533 (701)
Q Consensus       460 ~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A  533 (701)
                      ++++.++|++-...-..|++ ..|+..+.-+.+   ...++.|..+|++.++ |.+|...-+-.|+-  .--..|-...|
T Consensus       527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~a  605 (835)
T KOG2047|consen  527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHA  605 (835)
T ss_pred             HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            88899988876665334443 467777665554   3478999999999998 66665433322222  22356888999


Q ss_pred             HHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          534 TELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR---TAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       534 ~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      +.+|++.... +++.  ...|+..|.--...=-+.....+|+++++.-|+.   ...-..+..=++.|.++.|..++...
T Consensus       606 msiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~  684 (835)
T KOG2047|consen  606 MSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG  684 (835)
T ss_pred             HHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence            9999997664 4443  3356666654444334556778899998887773   34556677778999999999999877


Q ss_pred             HHc-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          609 LRT-ASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       609 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+. .++.+...|...-..=.++|+-    +.++.|++
T Consensus       685 sq~~dPr~~~~fW~twk~FEvrHGne----dT~keMLR  718 (835)
T KOG2047|consen  685 SQICDPRVTTEFWDTWKEFEVRHGNE----DTYKEMLR  718 (835)
T ss_pred             hhcCCCcCChHHHHHHHHHHHhcCCH----HHHHHHHH
Confidence            554 4566778888888888899983    35555555

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=5.7e-11  Score=114.99  Aligned_cols=220  Identities=13%  Similarity=0.087  Sum_probs=129.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695          386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKK  465 (701)
Q Consensus       386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  465 (701)
                      -.|+...|..-|+..+.....++ ..|-.+..+|....+.++....|....+.+ +-++.+|..-.+++.-.+++++|..
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence            34666667777776666532222 225556666777777777777777666654 4455566666666666666777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 037695          466 FMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-  544 (701)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-  544 (701)
                      =|++..... +-++..|-.+.-+..+.+++++++..|++..+. ++.-+..|+.....+...++++.|.+.|+..+... 
T Consensus       416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            776666652 334555555555556666677777777766553 34445566666666666677777777766666531 


Q ss_pred             ----CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          545 ----LVPTVVTY--RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       545 ----~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                          +..++..+  -.++-.- -.+++..|..+++++.+.+|. ..++..|+....+.|++++|+++|++...
T Consensus       494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                11111111  1111111 125666666666666666665 45666666666666666666666666543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.5e-11  Score=112.80  Aligned_cols=291  Identities=14%  Similarity=0.145  Sum_probs=222.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 037695          386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPT---PVEINLLIQSLCREGKMDG  462 (701)
Q Consensus       386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~  462 (701)
                      -+.+.++|..+|-+|.+.. +.+..+--+|.+.|.+.|..+.|+.+.+.+.+..-.+.   ......|.+-|...|-++.
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            3578899999999999843 33445566788999999999999999999887632221   1245667778889999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT----VTYTTIIDALSKNGRVEEATELMM  538 (701)
Q Consensus       463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~  538 (701)
                      |+.+|..+.+.+ ..-......|+..|-...+|++|+++-.++.+.+..+..    ..|.-|...+....+++.|..++.
T Consensus       126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999998753 224556778899999999999999999999886655443    245666677777889999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          539 KMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       539 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      +..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+|.  +.+...|..+|...|+.++....+.++.+....++
T Consensus       205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            998864 334445556778889999999999999999999988  67888999999999999999999999988654444


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCC
Q 037695          617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI---LEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~  683 (701)
                        .-..+...-....-.+.|..++.+-+.  -+|+...+..++....   ..|.+.+-...+.+|+..-.
T Consensus       284 --~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l  349 (389)
T COG2956         284 --AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL  349 (389)
T ss_pred             --HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence              334455544444456667766666666  5788877777776654   34667888888888876544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2e-12  Score=130.03  Aligned_cols=288  Identities=13%  Similarity=0.063  Sum_probs=225.5

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 037695          354 ELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEW--WTPNAITYSVVMHGLRREGKLSEACDV  431 (701)
Q Consensus       354 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~  431 (701)
                      +..+|+..|..+..+- .-.......+..+|...+++++|.++|+.+....  ...+...|++.+-.+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            4678888888855542 2233555677888999999999999999887643  12355567666655433    223333


Q ss_pred             H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695          432 V-REMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK  510 (701)
Q Consensus       432 ~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~  510 (701)
                      + +.++... +-.+.+|.++...|.-.++.+.|++.|++..+.. +....+|+.+.+-+.....+|.|...|+..+... 
T Consensus       409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-  485 (638)
T KOG1126|consen  409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-  485 (638)
T ss_pred             HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence            3 3444443 6678999999999999999999999999998862 2378899999999999999999999999986421 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI  589 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~  589 (701)
                      ..+...|-.|...|.+.++++.|.-.|++..+.+ |-+.+....+...+.+.|+.++|+++++++...+|. +-.-...+
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            1123345557788999999999999999999865 556777888889999999999999999999999887 44555678


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD  651 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  651 (701)
                      ..+...+++++|...++++.+.- +.+..++..++..|.+.|+.+.|+.-|..|.+.++++.
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            88899999999999999998865 33778889999999999999999999999988544443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.54  E-value=7.9e-11  Score=121.83  Aligned_cols=527  Identities=13%  Similarity=0.062  Sum_probs=274.9

Q ss_pred             hhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037695          132 DRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNL  211 (701)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  211 (701)
                      ....|..|+..+|.++|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+.           .|..
T Consensus        16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a   83 (1088)
T KOG4318|consen   16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA   83 (1088)
T ss_pred             HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence            456688999999999999999999999998 9998988888888899999999998888877665           6888


Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHch-hCCCCCCHHHHHHHHHH
Q 037695          212 LICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMP-LKGCSPDKVSYYTVMGY  290 (701)
Q Consensus       212 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~ll~~  290 (701)
                      .+|..|+.+|...|++.. .+..++           -.-.++..+...|--.....++..+. ..+.-||..+.   +..
T Consensus        84 Dtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---ill  148 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILL  148 (1088)
T ss_pred             hHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHH
Confidence            899999999999998765 222222           01111222233333333333333321 11223333221   111


Q ss_pred             HHHcCChhHHHHHHHHHHhcCCCCCC-------CCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          291 LCKEKRIKEVRDLMEKMVNDSNLFHD-------QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQ  363 (701)
Q Consensus       291 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  363 (701)
                      ....|.++.+.+++..+.......|.       .-...-..++....+...-.|+..+|..++.+-...|+++.|..++.
T Consensus       149 lv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~  228 (1088)
T KOG4318|consen  149 LVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY  228 (1088)
T ss_pred             HHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence            22223333333333222110000000       00111112222222221115889999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          364 QMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPT  443 (701)
Q Consensus       364 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~  443 (701)
                      .|.+.|.+.+..-|-.|+-+   .++..-+..++.-|.+.|+.|+..|+...+..+...|....+....    ....-.+
T Consensus       229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s----q~~hg~t  301 (1088)
T KOG4318|consen  229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS----QLAHGFT  301 (1088)
T ss_pred             HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc----chhhhhh
Confidence            99999988888877777765   7788888888999999999999999988887777755422211110    0000011


Q ss_pred             HHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC-CHH
Q 037695          444 PVEINLLIQSLCREGKMD-----GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK--KDP-DTV  515 (701)
Q Consensus       444 ~~~~~~li~~~~~~g~~~-----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~  515 (701)
                      ...+..+..+.....+++     .....+.+..-.|......+|...+.. ..+|+-++..++-..+....  ..+ ++.
T Consensus       302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~  380 (1088)
T KOG4318|consen  302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVD  380 (1088)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHH
Confidence            112222222211111111     111112222222333333334333222 22455555555555443211  111 122


Q ss_pred             HHHHHHHHHHhc----------------------CCHHHHHHHHHHHH------------hC----CCCC-------CHH
Q 037695          516 TYTTIIDALSKN----------------------GRVEEATELMMKML------------SK----GLVP-------TVV  550 (701)
Q Consensus       516 ~~~~li~~~~~~----------------------g~~~~A~~~~~~m~------------~~----~~~p-------~~~  550 (701)
                      .|..++.-|.+.                      ....+..++.....            ..    ...|       -..
T Consensus       381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird  460 (1088)
T KOG4318|consen  381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD  460 (1088)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence            333333322221                      11111111111110            00    0000       001


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA--SKADASTCHVLVESYL  628 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~  628 (701)
                      .-+.++..|+..-+..+++..-++... ..-...|..|+..++...+.+.|..+.++.....  ...|..-+..+.+.+.
T Consensus       461 i~~ql~l~l~se~n~lK~l~~~ekye~-~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~  539 (1088)
T KOG4318|consen  461 IANQLHLTLNSEYNKLKILCDEEKYED-LLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ  539 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence            122333333333333333332222211 1113456677777777777777777777664332  2334455666777777


Q ss_pred             hcCChhhHHHHHHHHHhCCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CchHHHHhh
Q 037695          629 NKGIPLLAYKVACRMFNRNL-IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQ--PKSEEHLQR  694 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~  694 (701)
                      +.+....+..+.+++.+.-. .|+ ..+...+.......|+.+.-.++.+-+...|...  |-...||+.
T Consensus       540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrk  609 (1088)
T KOG4318|consen  540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRK  609 (1088)
T ss_pred             HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeec
Confidence            77777777777776665211 222 2344455555666777776666666666666533  223444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.52  E-value=1.5e-10  Score=109.78  Aligned_cols=290  Identities=17%  Similarity=0.154  Sum_probs=141.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMI  397 (701)
Q Consensus       318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  397 (701)
                      |++.+|+++..+-.+.+-.| ...|..-+.+....|+.+.+-.++.+..+..-.++...+-+........|++..|..-+
T Consensus        98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            55555555555555444332 33344455566666777777777666665432344555555566666666666666666


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          398 NTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV  477 (701)
Q Consensus       398 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  477 (701)
                      .++.+.+ +.+.........+|.+.|++.....++..|.+.|.-.+...-..                            
T Consensus       177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------------------  227 (400)
T COG3071         177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------------------  227 (400)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence            6666554 33455556666666666666666666666666664443321000                            


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      ...+|+.++.-....+..+.-...|+..... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+   .. ..-
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~  302 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLI  302 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHH
Confidence            0122333333333333333333333333221 122233333444444445555555555444444443333   11 111


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA  636 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  636 (701)
                      .+.+.++...-++..++..+..|+ +..+.+|+..|.+.+.+.+|...|+.+++  ..|+..+|+.++.++.+.|++.+|
T Consensus       303 ~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         303 PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence            233444444444445544444444 34444555555555555555555554443  234455555555555555555555


Q ss_pred             HHHHHHHH
Q 037695          637 YKVACRMF  644 (701)
Q Consensus       637 ~~~~~~~~  644 (701)
                      .++.++.+
T Consensus       381 ~~~r~e~L  388 (400)
T COG3071         381 EQVRREAL  388 (400)
T ss_pred             HHHHHHHH
Confidence            55544444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.51  E-value=2.1e-10  Score=108.90  Aligned_cols=287  Identities=14%  Similarity=0.084  Sum_probs=196.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKF  466 (701)
Q Consensus       387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  466 (701)
                      .|++.+|+++..+..+.+- -....|..-..+-.+.|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            3555555555555444431 222334444445555556666655555555542233444444555555556666666666


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          467 MQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-------VTYTTIIDALSKNGRVEEATELMMK  539 (701)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~  539 (701)
                      ...+.+.+ +.++........+|.+.|++.....++..+.+.|.-.+.       .+|+.+++-....+..+.-...++.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            66555542 334555566666666666666666666666666544332       3577777766666666665566666


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695          540 MLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADAST  619 (701)
Q Consensus       540 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  619 (701)
                      .-.. .+-++..-.+++.-+.+.|+.++|.++..+.++.+-++. ... .....+-++...-++..++.++.. +-++..
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L  330 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLL  330 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence            5543 455677778888999999999999999999999876655 111 222346678888888888877765 347788


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          620 CHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      +..|+..|.+++.+.+|...++.+.+  ..|+...|..++..+.+.|+..+|.+.+++..-.
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999999999999988  8889999999999999999999999999988743

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.51  E-value=7.7e-11  Score=121.93  Aligned_cols=477  Identities=15%  Similarity=0.139  Sum_probs=286.1

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC
Q 037695          163 VLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGI  242 (701)
Q Consensus       163 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~  242 (701)
                      ++..+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++......++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            4556788899999999999999999999999888 9999988777888889999999988888877665           


Q ss_pred             CCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-----
Q 037695          243 TPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ-----  317 (701)
Q Consensus       243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----  317 (701)
                      .|...||..|..+|...|++.. .+..++           ....+...+...|.......++..+.-..+..|+.     
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il  147 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL  147 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH
Confidence            6788899999999999998765 222222           01111222222232222222222222212222222     


Q ss_pred             -----CcHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037695          318 -----GRIEEAKELVNQMSQMGC-IPDVVTYTAVVNGFCRVG-ELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKS  390 (701)
Q Consensus       318 -----g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  390 (701)
                           |.++.+++++..+....- .|..+    .++-+.... .+++-..+.+....   .|++.+|..+++.-...|++
T Consensus       148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~  220 (1088)
T KOG4318|consen  148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDV  220 (1088)
T ss_pred             HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCch
Confidence                 556666666655443211 11111    233333322 34444444444433   58999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          391 LEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQEC  470 (701)
Q Consensus       391 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  470 (701)
                      +.|..++.+|.+.|++.+..-|-.++-+   .+....+..+++-|...|+.|+..|+...+-.+...|....+..     
T Consensus       221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e-----  292 (1088)
T KOG4318|consen  221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE-----  292 (1088)
T ss_pred             hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc-----
Confidence            9999999999999998888877777666   78888899999999999999999999887777777554222221     


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcC-----CHH-----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          471 LNKGCAVNVVNFTSLIRGFCQKG-----DLE-----EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKM  540 (701)
Q Consensus       471 ~~~~~~~~~~~~~~ll~~~~~~g-----~~~-----~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  540 (701)
                         |.+ ...-+++-+..-.-.|     .++     -....+.+..-.|+......|...+.. ...|+-++..++-..|
T Consensus       293 ---~sq-~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l  367 (1088)
T KOG4318|consen  293 ---GSQ-LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQL  367 (1088)
T ss_pred             ---ccc-hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhh
Confidence               222 2222222222222222     111     111222222223444333444444332 2356555555555554


Q ss_pred             HhC--CCCC-CHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHhc-----------------
Q 037695          541 LSK--GLVP-TVVTYRTVIHRYCQV----------------------GRVEDLLKLLEKMLSK-----------------  578 (701)
Q Consensus       541 ~~~--~~~p-~~~~~~~l~~~~~~~----------------------g~~~~A~~~~~~~~~~-----------------  578 (701)
                      ..-  .+.+ +...|..++.-|.+.                      ....+..+++......                 
T Consensus       368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~  447 (1088)
T KOG4318|consen  368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERS  447 (1088)
T ss_pred             cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcc
Confidence            321  1111 222333333332221                      1111222222111100                 


Q ss_pred             -CCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--C
Q 037695          579 -QKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN--L  648 (701)
Q Consensus       579 -~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~  648 (701)
                       .|-       ....+.++..+++.-+..++...-++....-   =+..|..|+.-+......+.|.....+...+.  +
T Consensus       448 he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~  524 (1088)
T KOG4318|consen  448 HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESI  524 (1088)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhh
Confidence             010       1123345555666555666655544443322   22678889999999999999999988887643  2


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          649 IPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      ..+...+..+.+.+.+.+...++..+++.+.+.-...|
T Consensus       525 ~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~  562 (1088)
T KOG4318|consen  525 HLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP  562 (1088)
T ss_pred             hcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence            33557788899999999999999999999988544333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=1.6e-10  Score=106.25  Aligned_cols=288  Identities=15%  Similarity=0.137  Sum_probs=221.6

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhcCC
Q 037695          351 RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI------TYSVVMHGLRREGK  424 (701)
Q Consensus       351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~  424 (701)
                      -..+.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|+++.+.+.++   ||..      ....|..-|...|-
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence            4578899999999999842 224445567888999999999999999998874   5543      23345666888999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 037695          425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV----VNFTSLIRGFCQKGDLEEALS  500 (701)
Q Consensus       425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~  500 (701)
                      ++.|..+|..+.+.+ ..-......|+..|-...+|++|+.+-+++.+.+..+..    ..|.-|...+....+++.|..
T Consensus       123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~  201 (389)
T COG2956         123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE  201 (389)
T ss_pred             hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            999999999998865 345567888999999999999999999988887654432    335556666777889999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          501 LLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       501 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      ++.+..+.. +..+..-..+.+.+...|+++.|++.++...+++..--+.+...|..+|.+.|+.++...++.++.+..+
T Consensus       202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            999998754 2334445567788899999999999999999986555577888899999999999999999999999887


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 037695          581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK---GIPLLAYKVACRMFNR  646 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  646 (701)
                      .......+........-.+.|...+.+-++.  +|+...+..|+..-...   |...+.+..+..|+..
T Consensus       281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            7766666666665555566777666665553  68888888888765544   4456666777777663

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=5.3e-09  Score=97.31  Aligned_cols=441  Identities=12%  Similarity=0.113  Sum_probs=236.8

Q ss_pred             CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 037695          118 QADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMY  197 (701)
Q Consensus       118 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  197 (701)
                      .+|+.-|+.+.+...... -.....+---+..++.+.|++++|...+..+.... .++...+..|.-++.-.|.+.+|..
T Consensus        35 ~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   35 NRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             cccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence            356777777776543211 11112233446777888899999999888777643 4667777777777777888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHH-HccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCC
Q 037695          198 VLSMMQKAAVAPNLLICNTAIHVL-VVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKG  276 (701)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  276 (701)
                      +-.+.      |+....+.|+-.+ -+.++-++...+.+.+...     ..---+|.......-.+.+|++++...... 
T Consensus       113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-  180 (557)
T KOG3785|consen  113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-  180 (557)
T ss_pred             HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            76663      4444455444444 4667766666666555432     123334445555555778899998888765 


Q ss_pred             CCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 037695          277 CSPDKVSYYTVM-GYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL  355 (701)
Q Consensus       277 ~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  355 (701)
                       .|+-...|.-+ -+|.+..-++.+.+++...++                        .++-+....|..+....+.-.-
T Consensus       181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~------------------------q~pdStiA~NLkacn~fRl~ng  235 (557)
T KOG3785|consen  181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR------------------------QFPDSTIAKNLKACNLFRLING  235 (557)
T ss_pred             -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH------------------------hCCCcHHHHHHHHHHHhhhhcc
Confidence             45555555544 344566666666666665544                        1222333444433333332222


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037695          356 DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHN-----GKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACD  430 (701)
Q Consensus       356 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~  430 (701)
                      ..|.+-.+.+.+.+-..    | ..+.-+++.     ..-+.|++++--+.+.  -|  .....++--|.+.+++.+|..
T Consensus       236 r~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~  306 (557)
T KOG3785|consen  236 RTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAIS  306 (557)
T ss_pred             chhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHH
Confidence            23333344444332111    1 111222222     2335566655544432  12  122334455677777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 037695          431 VVREMVKKGFFPTPVEINLLIQSLCREG-------KMDGAKKFMQECLNKGCAVNVVN-FTSLIRGFCQKGDLEEALSLL  502 (701)
Q Consensus       431 ~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~  502 (701)
                      +.+++.    +.++.-|-.-.-.++..|       .+.-|...|+..-.++..-|... -.++..++.-..++++.+-.+
T Consensus       307 L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl  382 (557)
T KOG3785|consen  307 LCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL  382 (557)
T ss_pred             HHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            666542    222222221111222222       24455555655544443333222 233444555556677777777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695          503 DDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYR-TVIHRYCQVGRVEDLLKLLEKMLSKQKC  581 (701)
Q Consensus       503 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~  581 (701)
                      +.+...-...|...|| +.++++..|++.+|.++|-+.....++ |..+|. .|.++|.+.++...|..++-++-.....
T Consensus       383 nSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~  460 (557)
T KOG3785|consen  383 NSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSER  460 (557)
T ss_pred             HHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhH
Confidence            7666543333444433 566777777777777777666544333 334443 4456677777777776665444321111


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      ...+..++..|.+++.+=-|-+.|+.+....
T Consensus       461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  461 FSLLQLIANDCYKANEFYYAAKAFDELEILD  491 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence            3344455666667777766667777665543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.49  E-value=3.3e-09  Score=108.86  Aligned_cols=445  Identities=14%  Similarity=0.067  Sum_probs=243.6

Q ss_pred             CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHH
Q 037695          206 AVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYY  285 (701)
Q Consensus       206 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~  285 (701)
                      .+..+...|..|.-++.++|+++.+.+.|++.... ..-....|+.+...|...|.-..|..+++.-....-.|+..+-.
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            34568888888999999999999999999998754 23456678888889999999999999998876553335444333


Q ss_pred             HHH-HHHHH-cCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----------
Q 037695          286 TVM-GYLCK-EKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRV-----------  352 (701)
Q Consensus       286 ~ll-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------  352 (701)
                      .++ ..|.+ -+.++++.+.-.++..                .+..... .+  ....|..+.-+|...           
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~----------------~~~~~~~-~l--~~~~~l~lGi~y~~~A~~a~~~seR~  457 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAIS----------------LLGGQRS-HL--KPRGYLFLGIAYGFQARQANLKSERD  457 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHH----------------Hhhhhhh-hh--hhhHHHHHHHHHHhHhhcCCChHHHH
Confidence            333 33433 4555555555444433                1111111 11  222333333333321           


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037695          353 GELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVV  432 (701)
Q Consensus       353 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~  432 (701)
                      ....++++.+++..+.+.. |+...-.+.--|+..++++.|.....+..+.+-..+...|..+.-.+...+++.+|+.+.
T Consensus       458 ~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv  536 (799)
T KOG4162|consen  458 ALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV  536 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            1245778888888765422 333333344456677888899998888888766678888888888888888999998888


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC
Q 037695          433 REMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC--KK  510 (701)
Q Consensus       433 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~  510 (701)
                      +.....- ..|......-+..-..-++.+++......++..        |... ....+.++-....++...+.-.  ..
T Consensus       537 d~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~  606 (799)
T KOG4162|consen  537 DAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQP  606 (799)
T ss_pred             HHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccc
Confidence            8765531 112222222222223356666666555544432        0000 0001111112222222222110  00


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP--T------VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-  581 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-  581 (701)
                      .-...++..+..-....+  ..+..-.. |....+.|  +      ...|......+.+.++.++|...+.++....|. 
T Consensus       607 ~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~  683 (799)
T KOG4162|consen  607 TDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS  683 (799)
T ss_pred             cccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh
Confidence            111122222221111100  00000000 11111111  1      223444455566666666666666666665554 


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH--HHHHHHhCCCCCCHhhHHHHH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK--VACRMFNRNLIPDLKLCKKVS  659 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~  659 (701)
                      ...|...+..+...|..++|.+.|..++..++. ++....+++..+.+.|+...|..  ++..+++.++. +...|..++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG  761 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLG  761 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence            455555566666666667777666666665433 45556666666666666666655  66666663333 446666677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          660 ERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      ..+.+.|+.++|.+.|..+.+.....|
T Consensus       762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  762 EVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHccchHHHHHHHHHHHhhccCCC
Confidence            777777777777777766666654433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.47  E-value=1.3e-08  Score=104.68  Aligned_cols=410  Identities=13%  Similarity=0.019  Sum_probs=235.7

Q ss_pred             CCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHH
Q 037695          242 ITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIE  321 (701)
Q Consensus       242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~  321 (701)
                      +..+...|..|.-+....|+++.+.+.|++.... +.-....|+.+...+...|....|..+++.-..            
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~------------  385 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK------------  385 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc------------
Confidence            4556777777777788888888888888877643 233556677777777777776666666655433            


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc---------
Q 037695          322 EAKELVNQMSQMGCIPDVVTYTAVVNGFC-RVGELDQAKKMLQQMYHH--GC--KPNTVSYTAFLNGLCHN---------  387 (701)
Q Consensus       322 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~---------  387 (701)
                                ...-+++...+...-..|. +.+.+++++.+-.++...  +.  ......|..+.-+|...         
T Consensus       386 ----------~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se  455 (799)
T KOG4162|consen  386 ----------KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE  455 (799)
T ss_pred             ----------cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH
Confidence                      0001223334433334443 345666666666665541  11  11222333333333211         


Q ss_pred             --CCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          388 --GKSLEAREMINTSEEEWW-TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAK  464 (701)
Q Consensus       388 --g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  464 (701)
                        ....++.+.+++..+.+. .|++..|  +.--|+..++++.|....++..+.+-..+...|..+.-.+...+++..|+
T Consensus       456 R~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al  533 (799)
T KOG4162|consen  456 RDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL  533 (799)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence              112345555666554331 2222222  33345566677777777777777655666677777777777777777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 037695          465 KFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-  543 (701)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-  543 (701)
                      .+.+..... .+.|......-++.-..-++.++|+.+...+...  .-+..       .....++-....+....+.-. 
T Consensus       534 ~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~-------~~q~~~~~g~~~~lk~~l~la~  603 (799)
T KOG4162|consen  534 DVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEY-------GVQQTLDEGKLLRLKAGLHLAL  603 (799)
T ss_pred             HHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhh-------hHhhhhhhhhhhhhhcccccCc
Confidence            777766553 1222222222233333456666666666555431  00000       000111111222222222111 


Q ss_pred             -CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          544 -GLVPTVVTYRTVIHRYCQVG---RVEDLLKLLEKMLS-KQKC------RTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       544 -~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                       ...-...++..+.......+   ..+..   +..... .+|+      ...|...+..+.+.+..++|...+.++....
T Consensus       604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~  680 (799)
T KOG4162|consen  604 SQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID  680 (799)
T ss_pred             ccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence             11112344444433332111   11111   111111 1232      1345566777888899999998888887654


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCchH
Q 037695          613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADT--LMLRFVERGHIQPKSE  689 (701)
Q Consensus       613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~  689 (701)
                       +.....|...+..+...|...+|.+.|..++.  +.|+. .+...++.++.+.|+..-|..  ++..+.+.+|..|..=
T Consensus       681 -~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW  757 (799)
T KOG4162|consen  681 -PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW  757 (799)
T ss_pred             -hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence             55788888999999999999999999999998  77765 889999999999998888887  9999999998777654


Q ss_pred             HHH
Q 037695          690 EHL  692 (701)
Q Consensus       690 ~~l  692 (701)
                      +.|
T Consensus       758 ~~L  760 (799)
T KOG4162|consen  758 YYL  760 (799)
T ss_pred             HHH
Confidence            443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.46  E-value=2.8e-08  Score=100.23  Aligned_cols=464  Identities=13%  Similarity=0.070  Sum_probs=266.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 037695          179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD  258 (701)
Q Consensus       179 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  258 (701)
                      |..++..| ..+++...+++.+.+.+. .+-...+.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+..
T Consensus        11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen   11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence            44444444 445666666666666542 12233333333334445566777776666665543 3355667777666666


Q ss_pred             cCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcC
Q 037695          259 LHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD  338 (701)
Q Consensus       259 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~  338 (701)
                      ..++++|++.|......+ +-|...+.-+.-.-++.++++.....-..+.+                       . .+..
T Consensus        88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq-----------------------l-~~~~  142 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ-----------------------L-RPSQ  142 (700)
T ss_pred             hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----------------------h-hhhh
Confidence            677777777777776553 22444555444444444444444433333322                       1 1123


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 037695          339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHG-CKPNTVSYTAFL------NGLCHNGKSLEAREMINTSEEEWWTPNAIT  411 (701)
Q Consensus       339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  411 (701)
                      ...|..++.++.-.|+...|..+++...... -.|+...|....      ......|..+.|.+.+......  ..|-..
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla  220 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLA  220 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHH
Confidence            4566777777777888888888888777643 245555553322      2344567777777776655432  122222


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          412 -YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQS-LCREGKMDGAK-KFMQECLNKGCAVNVVNFTSLIRG  488 (701)
Q Consensus       412 -~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~  488 (701)
                       -.+-...+.+.+++++|..++..++..  .||...|...... +.+..+.-++. .+|....+.  .|....-.-+-..
T Consensus       221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlpls  296 (700)
T KOG1156|consen  221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLS  296 (700)
T ss_pred             HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHH
Confidence             233455677888888888888888877  4565555444443 33333333333 555555443  1111110001111


Q ss_pred             HHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHH--
Q 037695          489 FCQKGDL-EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKML----SKG----------LVPTVVT--  551 (701)
Q Consensus       489 ~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~~--  551 (701)
                      .....++ +..-+++..+.+.|+++-..   .+...|-.....+-..++.-.+.    ..|          -+|....  
T Consensus       297 vl~~eel~~~vdkyL~~~l~Kg~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt  373 (700)
T KOG1156|consen  297 VLNGEELKEIVDKYLRPLLSKGVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT  373 (700)
T ss_pred             HhCcchhHHHHHHHHHHHhhcCCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence            1111222 23334555666666554322   23222222121111111111111    111          1455444  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK  630 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  630 (701)
                      +..++..+-+.|+++.|..+++.++...|+ +..|..-++++..+|.+++|..+++++.+.+ .+|...-...+.-..+.
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA  452 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA  452 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence            445677788999999999999999998888 7788888999999999999999999998876 55777666777778889


Q ss_pred             CChhhHHHHHHHHHhCCCC--CCH----hhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          631 GIPLLAYKVACRMFNRNLI--PDL----KLCK--KVSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       631 g~~~~A~~~~~~~~~~~~~--p~~----~~~~--~l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      .+.++|.++...+.+.|..  .+.    -+|-  .-+.+|.+.|++-.|++-|..+-+
T Consensus       453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k  510 (700)
T KOG1156|consen  453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK  510 (700)
T ss_pred             cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999988886641  111    1111  225677888888888766655433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.44  E-value=3.2e-08  Score=99.82  Aligned_cols=459  Identities=14%  Similarity=0.106  Sum_probs=279.9

Q ss_pred             HHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 037695          112 CAVLRS--QADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA  189 (701)
Q Consensus       112 ~~~l~~--~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  189 (701)
                      -+++++  .+.+...+.+...+..  +++....+.....-.+...|+-++|....+.-.+.. ..+.+.|+.+.-.+...
T Consensus        12 ~~~lk~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen   12 RRALKCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhh
Confidence            344443  4778888888887766  446666677777777888899999999988877654 34778899888888888


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 037695          190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLI  269 (701)
Q Consensus       190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  269 (701)
                      .++++|+++|..+.+.+ +.|...+.-+.-.-++.|+++.....-..+.+.. +.....|..++.++.-.|+...|..++
T Consensus        89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999876 6777888877777778888888887777777652 345667888888999999999999999


Q ss_pred             HHchhCC-CCCCHHHHHHHHHHH------HHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695          270 DEMPLKG-CSPDKVSYYTVMGYL------CKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTY  342 (701)
Q Consensus       270 ~~m~~~g-~~pd~~~~~~ll~~~------~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  342 (701)
                      ++..+.. -.|+...|......+      .+.|..+.|.+.+...                       ... +.-....-
T Consensus       167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~-----------------------e~~-i~Dkla~~  222 (700)
T KOG1156|consen  167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN-----------------------EKQ-IVDKLAFE  222 (700)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh-----------------------hhH-HHHHHHHh
Confidence            9988653 346666665544333      3444444444433332                       211 11112222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHH
Q 037695          343 TAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLC-HNGKSLEAR-EMINTSEEEWWTPNAITYSVVMHGLR  420 (701)
Q Consensus       343 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~  420 (701)
                      .+-...+.+.+++++|..++..++..  .||...|...+..+. +-.+.-++. .+|....+.- +.....-..=+....
T Consensus       223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~  299 (700)
T KOG1156|consen  223 ETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLN  299 (700)
T ss_pred             hhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhC
Confidence            34456677888899999999888876  466666655544333 344444444 5555554431 111111111111111


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C------------CCCCHHHHHH--
Q 037695          421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK--G------------CAVNVVNFTS--  484 (701)
Q Consensus       421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~------------~~~~~~~~~~--  484 (701)
                      ...-.+..-.++..+.+.|+++--   ..+...|-.....+-..++...+...  |            -+|+...|+.  
T Consensus       300 ~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~  376 (700)
T KOG1156|consen  300 GEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF  376 (700)
T ss_pred             cchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence            122223344555666677765432   22222222211111111111111110  1            1555555554  


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695          485 LIRGFCQKGDLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG  563 (701)
Q Consensus       485 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  563 (701)
                      ++..|-..|+++.|...++....+  .|+. ..|..=.+.+...|.+++|..++++..+.. .||...-..-+.-..+.+
T Consensus       377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn  453 (700)
T KOG1156|consen  377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN  453 (700)
T ss_pred             HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence            456677788888888888887653  4553 345555567777888888888888887764 455544445566666778


Q ss_pred             CHHHHHHHHHHHHhcCCCh--------hHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 037695          564 RVEDLLKLLEKMLSKQKCR--------TAYNQV--IENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       564 ~~~~A~~~~~~~~~~~p~~--------~~~~~l--~~~~~~~g~~~~A~~~~~~~  608 (701)
                      +.++|.++.......+-+.        -+|..+  +.+|.+.|++..|.+=|..+
T Consensus       454 ~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  454 EIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             ccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            8888888777776554221        122222  45666676666665554443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.4e-09  Score=100.68  Aligned_cols=293  Identities=16%  Similarity=0.089  Sum_probs=209.1

Q ss_pred             HhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHH
Q 037695          350 CRVGELDQAKKMLQQMYHH-GCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAIT-YSVVMHGLRREGKLSE  427 (701)
Q Consensus       350 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~  427 (701)
                      +-.++...+...+-.+... -++-|......+...+...|+..+|...|++....  .|...+ .....-.+.+.|+.+.
T Consensus       207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~  284 (564)
T KOG1174|consen  207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ  284 (564)
T ss_pred             HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence            3345555555555444433 24456777888889999999999999999887754  343332 2223334567788888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL  507 (701)
Q Consensus       428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  507 (701)
                      ...+...+.... .-+...|-.-.......+++..|..+-++.++.. +.++..|-.-...+...|++++|.-.|+....
T Consensus       285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence            777777766542 2233334444445566788888888888887763 23455555555677888999999999988876


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCC-hhH
Q 037695          508 CKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVI-HRYC-QVGRVEDLLKLLEKMLSKQKC-RTA  584 (701)
Q Consensus       508 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~p~-~~~  584 (701)
                      .. +-+...|..|+.+|...|++.+|.-+-+..... ++.+..++..+. ..|. ...--++|.+++++.+...|. ..+
T Consensus       363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A  440 (564)
T KOG1174|consen  363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA  440 (564)
T ss_pred             cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence            32 346788999999999999999988877766554 345666666553 3332 233457899999999988888 778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      .+.++..+...|+.+.++.++++.+..  .||....+.|+..+...+.+++|++.|..++.  +.|+.
T Consensus       441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~  504 (564)
T KOG1174|consen  441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS  504 (564)
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence            888888888999999999999988764  67888888899999999999999999998888  56654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=9.3e-09  Score=95.75  Aligned_cols=452  Identities=11%  Similarity=0.047  Sum_probs=274.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 037695          148 LEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKL  227 (701)
Q Consensus       148 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  227 (701)
                      +.-+...+++..|..+++.-...+-+-...+-.-+..++.+.|++++|...|..+.... .++...+..|...+.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            56666778899999988876654433222333345556678899999999998887654 56666676676666677888


Q ss_pred             hHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 037695          228 AKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM  307 (701)
Q Consensus       228 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~  307 (701)
                      .+|..+-....     .++..-..|.+.-.+.++-++-..+-..+...     ...--+|.......-.+.+|.      
T Consensus       108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAI------  171 (557)
T KOG3785|consen  108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAI------  171 (557)
T ss_pred             HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHH------
Confidence            88887765432     33444555666666777766666555554322     122222333333333444444      


Q ss_pred             HhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          308 VNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAV-VNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH  386 (701)
Q Consensus       308 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  386 (701)
                                       +++..+...  .|.-...|.. .-+|.+..-++-+.++++-.+.. ++-++...|.......+
T Consensus       172 -----------------dvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR  231 (557)
T KOG3785|consen  172 -----------------DVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR  231 (557)
T ss_pred             -----------------HHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence                             444444443  3444444443 34567888888888888887765 23344455554444444


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695          387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE-----GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMD  461 (701)
Q Consensus       387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  461 (701)
                      .=.-..|..-...+...+-. .   | ..+.-+++.     ..-+.|++++-.+.+.  .|  ..-..|+-.|.+.+++.
T Consensus       232 l~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVq  302 (557)
T KOG3785|consen  232 LINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQ  302 (557)
T ss_pred             hhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHH
Confidence            32333344444444443211 1   1 123333443     2446788887776654  22  33445666788999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 037695          462 GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG-------DLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSKNGRVEEA  533 (701)
Q Consensus       462 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A  533 (701)
                      +|..+.+.+.-    .++.-|-.-.-.+...|       .+.-|.+.|+-.-.++..-|. .--..+..++.-..+++++
T Consensus       303 eA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddV  378 (557)
T KOG3785|consen  303 EAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDV  378 (557)
T ss_pred             HHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence            99988776532    12222222112222333       355566777666555544332 2345566777778889999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAY-NQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      +-+++.+...-...|...+ .+..+++..|++.+|.++|-++..... +..+| ..|+++|.+.++.+.|..++-++   
T Consensus       379 l~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---  454 (557)
T KOG3785|consen  379 LTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---  454 (557)
T ss_pred             HHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---
Confidence            9999998876444444444 478899999999999999977754331 23344 45788999999999998887664   


Q ss_pred             CCCCCHHHHHHH-HHHHHhcCChhhHHHHHHHHHhCCCCCCHhhH
Q 037695          612 ASKADASTCHVL-VESYLNKGIPLLAYKVACRMFNRNLIPDLKLC  655 (701)
Q Consensus       612 ~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  655 (701)
                      +.+.+....-.+ +.-|.+.+.+--|-+.|..+..  ..|++..|
T Consensus       455 ~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW  497 (557)
T KOG3785|consen  455 NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW  497 (557)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence            334455554444 4568899998888888888877  44554433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.41  E-value=2.2e-10  Score=109.69  Aligned_cols=199  Identities=17%  Similarity=0.108  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR  558 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  558 (701)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            4455666667777777777777777766542 2345566667777777777777777777777653 4455666667777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 037695          559 YCQVGRVEDLLKLLEKMLSKQK--C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL  635 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  635 (701)
                      +...|++++|.+.++++....+  . ...+..++.++...|++++|...+.++++..+. +...+..++..+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence            7777778888777777775432  1 345666777777888888888888887775433 55667777778888888888


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          636 AYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       636 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      |...++++.... .++...+..++..+...|+.++|..+.+.+.+.
T Consensus       188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            888888877741 223455556677777788888888877766554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=3.9e-11  Score=110.08  Aligned_cols=239  Identities=15%  Similarity=0.022  Sum_probs=192.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHH
Q 037695          447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTY-TTIIDALS  525 (701)
Q Consensus       447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~  525 (701)
                      -+.+..+|.+.|.+.+|.+.++..++.  .|.+.||-.|-+.|.+..++..|+.+|.+-.+.  .|-.+|| .-+...+.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence            366778888999999999999888776  566778888888999999999999999888774  4555554 45667788


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKI  604 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  604 (701)
                      ..++.++|.++|+...+.. +.+.+...++...|.-.++.+-|+.+|+++++.+.. +..+..++-+|.-.+.++-++.-
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence            8889999999999888864 567777778888888889999999999999988765 78888888888889999999999


Q ss_pred             HHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          605 LGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       605 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      |++++.....|+  ..+|..+.......|++..|...|+-++..+.. +...++.++-.-.+.|+.++|..++..+....
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            998887755444  467888888888899999999999888874433 44788888888888999999999999988887


Q ss_pred             CCCCchHHH
Q 037695          683 HIQPKSEEH  691 (701)
Q Consensus       683 ~~~~~~~~~  691 (701)
                      |.-.+...+
T Consensus       460 P~m~E~~~N  468 (478)
T KOG1129|consen  460 PDMAEVTTN  468 (478)
T ss_pred             ccccccccc
Confidence            754444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.39  E-value=1.9e-09  Score=111.75  Aligned_cols=130  Identities=17%  Similarity=0.128  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      ++..+...|...|++++|++++++++...|+ +..|..-++.|-..|++.+|...++.+...... |...-+-.+..+++
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence            4566677888999999999999999999998 788889999999999999999999999887744 88888888889999


Q ss_pred             cCChhhHHHHHHHHHhCCCCCCHh--------hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          630 KGIPLLAYKVACRMFNRNLIPDLK--------LCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       630 ~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      .|+.++|.+++..+.+.+..|-..        .....+.+|.+.|++..|++.|..+.+.
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999888866544321        1235577889999999999888777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=5.8e-11  Score=108.94  Aligned_cols=230  Identities=13%  Similarity=0.066  Sum_probs=166.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          377 YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR  456 (701)
Q Consensus       377 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  456 (701)
                      -+.+..+|.+.|.+.+|.+.|+...+.  .|.+.||..|-..|.+..++..|+.++.+-++. ++.+.....-+.+.+..
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            366778888888888888888887776  467777888888888888888888888877766 23444444556667777


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATEL  536 (701)
Q Consensus       457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  536 (701)
                      .++.+.|.++|+...+. .+.++....++...|...++++.|+..|+++.+.|+ .+...|+.+.-+|.-.++++-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            77888888888877765 344666666666777777788888888888877774 3666777777777777778877777


Q ss_pred             HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          537 MMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       537 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      |.+....--.|+  ...|..+.......|++..|.+.|+-++..+++ ..+++.|+-.-.+.|++++|..++..+...
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            777766533333  344666666666777777777777777777766 567777777777777777777777776554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.38  E-value=4.8e-10  Score=107.29  Aligned_cols=199  Identities=14%  Similarity=0.111  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          444 PVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDA  523 (701)
Q Consensus       444 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~  523 (701)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            4456666677777777777777777776652 3356666777777888888888888888777643 3345667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695          524 LSKNGRVEEATELMMKMLSKGL-VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       524 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  601 (701)
                      +...|++++|...+++...... +.....+..+...+...|++++|...+.++....|. ...+..++..+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            8888888888888888876422 223456667778888889999999999888888776 56777888888888999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ...++++++.. +.++..+..++..+...|+.++|..+.+.+..
T Consensus       189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99998888763 44667777778888888998888888777665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.37  E-value=2.9e-10  Score=122.30  Aligned_cols=251  Identities=13%  Similarity=0.028  Sum_probs=187.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          423 GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE---------GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG  493 (701)
Q Consensus       423 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  493 (701)
                      +..++|...|++.++.. +-+...+..+..++...         +++++|...++++.+.. +.+...+..+...+...|
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            45789999999998874 33556676666655422         34789999999998873 447788888888999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      ++++|...|++..+.+ +.+...+..+..+|...|++++|...+++..+.. +.+...+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            9999999999998854 3346678888999999999999999999999864 2233344445555677899999999999


Q ss_pred             HHHhcC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC
Q 037695          574 KMLSKQ-KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN-LIP  650 (701)
Q Consensus       574 ~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p  650 (701)
                      ++.... |. +..+..++.+|...|++++|...+.++.... +.+....+.+...|+..|+  .|...++++.+.. ..|
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRID  507 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhh
Confidence            988764 54 5567888999999999999999999876543 2244556667777888884  7888787776622 222


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          651 DLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ....  .....+.-.|+.+.+.-+ +++.+.+.
T Consensus       508 ~~~~--~~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        508 NNPG--LLPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             cCch--HHHHHHHHHhhhHHHHHH-HHhhccch
Confidence            2222  244566678888877777 88887764

>PRK12370 invasion protein regulator; Provisional

Probab=99.36  E-value=5.8e-10  Score=119.97  Aligned_cols=248  Identities=13%  Similarity=0.073  Sum_probs=180.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          388 GKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR---------EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG  458 (701)
Q Consensus       388 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  458 (701)
                      +.+++|...|++..+.. +.+...|..+..++..         .+++++|...+++.++.. +.+...+..+...+...|
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            34678999999998753 2344556666555542         234789999999998875 557778888888889999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 037695          459 KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSKNGRVEEATELM  537 (701)
Q Consensus       459 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~  537 (701)
                      ++++|...|+++.+.+ |.+...+..+...+...|++++|+..+++..+.  .|+. ..+..++..+...|++++|...+
T Consensus       353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            9999999999998874 446777888889999999999999999999885  4443 23334455566789999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC
Q 037695          538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KA  615 (701)
Q Consensus       538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~  615 (701)
                      +++....-+-++..+..+..++...|++++|...+.++....|. ....+.+...|+..|  ++|...++++++... .+
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            99887642234556777888888999999999999998877776 455666777777777  477777777665421 22


Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          616 DASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ....+  +...|.-.|+.+.+... +++.+
T Consensus       508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             cCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence            22222  34456666777666655 66666

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.36  E-value=3.9e-10  Score=115.21  Aligned_cols=237  Identities=18%  Similarity=0.208  Sum_probs=177.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNK-----GC-AVNV-VNFTSLIRGFCQKGDLEEALSLLDDMYL-----CKK  510 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~  510 (701)
                      -..+...+...|...|+++.|+.+++..++.     |. .|.+ ...+.+...|...+++.+|..+|+++..     .|-
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3456667888899999999999988887664     21 1222 2334467788999999999999998874     221


Q ss_pred             -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 037695          511 -DPD-TVTYTTIIDALSKNGRVEEATELMMKMLSK-----GLV-PT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ--  579 (701)
Q Consensus       511 -~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--  579 (701)
                       .|. ..+++.|..+|.+.|++++|..++++..+.     |.. |. ...++.++..|+..+++++|..++++..+..  
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence             122 346778888999999999998888877642     211 22 2236667788899999999999999877652  


Q ss_pred             ------CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          580 ------KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA----S---KADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       580 ------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                            +. ..+++.|+..|...|++++|.+++++++...    .   .-....++.|+..|...+.+.+|.++|.+...
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence                  12 4578999999999999999999999987653    1   12245678889999999999999988887655


Q ss_pred             ----CCC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          646 ----RNL-IPDL-KLCKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       646 ----~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                          .|+ .|+. .+|..|+..|-..|++++|+++.+++.
T Consensus       438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                222 2343 889999999999999999999998886

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=4.6e-08  Score=93.21  Aligned_cols=317  Identities=13%  Similarity=0.084  Sum_probs=229.7

Q ss_pred             CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695          370 CKPNTVSYTAFLNGL--CHNGKSLEAREMINTSEE-EWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVE  446 (701)
Q Consensus       370 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~  446 (701)
                      +.|+..+...-+.++  +..++...|...+-.+.. ..++.|+.....+...+...|+.++|...|++....+ +-+...
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~  268 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEA  268 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhh
Confidence            344433444444443  334555555554444333 2356788888999999999999999999999887653 222233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695          447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK  526 (701)
Q Consensus       447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~  526 (701)
                      .....-.+...|+++....+...+.... .-+...|-.-+.......++..|+.+-++.++.. +.+...|-.-...+..
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~  346 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA  346 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence            3333444567888888888877776542 2233344444445556788999999999887743 3345556555677889


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH-HHHH-hcCCHHHHHH
Q 037695          527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI-ENLC-SFGYLEEAGK  603 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~-~~~~-~~g~~~~A~~  603 (701)
                      .|++++|.-.|+...... |-+..+|.-|++.|...|.+.+|.-.-+.....-|. ..++.-++ ..+. .-.--++|.+
T Consensus       347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk  425 (564)
T KOG1174|consen  347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK  425 (564)
T ss_pred             ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence            999999999999988753 557899999999999999999999888877666554 55555553 3332 3344689999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ++++.++..+.. ....+.++..+...|....++.++++.+.  ..||......+++.+...+.+++|.+.|..++..+|
T Consensus       426 f~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  426 FAEKSLKINPIY-TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHhhhccCCcc-HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence            999998765332 34456778889999999999999999999  888999999999999999999999999999999998


Q ss_pred             CCCchHHHHh
Q 037695          684 IQPKSEEHLQ  693 (701)
Q Consensus       684 ~~~~~~~~l~  693 (701)
                      +..-...-++
T Consensus       503 ~~~~sl~Gl~  512 (564)
T KOG1174|consen  503 KSKRTLRGLR  512 (564)
T ss_pred             cchHHHHHHH
Confidence            6655544443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=3.3e-07  Score=91.69  Aligned_cols=121  Identities=17%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHH
Q 037695          144 YYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT--AIHVL  221 (701)
Q Consensus       144 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--ll~~~  221 (701)
                      ..+=++.+...+++++|.+....+...+ +-+...+..-+.++.+.+++++|+.+.+.-..      ..+++.  +=.+|
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY   87 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY   87 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence            3344555666667777777766666554 44555566666666666777776644443211      011111  23333


Q ss_pred             H--ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhC
Q 037695          222 V--VGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLK  275 (701)
Q Consensus       222 ~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  275 (701)
                      |  +.+..++|+..++-..    +.+..+...-...+.+.|++++|+.+|+.+.+.
T Consensus        88 c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen   88 CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3  5666666666666221    112224444445566666666666666666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.31  E-value=6.7e-10  Score=97.66  Aligned_cols=206  Identities=15%  Similarity=0.041  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695          481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC  560 (701)
Q Consensus       481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  560 (701)
                      +...|.-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++.++.. +-+....|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            45556677888888888888888887743 3345677777788888888888888888887753 445666777777778


Q ss_pred             hcCCHHHHHHHHHHHHhcC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695          561 QVGRVEDLLKLLEKMLSKQ--KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY  637 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  637 (701)
                      ..|++++|...|++++...  +. ..++..++.+-.+.|+.+.|...|++.++..+. .+.+...+.....+.|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            8888888888888877642  22 467777787778888888888888888876643 4555667777788888888888


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695          638 KVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       638 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                      .++++....+. ++.......+++-...|+-+.|.++=..+...-|.++....
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~  245 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT  245 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence            88887777655 66666666666667778877777777777776665555443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=4.3e-07  Score=95.82  Aligned_cols=224  Identities=20%  Similarity=0.212  Sum_probs=133.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA  498 (701)
Q Consensus       419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A  498 (701)
                      +...+-+++|+.+|+...     .+....+.|+.   ..+.++.|.++-+++.      .+..|..+..+-.+.|.+.+|
T Consensus      1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred             HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence            344555666666666532     22333333332   2345555555544332      455677777777777888777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695          499 LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK  578 (701)
Q Consensus       499 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  578 (701)
                      ++-|-+.      .|+..|.-.++...+.|.+++-.+++....+..-.|...  ..|+-+|++.++..+..+++     .
T Consensus      1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-----~ 1190 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-----A 1190 (1666)
T ss_pred             HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-----c
Confidence            7766443      355677778888888888888888777766665555544  35677777777777665554     3


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-------------
Q 037695          579 QKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-------------  645 (701)
Q Consensus       579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------  645 (701)
                      +|+......+++-|...|.++.|.-+|..+         ..|..|...+...|+++.|.+..+++-.             
T Consensus      1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred             CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence            566555666666666666666666555432         2344455555555555555544433321             


Q ss_pred             -----------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          646 -----------RNLIPDLKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       646 -----------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                                 .++....+-...++.-|...|-++|-+.+++..
T Consensus      1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred             hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence                       122223445556666677777777777777654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=2.9e-06  Score=89.87  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037695          514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLC  593 (701)
Q Consensus       514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~  593 (701)
                      +..|..+..+-.+.|.+.+|++-|-+.      .|+..|..+++...+.|.+++..+++.-+.++...+.+-..|+.+|+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence            345667777777777777776655332      35667777788888888888888777766665444555567777788


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037695          594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADT  673 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  673 (701)
                      +.+++.+-..++.       .||......++.-|...|.++.|.-+|.         +...|..++..+...|.++.|..
T Consensus      1178 kt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred             HhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHH
Confidence            8777777655542       4666667777777777777777765553         34466778888888888888876


Q ss_pred             HHHHH
Q 037695          674 LMLRF  678 (701)
Q Consensus       674 ~~~~~  678 (701)
                      .-+++
T Consensus      1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred             Hhhhc
Confidence            66554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.26  E-value=6.9e-09  Score=91.38  Aligned_cols=196  Identities=14%  Similarity=0.054  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695          447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK  526 (701)
Q Consensus       447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~  526 (701)
                      ...|.-.|...|+...|..-+++.++. -+.+..+|..+...|.+.|..+.|.+.|++..... +.+..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            334444555555555555555555554 12344455555555555555555555555555432 2233444555555555


Q ss_pred             cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 037695          527 NGRVEEATELMMKMLSKG-LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKI  604 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  604 (701)
                      .|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++.+...|+ +.+...+.....+.|++-.|...
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence            555555555555555431 1112334444554555555555555555555555555 44455555555555555555555


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          605 LGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ++.....+. ++...+-..|..-...|+-+.|-.+=.++.+
T Consensus       196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            555544443 4554444445555555555544444444444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=4.9e-09  Score=103.11  Aligned_cols=196  Identities=12%  Similarity=-0.073  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037695          480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRY  559 (701)
Q Consensus       480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  559 (701)
                      ..|..+...|...|++++|...|++..+.. +.+...|+.+...|...|++++|...|++.++.. +-+..+|..+..++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l  142 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            335555555666666666666666665532 2235566666666666666666666666666542 22345555666666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 037695          560 CQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKV  639 (701)
Q Consensus       560 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  639 (701)
                      ...|++++|++.|++..+..|+..........+...++.++|...+.+..... .++...   ....+...|+...+ +.
T Consensus       143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~---~~~~~~~lg~~~~~-~~  217 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG---WNIVEFYLGKISEE-TL  217 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH---HHHHHHHccCCCHH-HH
Confidence            66666666666666666666653321222222334556666666665544322 122111   12223334444333 22


Q ss_pred             HHHHHh---CCC--CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          640 ACRMFN---RNL--IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       640 ~~~~~~---~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      ++.+.+   ..+  .|+ ...|..++..+.+.|++++|+.+|+++++.+
T Consensus       218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            222221   111  111 2456666666666677777777776666655

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.24  E-value=7.7e-08  Score=89.44  Aligned_cols=331  Identities=14%  Similarity=0.114  Sum_probs=210.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHH
Q 037695          338 DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS-VVM  416 (701)
Q Consensus       338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll  416 (701)
                      ++.-..-+...+...|++..|+.-|...++.. +-+-.++-.-...|...|+...|+.-+...++.  +||-..-. .-.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg  113 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence            34444455666666777777777777766531 111222333344566667777777666666654  45543221 122


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695          417 HGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLE  496 (701)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  496 (701)
                      ..+.+.|.+++|..=|+.+++..  |+..+   ...++.+.-..++-                ......+..+...|+..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~  172 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQ  172 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchh
Confidence            34566777777777777776663  22111   11111111111111                11222344556678888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      .|+.....+++-. +-|...|..-..+|...|.+..|+.-+....+.. ..+..++..+...+...|+.+.++...++.+
T Consensus       173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL  250 (504)
T KOG0624|consen  173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL  250 (504)
T ss_pred             hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            8888888887732 3366677777888888888888888777766653 4456667777788888888888888888888


Q ss_pred             hcCCCh----hHHHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhhHHHHH
Q 037695          577 SKQKCR----TAYNQV---------IENLCSFGYLEEAGKILGKVLRTASKADASTC---HVLVESYLNKGIPLLAYKVA  640 (701)
Q Consensus       577 ~~~p~~----~~~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~  640 (701)
                      +.+|+.    +.|..+         +......+++.++....++.++..+......+   ..+-.+|...|++.+|+...
T Consensus       251 KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC  330 (504)
T KOG0624|consen  251 KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC  330 (504)
T ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence            888872    223222         22334567788888888888877654333333   33445666778888999988


Q ss_pred             HHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhhh
Q 037695          641 CRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQR  696 (701)
Q Consensus       641 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  696 (701)
                      .+.++  +.|+ ..++-.-+.+|+-...+++|+.-|+++.+.+........-+.+..
T Consensus       331 ~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak  385 (504)
T KOG0624|consen  331 KEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK  385 (504)
T ss_pred             HHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            88888  6666 688888888999889999999999999888876666666555543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=7.6e-08  Score=95.28  Aligned_cols=437  Identities=13%  Similarity=0.085  Sum_probs=247.3

Q ss_pred             HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCh
Q 037695          184 VAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPN-VLTYNCLIKGYCDLHRI  262 (701)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~  262 (701)
                      .+....|+++.|+.+|...+... ++|...|..=..+|+..|++++|++=-.+-.+.  .|+ ...|+-...++...|++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence            34456788888888888888776 557788888888888888888887766665554  343 55788888888888888


Q ss_pred             hHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695          263 KDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTY  342 (701)
Q Consensus       263 ~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  342 (701)
                      ++|+.-|.+-.+.. +.+...++.+..++.-    +.+.     +.                          .--++..|
T Consensus        87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~----~~~~-----~~--------------------------~~~~p~~~  130 (539)
T KOG0548|consen   87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLE----DYAA-----DQ--------------------------LFTKPYFH  130 (539)
T ss_pred             HHHHHHHHHHhhcC-CchHHHHHhHHHhhhH----HHHh-----hh--------------------------hccCcHHH
Confidence            88888888776652 2244555555555411    0000     00                          00122222


Q ss_pred             HHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCChhhH
Q 037695          343 TAVVN-----GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINT-----SEEEWWTPNAITY  412 (701)
Q Consensus       343 ~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~  412 (701)
                      ..+..     .+.....+..   ++..+..   .|.  .    +..|....++..+...+..     +...+..+....-
T Consensus       131 ~~l~~~p~t~~~~~~~~~~~---~l~~~~~---~p~--~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~  198 (539)
T KOG0548|consen  131 EKLANLPLTNYSLSDPAYVK---ILEIIQK---NPT--S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMA  198 (539)
T ss_pred             HHhhcChhhhhhhccHHHHH---HHHHhhc---CcH--h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence            22211     1111111111   1111111   111  1    1111111111111111110     0011100000000


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          413 SVVMHGLRREGKLSEACDVVREMVK-KGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ  491 (701)
Q Consensus       413 ~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  491 (701)
                      +    -+.+..   .......++.+ .....-..-...+..+..+..++..|.+.+....+..  -++.-++....+|..
T Consensus       199 ~----p~~~~~---~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e  269 (539)
T KOG0548|consen  199 E----PCKQEH---NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLE  269 (539)
T ss_pred             C----cccccC---CCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHh
Confidence            0    000000   00000000000 0000011224566677777888888888888887764  456666777778888


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695          492 KGDLEEALSLLDDMYLCKKDPDTV-------TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR  564 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  564 (701)
                      .|.+..+........+.|.. ...       .+..+..+|.+.++++.++..|.+.+.....|+.         ..+...
T Consensus       270 ~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~  339 (539)
T KOG0548|consen  270 RGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKE  339 (539)
T ss_pred             ccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHH
Confidence            88888877777666655421 111       2233445666778888888888887665433322         233445


Q ss_pred             HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037695          565 VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRM  643 (701)
Q Consensus       565 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  643 (701)
                      .+++.+......-.+|. ..-...-+..+.+.|++..|+..|.+++... +-|...|...+-+|.+.|.+..|+.-.+..
T Consensus       340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            56666666555555555 2233334777788888888888888888877 447888888888888888888888888888


Q ss_pred             HhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHh
Q 037695          644 FNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQ  693 (701)
Q Consensus       644 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  693 (701)
                      .+  +.|+. ..|..-+.++....+|++|.+.|.+..+..+.......+++
T Consensus       419 ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~  467 (539)
T KOG0548|consen  419 IE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR  467 (539)
T ss_pred             Hh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            88  45554 66666677777788888888888888888764444444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.20  E-value=1.2e-08  Score=104.54  Aligned_cols=197  Identities=19%  Similarity=0.232  Sum_probs=132.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCCHH
Q 037695          449 LLIQSLCREGKMDGAKKFMQECLNK-----G--CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL-----CKK-DPDTV  515 (701)
Q Consensus       449 ~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~~  515 (701)
                      .+...|...+++.+|..+|++++..     |  .+--..+++.|...|.+.|++++|...+++..+     .|. .|.+.
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            3555566666666666666665442     1  111234455566667777777776666655442     111 22222


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------
Q 037695          516 -TYTTIIDALSKNGRVEEATELMMKMLSK---GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ--------  579 (701)
Q Consensus       516 -~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------  579 (701)
                       .++.++..|...+++++|..++....+.   -..++    ..+++.|...|...|++++|.++++++++..        
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence             3556667778888888888888776542   11222    4678899999999999999999999888762        


Q ss_pred             CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          580 KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT----AS-KAD-ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       580 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +. ...++.++..|.+.+++.+|.++|.+....    |+ .|+ ..+|..|+..|...|+++.|+++.+.+..
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            11 346788889998889988888888775432    22 223 46789999999999999999999887764

>PF13041 PPR_2: PPR repeat family

Probab=99.20  E-value=3.3e-11  Score=82.43  Aligned_cols=49  Identities=43%  Similarity=0.886  Sum_probs=29.8

Q ss_pred             CChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHH
Q 037695          244 PNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLC  292 (701)
Q Consensus       244 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~  292 (701)
                      ||+.+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4556666666666666666666666666666666666666666665554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.20  E-value=1.8e-06  Score=91.49  Aligned_cols=184  Identities=14%  Similarity=0.071  Sum_probs=129.8

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 037695          120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVL  199 (701)
Q Consensus       120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  199 (701)
                      +...|+..|-.+.+..  +.=...|..|...|...-+...|.+.|+..-+.. ..+...+......|++..+++.|..+.
T Consensus       473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence            3445666655544433  2335578999999998888899999998887754 346778889999999999999999883


Q ss_pred             HHHHHCC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCC
Q 037695          200 SMMQKAA-VAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCS  278 (701)
Q Consensus       200 ~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  278 (701)
                      -..-+.. ...-...|....-.|...++...|..-|+...+.. +.|...|..+..+|...|++..|.++|.+....  .
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r  626 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R  626 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence            3332211 01111223334445667889999999999988764 456788999999999999999999999888764  4


Q ss_pred             CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037695          279 PDK-VSYYTVMGYLCKEKRIKEVRDLMEKMVN  309 (701)
Q Consensus       279 pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~  309 (701)
                      |+. ..-.-.....+-.|.+.++...+..+..
T Consensus       627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            443 2222233445678899999888887765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=2.2e-06  Score=85.98  Aligned_cols=141  Identities=19%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695          494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMM--------KMLSKGLVPTVVTYRTVIHRYCQVGRV  565 (701)
Q Consensus       494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~  565 (701)
                      .+.+|.+++...-+..........-.++......|+++.|++++.        .+.+.+..|  .+...+...+.+.++-
T Consensus       356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~  433 (652)
T KOG2376|consen  356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN  433 (652)
T ss_pred             HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence            355566666555443222223344445555566677777776666        333333333  3344455556666655


Q ss_pred             HHHHHHHHHHHhc----CCChhH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695          566 EDLLKLLEKMLSK----QKCRTA----YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY  637 (701)
Q Consensus       566 ~~A~~~~~~~~~~----~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  637 (701)
                      +.|..++..++.-    .+....    +...+..-.+.|+-++|..+++++.+.. ++|..+...++.+|+... ++.|.
T Consensus       434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~  511 (652)
T KOG2376|consen  434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAE  511 (652)
T ss_pred             ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHH
Confidence            5555555554432    111122    2222223335577777777777776644 446666666666665543 34444


Q ss_pred             H
Q 037695          638 K  638 (701)
Q Consensus       638 ~  638 (701)
                      .
T Consensus       512 ~  512 (652)
T KOG2376|consen  512 S  512 (652)
T ss_pred             H
Confidence            3

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=1e-05  Score=84.03  Aligned_cols=500  Identities=14%  Similarity=0.136  Sum_probs=275.5

Q ss_pred             CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC--------C-CCCHHHHHHHHHHHHH
Q 037695          118 QADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG--------I-ECRPEAFSYLMVAYSR  188 (701)
Q Consensus       118 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~-~~~~~~~~~li~~~~~  188 (701)
                      .|+.+.|++-...+..       ...|..+.+.+.+.++.+-|.-.+..|....        . .++ .+=..+...-..
T Consensus       741 iG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie  812 (1416)
T KOG3617|consen  741 IGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE  812 (1416)
T ss_pred             eccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence            3788888877665432       3489999999999999999988888776421        1 121 333334444457


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHH
Q 037695          189 AGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKL  268 (701)
Q Consensus       189 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  268 (701)
                      .|.+++|..+|.+-++         |..|=..|-..|.+++|.++-+.-.+.  .. ..||..-...+-..++.+.|++.
T Consensus       813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HL-r~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--HL-RNTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--eh-hhhHHHHHHHHHhhccHHHHHHH
Confidence            8999999999999875         334555667789999999988764432  22 24565566677778899999998


Q ss_pred             HHHchhCCCCCCHHHHH------HHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695          269 IDEMPLKGCSPDKVSYY------TVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTY  342 (701)
Q Consensus       269 ~~~m~~~g~~pd~~~~~------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  342 (701)
                      |++.-..    --..+.      .-|..|.+..+-+.-...+.+.+.      ..|.++.|+.++...+.         |
T Consensus       881 yEK~~~h----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE------S~GemdaAl~~Y~~A~D---------~  941 (1416)
T KOG3617|consen  881 YEKAGVH----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE------SVGEMDAALSFYSSAKD---------Y  941 (1416)
T ss_pred             HHhcCCh----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh------cccchHHHHHHHHHhhh---------h
Confidence            8775321    111111      224455555444444444444433      34778888888777664         6


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 037695          343 TAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE  422 (701)
Q Consensus       343 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  422 (701)
                      -.+++..|-.|+.++|-++-++-      -|......|.+.|-..|++.+|...|.+...         |...|+.|- .
T Consensus       942 fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcK-E 1005 (1416)
T KOG3617|consen  942 FSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCK-E 1005 (1416)
T ss_pred             hhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHH-h
Confidence            66777888888888888776552      2666677788888888888888888876543         222333222 2


Q ss_pred             CCHHH----------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHc--CCC
Q 037695          423 GKLSE----------------ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQE--------CLNK--GCA  476 (701)
Q Consensus       423 g~~~~----------------A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------~~~~--~~~  476 (701)
                      +++++                |...|++   .|..     +...+..|-+.|.+.+|+++--.        ++..  ...
T Consensus      1006 nd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred             cCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence            22221                2222221   1100     11222334455555555443211        1111  223


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CC----------------CCCCH----HHHHHHHHHHHh
Q 037695          477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYL----------CK----------------KDPDT----VTYTTIIDALSK  526 (701)
Q Consensus       477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------~~----------------~~p~~----~~~~~li~~~~~  526 (701)
                      .|+...+-..+.|+...++++|..++-..++          .|                -.|+.    .....+...|.+
T Consensus      1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence            3455555555666666666666655433221          11                12222    235556677777


Q ss_pred             cCCHHHHHHHHHHHH----------hCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHH
Q 037695          527 NGRVEEATELMMKML----------SKGL----------VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYN  586 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~----------~~~~----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  586 (701)
                      .|.+..|.+-|.+.-          +.|-          .-..++| .+..-|.+.-+|..--++++.+..-+-...++.
T Consensus      1158 QG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd 1236 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETFYTKGQAFD 1236 (1416)
T ss_pred             ccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceee-eehhhhhhhcccccChHHHhhhHhhhhcchhHH
Confidence            887777666554321          1120          0001111 111222222222222222222222221222333


Q ss_pred             HHHHHHH---------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------hcCChhhHHHHH
Q 037695          587 QVIENLC---------------SFGYLEEAGKILGKVLRTASKADASTCHVLVESYL-----------NKGIPLLAYKVA  640 (701)
Q Consensus       587 ~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~  640 (701)
                      .|+..|.               ..|-+++|-..+.++...+  .....++.|-.-..           ...+....+...
T Consensus      1237 ~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc 1314 (1416)
T KOG3617|consen 1237 HLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQC 1314 (1416)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3333322               1234455555555554332  12223333321111           112555556666


Q ss_pred             HHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          641 CRMFNRNLIPD----LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       641 ~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ..|+..-+.|+    ..+|..++..+....+|..|...++.+.++-|
T Consensus      1315 ~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1315 TTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred             HHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence            66666544443    37888889999999999999999999988765

>PF13041 PPR_2: PPR repeat family

Probab=99.17  E-value=8.8e-11  Score=80.29  Aligned_cols=49  Identities=39%  Similarity=0.752  Sum_probs=27.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695          477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS  525 (701)
Q Consensus       477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~  525 (701)
                      ||+.+||+++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.15  E-value=7.2e-07  Score=91.04  Aligned_cols=195  Identities=15%  Similarity=0.173  Sum_probs=130.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 037695          345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGK  424 (701)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  424 (701)
                      .+.+......+.+|+.+++.+.+..  .-+..|..+...|...|+++.|.++|.+.         ..++..|..|.+.|+
T Consensus       738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence            3455566778888888888887653  23445667778888888888888888543         235567788888888


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDD  504 (701)
Q Consensus       425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  504 (701)
                      |+.|..+-.+.  .|.......|-.-..-+-+.|++.+|.++|-.+.    .|+     ..|.+|-+.|..+..+++..+
T Consensus       807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence            88888776544  3333444555555566677888888887764332    122     346778888888888887776


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          505 MYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       505 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      -..   ..-..|...+..-|-..|+...|...|-+..+         |.+-++.|-.++.|++|.++-+
T Consensus       876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence            521   12234566677777788888888876654432         5566677777788888776554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.14  E-value=2e-07  Score=96.90  Aligned_cols=290  Identities=16%  Similarity=0.164  Sum_probs=174.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-h----
Q 037695          347 NGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLR-R----  421 (701)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~----  421 (701)
                      ..+...|++++|++.+..-... +......+......+.+.|+.++|..++..++..+  |+-..|...+..+. -    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence            3356677777777777664433 22233444556667777777777777777777764  44444433333332 1    


Q ss_pred             -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          422 -EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKM-DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL  499 (701)
Q Consensus       422 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  499 (701)
                       ....+....+++++...  .|.......+.-.+.....+ ..+..++..++.+|+|+   +|+.|-..|....+..-..
T Consensus        89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence             12456666777766555  23333322222222221122 34455556666666543   3444444555444444444


Q ss_pred             HHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695          500 SLLDDMYLC----K----------KDPDTV--TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG  563 (701)
Q Consensus       500 ~~~~~~~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  563 (701)
                      .++......    +          -+|...  ++..+...|...|++++|+++.++.++.. |-.+..|..-++.+-+.|
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence            555544321    1          123432  44556777888888999999888888863 333777888888888889


Q ss_pred             CHHHHHHHHHHHHhcCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHH--HHHHHHHHhcCChh
Q 037695          564 RVEDLLKLLEKMLSKQKCRT-AYNQVIENLCSFGYLEEAGKILGKVLRTASKADA------STC--HVLVESYLNKGIPL  634 (701)
Q Consensus       564 ~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~--~~l~~~~~~~g~~~  634 (701)
                      ++.+|.+.++.+...++... +-+..+..+.++|++++|..++....+.+..|..      .+|  ...+.+|.+.|++.
T Consensus       243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999988888888876643 4445566677888999998888877665432221      122  34567788888888


Q ss_pred             hHHHHHHHHHh
Q 037695          635 LAYKVACRMFN  645 (701)
Q Consensus       635 ~A~~~~~~~~~  645 (701)
                      .|++.|....+
T Consensus       323 ~ALk~~~~v~k  333 (517)
T PF12569_consen  323 LALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHH
Confidence            88887766555

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.14  E-value=5e-08  Score=96.01  Aligned_cols=216  Identities=13%  Similarity=0.015  Sum_probs=123.0

Q ss_pred             CCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          423 GKLSEACDVVREMVKKG-FFPT--PVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL  499 (701)
Q Consensus       423 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  499 (701)
                      +..+.++.-+.+++... ..|+  ...|..+...+...|+++.|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            34455666666665432 1111  2345556666677777777777777776653 345667777777777777777777


Q ss_pred             HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695          500 SLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK  578 (701)
Q Consensus       500 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  578 (701)
                      ..|+...+.  .|+ ..+|..+..++...|++++|.+.|++..+..  |+..........+...++.++|...|.+....
T Consensus       119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            777777663  343 4566666777777777777777777777643  33221111122233456677777777655433


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695          579 QKCRTAYNQVIENLCSFGYLEEAGKILGKVLR---TAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNR  646 (701)
Q Consensus       579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  646 (701)
                      .+. ..+. ........|+..++ ..+..+.+   ..+   +.....|..++..+.+.|++++|+..|++++..
T Consensus       195 ~~~-~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        195 LDK-EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             CCc-cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            221 1111 12222234444333 23333321   111   112356777788888888888888888888773

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2.1e-06  Score=85.28  Aligned_cols=426  Identities=14%  Similarity=0.057  Sum_probs=237.5

Q ss_pred             hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 037695          116 RSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNA  195 (701)
Q Consensus       116 ~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A  195 (701)
                      .+.|+++.|+..|..+..-.  |+|...|+.-..+|+..|++++|.+=-..-++.. |.=+..|+....++.-.|++++|
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA   89 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEA   89 (539)
T ss_pred             cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHH
Confidence            44589999999998776655  6688889999999999999999988776666643 22356789999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHH-----HHHHhcCChhHHHHHHH
Q 037695          196 MYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLI-----KGYCDLHRIKDAIKLID  270 (701)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~  270 (701)
                      +..|..-.+.. +.|...++.+..++.    .+.+.     +...   .++..|..+.     ..+...-.+..-++.+.
T Consensus        90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~  156 (539)
T KOG0548|consen   90 ILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQ  156 (539)
T ss_pred             HHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence            99999988765 556667777777761    11111     1110   0111111111     11111111111111111


Q ss_pred             HchhC-CCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHhcCCCCCC---------CCcHHHHHHHHHHHHHcCCCcCH
Q 037695          271 EMPLK-GCSPDKVSYYTVMGYLCKEKRIKEV-RDLMEKMVNDSNLFHD---------QGRIEEAKELVNQMSQMGCIPDV  339 (701)
Q Consensus       271 ~m~~~-g~~pd~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~  339 (701)
                      .-... +...+   ...++.+.......+.- ...-..+.......|.         .++..+-.+.         .--.
T Consensus       157 ~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~---------k~~a  224 (539)
T KOG0548|consen  157 KNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV---------KEKA  224 (539)
T ss_pred             cCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH---------HHhh
Confidence            11100 00000   01111111110000000 0000000000011111         0111110000         0011


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695          340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL  419 (701)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  419 (701)
                      .-...+.++..+..++..|++-+....+..  -+..-++....+|...|.+..+...-....+.|. -...-|+.+.   
T Consensus       225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIa---  298 (539)
T KOG0548|consen  225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIA---  298 (539)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHH---
Confidence            224455666666777777777777766653  3444455566666666666666655555443321 0111111111   


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL  499 (701)
Q Consensus       420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  499 (701)
                                               ..+..+..+|.+.++++.++..|.+.+.....|+..         .+....++++
T Consensus       299 -------------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~  344 (539)
T KOG0548|consen  299 -------------------------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKAL  344 (539)
T ss_pred             -------------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHH
Confidence                                     111223345556677788888887766543332222         2334455555


Q ss_pred             HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695          500 SLLDDMYLCKKDPDTV-TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK  578 (701)
Q Consensus       500 ~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  578 (701)
                      +......-  +.|... -...-...+.+.|++..|+..|.+++... |-|...|....-+|.+.|.+..|++-.+..++.
T Consensus       345 k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  345 KEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            55554433  233321 12223567778899999999999988876 667888888888889999999999988888888


Q ss_pred             CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          579 QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       579 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      +|+ ...|..-+.++....++++|...|.+.++..
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            887 6677777777888888999999998888764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.09  E-value=6.5e-06  Score=87.48  Aligned_cols=560  Identities=13%  Similarity=0.001  Sum_probs=292.7

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 037695          120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG-IECRPEAFSYLMVAYSRAGKLRNAMYV  198 (701)
Q Consensus       120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~  198 (701)
                      |...|.+.|..+..-.  +.+...+....+.|++..+++.|..+.-...+.. ...-...|..+.-.|...++...|+.-
T Consensus       507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~  584 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE  584 (1238)
T ss_pred             HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence            5566888888665443  5677889999999999999999999843222211 111223344455567788899999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChH-HHHHHHHHHHhcCChhHHHHHHHHchhC--
Q 037695          199 LSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVL-TYNCLIKGYCDLHRIKDAIKLIDEMPLK--  275 (701)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--  275 (701)
                      |+...+.. +.|...|..+..+|.++|++..|+++|.+....  .|+.. .---....-+..|.+.+|+..+......  
T Consensus       585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            99998776 778889999999999999999999999988765  44322 2112233456788888888888776532  


Q ss_pred             ----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-------HhcCCC-------------------CCCCCcHHHHHH
Q 037695          276 ----GCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM-------VNDSNL-------------------FHDQGRIEEAKE  325 (701)
Q Consensus       276 ----g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~-------------------~~~~g~~~~a~~  325 (701)
                          +..--..++..+...+...|-...+...++.-       ....-.                   .|+.-. .....
T Consensus       662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn-~h~l~  740 (1238)
T KOG1127|consen  662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN-MHYLI  740 (1238)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH-HHHHH
Confidence                11111223333333333333333333333222       110100                   000000 00001


Q ss_pred             H-HHHHHHcCCC--------------------cCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHHcCCCCCHHH
Q 037695          326 L-VNQMSQMGCI--------------------PDVVTYTAVVNGFCR----VG----ELDQAKKMLQQMYHHGCKPNTVS  376 (701)
Q Consensus       326 ~-~~~~~~~~~~--------------------p~~~~~~~li~~~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~  376 (701)
                      + +.+....+..                    .+..+|..+...|.+    .+    +...|+..++..++.. .-+..+
T Consensus       741 il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~  819 (1238)
T KOG1127|consen  741 ILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGL  819 (1238)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHH
Confidence            1 1111111111                    122334444433333    11    2335666666665431 124444


Q ss_pred             HHHHHH---------------------------------HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 037695          377 YTAFLN---------------------------------GLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREG  423 (701)
Q Consensus       377 ~~~li~---------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  423 (701)
                      |+.|--                                 .+.++.+++.|...|....... +.+...|..........|
T Consensus       820 WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG  898 (1238)
T KOG1127|consen  820 WNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVG  898 (1238)
T ss_pred             HHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHH
Confidence            444432                                 2333445555555555544432 334444544444444555


Q ss_pred             CHHHHHHHHHHHH--H--cCCCCCHHHHHHHHHHHHhcCCHHHHHHH----------HHHHHHcCCCCCHHHHHHHHHHH
Q 037695          424 KLSEACDVVREMV--K--KGFFPTPVEINLLIQSLCREGKMDGAKKF----------MQECLNKGCAVNVVNFTSLIRGF  489 (701)
Q Consensus       424 ~~~~A~~~~~~m~--~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~----------~~~~~~~~~~~~~~~~~~ll~~~  489 (701)
                      +.-++..+|..-.  .  .|-.+...-+..........|+.+.-+..          +..... +.+.....|.+.....
T Consensus       899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstl  977 (1238)
T KOG1127|consen  899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTL  977 (1238)
T ss_pred             HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHH
Confidence            5555555555411  1  12122222222222223334443332222          222222 3455666677666666


Q ss_pred             HhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695          490 CQKGDLEEALSLLDDMYLC-KKDPDTVTYTT----IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR  564 (701)
Q Consensus       490 ~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  564 (701)
                      -..+.+..|..+..+.... ...-+..+|+.    +.+.++..|.++.|..-+...-.   ..+..+...-+.. .-.++
T Consensus       978 EhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffknd 1053 (1238)
T KOG1127|consen  978 EHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKND 1053 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhH
Confidence            6677777777666654310 01234444553    23344555666655443322111   1111111111111 33688


Q ss_pred             HHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 037695          565 VEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVA  640 (701)
Q Consensus       565 ~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  640 (701)
                      ++++.+.|++++..-.+    ......++.+....+..+.|...+-+..... +++....-.+...+.-..+-.....+.
T Consensus      1054 f~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssail 1132 (1238)
T KOG1127|consen 1054 FFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAIL 1132 (1238)
T ss_pred             HHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHH
Confidence            99999999998876433    3456677777778888888988888777654 556555545544444333322222233


Q ss_pred             HHH---HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          641 CRM---FNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       641 ~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      +++   .+.... ..+-....-..|.+.|+-....+.+.++.-.+|..|..=..|..
T Consensus      1133 eel~kl~k~e~~-~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1133 EELEKLLKLEWF-CWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred             HHHHHhhhhHHh-ccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            333   221111 11111122235778899999999999999888866665555543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=3.2e-05  Score=80.57  Aligned_cols=249  Identities=14%  Similarity=0.146  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCH----HH
Q 037695          373 NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVK--KGFFPTP----VE  446 (701)
Q Consensus       373 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~----~~  446 (701)
                      |+...+...+.++...++++|..++-...+         |...+..|... ++.-..++-+.|.-  .+ .|+.    ..
T Consensus      1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~-~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNR-NVRVTEEFAELMTPTKDD-MPNEQERKQV 1147 (1416)
T ss_pred             CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcC-CCchhHHHHHhcCcCcCC-CccHHHHHHH
Confidence            555566666666666677777666654443         22223333222 22222222222211  12 2222    24


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH----------------HHHHHHHHhCCC
Q 037695          447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA----------------LSLLDDMYLCKK  510 (701)
Q Consensus       447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A----------------~~~~~~~~~~~~  510 (701)
                      +..+...|.+.|.+..|-+-|.++-.+         -.-++++.+.|+.++.                ...++.+   ..
T Consensus      1148 Leqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtl---DW 1215 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTL---DW 1215 (1416)
T ss_pred             HHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhc---cc
Confidence            556666777788877777666554322         1234455555654432                1122211   12


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIE  590 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~  590 (701)
                      ..++.+...++..|.+..-++.--.+|......    .+.-|..+-.+   .|-.++|.+.+.++.+++.....++.|-.
T Consensus      1216 q~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~ 1288 (1416)
T KOG3617|consen 1216 QDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQE 1288 (1416)
T ss_pred             ccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            334455555555454444344333333333221    11112111111   24456666666666655433333333222


Q ss_pred             HHH-----------hcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695          591 NLC-----------SFGYLEEAGKILGKVLRTASKAD----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD  651 (701)
Q Consensus       591 ~~~-----------~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  651 (701)
                      -+.           -..+..+.+.-...+++....++    ...|..||..+....+++.|...+++|.++.+.-|
T Consensus      1289 ~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1289 DLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence            111           12355555666666666554443    35678889999999999999999999999654433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.03  E-value=1.8e-08  Score=97.41  Aligned_cols=147  Identities=20%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 037695          489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ----VGR  564 (701)
Q Consensus       489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~  564 (701)
                      +...|++++|++++...      .+.......+.+|.+.++++.|.+.++.|.+.  ..|. +...++.++..    .++
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence            34445555555554321      23344444555555555555555555555543  2222 22222222221    123


Q ss_pred             HHHHHHHHHHHHhcC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHH
Q 037695          565 VEDLLKLLEKMLSKQ-KCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP-LLAYKVACR  642 (701)
Q Consensus       565 ~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~  642 (701)
                      +.+|..+|+++..+. +++.+.+.++.+....|++++|..++.+++..++. ++.++..++......|+. +.+.+++.+
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            555555555555443 22444455555555555555555555555443322 444444455444444444 333344444


Q ss_pred             HHh
Q 037695          643 MFN  645 (701)
Q Consensus       643 ~~~  645 (701)
                      +..
T Consensus       262 L~~  264 (290)
T PF04733_consen  262 LKQ  264 (290)
T ss_dssp             CHH
T ss_pred             HHH
Confidence            444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.03  E-value=1.8e-05  Score=81.24  Aligned_cols=215  Identities=17%  Similarity=0.228  Sum_probs=154.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          384 LCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGA  463 (701)
Q Consensus       384 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  463 (701)
                      +...|+++.|...|-+..         .....+.+......|.+|+.+++.+....  .-..-|..+.+-|+..|+++.|
T Consensus       716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~a  784 (1636)
T KOG3616|consen  716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIA  784 (1636)
T ss_pred             HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHH
Confidence            344566666666554322         12234556677888999999999887763  2344577788889999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695          464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK  543 (701)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  543 (701)
                      .++|.+.         ..++-.|.+|.+.|+|+.|.++-.+...  .......|.+-..-+-..|++.+|.++|-..   
T Consensus       785 e~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---  850 (1636)
T KOG3616|consen  785 EELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---  850 (1636)
T ss_pred             HHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---
Confidence            9998753         3456778899999999999999877742  3344556666666777889999999888544   


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695          544 GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCH  621 (701)
Q Consensus       544 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  621 (701)
                      | .|+.     .|..|-+.|..++.+++..+-   +|+  ..+...++.-|-..|+++.|...|-++-         -|.
T Consensus       851 ~-~p~~-----aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~k  912 (1636)
T KOG3616|consen  851 G-EPDK-----AIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFK  912 (1636)
T ss_pred             c-CchH-----HHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHH
Confidence            3 4543     356788999999888877654   344  4677788888999999999998887653         245


Q ss_pred             HHHHHHHhcCChhhHHHHHH
Q 037695          622 VLVESYLNKGIPLLAYKVAC  641 (701)
Q Consensus       622 ~l~~~~~~~g~~~~A~~~~~  641 (701)
                      +.+.+|...+-+++|..+.+
T Consensus       913 aavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  913 AAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             HHHHHhhhhhhHHHHHHHHh
Confidence            56677777787877776654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.02  E-value=9.1e-06  Score=76.02  Aligned_cols=333  Identities=13%  Similarity=0.087  Sum_probs=204.3

Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHH-H
Q 037695          210 NLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNV-LTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYT-V  287 (701)
Q Consensus       210 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~-l  287 (701)
                      ++.-.--+...+...|++..|+..|....+.  .|+. .++---...|...|+...|+.-|....+.  +||-..-.. -
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR  112 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence            3334444566677777888888888777753  2332 22222345677778877777777777764  666433222 2


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          288 MGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH  367 (701)
Q Consensus       288 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  367 (701)
                      ...+.+.|.++.|..-|+.+++.   .|..|...++..-+..+.+.      ......+..+...|+...|+.....+++
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~------~~l~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEH------WVLVQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHH------HHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence            34556777777777777777552   22333333333322222211      1123334455567777777777777776


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695          368 HGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEI  447 (701)
Q Consensus       368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  447 (701)
                      .. +.|...|..-..+|...|.+..|+.-+....+.. ..+..++..+-..+...|+.+.++...++-++.  .|+...+
T Consensus       184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C  259 (504)
T KOG0624|consen  184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC  259 (504)
T ss_pred             cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence            53 4566677777777777777777776666655432 345555555666667777777777777766665  3443221


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHH
Q 037695          448 NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV---TYTTIIDAL  524 (701)
Q Consensus       448 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~  524 (701)
                      -..   |   ..+.+..+.+..|.                .....++|.++++..+..++........   .+..+-.++
T Consensus       260 f~~---Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~  317 (504)
T KOG0624|consen  260 FPF---Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY  317 (504)
T ss_pred             HHH---H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence            111   1   11222222222222                2345677888888888877643321222   344566777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 037695          525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR  582 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  582 (701)
                      ...+++.+|++...+.++.. +.|..++.--..+|.-...++.|+.-|+++.+.+++.
T Consensus       318 ~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  318 REDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             cccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            78899999999999998753 3448888888999999999999999999999888763

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.01  E-value=3.2e-06  Score=86.66  Aligned_cols=199  Identities=13%  Similarity=0.047  Sum_probs=97.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHH
Q 037695          483 TSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL-VPTV--VTYRTVIHRY  559 (701)
Q Consensus       483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~  559 (701)
                      ..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|..++++...... .|+.  ..|..+...+
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            344455556666666666666665532 22344555556666666666666666666555321 1221  2234455566


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCChh----HHH--HHHHHHHhcCCHHHHHHH---HHHHHHcCC-CCCHHHHHHHHHHHHh
Q 037695          560 CQVGRVEDLLKLLEKMLSKQKCRT----AYN--QVIENLCSFGYLEEAGKI---LGKVLRTAS-KADASTCHVLVESYLN  629 (701)
Q Consensus       560 ~~~g~~~~A~~~~~~~~~~~p~~~----~~~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~  629 (701)
                      ...|++++|..+++++....|...    .++  .++..+...|....+.++   ......... ..........+.++..
T Consensus       197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  276 (355)
T cd05804         197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG  276 (355)
T ss_pred             HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence            666666666666666654433111    101  222223333332222222   111111000 1111222245556666


Q ss_pred             cCChhhHHHHHHHHHhCCCC----C----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          630 KGIPLLAYKVACRMFNRNLI----P----DLKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       630 ~g~~~~A~~~~~~~~~~~~~----p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      .|+.+.|...++.+......    .    .....-..+..+...|++++|.+.+..++...
T Consensus       277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            77777777777666542111    0    11233334445667888888888887776654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.97  E-value=6.2e-05  Score=87.67  Aligned_cols=303  Identities=11%  Similarity=0.039  Sum_probs=185.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hh
Q 037695          344 AVVNGFCRVGELDQAKKMLQQMYHHGC------KPNT--VSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNA----IT  411 (701)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~  411 (701)
                      .....+...|+++++..++......--      .+..  .....+...+...|+++.|...+++........+.    ..
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            344455677888888888877654210      1111  11222334456788899998888887653111121    23


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CH
Q 037695          412 YSVVMHGLRREGKLSEACDVVREMVKK----GFF-PTPVEINLLIQSLCREGKMDGAKKFMQECLNK----GCA--V-NV  479 (701)
Q Consensus       412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~  479 (701)
                      .+.+...+...|++++|...+.+....    |.. ....++..+...+...|+++.|...+++....    +..  + ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            445556677789999998888877643    111 11234455666778889999998888776552    211  1 22


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH--H
Q 037695          480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCK--KDP--DTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVPTVV--T  551 (701)
Q Consensus       480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--~  551 (701)
                      ..+..+...+...|++++|...+.+.....  ..+  ....+..+...+...|+++.|...+..+...  .......  .
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~  653 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA  653 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence            334455566777799999988888765421  112  1334445666777889999998888877542  1111111  0


Q ss_pred             H--HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHH
Q 037695          552 Y--RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R----TAYNQVIENLCSFGYLEEAGKILGKVLRTA----SKAD-AST  619 (701)
Q Consensus       552 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~  619 (701)
                      .  ...+..+...|+.+.|.+++.......+. .    ..+..++.++...|++++|...+++++...    ..++ ..+
T Consensus       654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~  733 (903)
T PRK04841        654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN  733 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            0  11223445578888888887766543211 1    113456777888899999999988876642    1111 235


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695          620 CHVLVESYLNKGIPLLAYKVACRMFNR  646 (701)
Q Consensus       620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  646 (701)
                      ...++.++...|+.++|...+.++++.
T Consensus       734 ~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        734 LILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            566777888999999999999888873

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.96  E-value=0.0002  Score=83.46  Aligned_cols=336  Identities=13%  Similarity=0.067  Sum_probs=215.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCh--hhHHHHHHHH
Q 037695          348 GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWT------PNA--ITYSVVMHGL  419 (701)
Q Consensus       348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~--~~~~~ll~~~  419 (701)
                      .....|+++.+..++..+.......+..........+...|+++++..++......--.      +..  .....+...+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            34456777777777665532111112222333444556789999999988877542111      111  1122233445


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHH
Q 037695          420 RREGKLSEACDVVREMVKKGFFPTP----VEINLLIQSLCREGKMDGAKKFMQECLNKGC---AV--NVVNFTSLIRGFC  490 (701)
Q Consensus       420 ~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~  490 (701)
                      ...|++++|...+++....-...+.    ...+.+...+...|+++.|...+.+......   .+  ....+..+...+.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            6799999999999988763111121    2345566677889999999999988765311   11  1234555667788


Q ss_pred             hcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 037695          491 QKGDLEEALSLLDDMYL----CKKD--P-DTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVP--TVVTYRTVIHRY  559 (701)
Q Consensus       491 ~~g~~~~A~~~~~~~~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~~  559 (701)
                      ..|+++.|...+++...    .+..  + ....+..+...+...|++++|...+.+....  ...+  ....+..+...+
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            99999999999887654    2211  1 2233455666777889999999999887653  1112  233455566778


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC---hhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 037695          560 CQVGRVEDLLKLLEKMLSKQKC---RTAY-----NQVIENLCSFGYLEEAGKILGKVLRTASKADA---STCHVLVESYL  628 (701)
Q Consensus       560 ~~~g~~~~A~~~~~~~~~~~p~---~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~  628 (701)
                      ...|+++.|...+..+......   ...+     ...+..+...|+.+.|..++............   ..+..++.++.
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            8899999999999888653211   1111     11224445689999999998776542211111   12456777899


Q ss_pred             hcCChhhHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          629 NKGIPLLAYKVACRMFNR----NLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ..|++++|...++++...    +..++ ..+...++.++.+.|+.++|...+.++.+...
T Consensus       703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            999999999999988763    22222 24566778889999999999999999987653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=3.2e-06  Score=77.38  Aligned_cols=190  Identities=15%  Similarity=0.047  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695          482 FTSLIRGFCQKGDLEEALSLLDDMYLC-KKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC  560 (701)
Q Consensus       482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  560 (701)
                      +|.-...+.+.++++.|.+.+-.|.-. .-..|++|...+.-. ...+++-+..+-+..+...+ |-...|+..++-.||
T Consensus       244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC  321 (459)
T KOG4340|consen  244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC  321 (459)
T ss_pred             hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence            444444566778888888877777421 123355554433211 23455555566666666654 345678888888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCC---
Q 037695          561 QVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCS-FGYLEEAGKILGKVLRTASKADASTCHVLVES--YLNKGI---  632 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~---  632 (701)
                      +..-++.|..++.+-....-.  .+-...+++++.. .-..++|.+-++.+...-   -...-...+..  -..+.+   
T Consensus       322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a  398 (459)
T KOG4340|consen  322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEA  398 (459)
T ss_pred             hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHH
Confidence            888887777666432211000  1112234444442 345556555544432110   00000011111  111111   


Q ss_pred             hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          633 PLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       633 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      ...|++-|+..++.    -.++....++.|++..++..+.+.|.+-.+
T Consensus       399 ~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  399 IRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            11233334433331    124455667788899999999999987765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.93  E-value=1.1e-05  Score=82.51  Aligned_cols=303  Identities=11%  Similarity=0.025  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 037695          339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGC-KPNTV-SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVM  416 (701)
Q Consensus       339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll  416 (701)
                      ...|..+...+...|+.+.+...+........ .++.. ........+...|++++|..++++..+.. +.+...+.. .
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~   83 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence            44566666777777888887777766654321 12221 12222335567899999999999988753 334444442 2


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          417 HGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK  492 (701)
Q Consensus       417 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  492 (701)
                      ..+..    .+....+...+... ....+........+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~  161 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence            22222    44555555555441 11122233455566678889999999999999999874 44677788889999999


Q ss_pred             CCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 037695          493 GDLEEALSLLDDMYLCKK-DPDT--VTYTTIIDALSKNGRVEEATELMMKMLSKGL-VPTVVTY-R--TVIHRYCQVGRV  565 (701)
Q Consensus       493 g~~~~A~~~~~~~~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~  565 (701)
                      |++++|...+++...... .|+.  ..|..+...+...|++++|..++++...... .+..... .  .++..+...|..
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  241 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV  241 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence            999999999999876432 1232  3456788889999999999999999865432 1222211 1  333344445544


Q ss_pred             HHHHHH--H-HHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C-----CHHHHHHHHHHHHhcC
Q 037695          566 EDLLKL--L-EKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK---A-----DASTCHVLVESYLNKG  631 (701)
Q Consensus       566 ~~A~~~--~-~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g  631 (701)
                      ..+.+.  + .......+.   .......+.++...|+.++|..+++.+......   -     ...........+...|
T Consensus       242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g  321 (355)
T cd05804         242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG  321 (355)
T ss_pred             ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence            433333  2 221111121   122235677788899999999999888653322   0     1222333445678999


Q ss_pred             ChhhHHHHHHHHHh
Q 037695          632 IPLLAYKVACRMFN  645 (701)
Q Consensus       632 ~~~~A~~~~~~~~~  645 (701)
                      ++++|+..+..++.
T Consensus       322 ~~~~A~~~L~~al~  335 (355)
T cd05804         322 NYATALELLGPVRD  335 (355)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999888876

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.92  E-value=1.2e-07  Score=91.77  Aligned_cols=169  Identities=14%  Similarity=0.076  Sum_probs=91.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH---HHHHHHHHHhcCCH
Q 037695          522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA---YNQVIENLCSFGYL  598 (701)
Q Consensus       522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~  598 (701)
                      ..+...|++++|++++...      .+.+.....+..|.+.++++.|.+.++.|.+...+...   ..+++..+.-..++
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~  183 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY  183 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH
Confidence            3444556666666665431      34555555666666667777777777666655444211   11222222222356


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHH
Q 037695          599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKS-EEADTLMLR  677 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~  677 (701)
                      .+|..+|+++.+ .+.+++.+.+.++.++...|++++|.+.+++++..+.. +..+...++.+....|+. +.+.+++.+
T Consensus       184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            667777766544 34556666666666666677777777666666653332 335555556566666666 455566666


Q ss_pred             HHHcCCCCCchHHHHhhhhhh
Q 037695          678 FVERGHIQPKSEEHLQRQRVF  698 (701)
Q Consensus       678 ~~~~~~~~~~~~~~l~~~~~~  698 (701)
                      +.+..|.+|-....-.....|
T Consensus       262 L~~~~p~h~~~~~~~~~~~~F  282 (290)
T PF04733_consen  262 LKQSNPNHPLVKDLAEKEAEF  282 (290)
T ss_dssp             CHHHTTTSHHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHH
Confidence            666666555554444443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=4.9e-07  Score=92.83  Aligned_cols=225  Identities=16%  Similarity=0.097  Sum_probs=178.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695          440 FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT  519 (701)
Q Consensus       440 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  519 (701)
                      .+|-...-..+...+...|-...|..++++.         ..|..++.+|+..|+..+|..+..+-.+  -+|+...|..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~  462 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL  462 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence            3444445566777788889999999998854         4577788899999999999998888776  4788888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL  598 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  598 (701)
                      +++......-+++|.++.+.....       +-..+.....+.++++++.+.|+...+.+|- ..+|..++.+..+.+++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence            888877777788888887765432       2233333344578999999999999888887 78898899888999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      +.|.+.|.......+ .+...||.+..+|.+.|+..+|...++++.+.+-. +..++....-...+.|.+++|.+.+.++
T Consensus       536 q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            999999999887653 36788999999999999999999999999997633 4466666666788899999999999988


Q ss_pred             HHcCCC
Q 037695          679 VERGHI  684 (701)
Q Consensus       679 ~~~~~~  684 (701)
                      .+....
T Consensus       614 l~~~~~  619 (777)
T KOG1128|consen  614 LDLRKK  619 (777)
T ss_pred             HHhhhh
Confidence            776543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=2.7e-07  Score=92.34  Aligned_cols=97  Identities=14%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 037695          512 PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIE  590 (701)
Q Consensus       512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~  590 (701)
                      +|...+..|.-.|.-.|.+++|+..|+..+... |-|..+|+.|...++...+.++|+..|.++++..|. +.+...|+-
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI  506 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI  506 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence            444455555555555555555555555555532 334445555555555555555555555555555555 445555555


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 037695          591 NLCSFGYLEEAGKILGKVL  609 (701)
Q Consensus       591 ~~~~~g~~~~A~~~~~~~~  609 (701)
                      .|...|.+++|...|-.++
T Consensus       507 S~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  507 SCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             hhhhhhhHHHHHHHHHHHH
Confidence            5555555555555555443

>PLN02789 farnesyltranstransferase

Probab=98.89  E-value=2.3e-06  Score=83.96  Aligned_cols=218  Identities=14%  Similarity=0.060  Sum_probs=130.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 037695          457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG-DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRV--EEA  533 (701)
Q Consensus       457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A  533 (701)
                      .+..++|+.++.+++... +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+.  +++
T Consensus        50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence            445556666666665542 223444554444555555 4677777777776643 33444555554444455542  566


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc---CC----HHHHHHHH
Q 037695          534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF---GY----LEEAGKIL  605 (701)
Q Consensus       534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~----~~~A~~~~  605 (701)
                      +.+++++++.. +-+..+|.....++...|+++++++.++++++.+|. ..+|+.....+.+.   |.    .++++...
T Consensus       128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~  206 (320)
T PLN02789        128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT  206 (320)
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence            77777777654 445667777777777777777777777777777666 55666665555443   22    24566666


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---------------
Q 037695          606 GKVLRTASKADASTCHVLVESYLNK----GIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEG---------------  666 (701)
Q Consensus       606 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------  666 (701)
                      .+++...+. |...|+.+...+...    ++..+|...+.+..+.++. +......+++.|....               
T Consensus       207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~  284 (320)
T PLN02789        207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAE  284 (320)
T ss_pred             HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence            677666543 666777777766663    3345577777666653222 3456666777776422               


Q ss_pred             ---CHHHHHHHHHHHH
Q 037695          667 ---KSEEADTLMLRFV  679 (701)
Q Consensus       667 ---~~~~A~~~~~~~~  679 (701)
                         ..++|..+++.+.
T Consensus       285 ~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        285 ELSDSTLAQAVCSELE  300 (320)
T ss_pred             ccccHHHHHHHHHHHH
Confidence               3467888888774

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=3.8e-07  Score=91.25  Aligned_cols=251  Identities=16%  Similarity=0.112  Sum_probs=176.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA  498 (701)
Q Consensus       419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A  498 (701)
                      +.+.|++.+|.-.|+..++.. |-+...|..|....+..++-..|+..++++++.. +.+......|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence            456777777777777777764 4456677777777777777778888888887763 44667777777778888888888


Q ss_pred             HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          499 LSLLDDMYLCKKD--------PDTVTYTTIIDALSKNGRVEEATELMMKMLS-KGLVPTVVTYRTVIHRYCQVGRVEDLL  569 (701)
Q Consensus       499 ~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~  569 (701)
                      ++.++.-+....+        ++...-..  ..+..........++|-++.. .+..+|+.....|.-.|.-.|++++|.
T Consensus       373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            8887776542210        00000000  111112223344555555544 454578888899999999999999999


Q ss_pred             HHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-
Q 037695          570 KLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN-  647 (701)
Q Consensus       570 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  647 (701)
                      ..|+.++...|+ ...||.|+..++...+.++|+..|.+++++.+..-. +...|+-.|...|.+++|.+.|-.++... 
T Consensus       451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~  529 (579)
T KOG1125|consen  451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEALSMQR  529 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            999999999998 789999999999999999999999999997654333 34467778999999999999988776521 


Q ss_pred             --------CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037695          648 --------LIPDLKLCKKVSERLILEGKSEEADTL  674 (701)
Q Consensus       648 --------~~p~~~~~~~l~~~~~~~g~~~~A~~~  674 (701)
                              ..++..+|..|-.++...++.+-+.+.
T Consensus       530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence                    112234666666666667776645443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.87  E-value=7.2e-07  Score=81.49  Aligned_cols=121  Identities=10%  Similarity=0.063  Sum_probs=59.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--hhhHH
Q 037695          562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGI--PLLAY  637 (701)
Q Consensus       562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~  637 (701)
                      .++.+++...+++.+..+|+ ...|..++..|...|++++|...|+++++..+. +...+..++.+ +...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            34444555555555544444 445555555555555555555555555554422 44444444443 234444  24555


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          638 KVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       638 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                      .+++++++.+.. +...+..++..+.+.|++++|+..|+++++..+.
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            555555552222 2344455555555555555555555555555443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.86  E-value=5.1e-07  Score=86.28  Aligned_cols=186  Identities=12%  Similarity=0.060  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---
Q 037695          477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-T---VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV---  549 (701)
Q Consensus       477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---  549 (701)
                      .....+..+...+...|+++.|...|+++...  .|+ .   ..+..+..++...|++++|...++++.+.. +.+.   
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~  107 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD  107 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence            35566777777888888888888888888764  333 1   356677788888888888888888888753 2122   


Q ss_pred             HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695          550 VTYRTVIHRYCQV--------GRVEDLLKLLEKMLSKQKCRT-AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTC  620 (701)
Q Consensus       550 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  620 (701)
                      .++..+..++...        |++++|.+.++++....|... .+..+.....    ....   .           ....
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~---~-----------~~~~  169 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR---L-----------AGKE  169 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH---H-----------HHHH
Confidence            2455555555554        678888888888888877732 2222211110    0000   0           0011


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          621 HVLVESYLNKGIPLLAYKVACRMFNRNL-IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       621 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ..++..|...|++.+|+..++++.+... .|. ...+..++.++.+.|++++|..+++.+....+
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            2566778999999999999999998433 232 36788899999999999999999998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.84  E-value=2.6e-06  Score=93.38  Aligned_cols=233  Identities=13%  Similarity=0.090  Sum_probs=183.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695          441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV-----NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV  515 (701)
Q Consensus       441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  515 (701)
                      |-....|-..|......++.++|.++.++++.. +.+     -...|.++++.-...|.-+...++|+++.+.  .-...
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence            445567888888888999999999999988764 211     2456888888888888888899999999873  33356


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHH
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENL  592 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~  592 (701)
                      .|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-|.   .......+..-
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            7889999999999999999999999986 3356788999999999999999999999999988777   34455667777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHH
Q 037695          593 CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL--KLCKKVSERLILEGKSEE  670 (701)
Q Consensus       593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~  670 (701)
                      .+.|+.+.+..+|+..+...++ -...|+.++.+-.++|+.+.+..+|+++...++.|..  ..|..++..=-..|+-..
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            7899999999999999886544 6678999999999999999999999999998887764  556655544445566444


Q ss_pred             HHHHHHHH
Q 037695          671 ADTLMLRF  678 (701)
Q Consensus       671 A~~~~~~~  678 (701)
                      +..+=.++
T Consensus      1690 vE~VKarA 1697 (1710)
T KOG1070|consen 1690 VEYVKARA 1697 (1710)
T ss_pred             HHHHHHHH
Confidence            43333333

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=1.4e-06  Score=89.50  Aligned_cols=219  Identities=13%  Similarity=0.044  Sum_probs=182.6

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          407 PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI  486 (701)
Q Consensus       407 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  486 (701)
                      |--..-..+...+...|-...|..+++++.         .+..++.+|+..|+..+|..+..+-.++  +|++..|..+.
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG  464 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG  464 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence            333344556778888999999999998653         4567888999999999999999888874  78999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037695          487 RGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVE  566 (701)
Q Consensus       487 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~  566 (701)
                      +......-+++|.++++.....       .-..+.......+++.++.+.|+.-.+.. +.-..+|..+..+..+.+++.
T Consensus       465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence            9888888899999999876432       11122222344789999999999887764 556788998988999999999


Q ss_pred             HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .|.+.|...+...|+ ...|+++..+|.+.|+..+|...++++++.+ ..+..+|...+-....-|.++.|++.+.++.+
T Consensus       537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            999999999999999 7899999999999999999999999999988 55778888888888999999999999999887

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=1e-05  Score=74.23  Aligned_cols=195  Identities=14%  Similarity=0.153  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 037695          144 YYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT-AIHVLV  222 (701)
Q Consensus       144 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~  222 (701)
                      +.+++..+.+..++.+|.+++....++. +.+....+.+..+|-+..++..|-.+|+++-..  .|...-|.. -.+.+-
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            4455555566666666666666655543 224555566666666666666666666666543  233332221 234444


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHH--HHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 037695          223 VGNKLAKALRFLERMQLAGITPNVLTYNCLIK--GYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV  300 (701)
Q Consensus       223 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a  300 (701)
                      +.+.+..|+.+...|...   |+...-..-+.  .....+++..+..++++....|   +..+.+...-...+.|+++.|
T Consensus        90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence            556666666666665532   22211111111  1223455555666665554322   222222222223344444444


Q ss_pred             HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          301 RDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCK  371 (701)
Q Consensus       301 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  371 (701)
                      .+-|+...+                      -.|..| ...|+..+ ++.+.|+++.|++...+++++|++
T Consensus       164 vqkFqaAlq----------------------vsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  164 VQKFQAALQ----------------------VSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHHHHHh----------------------hcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence            444444333                      123333 34455443 445567777777777777777654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.81  E-value=0.00023  Score=71.17  Aligned_cols=444  Identities=12%  Similarity=0.131  Sum_probs=253.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037695          137 YRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT  216 (701)
Q Consensus       137 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  216 (701)
                      .|-|..+|+.||+-+... .++++.+.++++... .+..+..|..-|..-.+..+++....+|.+....  ..+...|..
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l   91 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL   91 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence            477888999999877666 889999999998875 4567888999999988999999999999887754  355667777


Q ss_pred             HHHHHHc-cCCHhH----HHHHHHH-HHhCCCCCCh-HHHHHHHHH---------HHhcCChhHHHHHHHHchhCCCCC-
Q 037695          217 AIHVLVV-GNKLAK----ALRFLER-MQLAGITPNV-LTYNCLIKG---------YCDLHRIKDAIKLIDEMPLKGCSP-  279 (701)
Q Consensus       217 ll~~~~~-~g~~~~----A~~~~~~-m~~~g~~~~~-~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-  279 (701)
                      -|..--+ .|+...    ..+.|+- +.+.|+.+-. ..|+.-+..         |..+.+++...+++.++...-+.- 
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            6665443 233222    2223333 2334544332 234443322         334456677778888877542110 


Q ss_pred             -----CHHHHHHHHHHHH-------HcCChhHHHHHHHHHHhc-------CCCCCCCCcHHHHHH--HHHHHHHc----C
Q 037695          280 -----DKVSYYTVMGYLC-------KEKRIKEVRDLMEKMVND-------SNLFHDQGRIEEAKE--LVNQMSQM----G  334 (701)
Q Consensus       280 -----d~~~~~~ll~~~~-------~~g~~~~a~~~~~~~~~~-------~~~~~~~g~~~~a~~--~~~~~~~~----~  334 (701)
                           |-.+|..-|....       +...+..|+++++++...       ....|..|.-++..+  ++...++.    +
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp  251 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP  251 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence                 1111211111111       122334444444444321       122233333333222  22212111    1


Q ss_pred             CC-cCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHH-H----HHHHHHHhcCC-------HHHHHHHHHHH
Q 037695          335 CI-PDVVTYTAVVNGFCRVGELDQAKKMLQQ-MYHHGCKPNTVSY-T----AFLNGLCHNGK-------SLEAREMINTS  400 (701)
Q Consensus       335 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~-~----~li~~~~~~g~-------~~~A~~~~~~~  400 (701)
                      +. .+......            ...-++++ |.-.+..|+.... .    ..-+.+...|+       .+++..+++..
T Consensus       252 L~t~~~~~~~~------------Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~  319 (656)
T KOG1914|consen  252 LRTLDGTMLTR------------RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA  319 (656)
T ss_pred             cccccccHHHH------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH
Confidence            11 00000000            00001111 1111222221110 0    01112233333       34555566655


Q ss_pred             HhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          401 EEEWWTPNAITYSVVMHGLRR---EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV  477 (701)
Q Consensus       401 ~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  477 (701)
                      ...-...+..+|..+...--.   .+..+....++++++..-..--..+|..++....+..-+..|..+|.++.+.+..+
T Consensus       320 I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~  399 (656)
T KOG1914|consen  320 IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR  399 (656)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence            543222333344333322111   12356667777777665333334567788888888888999999999999887766


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 037695          478 -NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRT  554 (701)
Q Consensus       478 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~  554 (701)
                       ++.++++++.-||. ++..-|.++|+--++.- .-+..--...+.-+...++-..|..+|++....+++|+  ...|..
T Consensus       400 hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r  477 (656)
T KOG1914|consen  400 HHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR  477 (656)
T ss_pred             chhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence             78888888887775 77899999999866531 22333345567777888999999999999999866665  578999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC--h---hHHHHHHHHHHhcCCH
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC--R---TAYNQVIENLCSFGYL  598 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~  598 (701)
                      ++.--+.-|+...+.++-+++....|.  .   ..-..+++.|.-.+.+
T Consensus       478 ~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~  526 (656)
T KOG1914|consen  478 MLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY  526 (656)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence            999999999999999998888776652  1   2334455555544443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.81  E-value=0.00023  Score=71.14  Aligned_cols=149  Identities=16%  Similarity=0.187  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          495 LEEALSLLDDMYLCK-KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP-TVVTYRTVIHRYCQVGRVEDLLKLL  572 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  572 (701)
                      .+.....++++...- +.| ..+|..+++.-.+..-+..|..+|.++.+.+..+ +...+++++.-+| .++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence            555566666665422 233 3467777777778888889999999999887666 6677777777665 57888999999


Q ss_pred             HHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          573 EKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       573 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +.-+++.++ +.-....++-+...|+-..|..+|++++.....++  ..+|..++.-=..-|+...++++-+++..
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            988888888 44456788888888999999999999988744444  46888999888888999998888887766

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.80  E-value=0.00041  Score=73.72  Aligned_cols=223  Identities=10%  Similarity=0.031  Sum_probs=140.9

Q ss_pred             CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 037695          119 ADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYV  198 (701)
Q Consensus       119 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  198 (701)
                      ++++.|+.-...+.++++..+-+.++.++.  +.|.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..+
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence            567889998888888864443333343333  56889999999999888776654 888999999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC----------hhHHHHH
Q 037695          199 LSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR----------IKDAIKL  268 (701)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~  268 (701)
                      |+.....  .|+......+..+|++.+.+.+-.++--+|.+. ++-+.+.+=++++.+...-.          ..-|.+.
T Consensus       100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen  100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            9999865  577888888889999988877666555555543 34455555555555554221          1224445


Q ss_pred             HHHchhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037695          269 IDEMPLKG-CSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVN  347 (701)
Q Consensus       269 ~~~m~~~g-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  347 (701)
                      ++.+.+.+ .--...-...-...+-..|++++|..++..                      ...+.-...+...-+.-+.
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~----------------------~la~~l~~~~~~l~~~~~d  234 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI----------------------TLAEKLTSANLYLENKKLD  234 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH----------------------HHHHhccccchHHHHHHHH
Confidence            55554432 111111112222233344444444444421                      1112222234444455667


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcC
Q 037695          348 GFCRVGELDQAKKMLQQMYHHG  369 (701)
Q Consensus       348 ~~~~~g~~~~a~~~~~~~~~~~  369 (701)
                      .+...+++.+..++-.++...|
T Consensus       235 llk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  235 LLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHhcChHHHHHHHHHHHHhC
Confidence            7777888888888888887765

>PLN02789 farnesyltranstransferase

Probab=98.75  E-value=1.8e-05  Score=77.84  Aligned_cols=206  Identities=10%  Similarity=0.045  Sum_probs=141.0

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--H
Q 037695          420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG-KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL--E  496 (701)
Q Consensus       420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~  496 (701)
                      ...++.++|+.+..++++.. +-+..+|+..-..+...| ++++++..++.+.... +-+..+|+.....+.+.|+.  +
T Consensus        48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence            34556677777777777663 333445555555555556 5678888888777663 33555666555555555553  6


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 037695          497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV---GR----VEDLL  569 (701)
Q Consensus       497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~  569 (701)
                      +++.+++.+.+.. +-+..+|+....++...|+++++++.++++++.+ +-+..+|+.....+.+.   |.    .++++
T Consensus       126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el  203 (320)
T PLN02789        126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL  203 (320)
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence            7788888887654 4467788888888888888999999999988875 44566676666555544   22    25678


Q ss_pred             HHHHHHHhcCCC-hhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          570 KLLEKMLSKQKC-RTAYNQVIENLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK  630 (701)
Q Consensus       570 ~~~~~~~~~~p~-~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  630 (701)
                      .+..+++...|. ..+|+.+...+..    .++..+|...+.++...+ ..++..+..|+..|+..
T Consensus       204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence            888888888887 6788888888877    345577888888877654 33667777888888763

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.74  E-value=1.6e-06  Score=82.82  Aligned_cols=188  Identities=15%  Similarity=0.069  Sum_probs=133.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--H
Q 037695          441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV---VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT--V  515 (701)
Q Consensus       441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~  515 (701)
                      ......+..+...+...|+++.|...++.+.... +.+.   ..+..+..++...|++++|+..++++.+.......  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3456678888888999999999999999998763 2222   46677889999999999999999999874321111  2


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHH
Q 037695          516 TYTTIIDALSKN--------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQ  587 (701)
Q Consensus       516 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  587 (701)
                      ++..+..++...        |++++|.+.|+.+.... +-+...+..+.....    ....       .     ......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~-------~-----~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR-------L-----AGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH-------H-----HHHHHH
Confidence            455566666654        78899999999998863 223333322221111    0000       0     011235


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVESYLNKGIPLLAYKVACRMFNR  646 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  646 (701)
                      ++..+.+.|++.+|+..++++++..+.  .....+..++.++.+.|++++|..+++.+..+
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            677788999999999999999886432  23567889999999999999999998888763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.71  E-value=6.1e-07  Score=77.49  Aligned_cols=93  Identities=12%  Similarity=-0.051  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK  630 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  630 (701)
                      +..+...+...|++++|...|+.++...|. ...+..++.++...|++++|+..|+++++..+ .++..+..++.++...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence            444556666667777777777766666665 55666666666666777777777766666543 3566666666666666


Q ss_pred             CChhhHHHHHHHHHh
Q 037695          631 GIPLLAYKVACRMFN  645 (701)
Q Consensus       631 g~~~~A~~~~~~~~~  645 (701)
                      |++++|+..++++++
T Consensus       106 g~~~eAi~~~~~Al~  120 (144)
T PRK15359        106 GEPGLAREAFQTAIK  120 (144)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666666666666

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.70  E-value=2.6e-06  Score=92.23  Aligned_cols=133  Identities=11%  Similarity=0.024  Sum_probs=109.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI  589 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~  589 (701)
                      ..+...+..|..+..+.|++++|..+++...+.. |-+......++..+.+.+++++|+..+++.+...|+ ......++
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            4567788888888888999999999998888852 334556677788888889999999999999888888 67778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .++...|++++|..+|++++..+ +-+..++.+++..+.+.|+.++|...|+++.+
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888999999999999988733 33578888888888889999999999988887

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.69  E-value=4e-06  Score=76.60  Aligned_cols=117  Identities=9%  Similarity=0.095  Sum_probs=83.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH-HhcCC--HHHHH
Q 037695          527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL-CSFGY--LEEAG  602 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~  602 (701)
                      .++.+++...++..+... +.+...|..+...|...|++++|...|+++....|+ ...+..++.++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            455566666666666654 556777777777777777777777777777777776 56666677654 45565  47777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ++++++++..+. +...+..++..+.+.|++++|+..++++++
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            777777776544 666777777777777777777777777777

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=1.2e-05  Score=72.28  Aligned_cols=186  Identities=18%  Similarity=0.122  Sum_probs=127.5

Q ss_pred             cCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037695          457 EGKMDGAKKFMQECLNK---G-CAVNVV-NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVE  531 (701)
Q Consensus       457 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  531 (701)
                      ..+.++..+++..+...   | ..++.. .|..++-+....|+.+.|...++++...- +.+...-..-.--+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            45677788877777542   3 334433 34556666677788888888888877642 222222222222345678888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      +|+++|+.+++.+ |.|..++-.=+...-..|+.-+|++-+...++..+. ..+|..+...|...|++++|.-.+++++-
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            8888888888775 556666666565666677777888888777777665 78888888888888888888888888876


Q ss_pred             cCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHh
Q 037695          611 TASKADASTCHVLVESYLNKG---IPLLAYKVACRMFN  645 (701)
Q Consensus       611 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~  645 (701)
                      .. +.++..+..++..+...|   +.+.|.++|++.++
T Consensus       183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            55 346667777777766655   56678888888888

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.63  E-value=1.5e-06  Score=74.79  Aligned_cols=115  Identities=16%  Similarity=0.004  Sum_probs=72.3

Q ss_pred             HHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 037695          571 LLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI  649 (701)
Q Consensus       571 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  649 (701)
                      .+++++...|. ......++..+...|++++|...++.+...+ +.++..+..++..+...|++++|...++++.+.+..
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44555555555 3445556666666677777777776666654 235666666667777777777777777766663222


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          650 PDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       650 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                       +...+..++.++...|++++|..+++++++..+..+.
T Consensus        84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 -DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence             3455666666777777777777777777776665444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.62  E-value=3.1e-05  Score=85.35  Aligned_cols=223  Identities=15%  Similarity=0.099  Sum_probs=174.8

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695          406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKK-GFFPT---PVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVN  481 (701)
Q Consensus       406 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  481 (701)
                      +-+...|-..|....+.++.++|.++.++++.. ++.-.   ...|.++++.-..-|.-+...++|+++.+.. . ....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence            345567888888888899999999999888765 11111   2356777777777788888999999987752 2 3456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 037695          482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT---VVTYRTVIHR  558 (701)
Q Consensus       482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~  558 (701)
                      |..|...|.+.+++++|.++|+.|.+. +......|...+..+.+..+-+.|..++.+.++.  -|.   .......+..
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence            788999999999999999999999875 3456788999999999999999999999999874  343   3344555666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCh
Q 037695          559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA--STCHVLVESYLNKGIP  633 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~  633 (701)
                      -.+.|+.+.+..+|+..+..+|. ...|+.+++.-.++|+.+.+..+|++++..++.|..  ..|...+..=-+.|+-
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence            77899999999999999999998 789999999999999999999999999998876654  3344444433444543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.62  E-value=1.3e-05  Score=72.91  Aligned_cols=156  Identities=18%  Similarity=0.139  Sum_probs=101.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695          483 TSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV  562 (701)
Q Consensus       483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  562 (701)
                      ..+-..+...|+-+.+..+....... ...|......++....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            44555566666666666666654332 12333444556666677777777777777776653 66677777777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 037695          563 GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVAC  641 (701)
Q Consensus       563 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  641 (701)
                      |+++.|..-|.+..+..|. +.+++.++..|.-.|+.+.|..++......+ .-|..+-..|.......|++.+|..+..
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            7777777777777777666 5666777777777777777777777765543 3356666666667777777777766654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.61  E-value=1.4e-06  Score=75.24  Aligned_cols=113  Identities=10%  Similarity=-0.062  Sum_probs=57.8

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695          571 LLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP  650 (701)
Q Consensus       571 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  650 (701)
                      ++++.++.+|..  +..++..+...|++++|...|+.++...+ .+...|..++.++...|++++|+..|+++..  +.|
T Consensus        15 ~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p   89 (144)
T PRK15359         15 ILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDA   89 (144)
T ss_pred             HHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCC
Confidence            444444444432  33344555555555555555555555432 2455555555555555555555555555555  223


Q ss_pred             -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695          651 -DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS  688 (701)
Q Consensus       651 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  688 (701)
                       +...+..++.++.+.|++++|+..|.++++..|..+..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~  128 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW  128 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence             23455555555555555555555555555555544433

>PF12854 PPR_1: PPR repeat

Probab=98.60  E-value=7.3e-08  Score=58.86  Aligned_cols=32  Identities=53%  Similarity=1.035  Sum_probs=21.0

Q ss_pred             CCCCChHHHHHHHHHHHhcCChhHHHHHHHHc
Q 037695          241 GITPNVLTYNCLIKGYCDLHRIKDAIKLIDEM  272 (701)
Q Consensus       241 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  272 (701)
                      |+.||..||+.||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55666666666666666666666666666665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.59  E-value=1.5e-05  Score=72.52  Aligned_cols=157  Identities=17%  Similarity=0.119  Sum_probs=88.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695          448 NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN  527 (701)
Q Consensus       448 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~  527 (701)
                      ..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...|++..... ++|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            44444555555555555555543332 23344445555666666666666666666665432 45556666666666666


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          528 GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILG  606 (701)
Q Consensus       528 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~  606 (701)
                      |+++.|..-|.+..+.. +-++..++.+...+.-.|+++.|..++.......+. ..+-..++......|++.+|..+..
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            66666666666666542 233445555655666666666666666666554442 4455556666666666666666654


Q ss_pred             H
Q 037695          607 K  607 (701)
Q Consensus       607 ~  607 (701)
                      .
T Consensus       227 ~  227 (257)
T COG5010         227 Q  227 (257)
T ss_pred             c
Confidence            4

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=0.0001  Score=66.48  Aligned_cols=190  Identities=17%  Similarity=0.151  Sum_probs=148.5

Q ss_pred             hcCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037695          421 REGKLSEACDVVREMVKK---G-FFPTPV-EINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL  495 (701)
Q Consensus       421 ~~g~~~~A~~~~~~m~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  495 (701)
                      ...+.++..+++.+++..   | ..++.. .|..++-+....|+.+-|...++.+... ++-+..+-..-...+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence            356789999999988753   4 445544 4566777778899999999999998877 344444433333445668999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          496 EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKM  575 (701)
Q Consensus       496 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  575 (701)
                      ++|+++++.+.+.. +-|..++..=+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999999998865 556677776666777788888999988888886 6789999999999999999999999999999


Q ss_pred             HhcCCCh-hHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCC
Q 037695          576 LSKQKCR-TAYNQVIENLCSF---GYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       576 ~~~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~  613 (701)
                      +-.+|.. ..+..++..+...   .+++.|.++|.++++..+
T Consensus       181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            9999984 4455677766544   467889999999988654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.52  E-value=4.6e-05  Score=82.76  Aligned_cols=145  Identities=13%  Similarity=0.141  Sum_probs=122.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037695          475 CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYR  553 (701)
Q Consensus       475 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  553 (701)
                      .+.++..+..|.....+.|.+++|..+++...+  +.|+ ......++.++.+.+++++|...+++..... +-+.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence            455788888899999999999999999999988  4565 4567778889999999999999999999865 55677788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                      .+..++.+.|++++|..+|+++...+|+ ..++..++..+...|+.++|...|+++++.. .+....|+.+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            8889999999999999999999988877 7889999999999999999999999998864 3344444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.49  E-value=6e-06  Score=70.99  Aligned_cols=115  Identities=15%  Similarity=0.084  Sum_probs=80.6

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          536 LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       536 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      .++++.... +.+......+...+...|++++|.+.++.+...+|. ...+..++..+...|++++|..+++++++.. +
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p   82 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P   82 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence            344455432 223445566667777788888888888887777765 6677777888888888888888888877765 3


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhh
Q 037695          615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKL  654 (701)
Q Consensus       615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  654 (701)
                      .+...+..++..|...|++++|+..+++.++  ..|+...
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~  120 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE  120 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence            3566777777788888888888888888877  4454433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12854 PPR_1: PPR repeat

Probab=98.49  E-value=2e-07  Score=56.91  Aligned_cols=32  Identities=44%  Similarity=1.057  Sum_probs=16.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          474 GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDM  505 (701)
Q Consensus       474 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~  505 (701)
                      |+.||..+||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44455555555555555555555555555544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.48  E-value=0.0034  Score=67.03  Aligned_cols=190  Identities=12%  Similarity=0.056  Sum_probs=127.8

Q ss_pred             HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695          115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN  194 (701)
Q Consensus       115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  194 (701)
                      +-+.|..+.|+.+.+-.....  +.|..+...+-.+|...++.++|..+|++.....  |+......+..+|.|.+++.+
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence            345789999998877443322  4588899999999999999999999999998754  778888889999999998876


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHhHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCChh
Q 037695          195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGN----------KLAKALRFLERMQLAG-ITPNVLTYNCLIKGYCDLHRIK  263 (701)
Q Consensus       195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~  263 (701)
                      -.++--++.+. .+.+++.+-++++.+...-          -..-|...++.+.+.+ .--+..-...-...+-..|.++
T Consensus       129 qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~  207 (932)
T KOG2053|consen  129 QQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ  207 (932)
T ss_pred             HHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence            55444444332 2455666666666665431          1334566677766543 1112222222234556788999


Q ss_pred             HHHHHHH-HchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037695          264 DAIKLID-EMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVN  309 (701)
Q Consensus       264 ~A~~~~~-~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  309 (701)
                      +|.+++. ...+.-..-+...-+.-+..+...+++.+..++..++..
T Consensus       208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            9999994 333332333455555667778888888888877777765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=5e-05  Score=75.16  Aligned_cols=140  Identities=18%  Similarity=0.181  Sum_probs=102.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695          523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  601 (701)
                      .+...|.+++|...++.++.. .|-|+..+......+.+.++.++|.+.+++++...|. ....-.++.+|.+.|++.+|
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence            345667788888888887765 3455666666677788888888888888888888887 55666778888888888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      +.+++...... +-|+..|..|..+|...|+..+|..                  ..+..|.-.|++++|+..+..+.++
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~------------------A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL------------------ARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH------------------HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            88888877755 4478888888888888887665543                  2344566677888888888777776


Q ss_pred             C
Q 037695          682 G  682 (701)
Q Consensus       682 ~  682 (701)
                      .
T Consensus       455 ~  455 (484)
T COG4783         455 V  455 (484)
T ss_pred             c
Confidence            6

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.44  E-value=1.1e-05  Score=70.11  Aligned_cols=125  Identities=16%  Similarity=0.125  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLV  624 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~  624 (701)
                      .|..++..+ ..++...+...++.+...+|..    .+.-.++..+...|++++|...|+.++.....+.  ......|+
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344444444 3677777877888888777763    2334566777788888888888888887653332  23445567


Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      ..+...|++++|+..++......  .....+...+.+|...|++++|+..|+++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            78888888888888886643322  23356667788888888888888888765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00031  Score=63.99  Aligned_cols=97  Identities=22%  Similarity=0.221  Sum_probs=44.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695          489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR  564 (701)
Q Consensus       489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  564 (701)
                      +.+..+++-|.+.++.|.+   --+..|.+-|..++.+    .+.+.+|.-+|++|.++ .+|++.+.+..+.++...|+
T Consensus       147 ~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            3344445555555555543   1233344444443332    23345555555555443 34555555555555555555


Q ss_pred             HHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695          565 VEDLLKLLEKMLSKQKC-RTAYNQVI  589 (701)
Q Consensus       565 ~~~A~~~~~~~~~~~p~-~~~~~~l~  589 (701)
                      +++|..+++.++.++++ +.++..++
T Consensus       223 ~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            55555555555554443 33333333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.40  E-value=3.8e-05  Score=84.10  Aligned_cols=130  Identities=14%  Similarity=0.130  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------
Q 037695          441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT------  514 (701)
Q Consensus       441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~------  514 (701)
                      +.+...+..|+..+...+++++|..+.+...+. .+-....|-.+...+.+.++..++..+  .+... +..+.      
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve  103 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE  103 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence            345667889999999999999999999977775 232344444444577777877776666  33321 11111      


Q ss_pred             -------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          515 -------------VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       515 -------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                                   ..+..+..+|-+.|+.++|..+|+++++.. +-|+.+.+.++..|... ++++|.+++.+++
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence                         223334444444455555555555554443 33444444444444444 4555544444444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=5.3e-06  Score=76.81  Aligned_cols=105  Identities=16%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCH
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKS  668 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~  668 (701)
                      .-+.+.+++.+|+..|.++++..+. |++.|..-..+|.+.|.++.|++-.+.++.  +.|.. ..|..|+.+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence            3445566666666666666665533 555566666666666666666666666666  55544 6666666666666666


Q ss_pred             HHHHHHHHHHHHcCCCCCchHHHHhhhhh
Q 037695          669 EEADTLMLRFVERGHIQPKSEEHLQRQRV  697 (701)
Q Consensus       669 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  697 (701)
                      ++|++.|+++++..|..++-..+|+..+.
T Consensus       166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~  194 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNESYKSNLKIAEQ  194 (304)
T ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence            66666666666666666666666665443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=0.00025  Score=77.92  Aligned_cols=220  Identities=7%  Similarity=0.071  Sum_probs=147.2

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----
Q 037695          406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTP-VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV-----  479 (701)
Q Consensus       406 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----  479 (701)
                      +.+...+..|+..+...+++++|..+.+...+.  .|+. ..|-.+...+...++...+..+  .+... .+.+.     
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~v  102 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIV  102 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHH
Confidence            345667889999999999999999999977776  3443 3444444477788888877777  44443 22333     


Q ss_pred             --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695          480 --------------VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL  545 (701)
Q Consensus       480 --------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  545 (701)
                                    ..+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +.++|.+++.+.+..  
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--  178 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--  178 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence                          456667788889999999999999999876 55788899999999988 999999999887763  


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLV  624 (701)
Q Consensus       546 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  624 (701)
                                   +...+++..+.+++.++....|. ...+..+.......-               +..--..++.-+.
T Consensus       179 -------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~  230 (906)
T PRK14720        179 -------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR---------------EFTRLVGLLEDLY  230 (906)
T ss_pred             -------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh---------------ccchhHHHHHHHH
Confidence                         55566788888888888877765 222222222111110               1111222333344


Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037695          625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI  663 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  663 (701)
                      ..|.+.+++++++.+++.+++.... |......++.+|.
T Consensus       231 ~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        231 EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            4555556677777777777663333 3344555555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.32  E-value=0.00012  Score=72.52  Aligned_cols=179  Identities=17%  Similarity=0.072  Sum_probs=130.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChh-HHHHHH
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRT-AYNQVI  589 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~  589 (701)
                      .|+...+...+.+......-..+..++.+-.+   +--.....-..-.+...|++++|+..++.++...|+.. .+...+
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~  347 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAG  347 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34555555555544333332233333222222   11222333344456678999999999999999999854 555678


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSE  669 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  669 (701)
                      ..+.+.|+.++|.+.+++++...+. .......++.+|.+.|++.+|+.+++........ |+..|..++.+|...|+..
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         348 DILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchH
Confidence            8999999999999999999987543 3777889999999999999999999999885554 6789999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          670 EADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       670 ~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      +|...+-+..............+.+
T Consensus       426 ~a~~A~AE~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         426 EALLARAEGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999998887776655555555444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=8.4e-05  Score=71.72  Aligned_cols=288  Identities=13%  Similarity=0.013  Sum_probs=177.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          380 FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK  459 (701)
Q Consensus       380 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  459 (701)
                      .-..+.+...+..|+..+...++.. +.+..-|..-...+...+++++|..-.+.-++.. +-........-+++...++
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence            3455666666777777777666653 3334445555555555666666655444433321 1112233333444444444


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 037695          460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPDTVTYTTII-DALSKNGRVEEATELM  537 (701)
Q Consensus       460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li-~~~~~~g~~~~A~~~~  537 (701)
                      ..+|...++         +...+           ....|+..++....... +|.-.+|..+- .++...|++++|...-
T Consensus       133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence            444444443         00000           12223333333332221 24445555553 4566789999999888


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChh-------------HHHHHHHHHHhcCCHHHHHHH
Q 037695          538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRT-------------AYNQVIENLCSFGYLEEAGKI  604 (701)
Q Consensus       538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~g~~~~A~~~  604 (701)
                      ...++.. ..+......-..++.-.++.+.|...|++.+..+|+..             .+..=+.-..+.|++..|.+.
T Consensus       193 ~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~  271 (486)
T KOG0550|consen  193 IDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC  271 (486)
T ss_pred             HHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence            7777653 22333322223345567889999999999999988732             122234566788999999999


Q ss_pred             HHHHHHcCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          605 LGKVLRTAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       605 ~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      |.+++...+   .++...|........+.|+..+|+.--.++++  +.|.. ..+..-+.++.-.++|++|++.|+++.+
T Consensus       272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999987754   45556677777788899999999999998888  66553 6667777888889999999999999998


Q ss_pred             cCCCCCchHHHHh
Q 037695          681 RGHIQPKSEEHLQ  693 (701)
Q Consensus       681 ~~~~~~~~~~~l~  693 (701)
                      .... +.....|+
T Consensus       350 ~~~s-~e~r~~l~  361 (486)
T KOG0550|consen  350 LEKD-CEIRRTLR  361 (486)
T ss_pred             hccc-cchHHHHH
Confidence            7754 44444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=0.001  Score=60.71  Aligned_cols=254  Identities=15%  Similarity=0.107  Sum_probs=150.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695          382 NGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMD  461 (701)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  461 (701)
                      +-+.-.|.+..++..-.......  -+...-.-+-++|...|.+.....   +..... .|....+..+.......++.+
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~   89 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK   89 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence            34444577777766554443321  233333345566666666544332   222221 333344444444444444444


Q ss_pred             HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          462 GAK-KFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKM  540 (701)
Q Consensus       462 ~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  540 (701)
                      .-. .+.+.+.......+......-...|+..|++++|++......      +......=+..+.+..+++-|.+.+++|
T Consensus        90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333 334444444333333334444456788888888888877631      2222233344556777888888888888


Q ss_pred             HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          541 LSKGLVPTVVTYRTVIHRYCQ----VGRVEDLLKLLEKMLSK-QKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA  615 (701)
Q Consensus       541 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  615 (701)
                      .+-   .+..|.+.|..++.+    .+++.+|.-+|+++..+ .|++.+.+..+.++...|++++|..+++.++..... 
T Consensus       164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-  239 (299)
T KOG3081|consen  164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-  239 (299)
T ss_pred             Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence            863   256667767766654    45688888888888874 556777888888888888888888888888886644 


Q ss_pred             CHHHHHHHHHHHHhcCChhhHH-HHHHHHHhCCCCCCHh
Q 037695          616 DASTCHVLVESYLNKGIPLLAY-KVACRMFNRNLIPDLK  653 (701)
Q Consensus       616 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~  653 (701)
                      ++.+...++-.-...|...++. +.+.++..  ..|...
T Consensus       240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~  276 (299)
T KOG3081|consen  240 DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHP  276 (299)
T ss_pred             CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcch
Confidence            6777777777666667554433 44555555  444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=3.6e-05  Score=77.11  Aligned_cols=116  Identities=24%  Similarity=0.203  Sum_probs=52.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHH
Q 037695          521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLE  599 (701)
Q Consensus       521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  599 (701)
                      +..+...++++.|..+|+++.+..  |+.  ...++..+...++-.+|++++++.++..|. ...+...+..|.+.++++
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            333344455555555555555432  322  223444444444455555555555544443 333344444444445555


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 037695          600 EAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVAC  641 (701)
Q Consensus       600 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  641 (701)
                      .|..+.+++.+.. +.+..+|..|+.+|...|+++.|+..+.
T Consensus       252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            5555555444432 1133344444445555555544444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=0.0078  Score=62.31  Aligned_cols=373  Identities=14%  Similarity=0.094  Sum_probs=177.1

Q ss_pred             CCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHH
Q 037695          243 TPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEE  322 (701)
Q Consensus       243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~  322 (701)
                      .|.+..|..|.......-.++.|...|-+....   |.+.....|-....+.-+-             ..+..--|.+++
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~-------------aei~~~~g~fee  752 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQR-------------AEISAFYGEFEE  752 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHh-------------HhHhhhhcchhH
Confidence            466677777766666656666666655444321   1111111111111111100             111111256666


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          323 AKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP----NTVSYTAFLNGLCHNGKSLEAREMIN  398 (701)
Q Consensus       323 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~  398 (701)
                      |.+++-+|-...         ..|..+.+.|++-...++++.-   |-..    -...|+.+...++....++.|.+.+.
T Consensus       753 aek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  753 AEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             hhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665554431         2355566677776665555431   1111    13456677777777777777777765


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          399 TSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN  478 (701)
Q Consensus       399 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  478 (701)
                      .-...         ...+.++.+...+++...+.+.     ++.+....-.+.+++...|.-++|.+.|-+...    | 
T Consensus       821 ~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-  881 (1189)
T KOG2041|consen  821 YCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-  881 (1189)
T ss_pred             hccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-
Confidence            43221         1244555555555554443333     244555666677777777777777766543321    1 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--------------HHHHHHHhcCCHHHHHHHHHHHHhC-
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT--------------TIIDALSKNGRVEEATELMMKMLSK-  543 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--------------~li~~~~~~g~~~~A~~~~~~m~~~-  543 (701)
                          .+.+..|...++|.+|.++-+...    -|.+.|.-              -.|..+.+.|+.-+|.+++.+|.+. 
T Consensus       882 ----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e  953 (1189)
T KOG2041|consen  882 ----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE  953 (1189)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence                134556666777777777766552    23333321              1223344555555555666555542 


Q ss_pred             ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695          544 ---GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTC  620 (701)
Q Consensus       544 ---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  620 (701)
                         +.+|-..--..++.++. ..+.-++++-.++....+....+..     +...|-..++-++.+..-+   -.....|
T Consensus       954 ~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-----lles~~l~~~~ri~~n~Wr---gAEAyHF 1024 (1189)
T KOG2041|consen  954 QEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-----LLESGLLAEQSRILENTWR---GAEAYHF 1024 (1189)
T ss_pred             hhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-----hhhhhhhhhHHHHHHhhhh---hHHHHHH
Confidence               32221111111111111 1122222222222222221111111     1112222233333322211   1133445


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          621 HVLVESYLNKGIPLLAYKVACRMFN-RNLIPDLKLCKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       621 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                      ..|++-.+..|..+.|++..-.+.+ .++.|-..+|..++-+-+....+--.-+.|-++.
T Consensus      1025 milAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1025 MILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred             HHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            5566667777888888887766655 3566777788777665554444444444443333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.21  E-value=0.00012  Score=63.57  Aligned_cols=123  Identities=18%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHH
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPT---VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVI  589 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~  589 (701)
                      |..++..+ ..++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+....|++    .+...++
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            33334333 3666666766677766652 222   2233344566667777777777777777665442    2334566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRM  643 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  643 (701)
                      .++...|++++|+..++....  ....+..+...+..|...|++++|+..|+++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            667777777777777755322  2334455566677777777777777777654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.21  E-value=4e-05  Score=64.08  Aligned_cols=104  Identities=17%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHhhHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP--DLKLCKKVS  659 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~  659 (701)
                      ++..++..+.+.|++++|...+.++++..+.  .....+..++.++.+.|+++.|+..++.+.......  ...++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445555566666666666666666654321  113345556666777777777777777766632221  134556666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          660 ERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      .++.+.|++++|..+++++++..|.++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            6777777777777777777777654443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.20  E-value=0.00016  Score=61.32  Aligned_cols=93  Identities=12%  Similarity=-0.001  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK  630 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  630 (701)
                      .-.+...+...|++++|.++|+.+...+|. ..-|..|+.++-..|++++|+..|..+....+ .|+..+-.++.++...
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence            334444555666666666666666666665 44555666666666666666666666666553 3555566666666666


Q ss_pred             CChhhHHHHHHHHHh
Q 037695          631 GIPLLAYKVACRMFN  645 (701)
Q Consensus       631 g~~~~A~~~~~~~~~  645 (701)
                      |+.+.|.+.|+.++.
T Consensus       117 G~~~~A~~aF~~Ai~  131 (157)
T PRK15363        117 DNVCYAIKALKAVVR  131 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666666665555

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.15  E-value=0.00013  Score=61.78  Aligned_cols=98  Identities=9%  Similarity=-0.140  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI  663 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  663 (701)
                      ..-.++..+...|++++|..+|+-+....+. +..-|..|+-++-..|++.+|+..|.++...++. ++..+.+++.++.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L  114 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence            3445566666777777777777777665533 5666677777777777777777777777774332 3466666777777


Q ss_pred             hcCCHHHHHHHHHHHHHcCC
Q 037695          664 LEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       664 ~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ..|+.+.|.+.|+.++..-.
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHhc
Confidence            77777777777777776654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.13  E-value=0.00015  Score=76.28  Aligned_cols=141  Identities=13%  Similarity=0.005  Sum_probs=80.7

Q ss_pred             CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 037695          545 LVPTVVTYRTVIHRYCQ--V---GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF--------GYLEEAGKILGKVLR  610 (701)
Q Consensus       545 ~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~  610 (701)
                      .+.+...|...+++...  .   +....|..+|+++++..|+ ..++..++.++...        .++..+.+...++..
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            34555666655555332  1   2255666666666666666 44444444333221        123344444444333


Q ss_pred             cC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          611 TA-SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       611 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      .. ...++..+..++-.+...|++++|...+++++.  +.|+...|..++..+...|+.++|.+.|+++....|..|+
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            21 233455666666666666777777777777777  4456666777777777777777777777777777765553

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.11  E-value=0.012  Score=58.01  Aligned_cols=456  Identities=13%  Similarity=0.092  Sum_probs=212.5

Q ss_pred             HHHhcCCChHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 037695          113 AVLRSQADERVALQFFYWADRQWRYRHD----PIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVA--Y  186 (701)
Q Consensus       113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~  186 (701)
                      -+|+.+++...|-.+|..+-...-..|.    ...-+.++++|... +.+.....+..+.+..  | ...|-.+..+  +
T Consensus        14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~   89 (549)
T PF07079_consen   14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVA   89 (549)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence            3567788888888888876544321211    12345667777654 4555555555554432  2 2223333332  3


Q ss_pred             HHcCChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCChHH
Q 037695          187 SRAGKLRNAMYVLSMMQKA--AVAP------------NLLICNTAIHVLVVGNKLAKALRFLERMQLA----GITPNVLT  248 (701)
Q Consensus       187 ~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~  248 (701)
                      -+.+.+++|.+.+..-...  +..+            |...-+..+..+...|++.++..++++|...    .+..+..+
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~  169 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM  169 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence            3677888888777655432  2111            1222234445555666666666655555432    22355556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHchhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHH
Q 037695          249 YNCLIKGYCDLHRIKDAIKLIDEMPLK---GCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKE  325 (701)
Q Consensus       249 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~  325 (701)
                      |+.++-.+.+.        .|-++++.   .+-||   |.-++-.|.+.=+.                            
T Consensus       170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~----------------------------  210 (549)
T PF07079_consen  170 YDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHA----------------------------  210 (549)
T ss_pred             HHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHH----------------------------
Confidence            66554444332        22222111   11121   22222222221000                            


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          326 LVNQMSQMGCIPDVVTYTAVVNGFCRVG--ELDQAKKMLQQMYHHGCKPNTV-SYTAFLNGLCHNGKSLEAREMINTSEE  402 (701)
Q Consensus       326 ~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~  402 (701)
                       ++.-.=..+.|.......++....-..  +..--.+++....+.-+.|+.. ....|+..+.+  +.+++..+-+.+..
T Consensus       211 -~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~  287 (549)
T PF07079_consen  211 -FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS  287 (549)
T ss_pred             -HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH
Confidence             000000012334444444444333221  2222333333334444455432 22334444433  44444444443332


Q ss_pred             CCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHH-hcC---CHHHHHHHH
Q 037695          403 EWW----TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEI-------NLLIQSLC-REG---KMDGAKKFM  467 (701)
Q Consensus       403 ~~~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-------~~li~~~~-~~g---~~~~a~~~~  467 (701)
                      ..+    ..-..+|..++....+.++...|...+.-+.-.  .|+...-       ..+.+..+ .-.   +...-..+|
T Consensus       288 ~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw  365 (549)
T PF07079_consen  288 SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW  365 (549)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            211    112346777888888888888888877766554  2322211       11111222 111   112222333


Q ss_pred             HHHHHcCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHh---cCCHHHHHHH
Q 037695          468 QECLNKGCAVNVVNFTSLI---RGFCQKGD-LEEALSLLDDMYLCKKDPDTVTYTTI----IDALSK---NGRVEEATEL  536 (701)
Q Consensus       468 ~~~~~~~~~~~~~~~~~ll---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l----i~~~~~---~g~~~~A~~~  536 (701)
                      .......+. ......-|+   .-+-+.|. -++|+++++.+.+.. +-|...-|.+    =.+|.+   ...+..-..+
T Consensus       366 e~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL  443 (549)
T PF07079_consen  366 EEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKL  443 (549)
T ss_pred             HHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            333332111 111112222   22334444 778888888887632 2333332222    223322   2233444444


Q ss_pred             HHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          537 MMKMLSKGLVPT----VVTYRTVIHR--YCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       537 ~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      -+.+.+.|++|-    ...-+.|.++  +...|++.++.-.-.=..+..|++.++.-++-++....++++|..++..+  
T Consensus       444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L--  521 (549)
T PF07079_consen  444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL--  521 (549)
T ss_pred             HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC--
Confidence            445555676663    3334444433  34567777776555555555777777777777777777777777777764  


Q ss_pred             cCCCCCHHHHHHH
Q 037695          611 TASKADASTCHVL  623 (701)
Q Consensus       611 ~~~~~~~~~~~~l  623 (701)
                         +|+..++++=
T Consensus       522 ---P~n~~~~dsk  531 (549)
T PF07079_consen  522 ---PPNERMRDSK  531 (549)
T ss_pred             ---CCchhhHHHH
Confidence               5566555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.04  E-value=0.00026  Score=71.14  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695          482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ  561 (701)
Q Consensus       482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  561 (701)
                      ..+|+..+...++++.|+.+|+++.+..  |+.  ...+++.+...++-.+|++++++.++.. +-+...+...+..|.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3445556666778888888888887643  443  3446777777777788888888877653 4466666767777788


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      .++++.|+.+.+++....|+ ..+|..|+.+|...|+++.|+..+..+
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            88888888888888888887 668888888888888888888777765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0074  Score=58.79  Aligned_cols=155  Identities=15%  Similarity=0.105  Sum_probs=95.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HH
Q 037695          454 LCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI--RGFCQKGDLEEALSLLDDMYLCKKDPDTVT-------------YT  518 (701)
Q Consensus       454 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~  518 (701)
                      +.-.|++++|..+--..++..   ....+..++  .++...++.+.|...|++.+..  .|+...             +.
T Consensus       179 l~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  179 LAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             hhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence            345666666666655555542   111222222  2334456667777777666553  333222             11


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh
Q 037695          519 TIIDALSKNGRVEEATELMMKMLSK---GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS  594 (701)
Q Consensus       519 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~  594 (701)
                      .-..-..+.|++..|.+.|.+.+..   ++.|+...|.....+..+.|+..+|+.--+.+++.++. ..++..-+.++..
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~  333 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA  333 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            1122345678888888888887764   34455666776777777888888888888888777765 4555555666667


Q ss_pred             cCCHHHHHHHHHHHHHcCC
Q 037695          595 FGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       595 ~g~~~~A~~~~~~~~~~~~  613 (701)
                      .+++++|.+-++++.+...
T Consensus       334 le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  334 LEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            7888888888888877643

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.97  E-value=0.00018  Score=60.02  Aligned_cols=95  Identities=17%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLV  624 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~  624 (701)
                      ++..++..+.+.|++++|.+.|..+....|+    ..++..++.++.+.|++++|...++.++...+..  .+..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4445555666666666666666666665554    2345556666666666666666666666543221  234555666


Q ss_pred             HHHHhcCChhhHHHHHHHHHh
Q 037695          625 ESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .++...|++++|...+.++.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHH
Confidence            666666777777777766666

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.97  E-value=0.00014  Score=67.64  Aligned_cols=87  Identities=26%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695          524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG  602 (701)
Q Consensus       524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  602 (701)
                      +.+.+++.+|+..|.+.+... +-|++-|+.-..+|++.|.++.|++-.+.++..+|. ..+|..|+.+|...|++++|+
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            345566666666666666642 344555555666666666666666666666666665 556666666666666666666


Q ss_pred             HHHHHHHHc
Q 037695          603 KILGKVLRT  611 (701)
Q Consensus       603 ~~~~~~~~~  611 (701)
                      +.|+++++.
T Consensus       170 ~aykKaLel  178 (304)
T KOG0553|consen  170 EAYKKALEL  178 (304)
T ss_pred             HHHHhhhcc
Confidence            666666654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.95  E-value=0.00015  Score=73.28  Aligned_cols=97  Identities=10%  Similarity=-0.034  Sum_probs=84.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI  632 (701)
Q Consensus       554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  632 (701)
                      .....+...|++++|++.|++++...|. ...+..++.+|...|++++|+..++++++..+ .+...|..++.+|...|+
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence            3456677889999999999999999988 77888899999999999999999999998764 377888899999999999


Q ss_pred             hhhHHHHHHHHHhCCCCCCHh
Q 037695          633 PLLAYKVACRMFNRNLIPDLK  653 (701)
Q Consensus       633 ~~~A~~~~~~~~~~~~~p~~~  653 (701)
                      +++|+..++++++  +.|+..
T Consensus        86 ~~eA~~~~~~al~--l~P~~~  104 (356)
T PLN03088         86 YQTAKAALEKGAS--LAPGDS  104 (356)
T ss_pred             HHHHHHHHHHHHH--hCCCCH
Confidence            9999999999999  566543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.95  E-value=2.6e-05  Score=60.25  Aligned_cols=81  Identities=22%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 037695          595 FGYLEEAGKILGKVLRTASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEAD  672 (701)
Q Consensus       595 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  672 (701)
                      .|+++.|+.+++++++..+. ++...+..++.+|.+.|++++|+.++++ .+  ..|. ......++.++.+.|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            46777777777777776542 2445555577778888888888877776 33  2222 244445677788888888888


Q ss_pred             HHHHHH
Q 037695          673 TLMLRF  678 (701)
Q Consensus       673 ~~~~~~  678 (701)
                      +.|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            877653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.94  E-value=0.00024  Score=71.82  Aligned_cols=94  Identities=12%  Similarity=0.048  Sum_probs=83.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL  598 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  598 (701)
                      ....+...|++++|+.+|.+++... +.+...|..+..+|.+.|++++|+..+++++...|. ..++..++.+|...|++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            4556778899999999999999875 556888889999999999999999999999999987 77888999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 037695          599 EEAGKILGKVLRTASK  614 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~  614 (701)
                      ++|+..|+++++..+.
T Consensus        87 ~eA~~~~~~al~l~P~  102 (356)
T PLN03088         87 QTAKAALEKGASLAPG  102 (356)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999987643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.93  E-value=0.00017  Score=57.18  Aligned_cols=92  Identities=18%  Similarity=0.077  Sum_probs=41.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGK  667 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  667 (701)
                      ++..+...|++++|...++++++..+ .+...+..++..+...|++++|.+.+++..+.... +...+..++..+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence            34444444444555544444444321 12234444444445555555555555554442211 12344444555555555


Q ss_pred             HHHHHHHHHHHHHc
Q 037695          668 SEEADTLMLRFVER  681 (701)
Q Consensus       668 ~~~A~~~~~~~~~~  681 (701)
                      +++|..++.++.+.
T Consensus        84 ~~~a~~~~~~~~~~   97 (100)
T cd00189          84 YEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHcc
Confidence            55555555555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.91  E-value=0.0002  Score=56.77  Aligned_cols=94  Identities=20%  Similarity=0.198  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      ++..+...+...|++++|..+++++.+..|. ...+..++.++...|++++|...++.++...+. +..++..++..+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence            3566778888999999999999999988877 567888999999999999999999999887533 55788889999999


Q ss_pred             cCChhhHHHHHHHHHh
Q 037695          630 KGIPLLAYKVACRMFN  645 (701)
Q Consensus       630 ~g~~~~A~~~~~~~~~  645 (701)
                      .|+++.|...+.+..+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            9999999999998877

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.89  E-value=0.0047  Score=53.17  Aligned_cols=134  Identities=13%  Similarity=0.081  Sum_probs=99.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHH
Q 037695          510 KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYN  586 (701)
Q Consensus       510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~  586 (701)
                      ..|+...--.|..++...|++.+|...|++...--+..|......+.++....+++..|...+++..+.+|.   +...-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            457777777788888888888888888888776545567777778888888888888888888888877765   45566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          587 QVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+++.|...|++.+|...|+.++..-  |++..-......+.++|+..+|..-+..+.+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            67788888888888888888887754  4444444456677788877777665555544

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.84  E-value=2.1e-05  Score=48.89  Aligned_cols=33  Identities=45%  Similarity=0.860  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHchhCCCCCC
Q 037695          248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPD  280 (701)
Q Consensus       248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd  280 (701)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            567777777777777777777777777776665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.0012  Score=61.96  Aligned_cols=99  Identities=15%  Similarity=0.086  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695          546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF---GYLEEAGKILGKVLRTASKADASTCH  621 (701)
Q Consensus       546 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~  621 (701)
                      |-|...|..|...|...|+++.|..-|.++.+..|+ +..+..++.++...   ....++..+|++++...+ .|.....
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence            445555555555555555555555555555555444 44445555444422   224455555555555442 2444445


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHh
Q 037695          622 VLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       622 ~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .|+..+...|++.+|...++.|++
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHh
Confidence            555555555555555555555555

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.81  E-value=0.00039  Score=70.15  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=65.5

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695          406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKK--GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFT  483 (701)
Q Consensus       406 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  483 (701)
                      +.+......+++.+....+++.+..++......  ....-+.|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            344455555555555555555555555555443  111222333455666666666666666665555556666666666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695          484 SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK  526 (701)
Q Consensus       484 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~  526 (701)
                      .|++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            6666666666666666666555555444445555444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.79  E-value=0.00067  Score=60.85  Aligned_cols=113  Identities=12%  Similarity=-0.008  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLV  624 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  624 (701)
                      ...+..+...+...|++++|...|+++++..|+    ...+..++.++.+.|++++|...+.++++..+. +...+..++
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence            344666666777778888888888777765443    245667777777777777777777777775432 455666667


Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      .+|...|+...+...++.+..                     .+++|.++++++.+.+|
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCc
Confidence            777776665554433333222                     14566666666666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.78  E-value=0.001  Score=59.63  Aligned_cols=111  Identities=14%  Similarity=0.017  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 037695          514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIE  590 (701)
Q Consensus       514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~  590 (701)
                      ...+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++++...|. ...+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            44577788888999999999999999987542222  467888899999999999999999999999887 677788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       591 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ++...|+...+..-++.++.                     .+++|+++++++..
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~  148 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR  148 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence            99888887766655544432                     14667777777766

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.77  E-value=5.9e-05  Score=58.27  Aligned_cols=79  Identities=23%  Similarity=0.235  Sum_probs=40.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695          562 VGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       562 ~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  638 (701)
                      .|+++.|+.+++++.+..|.   ...+..++.+|.+.|++++|..++++ .+.+. .+......++.+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            35566666666666655552   22333456666666666666666655 22221 122333344556666666666666


Q ss_pred             HHHH
Q 037695          639 VACR  642 (701)
Q Consensus       639 ~~~~  642 (701)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.77  E-value=5e-05  Score=47.09  Aligned_cols=33  Identities=58%  Similarity=0.915  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPT  548 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  548 (701)
                      +|+.+|.+|++.|++++|.++|.+|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455555555555555555555555555555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.75  E-value=0.00013  Score=53.00  Aligned_cols=61  Identities=18%  Similarity=0.132  Sum_probs=43.0

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          623 LVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQ  685 (701)
Q Consensus       623 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  685 (701)
                      ++..+...|++++|+..++++++..  |+ ...+..++.++...|++++|..+|+++++..|..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4566777777777777777777743  43 4677777777777888888888888777777654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.73  E-value=5.5e-05  Score=46.54  Aligned_cols=32  Identities=31%  Similarity=0.559  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVP  547 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  547 (701)
                      +|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.73  E-value=6e-05  Score=46.36  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037695          480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP  512 (701)
Q Consensus       480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p  512 (701)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777888888888888888877777766

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.72  E-value=0.00017  Score=53.22  Aligned_cols=66  Identities=17%  Similarity=0.085  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 037695          616 DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEG-KSEEADTLMLRFVERGH  683 (701)
Q Consensus       616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~  683 (701)
                      ++.+|..++..+...|++++|+..|+++++  ..|+ ...+..++.++.+.| ++++|+..++++++..|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            455667777777777777777777777777  3443 366777777777777 57777777777776553

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0019  Score=60.66  Aligned_cols=125  Identities=13%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHH
Q 037695          566 EDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG---IPLLAYKVAC  641 (701)
Q Consensus       566 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~  641 (701)
                      +....-++.-+..+|+ ...|..|+..|...|+...|...|.++.+.. .+++..+..++.++..+.   ...++..+++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3344444555556666 6777777888888888888888887777765 336667767776644433   3446777777


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695          642 RMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL  692 (701)
Q Consensus       642 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  692 (701)
                      ++++.+.. |......++..+...|++.+|...++.|.+..+-..+-...+
T Consensus       218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i  267 (287)
T COG4235         218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI  267 (287)
T ss_pred             HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            77773333 456666777777778888888888888877776554444333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.69  E-value=0.0012  Score=63.07  Aligned_cols=95  Identities=12%  Similarity=0.004  Sum_probs=52.7

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-C-CHhhHHHHHHHHHhcCCH
Q 037695          593 CSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI-P-DLKLCKKVSERLILEGKS  668 (701)
Q Consensus       593 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~  668 (701)
                      .+.|++++|+..|+.+++..+...  +..+..++..|...|++++|+..|+++.+..+. | ....+..++.++...|++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence            334555555555555555433211  234445566666666666666666666652221 1 124555566666677777


Q ss_pred             HHHHHHHHHHHHcCCCCCc
Q 037695          669 EEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       669 ~~A~~~~~~~~~~~~~~~~  687 (701)
                      ++|..+|+++++..|.++.
T Consensus       234 ~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        234 AKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHHHHHHCcCCHH
Confidence            7777777777776665443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.67  E-value=0.001  Score=59.43  Aligned_cols=78  Identities=14%  Similarity=0.053  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVP--TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL  592 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~  592 (701)
                      .|..+...+...|++++|...|++.......|  ...++..+...+...|++++|+..+++++...|. ...+..++..+
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~  116 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC  116 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            34444455555566666666666555432111  1234555555556666666666666665555544 33344444444


Q ss_pred             H
Q 037695          593 C  593 (701)
Q Consensus       593 ~  593 (701)
                      .
T Consensus       117 ~  117 (168)
T CHL00033        117 H  117 (168)
T ss_pred             H
Confidence            4

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.67  E-value=0.0016  Score=63.39  Aligned_cols=129  Identities=12%  Similarity=0.086  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ-VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL  592 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~  592 (701)
                      .+|..++...-+.+..+.|..+|.+..+.+ ..+...|...+..-.+ .++.+.|.++|+.+++..|. ...|...+..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            356666666666666777777777776432 2334444444444233 45555577777777766555 55666666777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          593 CSFGYLEEAGKILGKVLRTASKAD---ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       593 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ...|+.+.|..+|++++.. ..++   ...|..++..=.+.|+.+...++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777777777776654 2222   23666666666666666666666666666

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.67  E-value=0.00062  Score=66.25  Aligned_cols=131  Identities=14%  Similarity=0.123  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK-NGRVEEATELMMKMLSKGLVPTVVTYRTVIHR  558 (701)
Q Consensus       480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  558 (701)
                      .+|..++....+.+..+.|..+|.+.++.+ ..+...|......-.. .++.+.|..+|+...+. ++.+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            578889999999999999999999998543 3344555555554333 57777799999999986 56778888888999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          559 YCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      +...|+.+.|..+|++++..-|..    ..|..++..=.+.|+++.+..+.+++.+.-
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999886664    488888888889999999999999988753

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.66  E-value=0.0012  Score=59.07  Aligned_cols=99  Identities=14%  Similarity=-0.010  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVS  659 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~  659 (701)
                      ..+..++..+...|++++|...+++++.....+  ...++..++..|...|++++|+..+++++.  +.|+. ..+..++
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la  113 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence            344555555556666666666666665543222  123566666666666666666666666665  33332 3344444


Q ss_pred             HHHH-------hcCCHH-------HHHHHHHHHHHcCC
Q 037695          660 ERLI-------LEGKSE-------EADTLMLRFVERGH  683 (701)
Q Consensus       660 ~~~~-------~~g~~~-------~A~~~~~~~~~~~~  683 (701)
                      ..+.       ..|+++       +|..+++++....|
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p  151 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP  151 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            4444       666666       44555555555554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.64  E-value=0.00032  Score=51.76  Aligned_cols=63  Identities=22%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG-YLEEAGKILGKVLRT  611 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  611 (701)
                      +.+|..+...+...|++++|+..|+++++.+|+ ..++..++.++...| ++++|+..++++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            344555555555555555555555555555554 445555555555555 455555555555443

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.64  E-value=0.072  Score=51.77  Aligned_cols=283  Identities=16%  Similarity=0.137  Sum_probs=176.3

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHH
Q 037695          387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGL--RREGKLSEACDVVREMVKKGFFPTPV--EINLLIQSLCREGKMDG  462 (701)
Q Consensus       387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~  462 (701)
                      .|+-..|.++-.+..+. +..|......++.+-  .-.|+++.|.+-|+.|...   |...  .+..|.-.--+.|+.+.
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence            45666666665554421 233444444444433  3467888888888887653   1111  12223223346788888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHH
Q 037695          463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPDTVT--YTTIIDALS---KNGRVEEATEL  536 (701)
Q Consensus       463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~--~~~li~~~~---~~g~~~~A~~~  536 (701)
                      |.++-+..-.. -+.-...+.+.+...|..|+++.|+++.+.-.... +.++..-  -..|+.+-.   -..+...|...
T Consensus       173 Ar~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            88877776554 23345567778888888999999999888765432 3444322  222332211   12345556665


Q ss_pred             HHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCC
Q 037695          537 MMKMLSKGLVPTVVT-YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAG-KILGKVLRTASK  614 (701)
Q Consensus       537 ~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~  614 (701)
                      -.+..+  +.||..- -..-..++.+.|+..++-.+++.+.+..|.+.++..+  .+.+.|+..... +-.+++.... +
T Consensus       252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk-~  326 (531)
T COG3898         252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDTALDRLKRAKKLESLK-P  326 (531)
T ss_pred             HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcC-c
Confidence            555544  4555332 2334578899999999999999999988876655332  334555533221 1122222222 3


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 037695          615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE-GKSEEADTLMLRFVER  681 (701)
Q Consensus       615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~  681 (701)
                      .+......+..+-+..|++..|..-.+.+.+  ..|...+|..++++-... |+-.++..++-+.++.
T Consensus       327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            3556666778888999999999999888887  788888999888877655 9999999999888764

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.63  E-value=0.00075  Score=65.16  Aligned_cols=131  Identities=16%  Similarity=0.141  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSK---QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRT----AS-KADAS  618 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~  618 (701)
                      .|..|.+.|.-.|+++.|+..-+.-+..   ..+    ..++..++.++.-.|+++.|.+.|+..+..    +- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4566666777788899888776543322   222    457788888888899999999888876433    22 23345


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          619 TCHVLVESYLNKGIPLLAYKVACRMFNR-----NLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      .+.+|+.+|.-..+++.|+.++.+-+..     +..-....+..++.++...|..++|..+.+..++.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            6778888888888889998887765441     12223467778888888889989988887766554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.61  E-value=0.0047  Score=58.51  Aligned_cols=166  Identities=9%  Similarity=0.047  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--hHHHH
Q 037695          513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY---RTVIHRYCQVGRVEDLLKLLEKMLSKQKCR--TAYNQ  587 (701)
Q Consensus       513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~  587 (701)
                      +...+-.....+...|++++|...|+.+.... |-+....   ..++.++.+.+++++|...+++.++.+|+.  ..+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            33333344555677899999999999998863 2223332   456788899999999999999999998882  22223


Q ss_pred             HHHHHH--hcC---------------C---HHHHHHHHHHHHHcCCCCCHH--H-------HH-------HHHHHHHhcC
Q 037695          588 VIENLC--SFG---------------Y---LEEAGKILGKVLRTASKADAS--T-------CH-------VLVESYLNKG  631 (701)
Q Consensus       588 l~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~~~~~--~-------~~-------~l~~~~~~~g  631 (701)
                      ...+++  ..+               +   ..+|...|+.+++.-|...-.  .       -+       ..+..|.+.|
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~  189 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG  189 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333322  111               1   356778888888864332211  1       01       1245678888


Q ss_pred             ChhhHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          632 IPLLAYKVACRMFNRNLI--PDLKLCKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       632 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                      .+..|+.-++.++++-+.  ........+..+|...|..++|..+...+.
T Consensus       190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            888888888888883322  123677788888888888888888776543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.60  E-value=0.0093  Score=63.12  Aligned_cols=67  Identities=9%  Similarity=0.034  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                      .++..|..+.-.....|++++|...+++++..+|+...|..++..+...|+.++|...+.++.+..+
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3445565555555556777777777777777666666666667777777777777777777666543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.60  E-value=0.019  Score=49.55  Aligned_cols=134  Identities=13%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH
Q 037695          545 LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---CRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTC  620 (701)
Q Consensus       545 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~  620 (701)
                      +.|+...-..|..+....|+..+|...|++... ++   +....-.+..+....++...|...++++.+.++ ..++.+.
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            467777778899999999999999999999886 33   356777888999999999999999999988764 1123334


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          621 HVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       621 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      -.+...|...|.+..|...|+.+..  .-|+...-...+..+.+.|+.++|..-+..+.+.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            4678899999999999999999999  5666666666777899999999888777666554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.60  E-value=0.13  Score=53.73  Aligned_cols=121  Identities=8%  Similarity=0.030  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHH----------HHHHcCChhHHHHHHHHHHHCCC
Q 037695          138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMV----------AYSRAGKLRNAMYVLSMMQKAAV  207 (701)
Q Consensus       138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----------~~~~~g~~~~A~~~~~~~~~~~~  207 (701)
                      .|.+..|..+.......-.++.|...|-....   -+.+.....|-.          .-+-.|.+++|.++|-.|.+.. 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence            46677888887776666666666666644332   111111111111          1112467777777777665432 


Q ss_pred             CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 037695          208 APNLLICNTAIHVLVVGNKLAKALRFLERMQLAGI--TPNVLTYNCLIKGYCDLHRIKDAIKLIDE  271 (701)
Q Consensus       208 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~  271 (701)
                              ..+..+.+.|++-...++++.-- .+.  ..-...|+.+...++....+++|.+.+..
T Consensus       765 --------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  765 --------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             --------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    23444555566555554443211 000  00123566666666666666666666554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.58  E-value=0.0022  Score=62.72  Aligned_cols=165  Identities=18%  Similarity=0.148  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK---DPD--TVTYTTIIDALSKNGRVEEATELMMKMLSK----GLVPT-  548 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-  548 (701)
                      ...|......|...+++++|.+.|.+......   .+.  ...|.....+|.+. ++++|+..+++....    | .|+ 
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~  112 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHH
Confidence            34466666777777778877777776643211   111  12344444444443 777777777766542    3 222 


Q ss_pred             -HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcC---CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---
Q 037695          549 -VVTYRTVIHRYCQV-GRVEDLLKLLEKMLSKQ---KC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD---  616 (701)
Q Consensus       549 -~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---  616 (701)
                       ...+..+...|... |++++|++.|+++....   ..    ...+..++..+.+.|++++|..+|+++.......+   
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence             33455566666666 67777777777665541   11    23445566667777777777777777665432111   


Q ss_pred             --HH-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          617 --AS-TCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       617 --~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                        .. .+...+-+++..|++..|...+++...
T Consensus       193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              11 122233355566677777777776665

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.57  E-value=0.0013  Score=66.40  Aligned_cols=123  Identities=17%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 037695          335 CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH--GCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITY  412 (701)
Q Consensus       335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  412 (701)
                      .+.+......+++.+....+++.+..++.+....  ....-..|..++++.|...|..+.+..++..=..-|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3456666777777777778888888888887764  22223345568888888888888888888888888888888888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          413 SVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       413 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  457 (701)
                      +.||+.+.+.|++..|.++...|...+...++.|+...+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            888888888888888888888888877777777777777666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.55  E-value=0.11  Score=51.66  Aligned_cols=196  Identities=15%  Similarity=0.129  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHHhCCCCC
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT-------TIIDALS----KNGRVEEATELMMKMLSKGLVP  547 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~----~~g~~~~A~~~~~~m~~~~~~p  547 (701)
                      +.++..++....+.++...|...+.-+.-  ..|+...-.       .+-+..+    ..-+..+-+.+|+.....++..
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr  375 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR  375 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            45677777788888888888887776654  344433211       1122222    1112334455666665543221


Q ss_pred             C--HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC-hhHHHHH----HHHHH---hcCCHHHHHHHHHHHHHcCCCCC
Q 037695          548 T--VVTYRTVIHRYCQVGR-VEDLLKLLEKMLSKQKC-RTAYNQV----IENLC---SFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       548 ~--~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l----~~~~~---~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      -  ......-+.-+.+.|. -++|+.+++.+++-.+. ...-+.+    =..|.   +...+..-..+-+-+-+.|.+|-
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence            1  1112222344666676 78899999998877554 2222211    12222   12334444444444555565543


Q ss_pred             ----HHHHHHHHH--HHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          617 ----ASTCHVLVE--SYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       617 ----~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                          ...-|-|..  -+..+|++.++.-+...+.+  +.|++.+|..++-++....++++|.+++.++
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence                233444544  36789999999999888888  9999999999999999999999999999654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.55  E-value=0.0012  Score=51.81  Aligned_cols=68  Identities=15%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             CChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHhHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 037695          190 GKLRNAMYVLSMMQKAAV-APNLLICNTAIHVLVVGN--------KLAKALRFLERMQLAGITPNVLTYNCLIKGYC  257 (701)
Q Consensus       190 g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  257 (701)
                      +++.....+|+.+++.|+ -|++.+|+.++.+.++..        ++-..+.+|+.|...+++|+..+|+.++..+.
T Consensus        39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll  115 (120)
T PF08579_consen   39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL  115 (120)
T ss_pred             cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            444444444444444444 444444444444443321        12233445555555555555555555554443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.54  E-value=0.0023  Score=62.64  Aligned_cols=198  Identities=14%  Similarity=0.116  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--
Q 037695          445 VEINLLIQSLCREGKMDGAKKFMQECLNK----GCAVN-VVNFTSLIRGFCQKGDLEEALSLLDDMYL----CKKDPD--  513 (701)
Q Consensus       445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~p~--  513 (701)
                      ..|......|-..+++++|...|.+....    +-+.. ...|.....+|.+. ++++|+..+++...    .| .|+  
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a  113 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence            35777777788888999999888877543    11111 22344444555444 88899988887653    33 333  


Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----h
Q 037695          514 TVTYTTIIDALSKN-GRVEEATELMMKMLSK----GLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----R  582 (701)
Q Consensus       514 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~  582 (701)
                      ...+..+...|... |++++|++.|++..+.    + .+.  ..++..++..+.+.|++++|.++|+++......    .
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence            23567777788787 8999999999887763    2 111  334667778888999999999999988765322    1


Q ss_pred             ----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC--HHHHHHHHHHHHhcC--ChhhHHHHHHHHHh
Q 037695          583 ----TAYNQVIENLCSFGYLEEAGKILGKVLRTAS--KAD--ASTCHVLVESYLNKG--IPLLAYKVACRMFN  645 (701)
Q Consensus       583 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~  645 (701)
                          ..+...+-++...|++..|...+++.....+  ..+  ......|+.++-...  .++.|+.-|..+.+
T Consensus       193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence                1223334455567899999999998876543  212  234455565554332  34445555544433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.54  E-value=0.0015  Score=51.35  Aligned_cols=75  Identities=17%  Similarity=0.309  Sum_probs=41.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037695          451 IQSLCREGKMDGAKKFMQECLNKGC-AVNVVNFTSLIRGFCQKG--------DLEEALSLLDDMYLCKKDPDTVTYTTII  521 (701)
Q Consensus       451 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~li  521 (701)
                      |..|...+++.....+|+.+++.|+ -|++.+|+.++.+.++..        ++-..+.+|+.|...+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3344444566666666666666665 556666666655554432        2334455566666555666666666666


Q ss_pred             HHHH
Q 037695          522 DALS  525 (701)
Q Consensus       522 ~~~~  525 (701)
                      ..+.
T Consensus       112 ~~Ll  115 (120)
T PF08579_consen  112 GSLL  115 (120)
T ss_pred             HHHH
Confidence            5544

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.46  E-value=0.0038  Score=59.56  Aligned_cols=94  Identities=16%  Similarity=0.109  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVE  625 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~  625 (701)
                      |...+..+.+.|++++|+..|+.+++.+|+.    .++..++..|...|++++|...|+.+++..+.  ..+..+..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            3333333344566666666666666666652    35556666666666666666666666654321  12334444555


Q ss_pred             HHHhcCChhhHHHHHHHHHh
Q 037695          626 SYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       626 ~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+...|+++.|..+|+++.+
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666666

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.46  E-value=0.00079  Score=48.87  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=26.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          557 HRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      ..+.+.|++++|...|++++...|. ..++..++.++...|++++|...|+++++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444455555555555555555444 34444455555555555555555554444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.44  E-value=0.0046  Score=57.04  Aligned_cols=62  Identities=16%  Similarity=0.147  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC  581 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  581 (701)
                      ....+...|++.+|...|+.+....  -+--......++.++.+.|+++.|...+++.+...|.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            3445567777888888887777642  1112444556667777778888888888777777776

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.44  E-value=0.0044  Score=50.83  Aligned_cols=55  Identities=25%  Similarity=0.321  Sum_probs=27.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      ..++-..|+.++|+.+|++.+..+++    ...+-.++..|...|++++|..++++.+.
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444555555555555555554332    22344445555555555555555555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.44  E-value=0.043  Score=52.04  Aligned_cols=55  Identities=18%  Similarity=0.206  Sum_probs=38.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      .+...|.+.|.+..|..-++.+++..|.    ..+...++.+|...|..++|..+...+
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4556677777777777777777777766    345566677777777777777666544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.42  E-value=0.16  Score=50.42  Aligned_cols=146  Identities=17%  Similarity=0.233  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 037695          444 PVEINLLIQSLCREGKMDGAKKFMQECLNKG-CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTY-TTII  521 (701)
Q Consensus       444 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li  521 (701)
                      ..+|...+....+..-++.|..+|-++.+.+ ..+++..+++++.-++. |+..-|.++|+--...  -||...| +..+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3456666777777777888888888888877 56677788888876664 6777888888765542  3444333 3445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037695          522 DALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLC  593 (701)
Q Consensus       522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~  593 (701)
                      .-+...++-..|..+|+..+.. +..+  ...|..++.--..-|+...+..+=+++....|...+.......|.
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~  546 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence            5566778888888888865543 2222  556788888778888888888888888777776544444444443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.42  E-value=0.00014  Score=43.48  Aligned_cols=29  Identities=45%  Similarity=0.964  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHchhCC
Q 037695          248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKG  276 (701)
Q Consensus       248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  276 (701)
                      +|+.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.40  E-value=0.17  Score=50.29  Aligned_cols=453  Identities=12%  Similarity=0.086  Sum_probs=223.9

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 037695          161 KRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLA  240 (701)
Q Consensus       161 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~  240 (701)
                      .++-+.++. + |.|+.+|-.|+..+...|..++..+++++|..-- +--..+|..-+..-....++.....+|.+-...
T Consensus        29 lrLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          29 LRLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             HHHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            344444443 2 4588899999999999999999999999987432 334457777777777778899999999888765


Q ss_pred             CCCCChHHHHHHHHHHHhcCChh------HHHHHHHHch-hCCCCCCH-HHHHHHH---HHHHHcCCh------hHHHHH
Q 037695          241 GITPNVLTYNCLIKGYCDLHRIK------DAIKLIDEMP-LKGCSPDK-VSYYTVM---GYLCKEKRI------KEVRDL  303 (701)
Q Consensus       241 g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~-~~g~~pd~-~~~~~ll---~~~~~~g~~------~~a~~~  303 (701)
                        ..+...|..-+..-.+.+..-      ...+.|+-.. ..++.|-. ..|+..+   ...-..|.+      +..+..
T Consensus       106 --~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~  183 (660)
T COG5107         106 --SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG  183 (660)
T ss_pred             --hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence              345666666665444433211      1122232222 23445432 2233332   222223333      334444


Q ss_pred             HHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCC----CCHHHH
Q 037695          304 MEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH--HGCK----PNTVSY  377 (701)
Q Consensus       304 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~~~  377 (701)
                      +.+++.     ...|++++-..-++.....   .+..|-...+.  -...-+-.|.+.++++..  .|..    .+..++
T Consensus       184 Y~ral~-----tP~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~  253 (660)
T COG5107         184 YMRALQ-----TPMGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTA  253 (660)
T ss_pred             HHHHHc-----CccccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhhh
Confidence            444433     1123333333333322211   11111111100  001123445555555543  2321    122222


Q ss_pred             HHH-----------HHHHHhc-----CC-HHH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          378 TAF-----------LNGLCHN-----GK-SLE-AREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKG  439 (701)
Q Consensus       378 ~~l-----------i~~~~~~-----g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~  439 (701)
                      +..           |.--...     |+ ..+ ..-++++... .+.-....|-.--.-+...++-+.|+.....-.   
T Consensus       254 nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~-y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~---  329 (660)
T COG5107         254 NKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILD-YFYYAEEVWFDYSEYLIGISDKQKALKTVERGI---  329 (660)
T ss_pred             ccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc---
Confidence            221           1110000     00 000 0001111111 011122222222233344455555555443322   


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCC
Q 037695          440 FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ---------KGDLEEALSLLDDMYLCKK  510 (701)
Q Consensus       440 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~  510 (701)
                       +-.+.....+...|....+-+.+...|+.+...           |.+-|.+         .|+++.-.+++-.-    .
T Consensus       330 -~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr----~  393 (660)
T COG5107         330 -EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKR----I  393 (660)
T ss_pred             -cCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHH----H
Confidence             222211111222223333333333333333221           1111110         12221111111111    1


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHH-HHH
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAY-NQV  588 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l  588 (701)
                      ..-...|...+..-.+..-.+.|..+|-++.+.| +.++..++++++.-++ .|+..-|..+|+.-+...|+...| ...
T Consensus       394 ~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~ky  472 (660)
T COG5107         394 NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKY  472 (660)
T ss_pred             hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHH
Confidence            1223456667776677777888888888888877 5567777888777665 577788888888888777775544 456


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          589 IENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       589 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      +..+...++-+.|..+|+..+..- ..+  ..+|..++.--..-|+...+..+-+++..  ..|-.
T Consensus       473 l~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe  535 (660)
T COG5107         473 LLFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE  535 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence            777778888888888888655431 112  45677777777777888777777777776  44443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.38  E-value=0.0083  Score=49.24  Aligned_cols=91  Identities=25%  Similarity=0.225  Sum_probs=65.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---h-hHHHHHHHHHH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---R-TAYNQVIENLC  593 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~-~~~~~l~~~~~  593 (701)
                      +..++-..|+.++|+.+|++....|....  ...+..+...+...|++++|..++++.....|+   . .....+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34566778888888888888888775544  345666777888888888888888888877665   2 22334456677


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 037695          594 SFGYLEEAGKILGKVLR  610 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~  610 (701)
                      ..|+.++|+..+-..+.
T Consensus        87 ~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            78888888888776654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.36  E-value=0.00024  Score=42.48  Aligned_cols=28  Identities=43%  Similarity=0.850  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695          481 NFTSLIRGFCQKGDLEEALSLLDDMYLC  508 (701)
Q Consensus       481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~  508 (701)
                      +|++++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444555555555555555555554443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.33  E-value=0.0088  Score=53.47  Aligned_cols=105  Identities=17%  Similarity=0.262  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHH
Q 037695          174 CRPEAFSYLMVAYSRA-----GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLT  248 (701)
Q Consensus       174 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  248 (701)
                      .+-.+|..++..|.+.     |.++=....+..|.+.|+..|..+|+.||..+=+. .+               .|... 
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~f---------------vp~n~-  107 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KF---------------VPRNF-  107 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Cc---------------ccccH-
Confidence            4666666666666533     44555555566666666666666666666655431 11               11111 


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695          249 YNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI  297 (701)
Q Consensus       249 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~  297 (701)
                      +.++.--  .-.+.+-|++++++|...|+-||..++..++..+.+.+..
T Consensus       108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence            1111111  1234467889999999999999999999999888776543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.28  E-value=0.0057  Score=54.66  Aligned_cols=104  Identities=19%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             CCChHHHHHHHHHHHh-----cCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 037695          243 TPNVLTYNCLIKGYCD-----LHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ  317 (701)
Q Consensus       243 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  317 (701)
                      ..+-.+|..+++.|.+     .|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+     .....
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----F~hyp  116 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----FMHYP  116 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----hccCc
Confidence            4567777777777764     46677777778888888888888888888877654 2211 11111111     00111


Q ss_pred             CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 037695          318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVG  353 (701)
Q Consensus       318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  353 (701)
                      .+-+-|++++++|...|+-||..++..|++.+++.+
T Consensus       117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            233445555555555555555555555555554443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.25  E-value=0.033  Score=57.43  Aligned_cols=126  Identities=13%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHccCCHhHHHHHH---------HHHHhCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHchhCCCCCCH
Q 037695          213 ICNTAIHVLVVGNKLAKALRFL---------ERMQLAGITPNVLTYNCLIKGYCDLHRIK--DAIKLIDEMPLKGCSPDK  281 (701)
Q Consensus       213 ~~~~ll~~~~~~g~~~~A~~~~---------~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~  281 (701)
                      .+.+-+..|...|.+++|.++-         +.+...  ..+...++..=++|.+..+..  +.+.-++++++.|-.|+.
T Consensus       558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~  635 (1081)
T KOG1538|consen  558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND  635 (1081)
T ss_pred             cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence            3444445566667666665431         111110  112233444456666655543  444556777888877887


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          282 VSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKM  361 (701)
Q Consensus       282 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  361 (701)
                      ..   +...++-.|++.+|.++|.+-          |.-..|+++|..|+--          -+..-+...|..++-..+
T Consensus       636 iL---lA~~~Ay~gKF~EAAklFk~~----------G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL  692 (1081)
T KOG1538|consen  636 LL---LADVFAYQGKFHEAAKLFKRS----------GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKML  692 (1081)
T ss_pred             HH---HHHHHHhhhhHHHHHHHHHHc----------CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHH
Confidence            54   345567788999999988765          6667788887776631          234445556665554444


Q ss_pred             HH
Q 037695          362 LQ  363 (701)
Q Consensus       362 ~~  363 (701)
                      .+
T Consensus       693 ~R  694 (1081)
T KOG1538|consen  693 IR  694 (1081)
T ss_pred             HH
Confidence            43

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.22  E-value=0.0015  Score=47.96  Aligned_cols=49  Identities=24%  Similarity=0.361  Sum_probs=22.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      .|++++|+++|+++....|. ..++..++.+|.+.|++++|..+++++..
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44445555555554444443 33444444444444555555444444444

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.21  E-value=0.033  Score=58.57  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=105.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCChhHHH-H
Q 037695          519 TIIDALSKNGRVEEATELMMKMLSKGLVPTVV------TYRTVIHRYC----QVGRVEDLLKLLEKMLSKQKCRTAYN-Q  587 (701)
Q Consensus       519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~-~  587 (701)
                      .++....-.|+-+.+++.+.+..+.+-.-.+.      .|..++..++    .....+.|.++++.+.++.|+...|. .
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~  272 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF  272 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            34444445556666666555554432111111      1222222222    34578889999999999999865554 4


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH-HHHHH
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV-SERLI  663 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~  663 (701)
                      -++.+...|++++|++.|+++.....   ......+.-+++.+...+++++|...+.++.+.+-- +..+|..+ +.++.
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~  351 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLL  351 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence            46777788999999999998764221   233456677888999999999999999999983221 23444433 44566


Q ss_pred             hcCCH-------HHHHHHHHHHHHc
Q 037695          664 LEGKS-------EEADTLMLRFVER  681 (701)
Q Consensus       664 ~~g~~-------~~A~~~~~~~~~~  681 (701)
                      ..|+.       ++|.+++.++...
T Consensus       352 ~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  352 MLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhccchhhhhhHHHHHHHHHHHHHH
Confidence            78888       8999999888544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.19  E-value=0.0016  Score=47.73  Aligned_cols=60  Identities=25%  Similarity=0.372  Sum_probs=43.1

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHH
Q 037695          525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAY  585 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  585 (701)
                      ...|++++|+.+|+++.... |-+...+..++.+|.+.|++++|.++++++....|+.+.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~   61 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY   61 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence            45677888888888877753 4467777777888888888888888888888777774333

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.18  E-value=0.087  Score=48.60  Aligned_cols=79  Identities=13%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhc
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSF  595 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~  595 (701)
                      ++.-|-.+....+|...+..+.+.    =...-..++..|.+.|.+..|..-++.+++..|+    ..+...++.+|.+.
T Consensus       116 li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l  191 (203)
T PF13525_consen  116 LIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL  191 (203)
T ss_dssp             HHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            333344444455555544444331    0111223566777788888888888888877776    23556667777777


Q ss_pred             CCHHHHH
Q 037695          596 GYLEEAG  602 (701)
Q Consensus       596 g~~~~A~  602 (701)
                      |..+.|.
T Consensus       192 ~~~~~a~  198 (203)
T PF13525_consen  192 GLKQAAD  198 (203)
T ss_dssp             T-HHHHH
T ss_pred             CChHHHH
Confidence            7766443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.14  E-value=0.0016  Score=48.51  Aligned_cols=61  Identities=25%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      ..|...+++++|++++++++..++. +...+...+.++.+.|++.+|...++++.+..|..+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            4566667777777777777663222 335566666677777777777777777776665433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.012  Score=54.85  Aligned_cols=99  Identities=17%  Similarity=0.087  Sum_probs=64.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC-HhhHHHHHHHHHhcCC
Q 037695          592 LCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNL-IPD-LKLCKKVSERLILEGK  667 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~  667 (701)
                      +.+.|++..|...|...++..+.  ..+..+.-|+.++...|++++|..+|..+.+... .|. ++.+-+++.+..+.|+
T Consensus       151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~  230 (262)
T COG1729         151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN  230 (262)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence            33445555555555555554321  1122333367777777777777777777776322 222 3788889999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCchHH
Q 037695          668 SEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       668 ~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                      .++|..+|.++.+++|..+....
T Consensus       231 ~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         231 TDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHH
Confidence            99999999999999987766543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.11  E-value=0.032  Score=47.91  Aligned_cols=88  Identities=7%  Similarity=-0.063  Sum_probs=58.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 037695          557 HRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL  635 (701)
Q Consensus       557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  635 (701)
                      .-+...|++++|..+|+-+...+|. ..-+..|+.++-..+++++|+..|..+..... -|+......+.+|...|+.+.
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence            3345677777777777777666655 44556666666677777777777776655543 244445566777777777777


Q ss_pred             HHHHHHHHHh
Q 037695          636 AYKVACRMFN  645 (701)
Q Consensus       636 A~~~~~~~~~  645 (701)
                      |...|+....
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            7777776666

>PRK15331 chaperone protein SicA; Provisional

Probab=97.10  E-value=0.0091  Score=51.14  Aligned_cols=94  Identities=14%  Similarity=-0.038  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL  664 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  664 (701)
                      .-..+.-+...|++++|..+|.-+...++- ++.-|..|+.++-..|++++|+..|..+...+.. |+..+-+.+.+|..
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~  117 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHH
Confidence            334556667899999999999998876643 6777889999999999999999999988775443 44456678899999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 037695          665 EGKSEEADTLMLRFVE  680 (701)
Q Consensus       665 ~g~~~~A~~~~~~~~~  680 (701)
                      .|+.+.|...|+.+++
T Consensus       118 l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        118 MRKAAKARQCFELVNE  133 (165)
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            9999999999999998

>PRK11906 transcriptional regulator; Provisional

Probab=97.06  E-value=0.017  Score=58.12  Aligned_cols=149  Identities=10%  Similarity=-0.018  Sum_probs=112.5

Q ss_pred             CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC
Q 037695          529 RVEEATELMMKMLSK-GLVPT-VVTYRTVIHRYCQ---------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG  596 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  596 (701)
                      ..+.|..+|.+.... .+.|+ ...|..+..++..         .....+|.++.+++++.+|. +.+...++.++.-.|
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            356788899999832 34554 5566666555432         23456788899999999887 778888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHHHHHH
Q 037695          597 YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL---KLCKKVSERLILEGKSEEADT  673 (701)
Q Consensus       597 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~  673 (701)
                      +++.|...|+++...++. ...+|...++...-.|+.++|.+.++++++  +.|..   .+...+++.|+..+ .++|+.
T Consensus       353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~  428 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIK  428 (458)
T ss_pred             chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence            999999999999987643 677888888899999999999999999999  56653   45555556777555 688888


Q ss_pred             HHHHHHHc
Q 037695          674 LMLRFVER  681 (701)
Q Consensus       674 ~~~~~~~~  681 (701)
                      +|-+-.+.
T Consensus       429 ~~~~~~~~  436 (458)
T PRK11906        429 LYYKETES  436 (458)
T ss_pred             HHhhcccc
Confidence            88655443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.01  Score=58.18  Aligned_cols=98  Identities=13%  Similarity=-0.004  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSER  661 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~  661 (701)
                      ..+..++.+|.+.+++.+|+....++++.+ +.|...+..-+.+|...|+++.|+..|+++++  +.|+. .+-..++.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence            467788889999999999999999999887 45888888889999999999999999999999  77765 555555554


Q ss_pred             HHhcCCHHH-HHHHHHHHHHcCC
Q 037695          662 LILEGKSEE-ADTLMLRFVERGH  683 (701)
Q Consensus       662 ~~~~g~~~~-A~~~~~~~~~~~~  683 (701)
                      -.+...+++ ..++|.+|...-.
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccc
Confidence            444444443 4778888876544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.00  E-value=0.32  Score=45.88  Aligned_cols=201  Identities=25%  Similarity=0.188  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 037695          480 VNFTSLIRGFCQKGDLEEALSLLDDMYLC-KKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH-  557 (701)
Q Consensus       480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-  557 (701)
                      ..+......+...+.+..+...+...... ........+..+...+...+++..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            34444444455555555555555544321 112233344444444445555555555555555432111 111111122 


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      .+...|+++.|...+.++....|.    ...+......+...++.+.|...+.++...........+..+...+...+.+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            455555555555555555443331    2222233333445556666666666555543221344455555555566666


Q ss_pred             hhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          634 LLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       634 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ..|...+.....  ..|+ ...+..+...+...+..+++...+.+..+..+
T Consensus       219 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         219 EEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            666666665555  3332 23333344444445556666666665555443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.067  Score=49.04  Aligned_cols=165  Identities=19%  Similarity=0.166  Sum_probs=116.1

Q ss_pred             HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 037695          113 AVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKL  192 (701)
Q Consensus       113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  192 (701)
                      +.+..+..++..++.++  .+.      ..+-+.++.++.-.|.+.-...++...++...+.++.....|.+.-.+.|+.
T Consensus       157 ~~~e~~~~~ESsv~lW~--KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~  228 (366)
T KOG2796|consen  157 ANLEQGLAEESSIRLWR--KRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI  228 (366)
T ss_pred             HHHHhccchhhHHHHHH--HHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence            33444445555566533  221      2356788888888999999999999999987778899999999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 037695          193 RNAMYVLSMMQKAAVAPNLLICNTA-----IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIK  267 (701)
Q Consensus       193 ~~A~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  267 (701)
                      +.|...|+...+.....|....+.+     ...+.-.+++..|...|.++.... +.|+..-|.-.-+..-.|+...|++
T Consensus       229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence            9999999977654334444444333     334556678888888888888764 3445555544444555789999999


Q ss_pred             HHHHchhCCCCCCHHHHHHHH
Q 037695          268 LIDEMPLKGCSPDKVSYYTVM  288 (701)
Q Consensus       268 ~~~~m~~~g~~pd~~~~~~ll  288 (701)
                      .++.|...  .|...+-++++
T Consensus       308 ~~e~~~~~--~P~~~l~es~~  326 (366)
T KOG2796|consen  308 QLEAMVQQ--DPRHYLHESVL  326 (366)
T ss_pred             HHHHHhcc--CCccchhhhHH
Confidence            99999876  55555555444

>PRK11906 transcriptional regulator; Provisional

Probab=96.93  E-value=0.058  Score=54.44  Aligned_cols=149  Identities=13%  Similarity=0.023  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695          494 DLEEALSLLDDMYL-CKKDPD-TVTYTTIIDALSKN---------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV  562 (701)
Q Consensus       494 ~~~~A~~~~~~~~~-~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  562 (701)
                      ..+.|+.+|.+... +.+.|+ ...|..+..++...         ....+|.++-++..+.+ +.|+.....+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            45778999999872 224565 44565555554322         23556778888888876 67889888888888889


Q ss_pred             CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHH
Q 037695          563 GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD-ASTCHVLVESYLNKGIPLLAYKVA  640 (701)
Q Consensus       563 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~  640 (701)
                      ++++.|...|+++...+|+ ..++...+..+.-.|+.++|.+.++++++..+..- ..+....+..|+..+ .+.|+.+|
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence            9999999999999999999 78888889999999999999999999988765322 334444555777776 56777776


Q ss_pred             HHHH
Q 037695          641 CRMF  644 (701)
Q Consensus       641 ~~~~  644 (701)
                      -+-.
T Consensus       431 ~~~~  434 (458)
T PRK11906        431 YKET  434 (458)
T ss_pred             hhcc
Confidence            5433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.93  E-value=0.022  Score=55.40  Aligned_cols=281  Identities=13%  Similarity=0.073  Sum_probs=145.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh--C--CCC-CChhhHHHHHH
Q 037695          347 NGFCRVGELDQAKKMLQQMYHHGCKPNT----VSYTAFLNGLCHNGKSLEAREMINTSEE--E--WWT-PNAITYSVVMH  417 (701)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~-~~~~~~~~ll~  417 (701)
                      .-+|+.|+......+|+..++.|.. |.    .+|+.|-++|.-.+++++|+++...=+.  .  |-+ -.......|..
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            3488999999999999999987732 33    3566667777777888888876543111  0  000 00111112222


Q ss_pred             HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHH
Q 037695          418 GLRREGKLSEACDVVREM----VKKGFF-PTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV--NVVNFTSLIRGFC  490 (701)
Q Consensus       418 ~~~~~g~~~~A~~~~~~m----~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~  490 (701)
                      .+--.|.+++|+-....-    .+.|-. .....+..+...|...|+-            .|++.  +...++.-+.   
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~------------~g~~~pee~g~f~~ev~---  168 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC------------TGLEAPEEKGAFNAEVT---  168 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc------------cCCCChhhcccccHHHH---
Confidence            333344444444322211    111100 0111222222233222210            00000  0001110000   


Q ss_pred             hcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHH
Q 037695          491 QKGDLEEALSLLDDMYL----CKKD-PDTVTYTTIIDALSKNGRVEEATELMMKML----SKGLV-PTVVTYRTVIHRYC  560 (701)
Q Consensus       491 ~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~l~~~~~  560 (701)
                        ..++.|.++|.+-.+    .|-. .--..|..|...|.-.|+++.|+...+.-+    +.|-. .-...+..+.+++.
T Consensus       169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi  246 (639)
T KOG1130|consen  169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI  246 (639)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence              113344444443221    1100 011235555555566778888877654322    22311 12345677788888


Q ss_pred             hcCCHHHHHHHHHHHHhc----CCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHH
Q 037695          561 QVGRVEDLLKLLEKMLSK----QKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-----KADASTCHVLVESYL  628 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~----~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~  628 (701)
                      -.|+++.|.+.|+..+..    +..   ......|+..|.-...+++|+.++.+-+....     .-....|.+|+.+|.
T Consensus       247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~  326 (639)
T KOG1130|consen  247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN  326 (639)
T ss_pred             hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            889999998888776543    211   34556778888878888888888776443211     123456678888888


Q ss_pred             hcCChhhHHHHHHHHHh
Q 037695          629 NKGIPLLAYKVACRMFN  645 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~  645 (701)
                      ..|..++|+.+++..++
T Consensus       327 alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  327 ALGEHRKALYFAELHLR  343 (639)
T ss_pred             hhhhHHHHHHHHHHHHH
Confidence            88888888888776655

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.33  Score=44.74  Aligned_cols=133  Identities=9%  Similarity=0.034  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----HHHH
Q 037695          481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT-----YRTV  555 (701)
Q Consensus       481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-----~~~l  555 (701)
                      ..+.++.++.-.|.+.-.+..+++.++...+.++.....|++.-.+.|+.+.|...|++..+..-..+..+     ....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44556666667777777888888887766566677777888888888888888888886655322223222     2333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                      ...|.-++++..|...+.+++..+|. +...|.-+-++.-.|+...|++.++.+.+..+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            34455667788888888888877766 55566666666677888888888888877543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.91  E-value=0.22  Score=51.73  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-hHH----------HHHHHHHH
Q 037695          525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-TAY----------NQVIENLC  593 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~----------~~l~~~~~  593 (701)
                      -+...+.-|.++|..|-+.         ..++......++|++|..+-++..+..|+. ..|          ..--.+|.
T Consensus       758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh  828 (1081)
T KOG1538|consen  758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFH  828 (1081)
T ss_pred             hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHH
Confidence            3444455555666555321         234455556666666666665554443331 001          11123455


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 037695          594 SFGYLEEAGKILGKVLR  610 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~  610 (701)
                      ++|+..+|.++++++..
T Consensus       829 kAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  829 KAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HhcchHHHHHHHHHhhh
Confidence            66777777777776643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.90  E-value=0.33  Score=48.43  Aligned_cols=120  Identities=18%  Similarity=0.088  Sum_probs=59.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037695          527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ---------VGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGY  597 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  597 (701)
                      .|+.++|+.++..+....-.+++.+|..+...|-.         ....++|+..|.+.....|+..+--.++..+...|.
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGH  274 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCC
Confidence            55555565555554443334555555555544421         112667777777777766652222222222333332


Q ss_pred             H----HHHHHHH----HHHHHcC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695          598 L----EEAGKIL----GKVLRTA---SKADASTCHVLVESYLNKGIPLLAYKVACRMFNR  646 (701)
Q Consensus       598 ~----~~A~~~~----~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  646 (701)
                      .    .+..++-    ..+.+.+   ...+-..+..++.++.-.|++++|.+.+++|.+.
T Consensus       275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            1    1112221    1111122   2334455566677777777777777777777763

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.87  E-value=0.044  Score=45.90  Aligned_cols=117  Identities=15%  Similarity=0.024  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      +..-.....+.|++++|.+.|+.+..+.|.    ..+.-.++.+|.+.|++++|...+++.+++++.....-|.....++
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            334445556778888888888888888776    3456677888888888888888888888887643334444444443


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          628 LNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       628 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      ........   .+..+..  ..-|             .+...+|...|++++++.|.++
T Consensus        93 ~~~~~~~~---~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   93 SYYEQDEG---SLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHhhh---HHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence            33222221   1112221  1111             1224578888999998887554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.85  E-value=0.0045  Score=46.83  Aligned_cols=62  Identities=18%  Similarity=0.101  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          619 TCHVLVESYLNKGIPLLAYKVACRMFNR----NL-IPD-LKLCKKVSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      +++.++..|...|++++|+..++++++.    |. .|+ ..++..++.++...|++++|+++++++.+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445555555555555555555555431    10 111 25566667777777777777777766654

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.85  E-value=0.008  Score=44.74  Aligned_cols=54  Identities=28%  Similarity=0.268  Sum_probs=27.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      .|.+.+++++|.++++.++...|. +..+...+.++...|++++|...++++++.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344555555555555555555544 344444555555555555555555555544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.72  E-value=0.71  Score=45.63  Aligned_cols=105  Identities=13%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          377 YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR  456 (701)
Q Consensus       377 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  456 (701)
                      .+..|.-+...|+...|.++-.+..    .|+..-|-..+.+++..++|++...+...      +-++..|..++..|.+
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~  249 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK  249 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence            3334444455555555555544432    25555555666666666666554443221      1123455555566666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSL  501 (701)
Q Consensus       457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~  501 (701)
                      .|+..+|..+...+          .+..-+..|.++|++.+|.+.
T Consensus       250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence            66655555555431          113345555555655555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.69  E-value=0.038  Score=44.67  Aligned_cols=92  Identities=16%  Similarity=0.074  Sum_probs=52.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCH--hhHHHHHHHHHhcC
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-RNLIPDL--KLCKKVSERLILEG  666 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~--~~~~~l~~~~~~~g  666 (701)
                      -++...|+++.|++.|.+.+..-++ .+..||.-..++.-+|+.++|++-+.++++ .|.....  ..|-.-+..|...|
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            3455566666666666666654422 556666666666666666666666666665 2222111  23333444555666


Q ss_pred             CHHHHHHHHHHHHHcC
Q 037695          667 KSEEADTLMLRFVERG  682 (701)
Q Consensus       667 ~~~~A~~~~~~~~~~~  682 (701)
                      +.+.|..-|+.+-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            6666666666666665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.65  E-value=0.13  Score=44.57  Aligned_cols=70  Identities=23%  Similarity=0.247  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhh
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-----RNLIPDLKL  654 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~  654 (701)
                      +...++..+...|++++|..++++++... +.+...|..++.+|...|+...|+..|+++.+     .|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34455556666777777777777776655 33666777777777777777777777666543     366666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.62  E-value=0.033  Score=51.93  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHH
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVI  589 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~  589 (701)
                      .|+.-+.. .+.|++..|...|...++..  -.-.+..+..|..++...|++++|..+|..+.+..|.    +.++..|+
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            45544443 34555666666666666642  0112334555666666677777777777666666554    45666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcC
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      .+..+.|+.++|...|+++++.-
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHC
Confidence            66666777777777776666643

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.037  Score=54.32  Aligned_cols=96  Identities=16%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-TAYNQVIENLC  593 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~  593 (701)
                      .++..+.-+|.+.+++..|++..++.+..+ ++|...+..-..+|...|+++.|+..|+++++..|.. .+-+.|+.+--
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345667778888888888888888888875 6778887778888888888888888888888888874 44445555444


Q ss_pred             hcCCHHH-HHHHHHHHHHc
Q 037695          594 SFGYLEE-AGKILGKVLRT  611 (701)
Q Consensus       594 ~~g~~~~-A~~~~~~~~~~  611 (701)
                      +.....+ ..++|..|...
T Consensus       337 k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            4444333 35666666543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.58  E-value=1.2  Score=46.46  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR  558 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  558 (701)
                      ..+|+..+.-....|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            344555555555555555555555554310 0111122333333333335555555554444433222222221111111


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695          559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG  602 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  602 (701)
                      .-..|+++.|..+++.+.+..|. ......-+....+.|+.+.+.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            22345555555555555555544 223333344444555555554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.054  Score=51.43  Aligned_cols=114  Identities=18%  Similarity=0.110  Sum_probs=52.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHH
Q 037695          492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY----RTVIHRYCQVGRVED  567 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~~  567 (701)
                      .|++.+|...++++.+. .+.|...+..--.+|...|+...-...++++... ..||...|    ..+.-++...|-+++
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            44555555555555443 2334444554455555555555555555554433 12222211    112222334555555


Q ss_pred             HHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          568 LLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGK  607 (701)
Q Consensus       568 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  607 (701)
                      |.+.-++.++.++. .-+..++...+-..|+.+++.++..+
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            55555555555443 23333444444455555555555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.55  E-value=0.16  Score=48.95  Aligned_cols=227  Identities=13%  Similarity=0.073  Sum_probs=115.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHh
Q 037695          419 LRREGKLSEACDVVREMVKKG--FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK--GCAVNV---VNFTSLIRGFCQ  491 (701)
Q Consensus       419 ~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~---~~~~~ll~~~~~  491 (701)
                      +....+.++|+..+.+.+.+-  ...--.++..+..+.+..|.++++...--.....  ......   ..|..+.+++-+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777665531  1112345666677777777776665442221110  011111   122233333333


Q ss_pred             cCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc
Q 037695          492 KGDLEEALSLLDDMYL-CKKDP---DTVTYTTIIDALSKNGRVEEATELMMKMLSKGL---VP--TVVTYRTVIHRYCQV  562 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~-~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~  562 (701)
                      .-++.+++.+-..-.. .|..|   -.....++..++...+.++++++.|+...+..-   .|  ....+..|...|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            3344444443333221 11111   112233455566666677777777776654311   11  133566677777777


Q ss_pred             CCHHHHHHHHHHHHhcCC-----C-h-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHH
Q 037695          563 GRVEDLLKLLEKMLSKQK-----C-R-----TAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADAS----TCHVLVES  626 (701)
Q Consensus       563 g~~~~A~~~~~~~~~~~p-----~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~  626 (701)
                      .++++|.-+..++...-.     + .     .+...+.-+|...|++..|.+.-+++.+... .-|..    ....+++.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            777777766665544311     1 1     1223445556666666666666666544321 11222    23445667


Q ss_pred             HHhcCChhhHHHHHHHHHh
Q 037695          627 YLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       627 ~~~~g~~~~A~~~~~~~~~  645 (701)
                      |...|+.+.|..-|+.+..
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            7777777777777776665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.51  E-value=0.015  Score=43.89  Aligned_cols=25  Identities=32%  Similarity=0.618  Sum_probs=10.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      |+.+...|...|++++|+..|++++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al   32 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKAL   32 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444444444444444443

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.50  E-value=0.6  Score=46.61  Aligned_cols=163  Identities=11%  Similarity=0.006  Sum_probs=106.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc--CCChhHHHHHHH
Q 037695          519 TIIDALSKNGRVEEATELMMKMLSKG---LVPTVVTYRTVIHRYCQ---VGRVEDLLKLLEKMLSK--QKCRTAYNQVIE  590 (701)
Q Consensus       519 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~  590 (701)
                      .++-+|....+++..+++.+.+....   +.-....-...+-++.+   .|+.++|++++..++..  .+++.++..+++
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            44556888899999999999988741   12233333345556677   99999999999985544  234788888777


Q ss_pred             HHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh----HHHHH----HHHHhCCCCC---
Q 037695          591 NLCS---------FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL----AYKVA----CRMFNRNLIP---  650 (701)
Q Consensus       591 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~----~~~~~~~~~p---  650 (701)
                      .|..         ....++|+..|.+.-+..  |+...-..++..+...|...+    ..++.    ..+.++|...   
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            7652         234789999999987754  454443444445555554222    22222    2222344332   


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          651 DLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      +.-.+..++.+.+-.|++++|.+.+++|.+..+
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence            334445677788889999999999999998753

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=1.7  Score=46.56  Aligned_cols=113  Identities=14%  Similarity=0.199  Sum_probs=79.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID  522 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  522 (701)
                      ..-+.+--+.-+...|+..+|.++-.+..    -||-..|-.-+.+++..+++++-.++-+.+.      ++.-|.....
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe  752 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE  752 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence            33445555666677788888888766653    3577777777888888888888777665542      2456777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK  574 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  574 (701)
                      +|.+.|+.++|.+++-+...     ..    -...+|.+.|++.+|.++--+
T Consensus       753 ~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  753 ACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence            88888998898888876532     11    456778888888888766543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.45  E-value=0.42  Score=42.76  Aligned_cols=178  Identities=15%  Similarity=0.022  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          495 LEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      +.-|.--|.+...  +.|+ +..||.|.--+...|+++.|.+.|+...+....-+-...+.-+ ++.-.|++.-|.+-+.
T Consensus        81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~  157 (297)
T COG4785          81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL  157 (297)
T ss_pred             HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence            3333333444333  3444 4567777777777888888888888777653111111122212 2334677777777777


Q ss_pred             HHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHhCCCCCC-
Q 037695          574 KMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHV-LVESYLNKGIPLLAYKVACRMFNRNLIPD-  651 (701)
Q Consensus       574 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-  651 (701)
                      +.-+.+|+.+--.-.+..--..-+..+|..-+.+--+   ..|...|.. ++..|.-+=..+.+   ++++.. +-..+ 
T Consensus       158 ~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l---~~~~~a-~a~~n~  230 (297)
T COG4785         158 AFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETL---MERLKA-DATDNT  230 (297)
T ss_pred             HHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHH---HHHHHh-hccchH
Confidence            7766666533222222222344556666544433222   223333322 22222211111211   222222 11111 


Q ss_pred             ------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          652 ------LKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       652 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                            ..+|-.+++-+...|+.++|..+|+-++..+
T Consensus       231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence                  2566677777778888888888887766543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.44  E-value=0.076  Score=44.52  Aligned_cols=79  Identities=13%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--hHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR--TAYNQVIE  590 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~  590 (701)
                      ..|.. .....+.|++++|.+.|+.+...-  -+-....-..++.+|.+.+++++|...+++.++.+|..  ..|.....
T Consensus        12 ~ly~~-a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   12 ELYQE-AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            33443 344568899999999999998861  12234566778899999999999999999999999982  34555555


Q ss_pred             HHHh
Q 037695          591 NLCS  594 (701)
Q Consensus       591 ~~~~  594 (701)
                      +++.
T Consensus        91 gL~~   94 (142)
T PF13512_consen   91 GLSY   94 (142)
T ss_pred             HHHH
Confidence            5544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.41  E-value=0.81  Score=42.55  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=22.6

Q ss_pred             hcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          456 REGKMDGAKKFMQECLNKG--CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL  507 (701)
Q Consensus       456 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  507 (701)
                      +.|++++|...|+.+....  .+-...+.-.++-++.+.++++.|+..+++...
T Consensus        46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~   99 (254)
T COG4105          46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR   99 (254)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3445555555555444321  011122233334444455555555555555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.33  E-value=0.019  Score=57.67  Aligned_cols=101  Identities=12%  Similarity=-0.064  Sum_probs=73.7

Q ss_pred             CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhH
Q 037695          579 QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA--STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLC  655 (701)
Q Consensus       579 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  655 (701)
                      +|+ ...++.++.+|...|++++|+..|+++++.++....  .+|..++.+|...|++++|+..++++++.+ .   ..|
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f  146 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKF  146 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhH
Confidence            344 678999999999999999999999999997654221  469999999999999999999999999931 2   123


Q ss_pred             HHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 037695          656 KKVSE--RLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       656 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ..+..  .+....+..+..++++.+.+-|.
T Consensus       147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        147 STILNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            21111  11222344567777777776664

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.30  E-value=0.031  Score=56.28  Aligned_cols=66  Identities=23%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       546 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      +.+...++.+..+|.+.|++++|+..|+++++.+|+.    .+|..++.+|...|++++|+..++++++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4568889999999999999999999999999999983    35899999999999999999999999985

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.26  E-value=1.3  Score=43.44  Aligned_cols=266  Identities=14%  Similarity=0.138  Sum_probs=156.5

Q ss_pred             CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695          338 DVVTYTAVVNG--FCRVGELDQAKKMLQQMYHHGCKPNTVS--YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS  413 (701)
Q Consensus       338 ~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  413 (701)
                      |...+-.|+.+  -.-.|+++.|.+-|+.|...   |....  ...|.-.--+.|..+.|..+-...-... +.-...+.
T Consensus       117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~  192 (531)
T COG3898         117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR  192 (531)
T ss_pred             cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence            43334444433  34578999999999999863   32221  2233333346788888888777766542 23345677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 037695          414 VVMHGLRREGKLSEACDVVREMVKKG-FFPTPVE--INLLIQSLC---REGKMDGAKKFMQECLNKGCAVNVVNF-TSLI  486 (701)
Q Consensus       414 ~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll  486 (701)
                      .++...+..|+++.|+++++.-.... +.++..-  -..|+.+-+   -..+...|...-.+..+  ..|+..-- -.-.
T Consensus       193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA  270 (531)
T COG3898         193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA  270 (531)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence            88888899999999999888765542 2333221  112222111   12234455554444443  34443322 2234


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 037695          487 RGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVP-TVVTYRTVIHRYCQVGR  564 (701)
Q Consensus       487 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p-~~~~~~~l~~~~~~~g~  564 (701)
                      .++.+.|+..++-.+++.+-+....|+.  +..  ..+.+.|+.  ++.-+++.... .++| +.++...+..+-...|+
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e  344 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE  344 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence            6677888888888888888775444443  222  223344543  22222222221 1233 46666677777778888


Q ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC
Q 037695          565 VEDLLKLLEKMLSKQKCRTAYNQVIENLCSF-GYLEEAGKILGKVLRTASKA  615 (701)
Q Consensus       565 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~  615 (701)
                      +..|..--+......|....|..|.+.-... |+-.++...+.+.++..-.|
T Consensus       345 ~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         345 FSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             hHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            8888777777777777777777777766544 88888888888877654444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.06  E-value=1.2  Score=41.34  Aligned_cols=181  Identities=13%  Similarity=0.078  Sum_probs=95.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 037695          486 IRGFCQKGDLEEALSLLDDMYLCKK--DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-LVPTVVTYRTVIHRYCQV  562 (701)
Q Consensus       486 l~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~  562 (701)
                      +..-.+.|++++|.+.|+.+.....  +-...+.-.++.++.+.+++++|+...++.+..- -.||. .|..-+.+++.-
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~  119 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYF  119 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHh
Confidence            3344566788888888887775421  1123455566667777788888888877777652 22332 233333333321


Q ss_pred             -------CC---HHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          563 -------GR---VEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI  632 (701)
Q Consensus       563 -------g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  632 (701)
                             .+   ...|..-|++.+++.|+..-             ...|..-+..+...    =..--..++.-|.+.|.
T Consensus       120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~  182 (254)
T COG4105         120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDA----LAGHEMAIARYYLKRGA  182 (254)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence                   11   23455556666666665210             00111111100000    00000134566777888


Q ss_pred             hhhHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          633 PLLAYKVACRMFNRNLIPD--LKLCKKVSERLILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       633 ~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                      +..|..-++++++.-....  ...+..+..+|.+.|..++|...-.-+....++
T Consensus       183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~  236 (254)
T COG4105         183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD  236 (254)
T ss_pred             hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence            8888888888877422211  145556667777788877777765444443333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.01  E-value=0.1  Score=45.76  Aligned_cols=94  Identities=13%  Similarity=0.029  Sum_probs=55.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQKCR------TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      .+-+.+.|++++|..-|..++..-|..      ..|..-+.++.+.+.++.|+.-..++++.++. ....+..-+.+|.+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek  180 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK  180 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence            344566677777777777777665541      23344455666667777777777777665533 22222233446666


Q ss_pred             cCChhhHHHHHHHHHhCCCCCCH
Q 037695          630 KGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       630 ~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      ...+++|+.-|+++++  ..|..
T Consensus       181 ~ek~eealeDyKki~E--~dPs~  201 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILE--SDPSR  201 (271)
T ss_pred             hhhHHHHHHHHHHHHH--hCcch
Confidence            6667777777777766  44443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.93  E-value=0.63  Score=45.05  Aligned_cols=227  Identities=12%  Similarity=0.039  Sum_probs=144.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH----HHHcC-CCCCHHHHHHHHHHHHh
Q 037695          384 LCHNGKSLEAREMINTSEEEW--WTPNAITYSVVMHGLRREGKLSEACDVVRE----MVKKG-FFPTPVEINLLIQSLCR  456 (701)
Q Consensus       384 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~-~~~~~~~~~~li~~~~~  456 (701)
                      +....+.++|+..+......-  ...-..+|..+..+.++.|.+++++..--.    ..+.. -..--..|..+.+++.+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678888888887766531  112234566677777888888776654322    22211 00112345556666666


Q ss_pred             cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc
Q 037695          457 EGKMDGAKKFMQECLNK-GCAV---NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-----DPDTVTYTTIIDALSKN  527 (701)
Q Consensus       457 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~  527 (701)
                      .-++.+++.+-...... |..|   .-...-++..++...+.++++++.|+...+...     ......+..|...|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            66666777666655543 2222   112334466778888899999999998775211     12345788999999999


Q ss_pred             CCHHHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----hhHHHHHHHH
Q 037695          528 GRVEEATELMMKMLS----KGLVPTVVTY-----RTVIHRYCQVGRVEDLLKLLEKMLSK---QKC----RTAYNQVIEN  591 (701)
Q Consensus       528 g~~~~A~~~~~~m~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~  591 (701)
                      .++++|.-+..+..+    .++..=..-|     ..|.-++...|..-+|.+.-+++.+.   ..+    ......++++
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            999999887766554    2332212223     33445677889888888888877654   233    2345678999


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 037695          592 LCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~  610 (701)
                      |...|+.+.|..-|+.+..
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            9999999999999988764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.91  E-value=1.5  Score=41.08  Aligned_cols=200  Identities=24%  Similarity=0.166  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          444 PVEINLLIQSLCREGKMDGAKKFMQECLNK-GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID  522 (701)
Q Consensus       444 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  522 (701)
                      ...+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence            344555555566666666666666555442 123344455555556666666677777777665533222 122222222


Q ss_pred             -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCC
Q 037695          523 -ALSKNGRVEEATELMMKMLSKGL--VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGY  597 (701)
Q Consensus       523 -~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~  597 (701)
                       ++...|+++.|...+.+......  ......+......+...++.+.+...+..+....+.  ...+..+...+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             56677777777777777654211  012333344444456677777777777777776655  4566677777777777


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          598 LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       598 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ++.|...+..+...... ....+..+...+...|..+.+...+.+...
T Consensus       218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888777765322 244455555555566667778777777777

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.90  E-value=0.16  Score=41.27  Aligned_cols=89  Identities=21%  Similarity=0.147  Sum_probs=43.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--h---hHHHHHHHHHHhcCC
Q 037695          523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--R---TAYNQVIENLCSFGY  597 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~  597 (701)
                      +++..|+.+.|++.|.+.+.. .|-.+..|+.-..++.-+|+.++|+.-++++++....  .   .+|-.-+..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            344555555555555555543 2334555555555555555555555555555544221  1   122233344444555


Q ss_pred             HHHHHHHHHHHHHcC
Q 037695          598 LEEAGKILGKVLRTA  612 (701)
Q Consensus       598 ~~~A~~~~~~~~~~~  612 (701)
                      -+.|..-|+.+-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            555555555554444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.47  Score=44.86  Aligned_cols=141  Identities=16%  Similarity=0.087  Sum_probs=74.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH--HHHHHHHHHhcCCHHH
Q 037695          523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA--YNQVIENLCSFGYLEE  600 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~  600 (701)
                      .....|++.+|..+|....... +-+......++.+|...|+++.|..++..+.........  ...-+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            3456677777777777776653 333455566667777777777777777766554433211  1222334444433333


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC
Q 037695          601 AGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEG  666 (701)
Q Consensus       601 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  666 (701)
                      ...+-.+.-. + +-|...-..+...|...|+.+.|++.+-.+++++..- |...-..++..+.--|
T Consensus       222 ~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         222 IQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            3333333322 1 2245555566666777777777776665555532211 3344444555554444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.88  E-value=1  Score=45.99  Aligned_cols=17  Identities=29%  Similarity=0.180  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHcCCCCC
Q 037695          670 EADTLMLRFVERGHIQP  686 (701)
Q Consensus       670 ~A~~~~~~~~~~~~~~~  686 (701)
                      .|.+.+.++++.+|-.|
T Consensus       364 ~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  364 NAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             HHHHHHHHHHHhCCCCc
Confidence            46788888888887544

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.87  E-value=0.52  Score=49.66  Aligned_cols=175  Identities=17%  Similarity=0.184  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHH
Q 037695          428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV------VNFTSLIRGFCQ----KGDLEE  497 (701)
Q Consensus       428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~----~g~~~~  497 (701)
                      ...+|.-++.. +||   .+..++....-.||-+.+.+.+....+.+.--.+      ..|+.++..++.    ....+.
T Consensus       176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~  251 (468)
T PF10300_consen  176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE  251 (468)
T ss_pred             HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence            34455555544 233   3455666666778888888888776654211111      123333333332    345667


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          498 ALSLLDDMYLCKKDPDTVTYTTI-IDALSKNGRVEEATELMMKMLSK--GL-VPTVVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       498 A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      |.+++..+.+.  -|+...|... .+.+...|++++|++.|++....  .. ......+.-++..+.-..+|++|.+.|.
T Consensus       252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~  329 (468)
T PF10300_consen  252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL  329 (468)
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence            77777777663  4555554433 34455677777777777765532  11 1123344455566667777777777777


Q ss_pred             HHHhcCCC-hhHHHHHH-HHHHhcCCH-------HHHHHHHHHH
Q 037695          574 KMLSKQKC-RTAYNQVI-ENLCSFGYL-------EEAGKILGKV  608 (701)
Q Consensus       574 ~~~~~~p~-~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~  608 (701)
                      .+.+.... ...|..+. .++...|+.       ++|..++.++
T Consensus       330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            77765544 33333332 233355666       5555555543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.85  E-value=2.1  Score=42.31  Aligned_cols=101  Identities=25%  Similarity=0.284  Sum_probs=46.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHH
Q 037695          522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  601 (701)
                      .-+...|+...|.++-.+.   . .|+..-|...+.+++..++|++-.++...  ++  ++.-|..++.+|.+.|+..+|
T Consensus       185 ~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK--sPIGyepFv~~~~~~~~~~eA  256 (319)
T PF04840_consen  185 RKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK--SPIGYEPFVEACLKYGNKKEA  256 (319)
T ss_pred             HHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC--CCCChHHHHHHHHHCCCHHHH
Confidence            3334445554444443333   1 24455555555555555555554443321  11  123344455555555555555


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVA  640 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  640 (701)
                      ..++.++     + +    ..-+..|.++|++.+|.+.+
T Consensus       257 ~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  257 SKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             HHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence            5555441     1 1    12344455555555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.80  E-value=2.1  Score=41.76  Aligned_cols=188  Identities=13%  Similarity=0.070  Sum_probs=102.8

Q ss_pred             hcC-CHHHHHHHHHHHHhC--------CCCCCH-----HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHH
Q 037695          491 QKG-DLEEALSLLDDMYLC--------KKDPDT-----VTYTTIIDALSKNGRVE---EATELMMKMLSKGLVPTVVTYR  553 (701)
Q Consensus       491 ~~g-~~~~A~~~~~~~~~~--------~~~p~~-----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~  553 (701)
                      ..+ +++.|...+++..+.        ...|+.     .++..++.+|...+..+   +|..+++.+... .+-.+..+.
T Consensus        47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~  125 (278)
T PF08631_consen   47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFL  125 (278)
T ss_pred             HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHH
Confidence            344 777776666554431        123332     35677778888777654   456666666544 233355555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH---
Q 037695          554 TVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCS--FGYLEEAGKILGKVLRTASKADAS--TCHVLVE---  625 (701)
Q Consensus       554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~---  625 (701)
                      .-+..+.+.++.+.+.+.+.+|+..-+ ....+..++..+..  ......|...++.++...+.|...  .-..++.   
T Consensus       126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~  205 (278)
T PF08631_consen  126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVL  205 (278)
T ss_pred             HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            666777778889999999999987754 23444444444421  233456777777777666655553  1112222   


Q ss_pred             HHHhcCChh------hHHHHHHHHHh---CCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          626 SYLNKGIPL------LAYKVACRMFN---RNLIPDL-----KLCKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       626 ~~~~~g~~~------~A~~~~~~~~~---~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                      .....++..      ....++....+   ..+.+..     ......+..+.+.++|++|.++|+-..
T Consensus       206 ~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  206 LTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            112222222      22222332222   1222221     222334556678999999999998654

It is also involved in sporulation [].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.77  E-value=3.5  Score=46.72  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHH
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT----TIIDALSKNGRVEEA  533 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A  533 (701)
                      ++++.|+..+..+.       ...|.-.++.-.++|.+.+|+.++        .|+...+.    +....+...+.+++|
T Consensus       894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A  958 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA  958 (1265)
T ss_pred             HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH
Confidence            44555555444432       223333444445566666666654        45554444    444445566777787


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      .-.|+..-+         ...-+.+|..+|+|.+|+.+..++...... ...-..|+.-+...++.-+|-++..+...  
T Consensus       959 al~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-- 1027 (1265)
T KOG1920|consen  959 ALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-- 1027 (1265)
T ss_pred             HHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--
Confidence            777766533         123456777888888888887766432111 22335677778888888888888877654  


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695          613 SKADASTCHVLVESYLNKGIPLLAYKVACRMF  644 (701)
Q Consensus       613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  644 (701)
                       .|.     ..+..|++...+++|+.+.....
T Consensus      1028 -d~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1028 -DPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             -CHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence             222     23445667777788877765444

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.77  E-value=2.7  Score=42.89  Aligned_cols=78  Identities=12%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHH
Q 037695          136 RYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA-GKLRNAMYVLSMMQKAAVAPNLLIC  214 (701)
Q Consensus       136 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~  214 (701)
                      .|+.|+..|..-+..+-+.+.+.....+|.+|...+ +.++..|-.-....... -+++.|..+|....+.+ +.++..|
T Consensus       100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw  177 (568)
T KOG2396|consen  100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLW  177 (568)
T ss_pred             hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHH
Confidence            456677777777777777777777777777776653 33555555444433332 34667777776666554 3333344


Q ss_pred             H
Q 037695          215 N  215 (701)
Q Consensus       215 ~  215 (701)
                      .
T Consensus       178 ~  178 (568)
T KOG2396|consen  178 K  178 (568)
T ss_pred             H
Confidence            3

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.76  E-value=0.69  Score=40.89  Aligned_cols=93  Identities=15%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE  665 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  665 (701)
                      ++..+...|++++|...++..+......+  ..+--.|.......|.+++|+..+......++.  ......-++++...
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k  172 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence            45566677888888877777664322111  112233556677778888888777766554332  23455567788888


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 037695          666 GKSEEADTLMLRFVERG  682 (701)
Q Consensus       666 g~~~~A~~~~~~~~~~~  682 (701)
                      |+.++|+.-|+++++.+
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            88888888888888876

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.70  E-value=0.14  Score=44.39  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVL-----RTASKADASTC  620 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~  620 (701)
                      +...++..+...|++++|..+.++++..+|. ...+..++.+|...|+..+|.++|+++.     +.|..|++.+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            3455666677788888888888888888877 5677888888888888888888887763     34667776553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=4.3  Score=44.24  Aligned_cols=119  Identities=15%  Similarity=0.195  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695          143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMV----AYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI  218 (701)
Q Consensus       143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll  218 (701)
                      ....-+..+.+...++-|..+..   ..+  .++.+...+..    .+.+.|++++|...|-+.+..- .|     ..++
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi  404 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI  404 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence            34556677777777777776643   222  34444444444    3446788888888776655321 22     2345


Q ss_pred             HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHch
Q 037695          219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMP  273 (701)
Q Consensus       219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  273 (701)
                      .-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-.
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            5556666666667777888777753 55566778888888888888777776655

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.64  E-value=0.93  Score=38.81  Aligned_cols=131  Identities=11%  Similarity=0.108  Sum_probs=82.4

Q ss_pred             hcCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          103 LRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYL  182 (701)
Q Consensus       103 ~~~~~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  182 (701)
                      .....++.++..+...+.+...+.+.+++....  +.++..++.++..+++.. .......+..   .   .+......+
T Consensus         5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~   75 (140)
T smart00299        5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKV   75 (140)
T ss_pred             CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHH
Confidence            345667778888877788889999988887664  467778888888888753 3333333331   1   233445557


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 037695          183 MVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVG-NKLAKALRFLERMQLAGITPNVLTYNCLIKGYC  257 (701)
Q Consensus       183 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  257 (701)
                      +..|.+.+.++++..++.++..         +...+..+... ++++.|.+.+.+      ..+...|..++..+.
T Consensus        76 ~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       76 GKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            7777777777777777776531         33344444444 667777766664      124456666665554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.61  E-value=4.1  Score=43.79  Aligned_cols=323  Identities=14%  Similarity=0.123  Sum_probs=180.3

Q ss_pred             cCCCcCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCC
Q 037695          333 MGCIPDVVTYT-----AVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKS---LEAREMINTSEEEW  404 (701)
Q Consensus       333 ~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~  404 (701)
                      -|++.+..-|.     .+|+-+...+.+..|+++-+.+...-.. +...|.....-+.+..+.   +-+.++-+++... 
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-  503 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-  503 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence            35665555443     3566677788889998888776542211 145666666666665322   2222233333221 


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------
Q 037695          405 WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGF----FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKG------  474 (701)
Q Consensus       405 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------  474 (701)
                      . .....|..+...-...|+.+-|..+++.=...+.    -.+..-+...+.-+.+.|+.+....++..+...-      
T Consensus       504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~  582 (829)
T KOG2280|consen  504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF  582 (829)
T ss_pred             C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            2 4456677777777788998888877763211110    0011223455556667777777766666554431      


Q ss_pred             -----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--HHHhC-CCCCCHHHHHHHHHHHHhcCCHH---HH--
Q 037695          475 -----CAVNVVNFTSLIR--------GFCQKGDLEEALSLLD--DMYLC-KKDPDTVTYTTIIDALSKNGRVE---EA--  533 (701)
Q Consensus       475 -----~~~~~~~~~~ll~--------~~~~~g~~~~A~~~~~--~~~~~-~~~p~~~~~~~li~~~~~~g~~~---~A--  533 (701)
                           .+.....|..+++        .+.+.++-..++..|.  ..... -+.+-.........+|.+.....   +|  
T Consensus       583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e  662 (829)
T KOG2280|consen  583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE  662 (829)
T ss_pred             HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence                 1111222222221        1111222222222211  10000 01122222334445555544321   11  


Q ss_pred             -----HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          534 -----TELMMKMLSK-GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGK  607 (701)
Q Consensus       534 -----~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  607 (701)
                           +.+.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+..  -|+...|-.-+.+++..+++++-.++-+.
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--ipdKr~~wLk~~aLa~~~kweeLekfAks  740 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--IPDKRLWWLKLTALADIKKWEELEKFAKS  740 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence                 2222222222 333344455566677788899999988877663  46777787788899999999998877765


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037695          608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLM  675 (701)
Q Consensus       608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  675 (701)
                      .      ..|.-|.-++.+|.+.|+.++|.+++-+.-.     ..    ....+|.+.|++.+|.++-
T Consensus       741 k------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  741 K------KSPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             c------CCCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence            3      2366677788999999999999988754432     11    4667889999999988654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.39  E-value=5.2  Score=43.62  Aligned_cols=153  Identities=12%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHH----cC------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037695          143 VYYMMLEILSKTKLCQGAKRVLRLMAR----RG------------IECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAA  206 (701)
Q Consensus       143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  206 (701)
                      ..++++.++...+++-.-.-++..+..    .+            ..........-+..+.+...+.-|+.+-+.-    
T Consensus       285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~----  360 (933)
T KOG2114|consen  285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ----  360 (933)
T ss_pred             chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc----
Confidence            456777777777776554444443322    22            1123345566777778888888888776553    


Q ss_pred             CCCCHHHHHHHH----HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHH
Q 037695          207 VAPNLLICNTAI----HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKV  282 (701)
Q Consensus       207 ~~~~~~~~~~ll----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~  282 (701)
                       ..+..+...+.    ..+.+.|+++.|...|-+-... +.|     ..+|.-|....+...-..+++.+.+.|+. +..
T Consensus       361 -~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d  432 (933)
T KOG2114|consen  361 -HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD  432 (933)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence             23333344444    4445789999999887765533 233     24556677777777778888888888865 555


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHH
Q 037695          283 SYYTVMGYLCKEKRIKEVRDLMEKM  307 (701)
Q Consensus       283 ~~~~ll~~~~~~g~~~~a~~~~~~~  307 (701)
                      .-..|+.+|.+.++.+...++.+..
T Consensus       433 httlLLncYiKlkd~~kL~efI~~~  457 (933)
T KOG2114|consen  433 HTTLLLNCYIKLKDVEKLTEFISKC  457 (933)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHhcC
Confidence            5678899999999988777766554

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.31  E-value=0.49  Score=39.33  Aligned_cols=51  Identities=16%  Similarity=0.158  Sum_probs=33.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 037695          510 KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTVVTYRTVIHRYC  560 (701)
Q Consensus       510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~  560 (701)
                      ..|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-+.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4566777777777777777777777777766654 56666666666665443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.24  E-value=0.047  Score=35.62  Aligned_cols=30  Identities=17%  Similarity=0.371  Sum_probs=15.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC  581 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  581 (701)
                      +..+..+|.+.|++++|+++|+++++..|+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            344445555555555555555555555544

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.24  E-value=0.23  Score=41.29  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=44.3

Q ss_pred             cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh
Q 037695          333 MGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH-HGCKPNTVSYTAFLNGLCH  386 (701)
Q Consensus       333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~  386 (701)
                      ....|+..+..+++.+|+..+++..|+++++...+ .+++.+...|..|+.-...
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            34678999999999999999999999999998876 4577778888888875443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.18  E-value=1.8  Score=44.24  Aligned_cols=59  Identities=17%  Similarity=0.266  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      .+-..+..++.+.|+.++|++.++++.+..|.   ..+...|+.+|...+.+.++..++.+-
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            33344555666667777777777776665544   234456666666677777776666664

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=3.3  Score=39.40  Aligned_cols=142  Identities=18%  Similarity=0.167  Sum_probs=74.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          488 GFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVED  567 (701)
Q Consensus       488 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  567 (701)
                      .....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+-..--.........-+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            3445666666666666666532 222344455666667777777777776665433211112222223344444444444


Q ss_pred             HHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Q 037695          568 LLKLLEKMLSKQK-CRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTCHVLVESYLNKG  631 (701)
Q Consensus       568 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  631 (701)
                      ...+-.+.- .+| +...-..++..|...|+.++|...+-.+++.+. --|...-..|+..+..-|
T Consensus       222 ~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         222 IQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            444433333 344 356666677777777777777776666655422 123333444444444444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.98  E-value=2  Score=36.66  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=37.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695          484 SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG  563 (701)
Q Consensus       484 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  563 (701)
                      .++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....+..   .   .+......++..|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence            34444445555555555555555443 234445555555555432 2222232221   0   11122233445555555


Q ss_pred             CHHHHHHHHHHH
Q 037695          564 RVEDLLKLLEKM  575 (701)
Q Consensus       564 ~~~~A~~~~~~~  575 (701)
                      .++++.-++.++
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.88  E-value=0.11  Score=33.83  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                      ++..++..|...|++++|+++|+++++..+. |+..+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence            4455555666666666666666666555432 44444333

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.68  E-value=2.1  Score=37.08  Aligned_cols=121  Identities=10%  Similarity=0.056  Sum_probs=56.9

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHH-----HHHHHhcCCH
Q 037695          525 SKNGRVEEATELMMKMLSKGLVPTVV-TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQV-----IENLCSFGYL  598 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~  598 (701)
                      .+.+..++|+.-|..+.+.|...-+. ............|+-..|...|+++-...|.+.....+     ...+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            44555566666666655554322111 11122233445566666666666665554443333222     2334455555


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +....-.+-+-..+.+.-...-..|+-+-.+.|++..|.+.|..+..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            55555544443222222223334455555555666666655555554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.66  E-value=8  Score=41.97  Aligned_cols=178  Identities=16%  Similarity=0.122  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHcCCCcCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhc
Q 037695          320 IEEAKELVNQMSQMGCIPDVVTYTAVV----NG-FCRVGELDQAKKMLQQMYH-------HGCKPNTVSYTAFLNGLCHN  387 (701)
Q Consensus       320 ~~~a~~~~~~~~~~~~~p~~~~~~~li----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~  387 (701)
                      ...|..+++...+.|   +...-..+.    .+ +....+++.|+.+|+.+..       .|   .+.....+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            456666666666654   222222222    22 4456788888888888876       44   333455555566553


Q ss_pred             C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 037695          388 G-----KSLEAREMINTSEEEWWTPNAITYSVVMHGLRR-EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLC----RE  457 (701)
Q Consensus       388 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~  457 (701)
                      .     +...|..++......| .|+...+...+..... ..+...|.++|....+.|..   ..+-.+..+|.    -.
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence            2     5566777777777665 3444333222222222 23566777777777777632   12222222221    23


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK  509 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~  509 (701)
                      .+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+...|
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            35666777777766665 2221211222223333 55555555555555444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.61  E-value=2.5  Score=36.59  Aligned_cols=133  Identities=8%  Similarity=-0.011  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH--
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RT--AYNQVIENLCSFGYLEEAGKILGKVLRTASKADAS-TCHV--  622 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~--  622 (701)
                      ...|..-++ +.+.++.++|+.-|..+.+.+-. -+  +...........|+...|...|+++-.....|.+. -...  
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            334444433 45678899999999998877533 22  33445667788999999999999997765555443 1111  


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          623 LVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       623 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      -...+.-+|.++......+-+...+-......-..|+-+-.+.|++.+|.++|..+....
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence            234566778888766666555443222234666777778889999999999999998744

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=3.7  Score=37.81  Aligned_cols=53  Identities=17%  Similarity=0.076  Sum_probs=23.8

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCC-C-CC-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 037695          622 VLVESYLNKGIPLLAYKVACRMFNRN-L-IP-DLKLCKKVSERLILEGKSEEADTLM  675 (701)
Q Consensus       622 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~  675 (701)
                      ..|-.|+...++..|..+++...+.+ + .| +..+...|+.+|- .|+.+++..++
T Consensus       195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            33444455555555555555433311 1 11 2244444544442 45555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=1.3  Score=42.49  Aligned_cols=153  Identities=16%  Similarity=0.139  Sum_probs=92.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK---GCAVNVVNFTSLIRGFCQKGDLEE  497 (701)
Q Consensus       421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~  497 (701)
                      ..|+..+|...++++++. .|.|...+...=.+|.-.|+...-...++++...   +.|..+..-..+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            456677777777777765 3556666666677777778777777777776554   222222223334445567788888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK---GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK  574 (701)
Q Consensus       498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  574 (701)
                      |.+.-++..+.+ +-|.-.-.+....+...|++.++.++..+-...   +--.-...|-...-.+...+.++.|+++|++
T Consensus       194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            888877776643 334555566667777778888887766554332   1011112233334445566778888888874


Q ss_pred             H
Q 037695          575 M  575 (701)
Q Consensus       575 ~  575 (701)
                      -
T Consensus       273 e  273 (491)
T KOG2610|consen  273 E  273 (491)
T ss_pred             H
Confidence            3

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.50  E-value=0.83  Score=47.44  Aligned_cols=128  Identities=17%  Similarity=0.165  Sum_probs=74.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695          111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG  190 (701)
Q Consensus       111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  190 (701)
                      +++.|..+|-++.|++|-          .|+.   .-.....+.|+++.|.++..+.      .++..|..|.....+.|
T Consensus       301 i~~fL~~~G~~e~AL~~~----------~D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  301 IARFLEKKGYPELALQFV----------TDPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHTT-HHHHHHHS----------S-HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHhhc----------CChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcC
Confidence            556666677777777762          2221   2334455667777666654322      36667777777777777


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 037695          191 KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLID  270 (701)
Q Consensus       191 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  270 (701)
                      +++-|.+.|.+...         +..|+-.|.-.|+.+.-.++.+.....|      -+|....++.-.|+++++.++|.
T Consensus       362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777777542         5566666667777766666666665544      14444555555677777666665


Q ss_pred             Hc
Q 037695          271 EM  272 (701)
Q Consensus       271 ~m  272 (701)
                      +-
T Consensus       427 ~~  428 (443)
T PF04053_consen  427 ET  428 (443)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.34  E-value=1.5  Score=38.89  Aligned_cols=91  Identities=21%  Similarity=0.178  Sum_probs=58.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh
Q 037695          521 IDALSKNGRVEEATELMMKMLSKGLVPTV-----VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS  594 (701)
Q Consensus       521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~  594 (701)
                      ..-+.+.|++++|..-|...+.. +++..     ..|..-..++.+.+.++.|+.--.++++.+|. ..++..-+.+|-+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            44566777777777777777764 23322     22333345566777777777777777777776 4444555666777


Q ss_pred             cCCHHHHHHHHHHHHHcC
Q 037695          595 FGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       595 ~g~~~~A~~~~~~~~~~~  612 (701)
                      ..++++|+.-|+++++..
T Consensus       181 ~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESD  198 (271)
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence            777777777777777654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.16  E-value=4.5  Score=37.02  Aligned_cols=180  Identities=15%  Similarity=0.111  Sum_probs=90.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCH-HHHHHHHHHHHhcC
Q 037695          454 LCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMY----LCKKDPDT-VTYTTIIDALSKNG  528 (701)
Q Consensus       454 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~p~~-~~~~~li~~~~~~g  528 (701)
                      +.-.+.+++|..+|.+...               +|--..+|..|=..|.+.-    +.|-+.|. .+|....++| +.+
T Consensus        24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~   87 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV   87 (288)
T ss_pred             cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence            3445577778777765432               2223333444433333322    23333333 3455555544 455


Q ss_pred             CHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhc
Q 037695          529 RVEEATELMMKMLSK----G-LVPTVVTYRTVIHRYCQV-GRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSF  595 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~  595 (701)
                      ++.+|...++..++.    | +..-...+..+...|-.. .+++.|+..|+..-.-...       ...+-.++..-...
T Consensus        88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l  167 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL  167 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence            888888888877652    1 111111223344444433 5677777777776654322       11122233333466


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHH---HHH-H--HHhcCChhhHHHHHHHHHhCCCCCC
Q 037695          596 GYLEEAGKILGKVLRTASKADASTCHV---LVE-S--YLNKGIPLLAYKVACRMFNRNLIPD  651 (701)
Q Consensus       596 g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~-~--~~~~g~~~~A~~~~~~~~~~~~~p~  651 (701)
                      +++.+|+.+|+++.......+..-|..   ++. +  ++-.++.-.+...+++..+  ..|+
T Consensus       168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~  227 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPA  227 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCc
Confidence            888888888888877655434333322   111 1  2222455555556666666  4454

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.12  E-value=2.8  Score=34.49  Aligned_cols=136  Identities=16%  Similarity=0.200  Sum_probs=67.4

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHH
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGK  603 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~  603 (701)
                      -.|.+++..++..+....   .+..-++.++--....-+=+-..+.++.+-+....  -.....++.+|+..|..     
T Consensus        14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~-----   85 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL-----   85 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred             HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch-----
Confidence            456666666666666553   23444444443333333444444444444332211  11223344444444432     


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                                   .......+..+.++|.-+.--+++..+.+ +-.|++...-.++.+|.+.|+..+|.+++.++-++|.
T Consensus        86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence                         22233344556667776666666666654 3456677777788888888888888888888888774

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.98  E-value=0.49  Score=44.11  Aligned_cols=105  Identities=9%  Similarity=0.093  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 037695          442 PTPVEINLLIQSLCR-----EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVT  516 (701)
Q Consensus       442 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  516 (701)
                      -|..+|...+..+..     .+.++-....++.|.+.|+.-|..+|+.|++.+-+..                +.|... 
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv-  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV-  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence            345556555555543     3455666666666777777777777777766554322                112111 


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRV  565 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  565 (701)
                      +....-.|-  .+-+=++.++++|...|+.||.++-..|++++.+.+-.
T Consensus       128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence            111111121  12234788999999999999999999999999887653

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.87  E-value=0.5  Score=44.06  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=15.0

Q ss_pred             HHHHHHHchhCCCCCCHHHHHHHHHHHHHcC
Q 037695          265 AIKLIDEMPLKGCSPDKVSYYTVMGYLCKEK  295 (701)
Q Consensus       265 A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g  295 (701)
                      +++++++|...|+.||..+-..|+.++.+.+
T Consensus       142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~  172 (406)
T KOG3941|consen  142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN  172 (406)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence            4444455554455555544444444444443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.87  E-value=8.4  Score=39.11  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP---DTVTYTTIIDALSKNGRVEEATELMMKMLS  542 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  542 (701)
                      ...+|..++..+.+.|.++.|...+..+...+...   .+...-.-++.+...|+..+|+..++....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567777777778888888888777776533111   223333344555667777777777776666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.84  E-value=2.2  Score=44.31  Aligned_cols=74  Identities=24%  Similarity=0.329  Sum_probs=34.4

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDL  568 (701)
Q Consensus       489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A  568 (701)
                      ..+.|+++.|.++.++.      ++...|..|.......|+++-|.+.|.+..+         +..|+-.|.-.|+.+.-
T Consensus       328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L  392 (443)
T PF04053_consen  328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL  392 (443)
T ss_dssp             HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred             HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence            34455555555543322      2444555555555555555555555554322         33344444555555544


Q ss_pred             HHHHHHHHh
Q 037695          569 LKLLEKMLS  577 (701)
Q Consensus       569 ~~~~~~~~~  577 (701)
                      .++.+.+..
T Consensus       393 ~kl~~~a~~  401 (443)
T PF04053_consen  393 SKLAKIAEE  401 (443)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.73  E-value=0.074  Score=32.30  Aligned_cols=28  Identities=29%  Similarity=0.297  Sum_probs=12.2

Q ss_pred             HHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695          574 KMLSKQKC-RTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       574 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  601 (701)
                      ++++.+|+ ..+|..++..|...|++++|
T Consensus         4 kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    4 KAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            33444444 34444444444444444444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.57  E-value=7.9  Score=37.89  Aligned_cols=134  Identities=14%  Similarity=0.219  Sum_probs=74.2

Q ss_pred             HhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh--cC----ChhHHHHHHHHchhCC---CCCCHHHHHHHHHHHHHcCCh
Q 037695          227 LAKALRFLERMQLAGITPNVLTYNCLIKGYCD--LH----RIKDAIKLIDEMPLKG---CSPDKVSYYTVMGYLCKEKRI  297 (701)
Q Consensus       227 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g---~~pd~~~~~~ll~~~~~~g~~  297 (701)
                      ++..+.+++.|.+.|+..+.++|-+..-....  ..    ....|..+|+.|++.-   -.++..++..++..  ...+ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~-  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED-  154 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc-
Confidence            34456778888888888887776653333322  22    3457888999998763   23455566666533  2222 


Q ss_pred             hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 037695          298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDV--VTYTAVVNGFCRVGE--LDQAKKMLQQMYHHGCKPN  373 (701)
Q Consensus       298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~  373 (701)
                        ...+.                +.+..+++.+...|+..+.  ...+.++..+.....  ...+..+++.+.+.|+++.
T Consensus       155 --~e~l~----------------~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik  216 (297)
T PF13170_consen  155 --VEELA----------------ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK  216 (297)
T ss_pred             --HHHHH----------------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence              22222                3444566666666655432  233333332222222  3467777777777777776


Q ss_pred             HHHHHHHH
Q 037695          374 TVSYTAFL  381 (701)
Q Consensus       374 ~~~~~~li  381 (701)
                      ...|..+.
T Consensus       217 ~~~yp~lG  224 (297)
T PF13170_consen  217 YMHYPTLG  224 (297)
T ss_pred             cccccHHH
Confidence            66655443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.47  E-value=3.7  Score=33.79  Aligned_cols=56  Identities=14%  Similarity=0.256  Sum_probs=20.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  577 (701)
                      +..+...|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++-+
T Consensus        93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            333344444444444444433321 33444444444444444444444444444433

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.40  E-value=12  Score=39.43  Aligned_cols=115  Identities=7%  Similarity=-0.026  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHH
Q 037695          122 RVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYS-RAGKLRNAMYVLS  200 (701)
Q Consensus       122 ~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~  200 (701)
                      +.+...+.-....  +|.--..|......-.+.|..+.+.++|++-+.. ++.+...|......+. ..|+......+|+
T Consensus        62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe  138 (577)
T KOG1258|consen   62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFE  138 (577)
T ss_pred             HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            3444444433333  3444456777778888888888888888887753 6677777777766554 4467777777887


Q ss_pred             HHHHC-CC-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 037695          201 MMQKA-AV-APNLLICNTAIHVLVVGNKLAKALRFLERMQL  239 (701)
Q Consensus       201 ~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~  239 (701)
                      .+... |. -.+...|-..|..-..++++.....+++++++
T Consensus       139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile  179 (577)
T KOG1258|consen  139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE  179 (577)
T ss_pred             HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            77643 21 23445677777777777888888888888875

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.36  E-value=5.5  Score=35.43  Aligned_cols=88  Identities=14%  Similarity=0.029  Sum_probs=37.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          557 HRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI  632 (701)
Q Consensus       557 ~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  632 (701)
                      ..+...|++++|...++..+....+    ..+--.|++.....|.+++|...++.....+.  .+.....-+..+...|+
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~  174 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence            3344455555555555544432211    11122344444555555555555544322110  11112223445555555


Q ss_pred             hhhHHHHHHHHHhC
Q 037695          633 PLLAYKVACRMFNR  646 (701)
Q Consensus       633 ~~~A~~~~~~~~~~  646 (701)
                      .++|+.-|++.+..
T Consensus       175 k~~Ar~ay~kAl~~  188 (207)
T COG2976         175 KQEARAAYEKALES  188 (207)
T ss_pred             hHHHHHHHHHHHHc
Confidence            55555555555553

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.30  E-value=6.7  Score=36.21  Aligned_cols=47  Identities=21%  Similarity=0.247  Sum_probs=25.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMY  366 (701)
Q Consensus       318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  366 (701)
                      ..++.|.-+.+++.+.  +--+..|+-....|..+|..+.|-..+++.-
T Consensus        72 KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAa  118 (308)
T KOG1585|consen   72 KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAA  118 (308)
T ss_pred             HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence            3344455555555442  1223455666667777777776666665544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.24  E-value=0.76  Score=40.15  Aligned_cols=42  Identities=19%  Similarity=0.136  Sum_probs=23.8

Q ss_pred             hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          633 PLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       633 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      +++|..+|+++.+  ..|+..+|..-+...      .+|-++..++.+++
T Consensus        96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~  137 (186)
T PF06552_consen   96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG  137 (186)
T ss_dssp             HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence            4556666666666  677777777655443      23555555555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.05  E-value=0.15  Score=30.94  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=17.6

Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695          605 LGKVLRTASKADASTCHVLVESYLNKGIPLLAY  637 (701)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  637 (701)
                      |+++++..+. ++..|+.++..|...|++++|+
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            3444444422 5566666666666666666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.88  E-value=5.7  Score=34.29  Aligned_cols=50  Identities=14%  Similarity=0.000  Sum_probs=25.8

Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      +.++.+++..++..+.-..|. +..-..-+..+...|++.+|..+|+.+.+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            445555555555555555555 22223334445555555555555555543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.87  E-value=8.2  Score=36.06  Aligned_cols=191  Identities=13%  Similarity=0.122  Sum_probs=113.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcC
Q 037695          492 KGDLEEALSLLDDMYLCKKDPD---TVTYTTIIDALSKNGRVEEATELMMKMLSK---GL--VPTVVTYRTVIHRYCQVG  563 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~g  563 (701)
                      ..++++|+.-|++..+.....-   ......++..+.+.+++++....|.+|...   .+  .-+..+.+.+++..+.+.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            3466777777777665321111   223445667777777777777777776542   11  123455677777666666


Q ss_pred             CHHHHHHHHHHHHhc---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----C-------CHHHHHHHHH
Q 037695          564 RVEDLLKLLEKMLSK---QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK----A-------DASTCHVLVE  625 (701)
Q Consensus       564 ~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-------~~~~~~~l~~  625 (701)
                      +.+...++++.-+..   ..+    ..+-..|+..|...|.+.+-.++++++......    .       =..+|..-|.
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            666666666544322   111    223356777777777777777777766433111    1       1245666778


Q ss_pred             HHHhcCChhhHHHHHHHHHh-CCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          626 SYLNKGIPLLAYKVACRMFN-RNLIPDLKLCKKV----SERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       626 ~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      +|..+.+-..-..+|++.+. +...|.+-+...+    +....+.|.|++|-.-|-++.+.+
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            88888877777777877766 3445555333322    344567888888877666666554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.83  E-value=0.21  Score=29.86  Aligned_cols=30  Identities=17%  Similarity=0.129  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          655 CKKVSERLILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                      +-.++.++.+.|++++|.++|+++++..|.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            445777888888888888888888887764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.69  E-value=0.42  Score=45.75  Aligned_cols=94  Identities=11%  Similarity=0.006  Sum_probs=65.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPL  634 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  634 (701)
                      .+-|.++|++++|+..|.+.+...| ++..+..-+.+|.+..++..|..-...++.++ +.=...|..-+.+-...|...
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence            4567788888888888888887777 46667777778888888887777777666543 212334555555555667777


Q ss_pred             hHHHHHHHHHhCCCCCCH
Q 037695          635 LAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       635 ~A~~~~~~~~~~~~~p~~  652 (701)
                      +|.+-++..+.  +.|+.
T Consensus       183 EAKkD~E~vL~--LEP~~  198 (536)
T KOG4648|consen  183 EAKKDCETVLA--LEPKN  198 (536)
T ss_pred             HHHHhHHHHHh--hCccc
Confidence            77777777777  66664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.69  E-value=0.27  Score=30.27  Aligned_cols=25  Identities=12%  Similarity=0.062  Sum_probs=19.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          655 CKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       655 ~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                      +..++.+|.+.|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5678888888888888888888854

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.46  E-value=0.28  Score=29.59  Aligned_cols=26  Identities=23%  Similarity=0.160  Sum_probs=10.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          656 KKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       656 ~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      ..++.+|...|++++|+..|+++++.
T Consensus         5 ~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    5 YNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            33444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.36  E-value=0.41  Score=28.78  Aligned_cols=30  Identities=17%  Similarity=0.051  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          654 LCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      .+..++.++...|++++|++.|+++++..|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            445566666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.28  E-value=6.4  Score=33.98  Aligned_cols=56  Identities=16%  Similarity=0.093  Sum_probs=29.9

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCChh
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVT-YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRT  583 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  583 (701)
                      +.++.+++..++.-+.-.  .|.... -..-...+...|++.+|+++|+.+....|..+
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p   78 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP   78 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence            455666666666666553  333222 22223345566666666666666665555433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.10  E-value=1.1  Score=43.07  Aligned_cols=94  Identities=20%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL  598 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  598 (701)
                      -..-|.+.|++++|+..|..-+... +-+++++..-..+|.+...+..|..-...++..+.. ..+|..-+.+-...|+.
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            3567889999999999999887742 338888888899999999999888888777765533 45666666666677889


Q ss_pred             HHHHHHHHHHHHcCCC
Q 037695          599 EEAGKILGKVLRTASK  614 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~  614 (701)
                      .+|.+-++.++++.+.
T Consensus       182 ~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHHhHHHHHhhCcc
Confidence            9999999998886543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.95  E-value=0.45  Score=28.67  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      +|..+..+|...|++++|+..|+++++.+|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            344444444455555555555555444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.91  E-value=13  Score=36.20  Aligned_cols=20  Identities=15%  Similarity=-0.002  Sum_probs=13.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 037695          590 ENLCSFGYLEEAGKILGKVL  609 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~  609 (701)
                      ..+.+.+++++|..+|+-.+
T Consensus       254 ~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  254 KKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHhhcCHHHHHHHHHHHH
Confidence            34456677777777776544

It is also involved in sporulation [].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.69  E-value=30  Score=39.83  Aligned_cols=102  Identities=22%  Similarity=0.338  Sum_probs=54.1

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 037695          455 CREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV--TYTTIIDALSKNGRVEE  532 (701)
Q Consensus       455 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~  532 (701)
                      .....+++|--.|+..-+.         ..-+.+|..+|+|.+|+.+..++..   ..+..  +-..|+.-+...+++-+
T Consensus       950 ~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen  950 REELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred             HHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence            3445555555555543221         1235556666666666666665531   11211  12455566666777777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       533 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      |-++..+..+.   |     ...+..|++...|++|+++.....
T Consensus      1018 Aa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1018 AAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence            77766665542   1     223445666667777776665544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.61  E-value=0.39  Score=29.57  Aligned_cols=27  Identities=15%  Similarity=-0.009  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          619 TCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +|..|+..|...|++++|+.+|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356777888888888888888887553

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.44  E-value=2.1  Score=40.90  Aligned_cols=60  Identities=15%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVL  609 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  609 (701)
                      .++..++..+...|+++.+.+.+++....+|. ...|..++.+|.+.|+...|+..|+++.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            34555555555566666666666666655555 4555566666666666666666555543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.39  E-value=2.6  Score=37.94  Aligned_cols=87  Identities=14%  Similarity=0.032  Sum_probs=58.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695          524 LSKNGRVEEATELMMKMLSKGLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       524 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  601 (701)
                      |-..|-+.-|.--|.+...  +.|+ +..|+.+.--+...|+++.|.+.|+...+.+|. ..+...-+-.+.--|+++-|
T Consensus        75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA  152 (297)
T COG4785          75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA  152 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence            5555666666666666655  4454 666777777777888888888888888888876 33333334444556888888


Q ss_pred             HHHHHHHHHcC
Q 037695          602 GKILGKVLRTA  612 (701)
Q Consensus       602 ~~~~~~~~~~~  612 (701)
                      .+-+.+.-+..
T Consensus       153 q~d~~~fYQ~D  163 (297)
T COG4785         153 QDDLLAFYQDD  163 (297)
T ss_pred             HHHHHHHHhcC
Confidence            77776665544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.33  E-value=27  Score=38.63  Aligned_cols=173  Identities=14%  Similarity=0.139  Sum_probs=87.6

Q ss_pred             HHHHHHHHHH-HcCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCChH
Q 037695          178 AFSYLMVAYS-RAGKLRNAMYVLSMMQKAAVAPNLL-----ICNTAIHVLVVGNKLAKALRFLERMQLA----GITPNVL  247 (701)
Q Consensus       178 ~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~  247 (701)
                      ++-.+...+. ...+++.|...+++.....-.++..     +...++..+.+.+... |...+++..+.    +..+-..
T Consensus        61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~  139 (608)
T PF10345_consen   61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY  139 (608)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence            3444555544 4567777777777665332222221     2223445555555444 77777665432    2222233


Q ss_pred             HHHHH-HHHHHhcCChhHHHHHHHHchhCC---CCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCCCCCCCCcHH
Q 037695          248 TYNCL-IKGYCDLHRIKDAIKLIDEMPLKG---CSPDKVSYYTVMGYLCK--EKRIKEVRDLMEKMVNDSNLFHDQGRIE  321 (701)
Q Consensus       248 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~g~~~  321 (701)
                      .|..+ +..+...+++..|.+.++.+....   ..|-...+..++.+...  .+..+++.+.+..+..            
T Consensus       140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~------------  207 (608)
T PF10345_consen  140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA------------  207 (608)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH------------
Confidence            34444 333333478888888888776432   23334444445544443  3434445444444322            


Q ss_pred             HHHHHHHHH--HHcCCCcCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 037695          322 EAKELVNQM--SQMGCIPDVVTYTAVVNGFC--RVGELDQAKKMLQQMYH  367 (701)
Q Consensus       322 ~a~~~~~~~--~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~  367 (701)
                          .....  ......|-..+|..+++.++  ..|+++.+...++.+..
T Consensus       208 ----~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~  253 (608)
T PF10345_consen  208 ----QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ  253 (608)
T ss_pred             ----HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                11111  01112345667777777655  46777777777666653

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.29  E-value=0.58  Score=28.09  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=12.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      +..+...+...|++++|++.|+++++..|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            33444444444444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.18  E-value=20  Score=36.98  Aligned_cols=177  Identities=11%  Similarity=0.086  Sum_probs=100.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695          476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV  555 (701)
Q Consensus       476 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  555 (701)
                      +.|....-+++..+..+-++.-...+..+|...|  .+...|..++++|... ..+.-..+++++.+..+ .|.+.-..|
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL  138 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL  138 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence            3455556677777777777777777777777743  4666777777777777 55666777777777542 233334444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTA-SKADASTCHVLVESY  627 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~  627 (701)
                      +.-|-+ ++...+..+|.++..+...       ...|..+....  -.+.+.-..+..++.... ...-...+.-+-.-|
T Consensus       139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            444444 7777777777777655321       12333333221  234555555555554332 122223333344456


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695          628 LNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE  660 (701)
Q Consensus       628 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  660 (701)
                      ....++.+|+.++..+++.+-+ |......++.
T Consensus       216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~  247 (711)
T COG1747         216 SENENWTEAIRILKHILEHDEK-DVWARKEIIE  247 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence            6666777777777766664433 3333333333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.10  E-value=2.6  Score=40.32  Aligned_cols=61  Identities=16%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  577 (701)
                      ++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            44444555555555555555555555443 33444555555555555555555555554443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.90  E-value=30  Score=38.49  Aligned_cols=221  Identities=15%  Similarity=0.072  Sum_probs=120.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 037695          454 LCREGKMDGAKKFMQECLNKGCAVNV-------VNFTSLIR-GFCQKGDLEEALSLLDDMYLC----KKDPDTVTYTTII  521 (701)
Q Consensus       454 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li  521 (701)
                      .....++.+|..+..++...-..|+.       ..|+.+-. .....|+++.|.++.+.....    -..+..+.+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34567888888888777554222221       12333322 234578889998888776642    1234456677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHH--HHHHHhcCCHH--HHHHHHHHHHhc----CCC----hhHHH
Q 037695          522 DALSKNGRVEEATELMMKMLSKGLVPTVVT---YRTV--IHRYCQVGRVE--DLLKLLEKMLSK----QKC----RTAYN  586 (701)
Q Consensus       522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l--~~~~~~~g~~~--~A~~~~~~~~~~----~p~----~~~~~  586 (701)
                      .+..-.|++++|..+..+..+..-.-+...   |..+  ...+..+|+..  +.+..|......    .|.    ..+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            888888999999888776655321222222   2222  23355667433  333333333222    222    23444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CH--hhHH
Q 037695          587 QVIENLCSFGYLEEAGKILGKVLRT----ASKADASTC--HVLVESYLNKGIPLLAYKVACRMFNRNLIP--DL--KLCK  656 (701)
Q Consensus       587 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~--~~~~  656 (701)
                      .+.+++.+   ++.+..-.....+.    .+.|-....  ..|+..+...|++++|.....++......+  .+  ....
T Consensus       585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~  661 (894)
T COG2909         585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA  661 (894)
T ss_pred             HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            55555554   33333333332222    222222222  367788889999999999888887743332  22  2222


Q ss_pred             HHHH--HHHhcCCHHHHHHHHHH
Q 037695          657 KVSE--RLILEGKSEEADTLMLR  677 (701)
Q Consensus       657 ~l~~--~~~~~g~~~~A~~~~~~  677 (701)
                      ..+.  .....|+..+|..+..+
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHh
Confidence            2222  22357888888888766

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.33  E-value=12  Score=32.84  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=10.1

Q ss_pred             hCCCCCChhhHHHHHHHHHhcCC
Q 037695          402 EEWWTPNAITYSVVMHGLRREGK  424 (701)
Q Consensus       402 ~~~~~~~~~~~~~ll~~~~~~g~  424 (701)
                      +.+++|+...+..++..+.+.|+
T Consensus        22 ~~~i~~~~~L~~lli~lLi~~~~   44 (167)
T PF07035_consen   22 QHNIPVQHELYELLIDLLIRNGQ   44 (167)
T ss_pred             HcCCCCCHHHHHHHHHHHHHcCC
Confidence            33444444444444444444444

>PRK09687 putative lyase; Provisional

Probab=90.20  E-value=19  Score=35.02  Aligned_cols=124  Identities=10%  Similarity=-0.015  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG-YLEEAGKILGKVLRTASKADASTCHVLVES  626 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  626 (701)
                      +..+-...+.++.+.++ ++++..+-.+++ +++..+-...+.++...+ ....+...+..++.   .++..+-...+.+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a  215 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLK-DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG  215 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence            44444455555555554 345555555543 233333333334444332 13344444444442   3455555555566


Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          627 YLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       627 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      +.+.|+ ..|+..+-+.++.+   +  .....+.++...|.. +|+..+.++.+..+
T Consensus       216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~  265 (280)
T PRK09687        216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD  265 (280)
T ss_pred             HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence            666655 34555555555421   1  223455566666663 56666666665443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.85  E-value=5.9  Score=35.39  Aligned_cols=62  Identities=23%  Similarity=0.187  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  577 (701)
                      .+..+...|++.|+.+.|.+.|.++.+....+.  ...+..+++.....+++..+...+.++..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344555555666666666666665555432222  22344455555555666655555555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.74  E-value=7.7  Score=30.35  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695          532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN  591 (701)
Q Consensus       532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~  591 (701)
                      +..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+..+-.+ ...|..++.-
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE   88 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE   88 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence            56677777888888999999999999999999999999999988776544 3366666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.65  E-value=5.9  Score=37.95  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=57.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695          439 GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKG---CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV  515 (701)
Q Consensus       439 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  515 (701)
                      |.+....+...++..-....+++.++.++-++....   ..++...+ +++..+. .-+.++++.++..=++.|+-||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            334444445555555555566667766666655431   11111111 1222222 234566777776666777777777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSK  543 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~  543 (701)
                      +++.+|+.+.+.+++.+|..+...|+.+
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            7777777777777777777766666654

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=89.13  E-value=19  Score=34.46  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=79.9

Q ss_pred             CcHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cC-ChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 037695          156 LCQGAKRVLRLMAR-RGIECRPEAFSYLMVAYSR-AG-KLRNAMYVLSMMQ-KAAVAPNLLICNTAIHVLVVGNKLAKAL  231 (701)
Q Consensus       156 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A~  231 (701)
                      ...+|+.+|+..-- ..+-.|+.+...+++.... .+ ....-.++.+-+. ..+-.++..+...++..++..+++..-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            34455555552211 2234566666666666654 22 2222233333333 2234667777777888888888888877


Q ss_pred             HHHHHHHhC-CCCCChHHHHHHHHHHHhcCChhHHHHHHHH-----chhCCCCCCHHHHHHHHHHH
Q 037695          232 RFLERMQLA-GITPNVLTYNCLIKGYCDLHRIKDAIKLIDE-----MPLKGCSPDKVSYYTVMGYL  291 (701)
Q Consensus       232 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~pd~~~~~~ll~~~  291 (701)
                      ++++..... +...|...|..+|+.....|+..-..++.++     ++..|+..+...-..+-..+
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            777776544 4455677788888888888887777777665     23445555555554444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.87  E-value=12  Score=33.47  Aligned_cols=94  Identities=17%  Similarity=0.119  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCH----h
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNR---NLIPDL----K  653 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~----~  653 (701)
                      ..+..++..|++.|+.++|.+.|.++.+....+.  ...+..++......|++..+...+.++...   +-.++.    .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3455556666666666666666666554432222  223445555566666666655555554441   111111    2


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          654 LCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       654 ~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      +|..+  .++..+++.+|-+.|-..
T Consensus       117 ~~~gL--~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGL--ANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHHHhchHHHHHHHHHcc
Confidence            22222  334567777777777544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.87  E-value=9.8  Score=33.51  Aligned_cols=25  Identities=12%  Similarity=0.024  Sum_probs=9.7

Q ss_pred             HHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695          569 LKLLEKMLSKQKC-RTAYNQVIENLC  593 (701)
Q Consensus       569 ~~~~~~~~~~~p~-~~~~~~l~~~~~  593 (701)
                      +.=|++++..+|+ ..++..++.+|.
T Consensus        55 isK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen   55 ISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            3333333444444 344444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.45  E-value=17  Score=31.95  Aligned_cols=100  Identities=21%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          501 LLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       501 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      .++.+.+.++.|+...+..+++.+.+.|++....    .++..++-+|.......+-.+  .+....+.++--.|..+- 
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL-   88 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL-   88 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence            3344445556666667777777777666654333    333444445544433333222  223333333333333321 


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          581 CRTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                       ...+..++..+...|++-+|.++..+.
T Consensus        89 -~~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   89 -GTAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             -hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence             013445556666666666666666553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.32  E-value=15  Score=31.26  Aligned_cols=51  Identities=18%  Similarity=0.105  Sum_probs=30.6

Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      ..++.+++..+++.+.-..|. +..-..-+..+...|++.+|.++|..+.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            356666666666666666665 333333455556666677777766666553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=88.25  E-value=2.9  Score=43.43  Aligned_cols=98  Identities=15%  Similarity=0.068  Sum_probs=47.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037695          595 FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTL  674 (701)
Q Consensus       595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  674 (701)
                      .|+...|.+.+..+....+.-.-+....|+....+.|-...|-.++.+.+..+ ...+-++..++.++....+.+.|++.
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence            35555555555555443332223333444455555555555555554444422 11223344445555555555555555


Q ss_pred             HHHHHHcCCCCCchHHHHh
Q 037695          675 MLRFVERGHIQPKSEEHLQ  693 (701)
Q Consensus       675 ~~~~~~~~~~~~~~~~~l~  693 (701)
                      |+.+++..++.|.+...|.
T Consensus       699 ~~~a~~~~~~~~~~~~~l~  717 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLK  717 (886)
T ss_pred             HHHHHhcCCCChhhHHHHH
Confidence            5555555555555555443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.20  E-value=27  Score=34.19  Aligned_cols=136  Identities=13%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC---CcC
Q 037695          262 IKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC---IPD  338 (701)
Q Consensus       262 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~---~p~  338 (701)
                      +++.+.+++.|.+.|+.-+..+|-+..-.+.. .+-+...                .....|..+++.|++...   .++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~----------------~~~~ra~~iy~~mKk~H~fLTs~~  140 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYD----------------EIIQRAKEIYKEMKKKHPFLTSPE  140 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHH----------------HHHHHHHHHHHHHHHhCccccCcc
Confidence            34567788899999998888777664433332 1111111                223566677777777632   244


Q ss_pred             HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChh
Q 037695          339 VVTYTAVVNGFCRVGE----LDQAKKMLQQMYHHGCKPNTV--SYTAFLNGLCHNGK--SLEAREMINTSEEEWWTPNAI  410 (701)
Q Consensus       339 ~~~~~~li~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~  410 (701)
                      ...+..++..  ...+    .+.++.+|+.+.+.|...+..  ..+.++..+.....  ...+..+++.+.+.++++...
T Consensus       141 D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~  218 (297)
T PF13170_consen  141 DYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM  218 (297)
T ss_pred             chhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence            4556666543  3333    356778888888877665432  22333322221111  346677777777777777766


Q ss_pred             hHHHHH
Q 037695          411 TYSVVM  416 (701)
Q Consensus       411 ~~~~ll  416 (701)
                      .|..+.
T Consensus       219 ~yp~lG  224 (297)
T PF13170_consen  219 HYPTLG  224 (297)
T ss_pred             cccHHH
Confidence            665443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.13  E-value=1.1  Score=26.55  Aligned_cols=26  Identities=8%  Similarity=0.461  Sum_probs=13.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      +..++.+.|++++|.+.|++++...|
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            44445555555555555555555544

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.88  E-value=6.4  Score=30.43  Aligned_cols=62  Identities=15%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIE  590 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~  590 (701)
                      +.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+....+-. ....|..++.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence            3445667777777778888888888889999999999999999887775433 3445555443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=86.87  E-value=51  Score=36.08  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 037695          141 PIVYYMMLEILSKTKLCQGAKRVLRLM  167 (701)
Q Consensus       141 ~~~~~~l~~~~~~~~~~~~a~~~~~~m  167 (701)
                      +.-|+ .+..+.-.|.++.|.++++..
T Consensus       149 p~FW~-~v~~lvlrG~~~~a~~lL~~~  174 (566)
T PF07575_consen  149 PDFWD-YVQRLVLRGLFDQARQLLRLH  174 (566)
T ss_dssp             HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred             hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence            55565 677777778888888887433

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=86.85  E-value=5.6  Score=38.48  Aligned_cols=95  Identities=14%  Similarity=0.015  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVS  659 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~  659 (701)
                      .|.-=+.-|.+..++..|...|.+.+...+   ..+.+.|+.-..+-...|++..|+.-..+++.  +.|+. ..|..-+
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence            444456677788888888888888776643   33456677777777777888888888888887  56654 6666667


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 037695          660 ERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       660 ~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      .++....++.+|..+.+...+
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence            778888887777777665533

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.76  E-value=1.3  Score=26.50  Aligned_cols=30  Identities=17%  Similarity=0.039  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          654 LCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ++..++.+|...|++++|.+.|+++++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455667777777777777777777766543

...

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=86.57  E-value=1e+02  Score=38.89  Aligned_cols=152  Identities=10%  Similarity=0.112  Sum_probs=94.4

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          110 QICAVLRSQADERVALQFFYWADRQWRYR--HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYS  187 (701)
Q Consensus       110 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  187 (701)
                      .+.++-.+++.+..|+-.++.. +....+  .....|..+...|+..++++...-+...-..     ++..+ .-|-...
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHE 1460 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHH
Confidence            3444445567777777766642 111111  1122344455599999999988888764221     22233 3344556


Q ss_pred             HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHH-HHHHHhcCChhHHH
Q 037695          188 RAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCL-IKGYCDLHRIKDAI  266 (701)
Q Consensus       188 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~  266 (701)
                      ..|+|..|...|+.+.+.+ ++....++.++......|.++.++-..+-.... ..+....++.+ +.+--+.++++...
T Consensus      1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred             hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence            7899999999999999876 555778888888888888888888766665543 23333333332 34446777777777


Q ss_pred             HHHH
Q 037695          267 KLID  270 (701)
Q Consensus       267 ~~~~  270 (701)
                      ..+.
T Consensus      1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred             hhhh
Confidence            6655

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.52  E-value=0.12  Score=44.54  Aligned_cols=83  Identities=13%  Similarity=0.127  Sum_probs=40.5

Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695          218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI  297 (701)
Q Consensus       218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~  297 (701)
                      +..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++...       ......++..|.+.|.+
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~   86 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY   86 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence            44444455555555555555544434445555666666666655555555554211       12223344444555555


Q ss_pred             hHHHHHHHHH
Q 037695          298 KEVRDLMEKM  307 (701)
Q Consensus       298 ~~a~~~~~~~  307 (701)
                      +++.-++.++
T Consensus        87 ~~a~~Ly~~~   96 (143)
T PF00637_consen   87 EEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHc
Confidence            5555555443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.51  E-value=3.7  Score=39.22  Aligned_cols=100  Identities=9%  Similarity=0.121  Sum_probs=54.8

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 037695          136 RYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG-----IECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPN  210 (701)
Q Consensus       136 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  210 (701)
                      |.+++..+-..++.+.....+++.+...+-.+....     ...+..+|..++.    .-+.++++.++..-++.|+.||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence            334444455555555555556666665554444321     0012223332222    2245566666666666777777


Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 037695          211 LLICNTAIHVLVVGNKLAKALRFLERMQL  239 (701)
Q Consensus       211 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~  239 (701)
                      .++++.+|..+.+.+++..|..+.-.|..
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            77777777777777777666666555543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.24  E-value=59  Score=35.97  Aligned_cols=190  Identities=16%  Similarity=0.097  Sum_probs=93.1

Q ss_pred             HhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHH--HHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 037695          490 CQKGDLEEALSLLDDMYLCKK-DPD-----TVTYTT--IIDALSKNGRVEEATELMM--------KMLSKGLVPTVVTYR  553 (701)
Q Consensus       490 ~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~~--li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~  553 (701)
                      +-.+++..|...+..+..... .|+     ...+..  ..-.+...|+.+.|...|.        .....+...+..++.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila  451 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA  451 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence            346889999999998875321 121     122222  2233446799999999997        444444333333332


Q ss_pred             HH--HHHHHhcC--CHHH--HHHHHHHHHhc---CCC--hhHHH-HHHHHHHhc--CCHHHHHHHHHHHHHcC---CC--
Q 037695          554 TV--IHRYCQVG--RVED--LLKLLEKMLSK---QKC--RTAYN-QVIENLCSF--GYLEEAGKILGKVLRTA---SK--  614 (701)
Q Consensus       554 ~l--~~~~~~~g--~~~~--A~~~~~~~~~~---~p~--~~~~~-~l~~~~~~~--g~~~~A~~~~~~~~~~~---~~--  614 (701)
                      .+  +..+...+  ...+  +.++++.+...   .|+  ..++. .++.++...  -...++...+.+.++.-   ..  
T Consensus       452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~  531 (608)
T PF10345_consen  452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS  531 (608)
T ss_pred             HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence            21  11122222  2222  55666555432   232  22333 333333321  22335555555443322   11  


Q ss_pred             -CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCH--hhHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 037695          615 -ADASTCHVLVESYLNKGIPLLAYKVACRMFNRN-LIPDL--KLCKK-----VSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       615 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~--~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                       .-..+++.+...+. .|+..+..+......... ..||.  ..|..     +...+-..|+.++|.....+...
T Consensus       532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence             11233444555555 677766555544443311 12332  34432     33346678999999988876643

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.03  E-value=60  Score=35.85  Aligned_cols=41  Identities=15%  Similarity=0.062  Sum_probs=23.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 037695          252 LIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCK  293 (701)
Q Consensus       252 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~  293 (701)
                      +|-.|.++|++++|.++....... .......+...+..|+.
T Consensus       117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~  157 (613)
T PF04097_consen  117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS  157 (613)
T ss_dssp             HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence            445667888888888887555432 33344555556666554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.81  E-value=2  Score=27.17  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          653 KLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      .++..++..|...|++++|..+++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45667777777778888888777777653

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.22  E-value=48  Score=34.01  Aligned_cols=117  Identities=12%  Similarity=0.153  Sum_probs=57.6

Q ss_pred             HcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHH
Q 037695          188 RAGKLRNAM-YVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAI  266 (701)
Q Consensus       188 ~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  266 (701)
                      ..|+...|- +++..+......|+..  ......+...|.++.+...+...... +.....+..++++...+.|+++.|.
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence            345554443 3344443332233332  22233445567777777666555432 2334456666677777777777777


Q ss_pred             HHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037695          267 KLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMV  308 (701)
Q Consensus       267 ~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~  308 (701)
                      .+-..|....+. +...........-..|-++++...++++.
T Consensus       378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~  418 (831)
T PRK15180        378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL  418 (831)
T ss_pred             HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence            776666655443 22222222222223344555555555543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=85.19  E-value=14  Score=30.77  Aligned_cols=66  Identities=11%  Similarity=0.085  Sum_probs=31.4

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh-cCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          546 VPTVVTYRTVIHRYCQVGR---VEDLLKLLEKMLS-KQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       546 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      .++..+-..+..++.++.+   +.+.+.+++.+.+ ..|.  ..-...|+-++.+.++++++.++++.+++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3444444455555554433   3344555555553 2333  223334445555555555555555555543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.99  E-value=38  Score=34.88  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc-CCC----h-----hHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH--
Q 037695          557 HRYCQVGRVEDLLKLLEKMLSK-QKC----R-----TAYNQVIENLCSFGYLEEAGKILGKVLR-------TASKADA--  617 (701)
Q Consensus       557 ~~~~~~g~~~~A~~~~~~~~~~-~p~----~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--  617 (701)
                      ..+.-.|++.+|.+++-..--. .|-    +     ..+|.|+-+..+.|.+..+..+|.++++       .|.+|.+  
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            4566789999999887654221 111    1     1347777778889999999999999885       2433322  


Q ss_pred             --------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037695          618 --------STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE  665 (701)
Q Consensus       618 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  665 (701)
                              .+....+-.|...|++..|.+.|.+...- +.-++..|..++.+|+..
T Consensus       328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence                    12334566788999999999999888772 233667888888888753

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.93  E-value=18  Score=33.44  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhcCCh-------hhHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          620 CHVLVESYLNKGIP-------LLAYKVACRMFNRNLIP-----DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       620 ~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      +-.++|.|...|+.       ..|++.|.++....-.|     ...+...++....+.|++++|..+|.+++..+..+.
T Consensus       121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            33444555555542       34555666665533222     234555677788889999999999999998876555

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.39  E-value=9  Score=40.21  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=16.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          338 DVVTYTAVVNGFCRVGELDQAKKMLQQMY  366 (701)
Q Consensus       338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~  366 (701)
                      +..-|..|.++....+++..|.+.|....
T Consensus       665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~  693 (794)
T KOG0276|consen  665 SEVKWRQLGDAALSAGELPLASECFLRAR  693 (794)
T ss_pred             chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence            33445555565566666666655555443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=84.38  E-value=7.8  Score=29.95  Aligned_cols=46  Identities=13%  Similarity=0.188  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          427 EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLN  472 (701)
Q Consensus       427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  472 (701)
                      ++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444445555556666666666666666666666666666665553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.38  E-value=2  Score=25.64  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~  577 (701)
                      |..+...|...|++++|.+.|++.++
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33344444444444444444444443

...

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=84.18  E-value=73  Score=35.22  Aligned_cols=87  Identities=11%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCChhhHHHHHHHHHh---c
Q 037695          347 NGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEA-REMINTSEEEWWTPNAITYSVVMHGLRR---E  422 (701)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~  422 (701)
                      ..+.-.|+++.|.+.+-.  ..+...+.+.+...+.-|.-.+-.... ..++..-..   .|....+..||..|.+   .
T Consensus       266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~---~~~~ln~arLI~~Y~~~F~~  340 (613)
T PF04097_consen  266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPG---DPPPLNFARLIGQYTRSFEI  340 (613)
T ss_dssp             HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred             HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCC---CCCCcCHHHHHHHHHHHHhc
Confidence            445667888888887766  222234555554444433221111111 111111111   1122556777777766   3


Q ss_pred             CCHHHHHHHHHHHHHc
Q 037695          423 GKLSEACDVVREMVKK  438 (701)
Q Consensus       423 g~~~~A~~~~~~m~~~  438 (701)
                      .+..+|++.+-.+...
T Consensus       341 td~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  341 TDPREALQYLYLICLF  356 (613)
T ss_dssp             T-HHHHHHHHHGGGGS
T ss_pred             cCHHHHHHHHHHHHHc
Confidence            4666677666655443

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=83.98  E-value=17  Score=28.49  Aligned_cols=45  Identities=22%  Similarity=0.200  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 037695          194 NAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQ  238 (701)
Q Consensus       194 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~  238 (701)
                      +..+-++.+....+-|++....+.+++|.+.+++..|.++|+-++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444455555555555555555555555555555554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=83.92  E-value=42  Score=32.26  Aligned_cols=82  Identities=22%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695          581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE  660 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  660 (701)
                      ++.....++..|.+.|++.+|...|-..    ..++...+..++......|...++              +.-+-.. +-
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra-VL  149 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA-VL  149 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-HH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-HH
Confidence            3677888899999999999988777431    122233322244433344433322              1122222 22


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc
Q 037695          661 RLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       661 ~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      .|+-.|+...|...+....++
T Consensus       150 ~yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  150 QYLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             HHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHH
Confidence            456678888888888777766

; PDB: 3LKU_E 2WPV_G.

>PRK09687 putative lyase; Provisional

Probab=83.75  E-value=45  Score=32.48  Aligned_cols=137  Identities=18%  Similarity=0.112  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695          512 PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG-RVEDLLKLLEKMLSKQKCRTAYNQVIE  590 (701)
Q Consensus       512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~  590 (701)
                      ++..+-...+.++.+.++ ..++..+-.+.+.   ++...-...+.++.+.+ .-..+...+..++. +++..+-...+.
T Consensus       140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-D~~~~VR~~A~~  214 (280)
T PRK09687        140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-DKNEEIRIEAII  214 (280)
T ss_pred             CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-CCChHHHHHHHH
Confidence            344555555666666655 3455555555542   34444444444554432 13355555555553 445555566666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695          591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL  662 (701)
Q Consensus       591 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  662 (701)
                      ++.+.|+ ..|+..+-+.++.+   +  .....+.++...|.. +|+..+.++.+  -.||..+-....+++
T Consensus       215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~  277 (280)
T PRK09687        215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL  277 (280)
T ss_pred             HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence            7777666 45665555555432   2  223566667777764 57777777776  333554444444443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.74  E-value=77  Score=36.06  Aligned_cols=37  Identities=8%  Similarity=0.137  Sum_probs=18.6

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695          489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS  525 (701)
Q Consensus       489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~  525 (701)
                      |......+-++..++.+....-.++....+.++.-|+
T Consensus       601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~  637 (877)
T KOG2063|consen  601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL  637 (877)
T ss_pred             HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence            3444455555555555554333444455555555444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.63  E-value=8.7  Score=34.82  Aligned_cols=56  Identities=20%  Similarity=0.189  Sum_probs=25.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          485 LIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKML  541 (701)
Q Consensus       485 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  541 (701)
                      .++.+.+.+.+.+|+...++-.+.. +-|..+-..+++.||-.|++++|..-++-.-
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a   62 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA   62 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence            3444444555555555554444432 2233334444455555555555554444433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.60  E-value=12  Score=33.71  Aligned_cols=72  Identities=11%  Similarity=0.052  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          496 EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK---GLVPTVVTYRTVIHRYCQVGRVEDL  568 (701)
Q Consensus       496 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A  568 (701)
                      +.|.+.|-.+...+.--++.....|...| ...+.++++.++.+..+.   +-.+|+..+..|+..+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            55666666665554333444444444333 355666666666666553   2245566666666666666666655

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.58  E-value=26  Score=29.83  Aligned_cols=53  Identities=11%  Similarity=0.091  Sum_probs=25.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695          527 NGRVEEATELMMKMLSKGLVPTVV-TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC  581 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  581 (701)
                      .++++++..+++.|.-.  .|+.. .-..-...+...|++++|.++|++.....+.
T Consensus        23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~   76 (153)
T TIGR02561        23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA   76 (153)
T ss_pred             cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence            45555555555555542  22211 1111223344556666666666665554443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.51  E-value=73  Score=34.72  Aligned_cols=178  Identities=14%  Similarity=0.077  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 037695          355 LDQAKKMLQQMYHHGCKPNTVSYTAFL----NG-LCHNGKSLEAREMINTSEE-------EWWTPNAITYSVVMHGLRRE  422 (701)
Q Consensus       355 ~~~a~~~~~~~~~~~~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~  422 (701)
                      ...+.++++...+.|   +...-..+.    .+ +....+.+.|..+|..+.+       .+   .......+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            567778888877765   222222222    22 4456788888888888766       33   222344455555543


Q ss_pred             C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 037695          423 G-----KLSEACDVVREMVKKGFFPTPVEINLLIQSLCR-EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFC----QK  492 (701)
Q Consensus       423 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~  492 (701)
                      .     +...|+.++...-..| .|+.......+..... ..+...|.++|......|..   ..+-.+..+|.    ..
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence            2     4455677776666665 3333332222221111 23455666666666665532   22222222221    12


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695          493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG  544 (701)
Q Consensus       493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  544 (701)
                      .+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            34556666666665554 2221111112222222 55555555555554443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=82.67  E-value=3  Score=26.28  Aligned_cols=28  Identities=18%  Similarity=0.151  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          618 STCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+++.|+..|...|++++|..++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4567777777777777777777777665

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=82.62  E-value=17  Score=30.28  Aligned_cols=67  Identities=9%  Similarity=-0.011  Sum_probs=36.3

Q ss_pred             CCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          579 QKCRTAYNQVIENLCSFG---YLEEAGKILGKVLR-TASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       579 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .++..+...+++++.+..   +..+.+.+++++.+ ..+.........|.-++.+.|++++++.+...+++
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            344555556666666543   34555666666664 22222233334455566666666666666666665

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.01  E-value=9.7  Score=34.54  Aligned_cols=127  Identities=16%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS--KADASTCHVLVESY  627 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~  627 (701)
                      |.+..+..+.+.+...+|+...+.-++.+|. ...-..+...||-.|++++|..-++-+-+..+  .+....|..++.+-
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e   82 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE   82 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence            3455667788899999999999999888888 55666789999999999999988887765533  23345566665432


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCC------CHhhHHHHHHHHH-hc-CCHHHHHHHHHHHHHcCCCCCc
Q 037695          628 LNKGIPLLAYKVACRMFNRNLIP------DLKLCKKVSERLI-LE-GKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       628 ~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~-~~-g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      ..          =.....-+..|      .......+..++. +. |.-+.+..+-+.+.+.++.++-
T Consensus        83 a~----------R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG  140 (273)
T COG4455          83 AA----------RNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG  140 (273)
T ss_pred             HH----------HHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence            11          11122222333      2322333333332 33 4555567777888888875543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=81.93  E-value=61  Score=32.72  Aligned_cols=63  Identities=16%  Similarity=0.150  Sum_probs=27.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          410 ITYSVVMHGLRREGKLSEACDVVREMVKKGFFP---TPVEINLLIQSLCREGKMDGAKKFMQECLN  472 (701)
Q Consensus       410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  472 (701)
                      .+|..+...+.+.|.++.|...+..+...+...   .+.....-+..+...|+...|...++....
T Consensus       147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455555555555555555555554432111   122222333334444444555544444443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=81.82  E-value=70  Score=33.33  Aligned_cols=179  Identities=16%  Similarity=0.137  Sum_probs=128.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695          440 FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT  519 (701)
Q Consensus       440 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  519 (701)
                      .+.|.....+++..+...-.+.-++.+..+|+..|  -+-..|..++.+|... ..+.-..+|+++.+..+ .|.+.-..
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re  137 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE  137 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence            35577788889999999999999999999998864  4677888999999998 56888899998887543 23333444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPT-----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIEN  591 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~  591 (701)
                      |..-|-+ ++...+..+|.+....-++..     ...|..+....  ..+.+..+.+..++.+....   ...+..+-.-
T Consensus       138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~  214 (711)
T COG1747         138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK  214 (711)
T ss_pred             HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            5555544 888999999998887633311     22455444322  45778888888887766443   3455666677


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVES  626 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  626 (701)
                      |....++.+|++++..+++..- -|...-..++..
T Consensus       215 Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~  248 (711)
T COG1747         215 YSENENWTEAIRILKHILEHDE-KDVWARKEIIEN  248 (711)
T ss_pred             hccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence            8888999999999999998763 355555555543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.54  E-value=14  Score=33.27  Aligned_cols=76  Identities=12%  Similarity=0.069  Sum_probs=38.7

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChh
Q 037695          560 CQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS---KADASTCHVLVESYLNKGIPL  634 (701)
Q Consensus       560 ~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~  634 (701)
                      .+.|+- .|.+.|-.+...+.-  +.....|+..|. ..+.++++.++-++++...   .+|+..+.+|+..|.+.|+++
T Consensus       118 sr~~d~-~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGDQ-EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCcH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            344443 445444444433211  333444444443 4566666666666655421   445666666666666666666


Q ss_pred             hHH
Q 037695          635 LAY  637 (701)
Q Consensus       635 ~A~  637 (701)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.87  E-value=54  Score=31.44  Aligned_cols=71  Identities=17%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhhHH
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-----RNLIPDLKLCK  656 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  656 (701)
                      +......|..+|.+.+|.++.++++..+ +.+...+..|+..+...|+--.|.+.++++-+     .|+..+..+++
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee  357 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE  357 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence            3445566777777777777777777665 45667777777777777877777776666543     35554444433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=80.54  E-value=30  Score=32.05  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=66.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 037695          489 FCQKGDLEEALSLLDDMYLCKKDPDTVT-YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVV-TYRTVIHRYCQVGRVE  566 (701)
Q Consensus       489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~  566 (701)
                      |....++..|+.-|.+.+.  +.|+..+ |+.-+-++.+..+++.+..-..+.++  +.|+.. ....+..+......++
T Consensus        20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence            4445567777776666655  4666633 45556667777777777776666665  345533 3334455566677777


Q ss_pred             HHHHHHHHHHhc---CC-C--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          567 DLLKLLEKMLSK---QK-C--RTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       567 ~A~~~~~~~~~~---~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      +|+..+.++...   .| +  .++...|..+-...=...+..++.++.
T Consensus        96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~  143 (284)
T KOG4642|consen   96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL  143 (284)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence            777777776433   11 1  344444444443333445555555543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.20  E-value=39  Score=35.81  Aligned_cols=129  Identities=16%  Similarity=0.069  Sum_probs=87.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 037695          110 QICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA  189 (701)
Q Consensus       110 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  189 (701)
                      .+...|.+++-.+.||++          .+|+.-   -.....+.|+++.|.++..+.      .+..-|..|..+....
T Consensus       619 ~va~Fle~~g~~e~AL~~----------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~  679 (794)
T KOG0276|consen  619 KVAHFLESQGMKEQALEL----------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSA  679 (794)
T ss_pred             hHHhHhhhccchHhhhhc----------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhc
Confidence            466777778877788776          222211   123455778888888776544      3666788899998899


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 037695          190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLI  269 (701)
Q Consensus       190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  269 (701)
                      +++..|.++|.....         |..|+-.+...|+.+....+-....+.|. .     |...-+|...|+++++.+++
T Consensus       680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lL  744 (794)
T KOG0276|consen  680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELL  744 (794)
T ss_pred             ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHH
Confidence            999999988887653         55677777777877766666666666552 2     22334566788888888887


Q ss_pred             HHc
Q 037695          270 DEM  272 (701)
Q Consensus       270 ~~m  272 (701)
                      ..-
T Consensus       745 i~t  747 (794)
T KOG0276|consen  745 IST  747 (794)
T ss_pred             Hhc
Confidence            654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	701
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.8 bits (188), Expect = 1e-14
 Identities = 60/478 (12%), Positives = 131/478 (27%), Gaps = 147/478 (30%)

Query: 293 KEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYT--------- 343
                K+V+D+ + +++           EE   ++          D V+ T         
Sbjct: 31  DNFDCKDVQDMPKSILSK----------EEIDHIIMS-------KDAVSGTLRLFWTLLS 73

Query: 344 ---AVVNGFCRVGELDQAK-KMLQQMYHHGCK---PNTVSYTAFLNGLCHNGKSLEAREM 396
               +V  F  V E+ +   K L        +     T  Y    + L ++ +      +
Sbjct: 74  KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 397 INTSEEEWWT---------PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFP----- 442
             +  + +           P      V++ G+   GK   A DV      +         
Sbjct: 132 --SRLQPYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 443 -------TPVEINLLIQSLCREGKMDGAKKFMQECLN-KGCAVNVVNFTSLIRGFCQKGD 494
                  +P  +  ++Q L    ++D    +     +     + + +  + +R   +   
Sbjct: 187 LNLKNCNSPETVLEMLQKLLY--QID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 495 LEEALSLLDDMYLCKKDPDTVTY---------TT----IIDALSKNGRVEEATELMMKML 541
            E  L +L ++     +               TT    + D LS        T + +   
Sbjct: 243 YENCLLVLLNVQ----NAKAWNAFNLSCKILLTTRFKQVTDFLS----AATTTHISLDHH 294

Query: 542 SKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYL-EE 600
           S  L P                  +++  LL K L                C    L  E
Sbjct: 295 SMTLTP------------------DEVKSLLLKYLD---------------CRPQDLPRE 321

Query: 601 AGKI-------LGKVLRTA-------SKADASTCHVLVESYLNKGIP--LLAYKVACRMF 644
                      + + +R            +      ++ES LN   P           +F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 645 NRNL-IPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVFLNS 701
             +  IP       +   +  +    +   ++ +  +   +    E+  +   + + S
Sbjct: 382 PPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLV----EKQPKESTISIPS 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 2e-13
 Identities = 92/656 (14%), Positives = 175/656 (26%), Gaps = 209/656 (31%)

Query: 27  FDIF----AEEVEEGEDGSDSDDHFMVLDSFDKYRVNREEIRRVVLEEDEF---RHPLVR 79
           F        E V++  +     ++  ++         + E R+  +    +   R  L  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI------KTEQRQPSMMTRMYIEQRDRLYN 121

Query: 80  EVCRLIELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRH 139
           +  ++    +    +   +LR  L  L+P +                             
Sbjct: 122 DN-QVFAKYNVSRLQPYLKLRQALLELRPAKN---------------------------- 152

Query: 140 DPIVYYMMLEILSKTKLCQGA-KRVLRLMARRGIECRPEAFSYLM---VAYSRAGKLRNA 195
             ++   +L          G+ K  + L       C        M   + +       + 
Sbjct: 153 --VLIDGVL----------GSGKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 196 MYVLSMMQK--AAVAPNLLI-CNTAIHVLVVGNKLAKALR-FLERMQLAGITPNVLTYNC 251
             VL M+QK    + PN     + + ++ +  + +   LR  L+              NC
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---------NC 246

Query: 252 LIKGYCDLHRIKDAIKLIDEMPLKGC-----SPDKVSYYTVMGYLCKEKRIKEVRDLMEK 306
           L+     L  +++A K  +   L  C     +  K     +         +      +  
Sbjct: 247 LL----VLLNVQNA-KAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 307 MVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL-DQAKKMLQQM 365
                         +E K L+ +                ++  CR  +L  +        
Sbjct: 301 --------------DEVKSLLLK---------------YLD--CRPQDLPREVLT----- 324

Query: 366 YHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKL 425
                 P  +S       +    +S+  R+ + T  + W   N    + ++       + 
Sbjct: 325 ----TNPRRLS-------II--AESI--RDGLATW-DNWKHVNCDKLTTII-------ES 361

Query: 426 SEAC---DVVREMVKK-GFFPTPVEINLLIQSLCR---EGKMDGAKKFMQECLNKGCAV- 477
           S         R+M  +   FP    I      L     +         + +         
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 478 NVVNFT----SLIRGFCQKGDLEEAL--SLLDDMY--LCKKDPDTVT--------YTTII 521
                T    S+      K + E AL  S++D  Y      D D +         Y+ I 
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 522 DALSKNGRVEEATELMMKML------------------SKGLVPTVV---TYRTVIHRYC 560
             L      E  T   M  L                  S  ++ T+     Y+  I    
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 561 QV--GRVEDLLKLLEK-----MLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGK 607
                 V  +L  L K     + SK     R A     E        EEA K + +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE-----AIFEEAHKQVQR 589

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 76.8 bits (187), Expect = 1e-14
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 4/156 (2%)

Query: 318 GRIEEAKELVNQMSQM---GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNT 374
            ++  A  L+           +  +  Y AV+ G+ R G   +   +L  +   G  P+ 
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200

Query: 375 VSYTAFLNGLCHNGKSLEA-REMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVR 433
           +SY A L  +    +        +    +E     A+  +V++    R   L     V  
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260

Query: 434 EMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQE 469
                   P PV  + L++ +  +       K    
Sbjct: 261 TFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 73.7 bits (179), Expect = 1e-13
 Identities = 38/322 (11%), Positives = 90/322 (27%), Gaps = 44/322 (13%)

Query: 86  ELRSAWSPKLEGELRNLLRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYY 145
                W+  LE + R     ++  +    +  Q+ E  AL                    
Sbjct: 21  VPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALT------------------- 61

Query: 146 MMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKA 205
             L++  +    Q A  +     +       E  + L+        L           +A
Sbjct: 62  RRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQA 121

Query: 206 AVAPNLLICNTAIHVLVVGNKLAKALRFLER---MQLAGITPNVLTYNCLIKGYCDLHRI 262
            ++             ++ ++L  A   L      +       +  YN ++ G+      
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181

Query: 263 KDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEE 322
           K+ + ++  +   G +PD +SY   +  + ++ +                          
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ----------------------DAGT 219

Query: 323 AKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLN 382
            +  + QMSQ G     +    +++   R   L    K+          P  V+ +  L 
Sbjct: 220 IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279

Query: 383 GLCHNGKSLEAREMINTSEEEW 404
            +      +   ++    +   
Sbjct: 280 DVYAKDGRVSYPKLHLPLKTLQ 301

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 69.1 bits (167), Expect = 3e-12
 Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 6/164 (3%)

Query: 442 PTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSL 501
           P   ++  L+Q    +  +D  +    +      +       +  +       L  A  L
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 502 LDDMYLCKKD---PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR 558
           L   +  ++         Y  ++   ++ G  +E   ++  +   GL P +++Y   +  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 559 YCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAG 602
               GR +     +E+ L +        Q +         + A 
Sbjct: 210 M---GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.0 bits (159), Expect = 3e-11
 Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 4/174 (2%)

Query: 406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKK 465
           +P     + ++     +  L        +  +         +    +      ++  A  
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 466 FMQECLN---KGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID 522
            +        K   + +  + +++ G+ ++G  +E + +L  +      PD ++Y   + 
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208

Query: 523 ALSKNGRVEEATE-LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKM 575
            + +  +     E  + +M  +GL    +    ++    +   ++ + K+    
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 49.0 bits (115), Expect = 5e-06
 Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 5/139 (3%)

Query: 498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557
           A  L D      + P       ++        ++       +     L            
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 558 RYCQVGRVEDLLKLLEKMLSKQKCRT-----AYNQVIENLCSFGYLEEAGKILGKVLRTA 612
                 ++     LL     +++ R       YN V+      G  +E   +L  V    
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195

Query: 613 SKADASTCHVLVESYLNKG 631
              D  +    ++    + 
Sbjct: 196 LTPDLLSYAAALQCMGRQD 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	701
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.85
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.85
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.84
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.6
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.58
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.56
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.51
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.45
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.4
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.36
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.3
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.26
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.24
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.22
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.18
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.15
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.07
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.02
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.01
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.01
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.99
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.98
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.97
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.89
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.86
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.85
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.83
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.82
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.81
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.79
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.72
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.69
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.67
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.66
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.65
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.62
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.57
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.55
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.54
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.51
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.47
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.46
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.44
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.43
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.41
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.4
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.36
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.36
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.29
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.27
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.2
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.14
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.11
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.94
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.93
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.9
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.87
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.85
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.82
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.8
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.77
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.71
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.64
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.62
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.55
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.31
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.25
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.14
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.02
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.99
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.91
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.88
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.81
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.74
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.59
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.22
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.14
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.08
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.94
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.66
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.56
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.32
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.99
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.93
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.84
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.41
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.98
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.86
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.78
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.78
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.72
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.31
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.25
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.65
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.14
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.29
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.27
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	91.09
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.68
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.3
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	89.58
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.57
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.51
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.87
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.71
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.19
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.17
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	85.16
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.25
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	83.69
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.84

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.7e-40  Score=362.95  Aligned_cols=498  Identities=11%  Similarity=0.006  Sum_probs=283.0

Q ss_pred             CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695          139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI  218 (701)
Q Consensus       139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll  218 (701)
                      +++..|+.++..+.+.|++++|..+|++|...  .|+..++..++.+|.+.|++++|..+|+.+...  +++..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~  157 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA  157 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence            45556666666666666666666666666542  345566666666666666666666666665432  45566666666


Q ss_pred             HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChh
Q 037695          219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIK  298 (701)
Q Consensus       219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~  298 (701)
                      .+|.+.|++++|..+|+++...    +..     ...+.+.+           -...|.+++..+|+.++.+|.+.|+++
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLL-----------MQDGGIKLEASMCYLRGQVYTNLSNFD  217 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTT----C--------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCc----ccc-----cccccccc-----------ccccccchhHHHHHHHHHHHHHcCCHH
Confidence            6666666666666666632111    000     00000000           001123344555666666666665555


Q ss_pred             HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHHHcCCCCCHH
Q 037695          299 EVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQA--KKM-LQQMYHHGCKPNTV  375 (701)
Q Consensus       299 ~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a--~~~-~~~~~~~~~~~~~~  375 (701)
                      +|.++|+.+...                       + +.+...+..+...+...+..+.+  ..+ +..+...+..+...
T Consensus       218 ~A~~~~~~~~~~-----------------------~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  273 (597)
T 2xpi_A          218 RAKECYKEALMV-----------------------D-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS  273 (597)
T ss_dssp             HHHHHHHHHHHH-----------------------C-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred             HHHHHHHHHHHh-----------------------C-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence            555555555431                       0 11222333333222222111111  111 22333333233344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          376 SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLC  455 (701)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  455 (701)
                      +|+.++..|.+.|++++|.++|+++.+.  +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.
T Consensus       274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  350 (597)
T 2xpi_A          274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH  350 (597)
T ss_dssp             HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence            4555555566666666666666665543  3556666666666666666666666666666553 334555666666666


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695          456 REGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATE  535 (701)
Q Consensus       456 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  535 (701)
                      +.|++++|..+++.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus       351 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  428 (597)
T 2xpi_A          351 ESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS  428 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            666666666666666544 24456666666666666666666666666665532 2345566666666666666666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 037695          536 LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT---  611 (701)
Q Consensus       536 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  611 (701)
                      +|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..|. ..++..++.+|.+.|++++|..+|+++++.   
T Consensus       429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  507 (597)
T 2xpi_A          429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK  507 (597)
T ss_dssp             HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence            666666653 445666666666666667777777777666666555 556666667777777777777777666655   


Q ss_pred             -CCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          612 -ASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       612 -~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                       +..|+  ..+|..++.+|.+.|++++|+..++++.+.+  | +..++..++.+|.+.|++++|.++|+++++..|..+.
T Consensus       508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  585 (597)
T 2xpi_A          508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM  585 (597)
T ss_dssp             SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence             33455  5667777777777777777777777776633  3 4566677777777777777777777777776665544


Q ss_pred             hHHHH
Q 037695          688 SEEHL  692 (701)
Q Consensus       688 ~~~~l  692 (701)
                      ....|
T Consensus       586 ~~~~l  590 (597)
T 2xpi_A          586 ASDLL  590 (597)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-39  Score=356.28  Aligned_cols=494  Identities=12%  Similarity=0.035  Sum_probs=397.6

Q ss_pred             HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695          112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK  191 (701)
Q Consensus       112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  191 (701)
                      ...+...|+++.|+.+|..+...   .|+..++..++.+|.+.|++++|..+|+.+...  ++++.+++.++.+|.+.|+
T Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~  165 (597)
T 2xpi_A           91 RHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYD  165 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhh
Confidence            34455679999999999988744   467789999999999999999999999988653  5799999999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 037695          192 LRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDE  271 (701)
Q Consensus       192 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  271 (701)
                      +++|..+|+++.     |+..    ....+.+.+.           ...+.+++..+|+.++.+|.+.|++++|.++|++
T Consensus       166 ~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  225 (597)
T 2xpi_A          166 WQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE  225 (597)
T ss_dssp             HHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999643     2110    0011111111           1234566788899999999999999999999999


Q ss_pred             chhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHH-HHHHHHcCCCcCHHHHHHHHHHHH
Q 037695          272 MPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKEL-VNQMSQMGCIPDVVTYTAVVNGFC  350 (701)
Q Consensus       272 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~li~~~~  350 (701)
                      |.+.+ +.+...+..+...+...+...  ...                   +..+ +..+...+..+...+|+.++..|.
T Consensus       226 ~~~~~-p~~~~~~~~l~~~~~~~~~~~--~~~-------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  283 (597)
T 2xpi_A          226 ALMVD-AKCYEAFDQLVSNHLLTADEE--WDL-------------------VLKLNYSTYSKEDAAFLRSLYMLKLNKTS  283 (597)
T ss_dssp             HHHHC-TTCHHHHHHHHHTTCSCHHHH--HHH-------------------HHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred             HHHhC-chhhHHHHHHHHhhcccchhH--HHH-------------------HHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence            88763 123444554443332221111  111                   1111 233333344455667788888999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037695          351 RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACD  430 (701)
Q Consensus       351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~  430 (701)
                      +.|++++|.++|+.+...  +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..
T Consensus       284 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  360 (597)
T 2xpi_A          284 HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYL  360 (597)
T ss_dssp             THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred             CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999998875  5789999999999999999999999999998765 4578889999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695          431 VVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK  510 (701)
Q Consensus       431 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~  510 (701)
                      +++.+.+.. +.+..++..++..|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+ 
T Consensus       361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  437 (597)
T 2xpi_A          361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-  437 (597)
T ss_dssp             HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            999998764 667889999999999999999999999999876 34578899999999999999999999999998864 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC--h
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------QKC--R  582 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~--~  582 (701)
                      +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.      .|.  .
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~  516 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA  516 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence            4578899999999999999999999999999864 567899999999999999999999999999887      555  5


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER  661 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~  661 (701)
                      .++..++.+|.+.|++++|..+++++++.+ +.+..+|..++.+|...|++++|.+.++++++  +.|+ ...+..++.+
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~  593 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRA  593 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence            789999999999999999999999999876 44889999999999999999999999999999  5554 4666666655


Q ss_pred             H
Q 037695          662 L  662 (701)
Q Consensus       662 ~  662 (701)
                      |
T Consensus       594 ~  594 (597)
T 2xpi_A          594 L  594 (597)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.7e-26  Score=239.27  Aligned_cols=379  Identities=11%  Similarity=0.029  Sum_probs=228.1

Q ss_pred             HHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHc
Q 037695          254 KGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQM  333 (701)
Q Consensus       254 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~  333 (701)
                      ..+.+.|++++|.+.+..+.... +.+...+..+...+...|++++|...++....                       .
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-----------------------~   62 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-----------------------Q   62 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------H
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------c
Confidence            34445555555555555554431 11233344444444455555444444444332                       1


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695          334 GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS  413 (701)
Q Consensus       334 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  413 (701)
                       .+.+..+|..+..+|.+.|++++|+..|+++.... +.+..+|..+..++...|++++|...|.++.+.. +.+...+.
T Consensus        63 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  139 (388)
T 1w3b_A           63 -NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRS  139 (388)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHH
T ss_pred             -CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence             13345556666666666666666666666665542 2234456666666666666666666666665542 22333445


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          414 VVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG  493 (701)
Q Consensus       414 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  493 (701)
                      .+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...|..+...+...|
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~  217 (388)
T 1w3b_A          140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR  217 (388)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence            55555666666666666666666553 3345566666666666666666666666666652 334556666666677777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      ++++|+..|++..... +.+..++..+..+|...|++++|...|+++.+.. +.++.+|..++.++.+.|++++|.+.|+
T Consensus       218 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  295 (388)
T 1w3b_A          218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777777777666532 2245666667777777777777777777776653 3346667777777777777777777777


Q ss_pred             HHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-
Q 037695          574 KMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-  651 (701)
Q Consensus       574 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-  651 (701)
                      ++++..|. ..++..++..+...|++++|...++++++.. +.+..++..++..|.+.|++++|+..++++++  +.|+ 
T Consensus       296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~  372 (388)
T 1w3b_A          296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF  372 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred             HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence            77766665 5666777777777777777777777776653 33566677777777777777777777777776  4443 


Q ss_pred             HhhHHHHHHHHHhcC
Q 037695          652 LKLCKKVSERLILEG  666 (701)
Q Consensus       652 ~~~~~~l~~~~~~~g  666 (701)
                      ...+..++..+...|
T Consensus       373 ~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          373 ADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHhHHHHHHHcc
Confidence            356666666665544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=4.6e-26  Score=235.94  Aligned_cols=285  Identities=15%  Similarity=0.087  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695          340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL  419 (701)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  419 (701)
                      .+|..+..++.+.|++++|...|+.+.... +.+...+..+...+...|++++|.+.|.++.... +.+..+|..+...+
T Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  179 (388)
T 1w3b_A          102 DGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVF  179 (388)
T ss_dssp             HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            345555555555555555555555555432 1123344444555555555555555555555432 23345555566666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL  499 (701)
Q Consensus       420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  499 (701)
                      ...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++.... +.+..++..+..+|...|++++|+
T Consensus       180 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~  257 (388)
T 1w3b_A          180 NAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAI  257 (388)
T ss_dssp             HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666666553 3345566666666667777777777776666552 335666777777777777777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037695          500 SLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ  579 (701)
Q Consensus       500 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  579 (701)
                      ..|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++++..
T Consensus       258 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          258 DTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7777777643 2345667777777777777777777777777653 5567777777777777888888888888877777


Q ss_pred             CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          580 KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       580 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                      |. ..++..++.+|.+.|++++|...++++++..+ .+...|..++..+...|
T Consensus       336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence            66 56777777788888888888888887777543 35666777776666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=1.1e-28  Score=259.54  Aligned_cols=216  Identities=14%  Similarity=0.147  Sum_probs=182.3

Q ss_pred             hHHHHHHHHHHhCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 037695          228 AKALRFLERMQLAGITPNV-LTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEK  306 (701)
Q Consensus       228 ~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~  306 (701)
                      ..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+...+       
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~-------   79 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE-------   79 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence            3445566667666655443 45788899999999999999999999999999999999999999887765321       


Q ss_pred             HHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          307 MVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH  386 (701)
Q Consensus       307 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  386 (701)
                             ....+.++.|.++|++|...|+.||..||++||.+|++.|++++|.++|++|...|+.||..+|+++|.+|++
T Consensus        80 -------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~  152 (501)
T 4g26_A           80 -------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR  152 (501)
T ss_dssp             -------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             -------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence                   2334678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  457 (701)
                      .|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.1e-28  Score=257.30  Aligned_cols=205  Identities=12%  Similarity=0.146  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 037695          323 AKELVNQMSQMGCIPDV-VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGK---------SLE  392 (701)
Q Consensus       323 a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~  392 (701)
                      +..+...+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.         ++.
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            44455566666655443 46888999999999999999999999999999999999999999987665         678


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          393 AREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLN  472 (701)
Q Consensus       393 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  472 (701)
                      |.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695          473 KGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN  527 (701)
Q Consensus       473 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~  527 (701)
                      .|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999988753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3e-24  Score=231.29  Aligned_cols=437  Identities=9%  Similarity=-0.029  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037695          176 PEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKG  255 (701)
Q Consensus       176 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  255 (701)
                      ...+......+.+.|++++|+..|+++.+..  |+..++..+..++.+.|++++|...++++.+.+ +.+..+|..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            4566777778888888888888888887764  678888888888888888888888888887653 4456678888888


Q ss_pred             HHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC
Q 037695          256 YCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC  335 (701)
Q Consensus       256 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~  335 (701)
                      |.+.|++++|...|+.+...+ +++......++..+........+.+                       .+..+...+.
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~~~~~~  138 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKE-----------------------KFGDIDTATA  138 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTT-----------------------C---------
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHH
Confidence            888888888888888887664 2333333344433332211111111                       1111111111


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-
Q 037695          336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP---------NTVSYTAFLNGLCH---NGKSLEAREMINTSEE-  402 (701)
Q Consensus       336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-  402 (701)
                      .|+...+..-...............+...+......+         +...+..+...+..   .|++++|...|+++.. 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  218 (514)
T 2gw1_A          139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL  218 (514)
T ss_dssp             ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence            2222222211111111111111111111111111110         12222222222222   4555555555555554 


Q ss_pred             ----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          403 ----EWW--------TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQEC  470 (701)
Q Consensus       403 ----~~~--------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  470 (701)
                          ...        +.+..++..+...+...|++++|...++.+.+..  |+...+..+...+...|++++|...++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                100        1123344444555555555555555555555443  12444555555555555555555555555


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695          471 LNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVV  550 (701)
Q Consensus       471 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  550 (701)
                      .... +.+...+..+...|...|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+++++.+.. +.+..
T Consensus       297 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  373 (514)
T 2gw1_A          297 LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE  373 (514)
T ss_dssp             HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred             hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence            4431 2244445555555555555555555555555432 2233445555555555555555555555555432 22344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-h------HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-T------AYNQVIENLCS---FGYLEEAGKILGKVLRTASKADASTC  620 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~  620 (701)
                      ++..+...+...|++++|...++++....|.. .      ++..++.++..   .|++++|...++++++..+ .+..++
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~  452 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAK  452 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence            45555555555555555555555554443331 1      44555555555   5555555555555554432 244445


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          621 HVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       621 ~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..++..|...|++++|...++++.+
T Consensus       453 ~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          453 IGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            5555555555555555555555555

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.1e-23  Score=224.73  Aligned_cols=459  Identities=11%  Similarity=0.002  Sum_probs=333.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037695          141 PIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHV  220 (701)
Q Consensus       141 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~  220 (701)
                      ...+......+.+.|++++|...|+++.+..  |++.+|..+..++.+.|++++|...|+.+.+.. +.+..++..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            4567788889999999999999999999865  689999999999999999999999999998765 5677889999999


Q ss_pred             HHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 037695          221 LVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV  300 (701)
Q Consensus       221 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a  300 (701)
                      +.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+................
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            999999999999999998875 4455555555555555444444444444443333233332222211111111111111


Q ss_pred             HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--
Q 037695          301 RDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCR---VGELDQAKKMLQQMYH-----HGC--  370 (701)
Q Consensus       301 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~--  370 (701)
                      ..+...+.. ....+...             ...-+.+...+......+..   .|++++|..+|+.+..     ...  
T Consensus       162 ~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  227 (514)
T 2gw1_A          162 TSMASFFGI-FKPELTFA-------------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN  227 (514)
T ss_dssp             HHHHHHHTT-SCCCCCCS-------------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred             HHHHHHHhh-cCHHHHHH-------------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence            111000000 00000000             00001224445555555554   8999999999999987     311  


Q ss_pred             ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037695          371 ------KPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTP  444 (701)
Q Consensus       371 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~  444 (701)
                            +.+..++..+...+...|++++|...++++....  |+...+..+...+...|++++|...++.+.+.. +.+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  304 (514)
T 2gw1_A          228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNS  304 (514)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCT
T ss_pred             cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCH
Confidence                  2235677888889999999999999999998865  447888889999999999999999999998874 5567


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037695          445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL  524 (701)
Q Consensus       445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~  524 (701)
                      ..+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|+..++++.+.. +.+..++..+..+|
T Consensus       305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  382 (514)
T 2gw1_A          305 SVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEIL  382 (514)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHH
Confidence            788999999999999999999999998873 4467888999999999999999999999998753 34577889999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695          525 SKNGRVEEATELMMKMLSKGL-VPT----VVTYRTVIHRYCQ---VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF  595 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~  595 (701)
                      ...|++++|...++++..... .++    ..++..+...+..   .|++++|...++++....|. ..++..++.+|...
T Consensus       383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  462 (514)
T 2gw1_A          383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ  462 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            999999999999999887421 111    3488899999999   99999999999999998887 77889999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          596 GYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                      |++++|...++++++..+. +...+..+
T Consensus       463 g~~~~A~~~~~~a~~~~~~-~~~~~~~~  489 (514)
T 2gw1_A          463 EDIDEAITLFEESADLART-MEEKLQAI  489 (514)
T ss_dssp             TCHHHHHHHHHHHHHHCSS-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence            9999999999999987643 44444333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=1.3e-22  Score=219.70  Aligned_cols=433  Identities=10%  Similarity=0.014  Sum_probs=287.2

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037695          175 RPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIK  254 (701)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  254 (701)
                      ....+..+...+.+.|++++|+..|+++.+.. +.++.++..+..++.+.|++++|+..|+++.... +.+..++..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            45677888888889999999999999988765 5678888889999999999999999999988764 456778888888


Q ss_pred             HHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcC
Q 037695          255 GYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMG  334 (701)
Q Consensus       255 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~  334 (701)
                      ++...|++++|...|+.+..   .|+..  ...+..+...+....|...++.+....+                . ....
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~----------------~-~~~~  159 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDE----------------G-RGSQ  159 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC------------------------C
T ss_pred             HHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCc----------------c-cccc
Confidence            99999999999998863322   23321  1223333344444455555554433100                0 0011


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCC
Q 037695          335 CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTV-SYTAFLNGLCHN--------GKSLEAREMINTSEEEWW  405 (701)
Q Consensus       335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~  405 (701)
                      ..|+..    .+..+....+.+.+...+......  .+... ....+...+...        |++++|..+++++.+.. 
T Consensus       160 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-  232 (537)
T 3fp2_A          160 VLPSNT----SLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-  232 (537)
T ss_dssp             CCCCHH----HHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             ccchHh----HHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-
Confidence            223333    344455566666665544433321  22222 233333333222        36778888888877653 


Q ss_pred             CCC--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          406 TPN--------AITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV  477 (701)
Q Consensus       406 ~~~--------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  477 (701)
                       |+        ..++..+...+...|++++|...++.+.+.  .|+...+..+...+...|+++.|...++.+.+.. +.
T Consensus       233 -p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  308 (537)
T 3fp2_A          233 -TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE  308 (537)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT
T ss_pred             -CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC
Confidence             33        224555666777788888888888888776  3446777777777778888888888888877763 44


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      +..++..+...+...|++++|+..|+++.... +.+...+..+..+|...|++++|..+++++.+.. +.+..++..+..
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  386 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAE  386 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            66777777888888888888888888877643 3345677777778888888888888888877753 445667777778


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSF----------GYLEEAGKILGKVLRTASKADASTC  620 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~  620 (701)
                      .+...|++++|.+.|+++....|.       ...+..++.++...          |++++|...++++++..+ .+...+
T Consensus       387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~  465 (537)
T 3fp2_A          387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAK  465 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHH
Confidence            888888888888888877766433       12234455666666          888888888888877653 366777


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          621 HVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       621 ~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..++..|...|++++|+..++++.+
T Consensus       466 ~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          466 IGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            7788888888888888888888877

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=5.6e-22  Score=209.64  Aligned_cols=342  Identities=15%  Similarity=0.096  Sum_probs=287.1

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 037695          336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVV  415 (701)
Q Consensus       336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  415 (701)
                      +.+...+..+...+.+.|++++|+.+|+.+.... +.+..++..+..++...|++++|...|+++.+.. +.+...+..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence            4467789999999999999999999999998763 4578899999999999999999999999998865 4567889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 037695          416 MHGLRREGKLSEACDVVREMVKKGFFPTP---VEINLL------------IQSLCREGKMDGAKKFMQECLNKGCAVNVV  480 (701)
Q Consensus       416 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  480 (701)
                      ..+|.+.|++++|...|+++.+.. +.+.   ..+..+            ...+...|++++|..+|+.+.+. .+.+..
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~  178 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAE  178 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChH
Confidence            999999999999999999999874 3333   455544            44488999999999999999886 355888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 037695          481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV-----  555 (701)
Q Consensus       481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----  555 (701)
                      .+..+..+|.+.|++++|+..|+++.+.. +.+..+|..++.+|...|++++|...|+++.... +.+...+..+     
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            99999999999999999999999998753 4568899999999999999999999999999753 4455555555     


Q ss_pred             -------HHHHHhcCCHHHHHHHHHHHHhcCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          556 -------IHRYCQVGRVEDLLKLLEKMLSKQKC-----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       556 -------~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                             +..|.+.|++++|..+|++++...|.     ...+..++.++.+.|++++|+..++++++.. +.+..+|..+
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                   78899999999999999999998887     2467888999999999999999999999875 3478999999


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHHcCCC
Q 037695          624 VESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER------------LILEG-----KSEEADTLMLR-FVERGHI  684 (701)
Q Consensus       624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~  684 (701)
                      +.+|...|++++|+..++++++  +.|+ ...+..+..+            |...|     +.+++.+.|++ +++..|.
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd  413 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD  413 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999  5665 4666666633            33344     66788888886 6666664


Q ss_pred             CC
Q 037695          685 QP  686 (701)
Q Consensus       685 ~~  686 (701)
                      +.
T Consensus       414 ~~  415 (450)
T 2y4t_A          414 NF  415 (450)
T ss_dssp             GC
T ss_pred             CC
Confidence            43

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.3e-21  Score=206.76  Aligned_cols=335  Identities=14%  Similarity=0.093  Sum_probs=262.7

Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 037695          279 PDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQA  358 (701)
Q Consensus       279 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a  358 (701)
                      .+...+..+...+.+.|++++|..+|+.+..                       . .+.+..+|..+..+|...|++++|
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------------------~-~p~~~~~~~~l~~~~~~~g~~~~A   79 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD-----------------------G-DPDNYIAYYRRATVFLAMGKSKAA   79 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------h-CCccHHHHHHHHHHHHHCCCHHHH
Confidence            3456677777777777777777766666644                       1 234677788888888888888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHhcC
Q 037695          359 KKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNA---ITYSVV------------MHGLRREG  423 (701)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g  423 (701)
                      +..|+.+.+.+ +.+..++..+..+|.+.|++++|...|+++.... +.+.   ..+..+            ...+...|
T Consensus        80 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  157 (450)
T 2y4t_A           80 LPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG  157 (450)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888764 3357778888888888888888888888888753 2223   444444            44488899


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD  503 (701)
Q Consensus       424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  503 (701)
                      ++++|+..|+.+.+.. +.+...+..+..+|...|++++|..+|+.+.+. .+.+..+|..+..+|...|++++|+..|+
T Consensus       158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  235 (450)
T 2y4t_A          158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVR  235 (450)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999998874 567888999999999999999999999999876 35578899999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 037695          504 DMYLCKKDPDTVTYTTI------------IDALSKNGRVEEATELMMKMLSKGLVPT-----VVTYRTVIHRYCQVGRVE  566 (701)
Q Consensus       504 ~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~  566 (701)
                      ++.... +.+...+..+            +.+|...|++++|..+|+++.+.  .|+     ..++..++.++.+.|+++
T Consensus       236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~  312 (450)
T 2y4t_A          236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV  312 (450)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence            998742 2234444444            78899999999999999999985  344     447888899999999999


Q ss_pred             HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHhcC--
Q 037695          567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES------------YLNKG--  631 (701)
Q Consensus       567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g--  631 (701)
                      +|+..+++++...|. ..++..++.+|...|++++|...++++++..+. +...+..+..+            |...|  
T Consensus       313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~  391 (450)
T 2y4t_A          313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVK  391 (450)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence            999999999988886 789999999999999999999999999986543 67777777633            33444  


Q ss_pred             ---ChhhHHHHHHH-HHh
Q 037695          632 ---IPLLAYKVACR-MFN  645 (701)
Q Consensus       632 ---~~~~A~~~~~~-~~~  645 (701)
                         +.+++.+.+++ ..+
T Consensus       392 ~~~~~~~~~~~y~~~~l~  409 (450)
T 2y4t_A          392 RNAKKQEIIKAYRKLALQ  409 (450)
T ss_dssp             TTCCTTHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence               45667777776 555

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=4.7e-22  Score=215.38  Aligned_cols=436  Identities=11%  Similarity=0.024  Sum_probs=317.3

Q ss_pred             CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037695          140 DPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIH  219 (701)
Q Consensus       140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  219 (701)
                      .+..|..+...+.+.|+++.|...|+.+.+.. +.++.++..+..+|.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            35678888999999999999999999998865 4588889999999999999999999999988765 567888888999


Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCh
Q 037695          220 VLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKG--CSPDKVSYYTVMGYLCKEKRI  297 (701)
Q Consensus       220 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~ll~~~~~~g~~  297 (701)
                      ++...|++++|...|+.+ ..  .|+.  ....+..+...+....|...++.+....  ..+........+..+....+.
T Consensus       102 ~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS  176 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence            999999999999999633 22  2332  2233445566666788888888886541  111222233444555555554


Q ss_pred             hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHHc
Q 037695          298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVV-TYTAVVNGFCRV--------GELDQAKKMLQQMYHH  368 (701)
Q Consensus       298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~--------g~~~~a~~~~~~~~~~  368 (701)
                      ..+...+....                         ...+... ....+...+...        |++++|..+++.+...
T Consensus       177 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~  231 (537)
T 3fp2_A          177 HLEVSSVNTSS-------------------------NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA  231 (537)
T ss_dssp             HHHHHTSCCCC-------------------------SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhcc-------------------------ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44332222111                         1122222 233333333222        4788888899888865


Q ss_pred             CCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          369 GCKPN--------TVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGF  440 (701)
Q Consensus       369 ~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~  440 (701)
                      .  |+        ..++..+...+...|++++|...+..+....  |+...+..+...+...|++++|...++.+.+.. 
T Consensus       232 ~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  306 (537)
T 3fp2_A          232 N--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-  306 (537)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred             C--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence            3  33        2246666777888899999999999988863  667788888888899999999999999988875 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695          441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTI  520 (701)
Q Consensus       441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  520 (701)
                      +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l  384 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFF  384 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            5567888889999999999999999999988863 4467788889999999999999999999988753 4456788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCC-hhH
Q 037695          521 IDALSKNGRVEEATELMMKMLSKG-----LVPTVVTYRTVIHRYCQV----------GRVEDLLKLLEKMLSKQKC-RTA  584 (701)
Q Consensus       521 i~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~-~~~  584 (701)
                      ..+|...|++++|...|+++.+..     .......+..+...+.+.          |++++|...|+++.+..|. ..+
T Consensus       385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  464 (537)
T 3fp2_A          385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA  464 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999887642     111223345556677777          9999999999999988887 778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      +..++.+|...|++++|...|+++++..+.
T Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          465 KIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            888999999999999999999999887643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=1.1e-19  Score=185.53  Aligned_cols=326  Identities=17%  Similarity=0.137  Sum_probs=223.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 037695          338 DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMH  417 (701)
Q Consensus       338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  417 (701)
                      ++..+..+...+...|++++|+..|+.+.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            34556666777777777777777777777653 2356666777777777777777777777766643 334556666667


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          418 GLRREGKLSEACDVVREMVKKGFF---PTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD  494 (701)
Q Consensus       418 ~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  494 (701)
                      .+...|++++|...++.+.+.. +   .+...+..+.....                       ...+..+...+...|+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence            7777777777777777766652 1   12222222211100                       1112233566777888


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK  574 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  574 (701)
                      +++|+..++++.+.. +.+...+..+..+|...|++++|...++++.... +.+..++..+...+...|++++|...+++
T Consensus       136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  213 (359)
T 3ieg_A          136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE  213 (359)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888888877643 3456677777788888888888888888887763 55677777888888888888888888888


Q ss_pred             HHhcCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhhHH
Q 037695          575 MLSKQKC-RTAYN------------QVIENLCSFGYLEEAGKILGKVLRTASKADAS----TCHVLVESYLNKGIPLLAY  637 (701)
Q Consensus       575 ~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~  637 (701)
                      +.+..|. ...+.            .++..+...|++++|...++++++..+. ++.    .+..++..|...|++++|+
T Consensus       214 a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence            8877776 33322            2366677888888888888888876543 332    3445777888888888888


Q ss_pred             HHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          638 KVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       638 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      ..++++.+.  .| +..++..++.+|...|++++|...|+++++..|..+.....|..
T Consensus       293 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  348 (359)
T 3ieg_A          293 RICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK  348 (359)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            888888883  44 45778888888888888888888888888888776666665554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=7.8e-19  Score=179.09  Aligned_cols=315  Identities=14%  Similarity=0.074  Sum_probs=232.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695          316 DQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEARE  395 (701)
Q Consensus       316 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  395 (701)
                      ..|++++|...|..+.+.. +.+..++..+...+...|++++|...++.+.... +.+...+..+...+...|++++|..
T Consensus        15 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~   92 (359)
T 3ieg_A           15 AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED   92 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence            4589999999999999864 3467899999999999999999999999999864 3367889999999999999999999


Q ss_pred             HHHHHHhCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          396 MINTSEEEWWTP----NAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECL  471 (701)
Q Consensus       396 ~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  471 (701)
                      .+.++.+..  |    +...+..+.....                       ...+..+...+...|++++|..+++.+.
T Consensus        93 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~  147 (359)
T 3ieg_A           93 DFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAAITFLDKIL  147 (359)
T ss_dssp             HHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999863  4    3333333321100                       1123334455666777777777777766


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 037695          472 NKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT  551 (701)
Q Consensus       472 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  551 (701)
                      +. .+.+...+..+..++...|++++|+..++++.... +.+..++..+...|...|++++|...|++..+.. +.+...
T Consensus       148 ~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~  224 (359)
T 3ieg_A          148 EV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRC  224 (359)
T ss_dssp             HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             Hh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHH
Confidence            65 23456666677777777777777777777776643 3456667777777777777777777777776643 333333


Q ss_pred             HH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          552 YR------------TVIHRYCQVGRVEDLLKLLEKMLSKQKCR-----TAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       552 ~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      +.            .++..+.+.|++++|...++++....|..     ..+..++.++...|++++|...++++++.. +
T Consensus       225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~  303 (359)
T 3ieg_A          225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-P  303 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c
Confidence            32            33667888999999999999999888773     235567888999999999999999998875 3


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 037695          615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLI  663 (701)
Q Consensus       615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~  663 (701)
                      .++.++..++..|...|++++|+..++++.+  ..|+ ......+..+..
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR  351 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence            4788899999999999999999999999998  5555 355555554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=7.1e-19  Score=177.18  Aligned_cols=290  Identities=13%  Similarity=-0.006  Sum_probs=215.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          371 KPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLL  450 (701)
Q Consensus       371 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l  450 (701)
                      +.+...+..+...+...|++++|..+|+++.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            4456667777778888888888888888887654 4455566667777888888888888888887764 4456777778


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695          451 IQSLCREG-KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGR  529 (701)
Q Consensus       451 i~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  529 (701)
                      ...+...| ++++|...++.+.... +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...|...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            88888888 8888888888887763 4456777788888888888888888888887643 3345666667888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CC-hhHHHHHHHHHHhcCCHH
Q 037695          530 VEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ---------KC-RTAYNQVIENLCSFGYLE  599 (701)
Q Consensus       530 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~-~~~~~~l~~~~~~~g~~~  599 (701)
                      +++|...++++.+.. +.+..++..+...+...|++++|...++++....         |. ..++..++.+|...|+++
T Consensus       175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            888888888887764 5567778888888888888888888888877653         22 457778888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHH-HhcCCH
Q 037695          600 EAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERL-ILEGKS  668 (701)
Q Consensus       600 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~  668 (701)
                      +|...++++++..+. +...+..++..|...|++++|+..++++.+  +.| +...+..++.++ ...|+.
T Consensus       254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence            888888888876533 667777888888888888888888888877  445 346666677666 344553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=2.1e-18  Score=173.67  Aligned_cols=286  Identities=10%  Similarity=0.011  Sum_probs=169.7

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 037695          336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVV  415 (701)
Q Consensus       336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  415 (701)
                      +.+...+..+...+...|++++|..+|+.+.... +.+...+..++..+...|++++|..++.++.+.. +.+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            3344555556666666666666666666666543 2234445555566666666666666666666542 3345556666


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          416 MHGLRREG-KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD  494 (701)
Q Consensus       416 l~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  494 (701)
                      ...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            66666666 6666666666666553 3345556666666666666666666666666552 2244555556666666666


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHH
Q 037695          495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG--------LVPTVVTYRTVIHRYCQVGRVE  566 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~  566 (701)
                      +++|...+++..+.. +.+...+..+...|...|++++|...++++.+..        .+....++..+..++...|+++
T Consensus       175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            666666666666542 3345566666666666666666666666665421        1223455666666666666666


Q ss_pred             HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      +|...++++.+..|. ..++..++.++...|++++|...++++++..+ .+...+..++.++
T Consensus       254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~  314 (330)
T 3hym_B          254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence            666666666666555 55666666666666666666666666665442 2555555555555

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.85  E-value=2.1e-16  Score=168.44  Aligned_cols=385  Identities=12%  Similarity=0.031  Sum_probs=255.9

Q ss_pred             ChHHHHHHHHHHHh----cCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCC
Q 037695          245 NVLTYNCLIKGYCD----LHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCK----EKRIKEVRDLMEKMVNDSNLFHD  316 (701)
Q Consensus       245 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~  316 (701)
                      +...+..+...|..    .+++++|...|+...+.|   +...+..|...|..    .+++++|...|+..         
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a---------  105 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA---------  105 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---------
Confidence            44445555555555    556666666666655543   34445555555544    33444333333333         


Q ss_pred             CCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 037695          317 QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCR----VGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH----NG  388 (701)
Q Consensus       317 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g  388 (701)
                                    .+.|   +...+..|...|..    .+++++|...|+...+.|   +...+..|...|..    .+
T Consensus       106 --------------~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~  165 (490)
T 2xm6_A          106 --------------ALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR  165 (490)
T ss_dssp             --------------HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             --------------HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence                          2222   44455555555655    566777777777766654   45556666666665    56


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 037695          389 KSLEAREMINTSEEEWWTPNAITYSVVMHGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKM  460 (701)
Q Consensus       389 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~  460 (701)
                      ++++|...|++..+.+   +...+..+...|..    .++.++|...|++..+.|   ++..+..+...|..    .+++
T Consensus       166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~  239 (490)
T 2xm6_A          166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY  239 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence            7777777777776653   55666666666666    677777777777777664   45566666666665    6778


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHH
Q 037695          461 DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-----GRVE  531 (701)
Q Consensus       461 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~  531 (701)
                      ++|..+|++..+.+   +...+..+...|..    .+++++|+..|++..+.|   +...+..+...|...     ++++
T Consensus       240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~  313 (490)
T 2xm6_A          240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE  313 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence            88888888877654   45566667777776    788888888888887654   455666777777776     8888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHH
Q 037695          532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVG---RVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKI  604 (701)
Q Consensus       532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~  604 (701)
                      +|...|++..+.|   +...+..+...|...|   ++++|+++|+++.+. .++.++..++..|..    .+++++|...
T Consensus       314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  389 (490)
T 2xm6_A          314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIW  389 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            8888888888865   4567777777777766   788889988888876 457788888888887    7889999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCC-C-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          605 LGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLI-P-DLKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      |+++.+.+   ++..+..|+..|..    .+++++|...|+++.+.+.. | +......++..+.  .+.+.|.+...++
T Consensus       390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~  464 (490)
T 2xm6_A          390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQY  464 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHH
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHH
Confidence            99888754   57788888888888    78899999999998885533 2 2234444443333  2345555555555


Q ss_pred             HHcC
Q 037695          679 VERG  682 (701)
Q Consensus       679 ~~~~  682 (701)
                      .++.
T Consensus       465 ~~~~  468 (490)
T 2xm6_A          465 IEKY  468 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.85  E-value=2.7e-16  Score=167.56  Aligned_cols=365  Identities=11%  Similarity=0.005  Sum_probs=302.3

Q ss_pred             HHHHHHchhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHH
Q 037695          266 IKLIDEMPLKGCSPDKVSYYTVMGYLCK----EKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVT  341 (701)
Q Consensus       266 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  341 (701)
                      .+.+....+.|   +...+..+...|..    .+++                       ++|...|....+.|   +...
T Consensus        27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~-----------------------~~A~~~~~~a~~~~---~~~a   77 (490)
T 2xm6_A           27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDL-----------------------TQAMDWFRRAAEQG---YTPA   77 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH-----------------------HHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCH-----------------------HHHHHHHHHHHHCC---CHHH
Confidence            44454444432   56666666666665    4444                       44555555544443   5677


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695          342 YTAVVNGFCR----VGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH----NGKSLEAREMINTSEEEWWTPNAITYS  413 (701)
Q Consensus       342 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~  413 (701)
                      +..|...|..    .+++++|..+|++..+.|   +...+..|...|..    .+++++|...|++..+.+   +...+.
T Consensus        78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  151 (490)
T 2xm6_A           78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQ  151 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            8888888988    899999999999999875   66777888888888    789999999999998865   567777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          414 VVMHGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKMDGAKKFMQECLNKGCAVNVVNFTSL  485 (701)
Q Consensus       414 ~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  485 (701)
                      .+...|..    .++.++|+..|++..+.|   ++..+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus       152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l  225 (490)
T 2xm6_A          152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL  225 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            88888887    789999999999999875   67888888888888    899999999999998875   66778888


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          486 IRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       486 l~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      ...|..    .+++++|...|++..+.|   +...+..+...|..    .+++++|+..|++..+.|   ++..+..+..
T Consensus       226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~  299 (490)
T 2xm6_A          226 ADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH  299 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence            888886    899999999999998754   56677778888887    899999999999998865   5677888888


Q ss_pred             HHHhc-----CCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          558 RYCQV-----GRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG---YLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       558 ~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      .|...     +++++|+..|+++.+.+ ...++..++..|...|   ++++|+.+|+++.+.+   ++..+..|+..|..
T Consensus       300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~  375 (490)
T 2xm6_A          300 LYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQ  375 (490)
T ss_dssp             HHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence            88887     89999999999998864 4677888999888766   8999999999999863   78899999999999


Q ss_pred             ----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 037695          630 ----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL----EGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       630 ----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  684 (701)
                          .+++++|+..++++.+.+   +...+..++..|.+    .+++++|..+|+++.+.++.
T Consensus       376 g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          376 GKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence                899999999999999954   56788889999998    89999999999999999854

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.84  E-value=1.1e-16  Score=172.35  Aligned_cols=427  Identities=11%  Similarity=0.036  Sum_probs=269.7

Q ss_pred             CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHH
Q 037695          208 APNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTV  287 (701)
Q Consensus       208 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l  287 (701)
                      +-+...|..++.. .+.|+++.|..+|+++... .+.+...|..++..+.+.|++++|.++|+++...  .|+...|...
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~   85 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY   85 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence            3455666666663 5566777777777776654 2445556666777777777777777777777655  3555555555


Q ss_pred             HHHH-HHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH-cCCCc-CHHHHHHHHHHHHh---------cCCH
Q 037695          288 MGYL-CKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQ-MGCIP-DVVTYTAVVNGFCR---------VGEL  355 (701)
Q Consensus       288 l~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~p-~~~~~~~li~~~~~---------~g~~  355 (701)
                      +... ...|+.+.|.+.+.                   .+|+.... .|..| +...|...+....+         .|++
T Consensus        86 ~~~~~~~~~~~~~a~~~~~-------------------~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  146 (530)
T 2ooe_A           86 LSYVRETKGKLPSYKEKMA-------------------QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI  146 (530)
T ss_dssp             HHHHHHHTTTSTTHHHHHH-------------------HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred             HHHHHHHccchhhHHHHHH-------------------HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence            5322 23455554443211                   12222211 23222 44566666655443         6788


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          356 DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREM  435 (701)
Q Consensus       356 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m  435 (701)
                      +.|..+|++.+..........|..........|. ..+..++.                     .+.+++..|..+++.+
T Consensus       147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~  204 (530)
T 2ooe_A          147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEY  204 (530)
T ss_dssp             HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHH
Confidence            8888888888873111111233222211100110 00111110                     0123344455444442


Q ss_pred             H------HcC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          436 V------KKG---FFPT--------PVEINLLIQSLCRE----GKM----DGAKKFMQECLNKGCAVNVVNFTSLIRGFC  490 (701)
Q Consensus       436 ~------~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  490 (701)
                      .      +..   ++|+        ...|...+......    ++.    ..+..+|++++.. .+.+...|..++..+.
T Consensus       205 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~  283 (530)
T 2ooe_A          205 ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLE  283 (530)
T ss_dssp             HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence            1      111   2333        13444444332221    222    3677788888776 4557788888888777


Q ss_pred             h-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHH
Q 037695          491 Q-------KGDLE-------EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT-V-VTYRT  554 (701)
Q Consensus       491 ~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~  554 (701)
                      +       .|+++       +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++++.  +|+ . ..|..
T Consensus       284 ~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~  361 (530)
T 2ooe_A          284 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ  361 (530)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred             HhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence            5       68876       89999999875222345778888888899999999999999999885  443 3 57888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN-LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI  632 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  632 (701)
                      ++..+.+.|++++|.++|+++++..|. ...+...+.. +...|+.++|..+|+++++..+ .++..|..++..+.+.|+
T Consensus       362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~  440 (530)
T 2ooe_A          362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNE  440 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCC
Confidence            888888899999999999999987765 3334333333 3468999999999999988753 478889999999999999


Q ss_pred             hhhHHHHHHHHHhCCC-CCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          633 PLLAYKVACRMFNRNL-IPD--LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       633 ~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      .++|..+|++++..+. .|+  ..++..++......|+.+.+..++.++.+..|
T Consensus       441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999999999998543 232  35777778888889999999999999988876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.84  E-value=9.5e-17  Score=172.91  Aligned_cols=389  Identities=13%  Similarity=0.107  Sum_probs=275.6

Q ss_pred             CCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHH
Q 037695          243 TPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEE  322 (701)
Q Consensus       243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~  322 (701)
                      +-+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++++.             
T Consensus        10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~-------------   74 (530)
T 2ooe_A           10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM-------------   74 (530)
T ss_dssp             TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------------
T ss_pred             CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------
Confidence            446778888888 47889999999999999876 344677888999998888888888888877765             


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------
Q 037695          323 AKELVNQMSQMGCIPDVVTYTAVVNGF-CRVGELDQAKK----MLQQMYHH-GCKP-NTVSYTAFLNGLCH---------  386 (701)
Q Consensus       323 a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------  386 (701)
                                  ..|+...|..++... ...|+++.|.+    +|+..... |..| +...|...+.....         
T Consensus        75 ------------~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~  142 (530)
T 2ooe_A           75 ------------KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAE  142 (530)
T ss_dssp             ------------TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTH
T ss_pred             ------------cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHH
Confidence                        346777777766533 34567666554    66666543 4443 45677777766544         


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          387 NGKSLEAREMINTSEEEWWTPNA---ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGA  463 (701)
Q Consensus       387 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  463 (701)
                      .|+++.|..+|++....   |..   ..|..........|.                    .+...++.  ...+++..|
T Consensus       143 ~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A  197 (530)
T 2ooe_A          143 NQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNA  197 (530)
T ss_dssp             HHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHH
Confidence            67888899999888872   322   222211111000110                    01111111  123456667


Q ss_pred             HHHHHHH------HHcC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHH
Q 037695          464 KKFMQEC------LNKG---CAVN--------VVNFTSLIRGFCQK----GDL----EEALSLLDDMYLCKKDPDTVTYT  518 (701)
Q Consensus       464 ~~~~~~~------~~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~  518 (701)
                      ..++...      .+..   ++|+        ...|...+......    ++.    ..|..+|++..... +.+...|.
T Consensus       198 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~  276 (530)
T 2ooe_A          198 RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWY  276 (530)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            6666652      2221   2443        35666666544332    232    47888999988742 44678888


Q ss_pred             HHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h-
Q 037695          519 TIIDALSK-------NGRVE-------EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R-  582 (701)
Q Consensus       519 ~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~-  582 (701)
                      .++..+.+       .|+++       +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++..|. . 
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  356 (530)
T 2ooe_A          277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT  356 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH
T ss_pred             HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch
Confidence            88888775       79987       99999999987323556889999999999999999999999999999887 3 


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSE  660 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  660 (701)
                      .+|..++..+.+.|++++|..+|+++++..+ .+...+...+.. +...|++++|..+|+++++.  .| +...+..++.
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~  433 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYID  433 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            4888999999999999999999999998643 344444444333 34689999999999999994  45 4688899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          661 RLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      .+.+.|+.++|..+|+++++.++.+|.
T Consensus       434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          434 YLSHLNEDNNTRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred             HHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence            999999999999999999999876664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=4.4e-15  Score=165.04  Aligned_cols=422  Identities=13%  Similarity=0.137  Sum_probs=286.5

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHH
Q 037695          175 RPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAA--VAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCL  252 (701)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  252 (701)
                      ++.--...+.+|+..|.+.+|+++++++.-.+  ...+....+.++.+..+. +..+..++.......    +   ...+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence            44444555566666666666666666665221  012334455555555444 334444444433311    1   2224


Q ss_pred             HHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH
Q 037695          253 IKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQ  332 (701)
Q Consensus       253 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~  332 (701)
                      ...+...|.+++|..+|++...     .....+.++.   ..                       +++++|.++..+.  
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i-----------------------~nldrAiE~Aerv-- 1102 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HI-----------------------GNLDRAYEFAERC-- 1102 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HH-----------------------hhHHHHHHHHHhc--
Confidence            4555556666666666655310     1111111211   22                       3445555554433  


Q ss_pred             cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 037695          333 MGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITY  412 (701)
Q Consensus       333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  412 (701)
                          -+..+|..+..++...|++++|+..|.+.      -|...|..++..+.+.|++++|.+.+....+..  ++....
T Consensus      1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Id 1170 (1630)
T 1xi4_A         1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE 1170 (1630)
T ss_pred             ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccccc
Confidence                24678889999999999999999999663      377888899999999999999999998877754  444444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          413 SVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK  492 (701)
Q Consensus       413 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  492 (701)
                      +.++.+|++.+++++....    ++   .++...+..+...|...|++++|..+|..+         ..|..+..+|++.
T Consensus      1171 t~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A         1171 TELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 1234 (1630)
T ss_pred             HHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHh
Confidence            4688999999988854433    22   456677778999999999999999999874         4789999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLL  572 (701)
Q Consensus       493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  572 (701)
                      |++++|.+.+++.      .+..+|..+..+|...|++..|......     +..++..+..++..|.+.|.+++|+.++
T Consensus      1235 ge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A         1235 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred             CCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999877      3568899999999999999999887654     3446777889999999999999999999


Q ss_pred             HHHHhcCCC-hhHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          573 EKMLSKQKC-RTAYNQVIENLCS--FGYLEEAGKILGKVLRTAS----KADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       573 ~~~~~~~p~-~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +..+..++. ...+..++..|++  -+++.++.+.|..-.....    --+...|..++..|.+.|+++.|+...-.-..
T Consensus      1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~ 1383 (1630)
T 1xi4_A         1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 1383 (1630)
T ss_pred             HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccH
Confidence            999888766 5677777777765  4667777777775443211    12567788999999999999998843211110


Q ss_pred             C-----------CCCCCHhhHHHHHHHHHhcC---------------CHHHHHHHHH
Q 037695          646 R-----------NLIPDLKLCKKVSERLILEG---------------KSEEADTLML  676 (701)
Q Consensus       646 ~-----------~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~  676 (701)
                      .           ....+...|...+.-|....               +...++++|.
T Consensus      1384 ~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1384 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             hhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            0           12235677777777777655               6666666664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=5.1e-15  Score=164.58  Aligned_cols=411  Identities=12%  Similarity=0.134  Sum_probs=204.6

Q ss_pred             hcCCCHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCC--CCCHHHH
Q 037695          103 LRSLKPRQICAVLRSQADERVALQFFYWADRQ-WRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGI--ECRPEAF  179 (701)
Q Consensus       103 ~~~~~~~~~~~~l~~~~~~~~Al~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~  179 (701)
                      ..+-+++.|..||...+..  -..+.+|.... -.-..++.--...++.|...|.+.+|.++++.....+-  .-+....
T Consensus       948 v~r~d~~lW~~vl~~~n~~--RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A          948 VRRKDPELWGSVLLESNPY--RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred             HHhcCHHHHHHHhcCCcHH--HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence            4456666666666544322  22334453221 11133444555666666667777777777766663321  1233444


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 037695          180 SYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDL  259 (701)
Q Consensus       180 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  259 (701)
                      +.++.+..+. +..+...+.......       ....+...+...|.+++|..+|++..     -.....+.++.   ..
T Consensus      1026 nlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i 1089 (1630)
T 1xi4_A         1026 NLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HI 1089 (1630)
T ss_pred             HHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH
Confidence            4455444444 333444433333211       12224445555555555555555531     11111122211   44


Q ss_pred             CChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc------CCCCCCCCcHHHHHHHHHHHHHc
Q 037695          260 HRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVND------SNLFHDQGRIEEAKELVNQMSQM  333 (701)
Q Consensus       260 g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~g~~~~a~~~~~~~~~~  333 (701)
                      +++++|.++.++..      +..+|..+..++...|++++|...|.+....      .......|++++|.+++...++.
T Consensus      1090 ~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A         1090 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred             hhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45555555555331      3444555555555555555555555332000      00001114444444444444433


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695          334 GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS  413 (701)
Q Consensus       334 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  413 (701)
                      .  ++....+.++.+|++.++++....+.    .   .++...|..+...|...|++++|..+|...         ..|.
T Consensus      1164 ~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A         1164 A--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred             c--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence            2  22222334666666666666433221    1   234555556666666667777777766653         2566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          414 VVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG  493 (701)
Q Consensus       414 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  493 (701)
                      .+..++.+.|++++|.+.+++.      .+..+|..+..+|...|++..|......+     ..+...+..++..|.+.|
T Consensus      1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A         1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRG 1294 (1630)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcC
Confidence            6666777777777776666654      24456666666666666666666554432     224555556666677777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCH
Q 037695          494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN--GRVEEATELMMKMLSKGLVP------TVVTYRTVIHRYCQVGRV  565 (701)
Q Consensus       494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~  565 (701)
                      .+++|+.+++...... +-....|+-+...|++.  ++..++.++|..-.  +++|      +...|..++-.|.+.|++
T Consensus      1295 ~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A         1295 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred             CHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence            7777777776665432 22333454455555442  23334444443222  2222      345566666667777777


Q ss_pred             HHHH
Q 037695          566 EDLL  569 (701)
Q Consensus       566 ~~A~  569 (701)
                      +.|.
T Consensus      1372 dnA~ 1375 (1630)
T 1xi4_A         1372 DNAI 1375 (1630)
T ss_pred             HHHH
Confidence            7666

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=1.5e-18  Score=177.90  Aligned_cols=288  Identities=14%  Similarity=0.029  Sum_probs=200.0

Q ss_pred             CCHHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695          388 GKSLEARE-MINTSEEEWW---TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGA  463 (701)
Q Consensus       388 g~~~~A~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  463 (701)
                      |++++|.. .+.+......   ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  117 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA  117 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence            45555555 4443332210   1123445556666666666666666666666653 44555666666666666666666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhcC
Q 037695          464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT---------------IIDALSKNG  528 (701)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---------------li~~~~~~g  528 (701)
                      ...++++.+.. +.+..++..+..+|...|++++|+..|+++...... +...+..               .+..+...|
T Consensus       118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (368)
T 1fch_A          118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS  195 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence            66666666652 335666666666677777777777777766653311 1111110               233334889


Q ss_pred             CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVP--TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL  605 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  605 (701)
                      ++++|..+|+++.... +.  +..++..+...+.+.|++++|+..+++++...|. ..++..++.++...|++++|+..+
T Consensus       196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999998864 22  5888899999999999999999999999988887 778899999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC----------CHhhHHHHHHHHHhcCCHHHHHHHH
Q 037695          606 GKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP----------DLKLCKKVSERLILEGKSEEADTLM  675 (701)
Q Consensus       606 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~  675 (701)
                      +++++.. +.+...+..++.+|...|++++|+..++++++.....          ...++..++.+|...|++++|..++
T Consensus       275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  353 (368)
T 1fch_A          275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  353 (368)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence            9998875 3478889999999999999999999999988832221          1578889999999999999999988


Q ss_pred             HHHHH
Q 037695          676 LRFVE  680 (701)
Q Consensus       676 ~~~~~  680 (701)
                      ++.++
T Consensus       354 ~~~l~  358 (368)
T 1fch_A          354 ARDLS  358 (368)
T ss_dssp             TTCHH
T ss_pred             HHHHH
Confidence            65443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.81  E-value=1.8e-18  Score=177.16  Aligned_cols=264  Identities=13%  Similarity=0.034  Sum_probs=212.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695          408 NAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIR  487 (701)
Q Consensus       408 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  487 (701)
                      +...+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            44557778888888888888888888888774 5577888888888888999999999998888763 446788888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 037695          488 GFCQKGDLEEALSLLDDMYLCKKDPD-----------TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP--TVVTYRT  554 (701)
Q Consensus       488 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~  554 (701)
                      +|...|++++|+..|+++.+.  .|+           ...+..+..+|...|++++|..+|+++.... +.  +..++..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~  218 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG  218 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence            999999999999999888763  222           2334456788899999999999999999864 33  6889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      +...|...|++++|+..|+++++..|. ..++..++.+|...|++++|+..++++++..+ .+..++..++.+|...|++
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence            999999999999999999999999887 78899999999999999999999999998763 3688999999999999999


Q ss_pred             hhHHHHHHHHHhCCCC---C--------CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          634 LLAYKVACRMFNRNLI---P--------DLKLCKKVSERLILEGKSEEADTLMLR  677 (701)
Q Consensus       634 ~~A~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~  677 (701)
                      ++|+..++++++....   |        +..++..++.++...|+.+.|....++
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999883211   0        247888999999999999988877754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=8.3e-18  Score=172.31  Aligned_cols=290  Identities=11%  Similarity=0.021  Sum_probs=202.6

Q ss_pred             cCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 037695          352 VGELDQAKK-MLQQMYHHGC-KP--NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSE  427 (701)
Q Consensus       352 ~g~~~~a~~-~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  427 (701)
                      .|++++|.. .++....... .|  +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            355555555 5554332210 01  23345556666666666666666666666543 3345556666666666666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhc
Q 037695          428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTS---------------LIRGFCQK  492 (701)
Q Consensus       428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~  492 (701)
                      |...++++.+.. +.+..++..+...+...|++++|...++.+..... .+...+..               .+..+...
T Consensus       117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            666666666553 34556666666666666666666666666665421 12222211               23333488


Q ss_pred             CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          493 GDLEEALSLLDDMYLCKKD-PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKL  571 (701)
Q Consensus       493 g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  571 (701)
                      |++++|+..|+++.+.... ++..++..+..+|...|++++|...|+++.... +.+..++..++..+...|++++|...
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  273 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA  273 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999875322 147889999999999999999999999998864 55688999999999999999999999


Q ss_pred             HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCChhhHHHHH
Q 037695          572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA----------DASTCHVLVESYLNKGIPLLAYKVA  640 (701)
Q Consensus       572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~  640 (701)
                      |++++...|. ..++..++.+|...|++++|...++++++..+..          ...+|..++.+|...|++++|..++
T Consensus       274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  353 (368)
T 1fch_A          274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  353 (368)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence            9999998887 7789999999999999999999999998865432          2688999999999999999999887


Q ss_pred             HHHHh
Q 037695          641 CRMFN  645 (701)
Q Consensus       641 ~~~~~  645 (701)
                      .+.++
T Consensus       354 ~~~l~  358 (368)
T 1fch_A          354 ARDLS  358 (368)
T ss_dssp             TTCHH
T ss_pred             HHHHH
Confidence            65443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=2.1e-16  Score=167.83  Aligned_cols=379  Identities=14%  Similarity=0.049  Sum_probs=245.6

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHH
Q 037695          280 DKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC-IPDVVTYTAVVNGFCRVGELDQA  358 (701)
Q Consensus       280 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a  358 (701)
                      ....|+.|...+...|++++|.+.|++.                ++++........ +....+|+.+..+|...|++++|
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kA----------------l~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A  113 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKA----------------EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDV  113 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------HHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHH
Confidence            3456777777777777777777766544                333333322212 22467899999999999999999


Q ss_pred             HHHHHHHHHc-----C-CC-CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHH
Q 037695          359 KKMLQQMYHH-----G-CK-PNTVSYTAFLNGLCH--NGKSLEAREMINTSEEEWWTPNAITYSVVMHG---LRREGKLS  426 (701)
Q Consensus       359 ~~~~~~~~~~-----~-~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~  426 (701)
                      ...+++....     + .. ....++..+..++..  .+++++|...|++..+.. +.+...+..+..+   +...++.+
T Consensus       114 ~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~  192 (472)
T 4g1t_A          114 QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQ  192 (472)
T ss_dssp             HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHH
Confidence            9999887652     1 11 134556655555554  357999999999998754 2344445444444   44567888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          427 EACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLL  502 (701)
Q Consensus       427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~  502 (701)
                      +|++.+++.++.. +.+..++..+...+..    .+++++|..++++.... .+.+...+..+...|...|++++|+..+
T Consensus       193 ~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~  270 (472)
T 4g1t_A          193 NAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELL  270 (472)
T ss_dssp             CTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            9999999888874 4566666666655544    46788999999998876 3557888899999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695          503 DDMYLCKKDPDTVTYTTIIDALSKN-------------------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG  563 (701)
Q Consensus       503 ~~~~~~~~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  563 (701)
                      ++..+.. +.+..++..+..+|...                   +.++.|...+++..+.. +.+..++..+...|...|
T Consensus       271 ~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~  348 (472)
T 4g1t_A          271 KKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD  348 (472)
T ss_dssp             HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred             HHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence            9998743 33456666666665432                   23567778888877753 445666788888999999


Q ss_pred             CHHHHHHHHHHHHhcCCChh----HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695          564 RVEDLLKLLEKMLSKQKCRT----AYNQVIEN-LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       564 ~~~~A~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  638 (701)
                      ++++|+..|+++++..|...    .+..++.. +...|+.++|+..|.++++..+.  ......         ....+..
T Consensus       349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~~---------~~~~l~~  417 (472)
T 4g1t_A          349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKEK---------MKDKLQK  417 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHHH---------HHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHH---------HHHHHHH
Confidence            99999999999988877632    23334433 34678999999999999886533  222211         1233455


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHH
Q 037695          639 VACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEH  691 (701)
Q Consensus       639 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  691 (701)
                      ++++.+..++. +..++..++.+|...|++++|++.|+++++.++..|+....
T Consensus       418 ~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          418 IAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            66666663332 45789999999999999999999999999999888876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=3.9e-17  Score=160.29  Aligned_cols=246  Identities=13%  Similarity=0.101  Sum_probs=113.2

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          385 CHNGKSLEAREMINTSEEEWWTPNA--ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDG  462 (701)
Q Consensus       385 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  462 (701)
                      ...|++..|+..++.....  .|+.  .....+..+|...|+++.|+..++.    .-+|+..++..+...+...++.++
T Consensus        10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence            3445555555555443322  1221  2333344555555555555544432    123344444455555555555555


Q ss_pred             HHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          463 AKKFMQECLNKGC-AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKML  541 (701)
Q Consensus       463 a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  541 (701)
                      |...++++...+. +.+...+..+...+...|++++|++.+++      +.+...+..++..|.+.|++++|...|+++.
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5555555544432 22333344444555555555555555544      2344445555555555555555555555555


Q ss_pred             hCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037695          542 SKGLVPTVVTY---RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA  617 (701)
Q Consensus       542 ~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  617 (701)
                      +..  |+....   ..++..+...|++++|..+|+++.+..|. ..+++.++.++...|++++|...++++++..+. ++
T Consensus       158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~  234 (291)
T 3mkr_A          158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HP  234 (291)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred             hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence            432  221100   11112222334555555555555554444 444455555555555555555555555544322 44


Q ss_pred             HHHHHHHHHHHhcCChhh-HHHHHHHHHh
Q 037695          618 STCHVLVESYLNKGIPLL-AYKVACRMFN  645 (701)
Q Consensus       618 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~  645 (701)
                      .++..++..+...|+..+ +..+++++.+
T Consensus       235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            445555555555555443 3344455544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.79  E-value=2.1e-17  Score=166.04  Aligned_cols=267  Identities=12%  Similarity=-0.005  Sum_probs=200.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          410 ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGF  489 (701)
Q Consensus       410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  489 (701)
                      ..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSH   99 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCCHHHHHHHHHHH
Confidence            344555666666677777777776666653 345566666666677777777777777776665 234566666677777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695          490 CQKGDLEEALSLLDDMYLCKKDPDTVTYTTI--------------ID-ALSKNGRVEEATELMMKMLSKGLVPTVVTYRT  554 (701)
Q Consensus       490 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  554 (701)
                      ...|++++|+..++++..... .+...+..+              .. .+...|++++|..+++++.+.. +.+..++..
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  177 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS  177 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            777777777777777765321 111222222              22 3677889999999999998864 557888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      ++..+...|++++|.+.++++....|. ..++..++..+...|++++|...++++++..+ .+..++..++..|...|++
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~  256 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQY  256 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccH
Confidence            999999999999999999999988887 77889999999999999999999999988763 4788899999999999999


Q ss_pred             hhHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          634 LLAYKVACRMFNRNLIP-----------DLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       634 ~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      ++|+..++++.+....+           +...+..++.++.+.|++++|..+++++++.
T Consensus       257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            99999999998833221           2578888999999999999999998765543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=1.1e-16  Score=157.16  Aligned_cols=268  Identities=10%  Similarity=0.030  Sum_probs=177.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          417 HGLRREGKLSEACDVVREMVKKGFFPTP--VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD  494 (701)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  494 (701)
                      +-....|++..|+..++.....  .|+.  .....+.++|...|+++.|...++.    ..+|+..++..+...+...++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence            3445667777777776654332  2332  2445566777777777777765543    135566667777777777777


Q ss_pred             HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          495 LEEALSLLDDMYLCKKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      .++|++.++++...+..| +...+..+..+|...|++++|+..+++      +.+..++..++..+.+.|++++|.+.|+
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777777777777655444 344555666777777777777777765      4566777777777777777777777777


Q ss_pred             HHHhcCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695          574 KMLSKQKCRTA---YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP  650 (701)
Q Consensus       574 ~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  650 (701)
                      ++.+..|+...   ...++..+...|++++|..+|+++++.. +.++..++.++.++...|++++|...++++++.++. 
T Consensus       155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-  232 (291)
T 3mkr_A          155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-  232 (291)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence            77777766321   1223344445577777777777777764 446777777777777777777777777777773322 


Q ss_pred             CHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCchHHHHhhhhhh
Q 037695          651 DLKLCKKVSERLILEGKSEE-ADTLMLRFVERGHIQPKSEEHLQRQRVF  698 (701)
Q Consensus       651 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~  698 (701)
                      +..++..++..+...|+..+ +..+++++++..|..|.........+.|
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~f  281 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDF  281 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            44667777777777777765 4577777777777776666555544444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=1.3e-15  Score=161.65  Aligned_cols=372  Identities=13%  Similarity=0.015  Sum_probs=240.3

Q ss_pred             ChHHHHHHHHHHHhcCChhHHHHHHHHchhC--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 037695          245 NVLTYNCLIKGYCDLHRIKDAIKLIDEMPLK--------GCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHD  316 (701)
Q Consensus       245 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  316 (701)
                      ....||.|...+...|++++|++.|++..+.        .-+....+|+.+..+|...|++++|...+++...       
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~-------  122 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH-------  122 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence            3556777777777777777777777765431        1122356778888888888888888777765543       


Q ss_pred             CCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHH
Q 037695          317 QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRV--GELDQAKKMLQQMYHHGCKPNTVSYTAFLNG---LCHNGKSL  391 (701)
Q Consensus       317 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~  391 (701)
                               +..............++..+..++.+.  +++++|+..|++..... +-+...+..+..+   +...++.+
T Consensus       123 ---------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~  192 (472)
T 4g1t_A          123 ---------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQ  192 (472)
T ss_dssp             ---------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ---------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHH
Confidence                     211111111111344555555555544  46889999999888753 2234444444443   34567778


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          392 EAREMINTSEEEWWTPNAITYSVVMHGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFM  467 (701)
Q Consensus       392 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  467 (701)
                      +|+..+++..+.. +.+...+..+...+..    .+++++|...+++..... +.+..++..+...|...|++++|...+
T Consensus       193 ~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~  270 (472)
T 4g1t_A          193 NAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELL  270 (472)
T ss_dssp             CTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            8888888877653 3445555555555444    457788899998887764 567778888889999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695          468 QECLNKGCAVNVVNFTSLIRGFCQK-------------------GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG  528 (701)
Q Consensus       468 ~~~~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  528 (701)
                      +++.+.. |.+..++..+..+|...                   +.++.|...|+...+.. +.+..++..+...|...|
T Consensus       271 ~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~  348 (472)
T 4g1t_A          271 KKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD  348 (472)
T ss_dssp             HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred             HHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence            9988763 44666676666655432                   33567888888877643 334567888999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVPTVV--TYRTVIH-RYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKIL  605 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  605 (701)
                      ++++|...|++.++....|...  .+..+.. .....|++++|+..|+++++..|.......         ....+..++
T Consensus       349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~  419 (472)
T 4g1t_A          349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIA  419 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHH
Confidence            9999999999999864332221  2333332 235789999999999999999887433222         234456667


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695          606 GKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       606 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  647 (701)
                      ++.++.+ +.++.+|..++.+|...|++++|++.|+++++.+
T Consensus       420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7777765 4478899999999999999999999999999844

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=5.5e-17  Score=166.01  Aligned_cols=263  Identities=10%  Similarity=-0.034  Sum_probs=170.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          377 YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR  456 (701)
Q Consensus       377 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  456 (701)
                      +..+...+.+.|++++|..+|+++.... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+...|..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence            3444444444444444444444444332 2234444444444455555555555555444432 2334445555555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 037695          457 EGKMDGAKKFMQECLNKGCA---------VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PDTVTYTTIIDALSK  526 (701)
Q Consensus       457 ~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~  526 (701)
                      .|++++|...++++.+....         .....+..+...+...|++++|+..|+++.+.... ++..++..+...|..
T Consensus       146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  225 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL  225 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence            55555555555555443100         01233445677888889999999999998875321 157888889999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695          527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL  605 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  605 (701)
                      .|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++++..|. ..++..++.+|...|++++|...+
T Consensus       226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  304 (365)
T 4eqf_A          226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF  304 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999988864 557888999999999999999999999999988887 778889999999999999999999


Q ss_pred             HHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695          606 GKVLRTASKA-----------DASTCHVLVESYLNKGIPLLAYKVACR  642 (701)
Q Consensus       606 ~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~  642 (701)
                      +++++..+..           +..+|..+..++...|+.+.|..+..+
T Consensus       305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9988764321           357788999999999999887776554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.77  E-value=8.8e-17  Score=161.53  Aligned_cols=280  Identities=9%  Similarity=0.006  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 037695          339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHG  418 (701)
Q Consensus       339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~  418 (701)
                      ...+..+...+...|++++|..+|+.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            3445566666777777777777777776643 2355566666666666777777777666666542 3345555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCHH
Q 037695          419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL-IR-GFCQKGDLE  496 (701)
Q Consensus       419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~-~~~~~g~~~  496 (701)
                      +...|++++|...++++.+.. +.+...+..+...                      .|+......+ .. .+...|+++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence            666666666666666665542 1111111111000                      0011111112 22 366778889


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      +|...++++.+.. +.+...+..+...|...|++++|..+++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus       156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999998887753 3467788888889999999999999999988764 5568888899999999999999999999998


Q ss_pred             hcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695          577 SKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-----------DASTCHVLVESYLNKGIPLLAYKVACRMF  644 (701)
Q Consensus       577 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  644 (701)
                      +..|. ..++..++.+|...|++++|...++++++..+..           +..++..++.+|...|++++|..++++.+
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            88877 7788889999999999999999999998875442           57788899999999999999998877554


Q ss_pred             h
Q 037695          645 N  645 (701)
Q Consensus       645 ~  645 (701)
                      +
T Consensus       314 ~  314 (327)
T 3cv0_A          314 E  314 (327)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=4.2e-16  Score=155.82  Aligned_cols=239  Identities=13%  Similarity=0.122  Sum_probs=55.7

Q ss_pred             HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 037695          188 RAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIK  267 (701)
Q Consensus       188 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  267 (701)
                      +.|++++|.+.++++      +++.+|..|..++.+.|++++|++.|.+      .+|..+|..++..+...|++++|+.
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            344455555555554      2223555555555555555555555533      1344455555555555555555555


Q ss_pred             HHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037695          268 LIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVN  347 (701)
Q Consensus       268 ~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  347 (701)
                      .++..++.  .+++.+.+.++.+|.+.|++.++.++++                              .|+..+|..+..
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------~pn~~a~~~IGd  130 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------------------------------GPNNAHIQQVGD  130 (449)
T ss_dssp             ----------------------------CHHHHTTTTT------------------------------CC----------
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------------------------------CCcHHHHHHHHH
Confidence            44444432  2334444445555555544444333221                              133344555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 037695          348 GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSE  427 (701)
Q Consensus       348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  427 (701)
                      .|...|.+++|..+|..+         ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.
T Consensus       131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l  195 (449)
T 1b89_A          131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL  195 (449)
T ss_dssp             ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence            555555555555555433         23444555555555555555554444      134445555555555555555


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ  491 (701)
Q Consensus       428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  491 (701)
                      |......     +...+.....++..|.+.|.+++|..+++..+... +-....|+-+...|++
T Consensus       196 A~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k  253 (449)
T 1b89_A          196 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred             HHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence            4322221     11222223334444444455555544444444332 3334444444444443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=1.1e-16  Score=159.91  Aligned_cols=282  Identities=11%  Similarity=0.075  Sum_probs=121.9

Q ss_pred             HhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 037695          152 SKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKAL  231 (701)
Q Consensus       152 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  231 (701)
                      -+.|+.++|.++++++      +++.+|..++.++.+.|++++|++.|.+      .+|...|..++..+...|++++|+
T Consensus        14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence            4677889999998877      4556999999999999999999999965      367778999999999999999999


Q ss_pred             HHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 037695          232 RFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDS  311 (701)
Q Consensus       232 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  311 (701)
                      ..++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|...|..+    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            977776654  4567888899999999999999888774       367779999999999999988888888755    


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695          312 NLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSL  391 (701)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  391 (701)
                                                  ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++
T Consensus       149 ----------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~  194 (449)
T 1b89_A          149 ----------------------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR  194 (449)
T ss_dssp             ----------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred             ----------------------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence                                        25888999999999999999999987      27889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 037695          392 EAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE--GKMDGAKKFMQE  469 (701)
Q Consensus       392 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~  469 (701)
                      .|......+     ...+.-...++..|.+.|++++|+.+++..+... +-....|+-+.-.|++-  +++.+..+.|..
T Consensus       195 lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~  268 (449)
T 1b89_A          195 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS  268 (449)
T ss_dssp             HHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred             HHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            996554432     2333445568888999999999999999887665 55566777777666653  334444443331


Q ss_pred             HHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 037695          470 CLNKGCAV------NVVNFTSLIRGFCQKGDLEEALS  500 (701)
Q Consensus       470 ~~~~~~~~------~~~~~~~ll~~~~~~g~~~~A~~  500 (701)
                        +.+++|      +...|..+.-.|...++++.|..
T Consensus       269 --~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          269 --RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             --TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             --HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence              112222      34456666666666666666655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.5e-15  Score=146.57  Aligned_cols=225  Identities=13%  Similarity=0.055  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 037695          445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK--DPD----TVTYT  518 (701)
Q Consensus       445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~  518 (701)
                      ..+..+...+...|++++|..+|+.+.+..  .+...+..+..++...|++++|+..+++..+...  .++    ..+|.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            345566666667777777777777776665  5666677777777777777777777777664221  112    46677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC
Q 037695          519 TIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY  597 (701)
Q Consensus       519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  597 (701)
                      .+..+|...|++++|...|+++...  .|+.       ..+...|++++|...++++....|. ...+..++..+...|+
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            7777777788888888888777764  3443       3455567788888888888877766 5677778888888888


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          598 LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLR  677 (701)
Q Consensus       598 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  677 (701)
                      +++|...++++++..+. ++.++..++..|...|++++|+..++++++.+.. +...+..++.++.+.|++++|...+++
T Consensus       155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            88888888888876533 6777888888888888888888888888873322 357777788888888888888888888


Q ss_pred             HHHcC
Q 037695          678 FVERG  682 (701)
Q Consensus       678 ~~~~~  682 (701)
                      +++..
T Consensus       233 a~~~~  237 (258)
T 3uq3_A          233 ARTKD  237 (258)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            88776

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=1.2e-15  Score=143.01  Aligned_cols=198  Identities=20%  Similarity=0.150  Sum_probs=156.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695          476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV  555 (701)
Q Consensus       476 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  555 (701)
                      |++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.++.. |.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            4566777888888888888888888888887743 3456778888888888888888988888888764 4567788888


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          556 IHRYCQV-----------GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       556 ~~~~~~~-----------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                      ..++...           |++++|+..++++++..|+ ..++..++.+|...|++++|+..|+++++..  .++..+..+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            8888888           9999999999999999998 7889999999999999999999999999988  689999999


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          624 VESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                      +.+|...|++++|+..++++++  ..| +...+..++.++...|++++|+..+++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999999  455 45788889999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.70  E-value=5.1e-15  Score=144.31  Aligned_cols=248  Identities=9%  Similarity=0.015  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 037695          445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD--TVTYTTIID  522 (701)
Q Consensus       445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~  522 (701)
                      ..+......+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|+..+++.......|+  ...|..+..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            345556677778888888888888887763 33555778888888899999999999998887332222  345788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695          523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  601 (701)
                      +|...|++++|...|++..+.. +.+..++..+...|...|++++|+..++++++..|. ...+..++..+...+++++|
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988864 456788899999999999999999999999988887 67777788444455699999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHhcCCHHHH
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGI---PLLAYKVACRMFNRN-LIPD------LKLCKKVSERLILEGKSEEA  671 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A  671 (701)
                      ...++++++..+. +...+..++..+...|+   +++|+..++++.+.. ..|+      ..++..++..|...|++++|
T Consensus       162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999987643 57888888889988888   888999999988732 1233      25788899999999999999


Q ss_pred             HHHHHHHHHcCCCCCchHHHHhhh
Q 037695          672 DTLMLRFVERGHIQPKSEEHLQRQ  695 (701)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~l~~~  695 (701)
                      ..+++++++..|..+.....+...
T Consensus       241 ~~~~~~al~~~p~~~~a~~~l~~~  264 (272)
T 3u4t_A          241 DAAWKNILALDPTNKKAIDGLKMK  264 (272)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHC--
T ss_pred             HHHHHHHHhcCccHHHHHHHhhhh
Confidence            999999999999888777776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6.2e-15  Score=142.29  Aligned_cols=223  Identities=11%  Similarity=0.050  Sum_probs=169.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 037695          410 ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC--AVN----VVNFT  483 (701)
Q Consensus       410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~  483 (701)
                      ..+..+...+...|++++|+..|+++.+..  .+...+..+...+...|++++|...++.+.+...  .++    ...+.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            345556666677777777777777776665  5566677777777777777777777777665421  111    46777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695          484 SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG  563 (701)
Q Consensus       484 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  563 (701)
                      .+...|...|++++|+..|+++...  .|+.       ..+...|++++|...++++.... +.+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence            7888888888888888888888763  4553       34566678888888888888753 345667888888888999


Q ss_pred             CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695          564 RVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACR  642 (701)
Q Consensus       564 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  642 (701)
                      ++++|...+++++...|. ..++..++.++...|++++|...++++++..+ .++..+..++..|...|++++|+..+++
T Consensus       154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999998888877 67888888999999999999999999888763 3678888889999999999999999998


Q ss_pred             HHh
Q 037695          643 MFN  645 (701)
Q Consensus       643 ~~~  645 (701)
                      +.+
T Consensus       233 a~~  235 (258)
T 3uq3_A          233 ART  235 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=9.2e-17  Score=172.99  Aligned_cols=116  Identities=19%  Similarity=0.264  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695          142 IVYYMMLEILSKTKLCQGAKRVLRLMAR---RGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI  218 (701)
Q Consensus       142 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll  218 (701)
                      .+|+++|++|++.|++++|..+|.+|.+   .|+.||..+||+||.+|++.|++++|.++|++|...|+.||..|||++|
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            3455555555555555555555555432   3455555555555555555555555555555555555555555555555


Q ss_pred             HHHHccCC-HhHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 037695          219 HVLVVGNK-LAKALRFLERMQLAGITPNVLTYNCLIKGYC  257 (701)
Q Consensus       219 ~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  257 (701)
                      .++++.|+ .+.|.++|++|.+.|+.||..+|++++.++.
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e  247 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED  247 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence            55555554 2455555555555555555555555554443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=1.3e-16  Score=171.76  Aligned_cols=117  Identities=9%  Similarity=0.043  Sum_probs=67.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          409 AITYSVVMHGLRREGKLSEACDVVREMVK---KGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL  485 (701)
Q Consensus       409 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  485 (701)
                      ..||+++|++|++.|++++|..+|.+|.+   .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            34566666666666666666666655442   355566666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695          486 IRGFCQKGD-LEEALSLLDDMYLCKKDPDTVTYTTIIDALS  525 (701)
Q Consensus       486 l~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~  525 (701)
                      |.++|+.|+ .++|.++|++|...|+.||..+|+.++.++.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e  247 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED  247 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence            666665555 3455556666665556666666655554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.66  E-value=3.1e-14  Score=137.00  Aligned_cols=210  Identities=11%  Similarity=-0.026  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR  558 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  558 (701)
                      ...+..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4456667777777888888888888777643 3456677777888888888888888888887753 4467778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHh--cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 037695          559 YCQVGRVEDLLKLLEKMLS--KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL  635 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  635 (701)
                      +...|++++|.++++++..  ..|. ...+..++.++...|++++|...++++++..+ .+...+..++..|...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888887  5555 56777888888888888888888888887653 367788888888888899999


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695          636 AYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL  692 (701)
Q Consensus       636 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  692 (701)
                      |+..++++.+.... +...+..++..+...|++++|..+++++.+..+..+.....+
T Consensus       194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99888888873332 456777788888888999999999999988887666554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=3.4e-13  Score=131.37  Aligned_cols=225  Identities=12%  Similarity=0.007  Sum_probs=176.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYT  518 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~  518 (701)
                      ++.++..+...+...|++++|...|++..+.   .+...+..+...|..    .+++++|+..|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4556666777777777888888888777763   355667777777777    888888888888887754   667777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695          519 TIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ----VGRVEDLLKLLEKMLSKQKCRTAYNQVIE  590 (701)
Q Consensus       519 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~  590 (701)
                      .+...|..    .+++++|+..|++..+.+   +..++..+...|..    .+++++|++.|+++.+.+ ...++..++.
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~  154 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence            77888888    888888888888888764   67777888888888    888888888888888765 4567777888


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695          591 NLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL  662 (701)
Q Consensus       591 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  662 (701)
                      .|..    .+++++|...++++.+.+   ++..+..++..|..    .+++++|+..++++.+.+   +...+..++.+|
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~  228 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  228 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence            8877    888888888888888753   56777788888888    888888888888888843   256777788888


Q ss_pred             Hh----cCCHHHHHHHHHHHHHcCC
Q 037695          663 IL----EGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       663 ~~----~g~~~~A~~~~~~~~~~~~  683 (701)
                      ..    .+++++|.++|+++.+.++
T Consensus       229 ~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          229 YNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HcCCCcccCHHHHHHHHHHHHHcCC
Confidence            88    8888999999998888875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.65  E-value=7.1e-14  Score=131.64  Aligned_cols=212  Identities=12%  Similarity=-0.021  Sum_probs=152.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      +...+..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+++++.... +.+..++..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            45566667777777777777777777776642 3346677777777777778888887777777653 446677777777


Q ss_pred             HHHhc-CCHHHHHHHHHHHHh--cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          558 RYCQV-GRVEDLLKLLEKMLS--KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       558 ~~~~~-g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      .+... |++++|...++++.+  ..|. ...+..++.++...|++++|...++++++..+ .+...+..++..|...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence            77788 888888888888777  3444 45677777888888888888888888877653 3577777788888888888


Q ss_pred             hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695          634 LLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL  692 (701)
Q Consensus       634 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  692 (701)
                      ++|+..++++.+.....+...+..++..+...|+.++|..+++.+.+..|..+.....+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            88888888887733312456666667777788888888888888887776665554433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=1.9e-14  Score=137.45  Aligned_cols=211  Identities=12%  Similarity=0.050  Sum_probs=143.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      ....|..+...+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+..++..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            44556666677777788888888887777643 3456677777777788888888888888777653 446777777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA  636 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  636 (701)
                      .+...|++++|.++++++.+..|. ...+..++..+...|++++|...++++++..+ .+...+..++..|...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888888777765 66777778888888888888888888877653 3677777888888888888888


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695          637 YKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL  692 (701)
Q Consensus       637 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  692 (701)
                      +..++++.+.... +..++..++.+|...|++++|..+++++++..+..+.....+
T Consensus       179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  233 (243)
T 2q7f_A          179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK  233 (243)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence            8888888774322 456777788888888888888888888888777655554443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.64  E-value=2.1e-11  Score=131.90  Aligned_cols=452  Identities=11%  Similarity=0.059  Sum_probs=256.5

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC---hhHHHHHHH
Q 037695          194 NAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR---IKDAIKLID  270 (701)
Q Consensus       194 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~  270 (701)
                      +.+..|+..+..+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|..-+..-.+.|+   ++.+.++|+
T Consensus        50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            3344444444443 456667777777766666777777777776654 34455566666666666666   777777777


Q ss_pred             HchhCC-CCCCHHHHHHHHHHHHHcCCh----hH----HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC-Cc-CH
Q 037695          271 EMPLKG-CSPDKVSYYTVMGYLCKEKRI----KE----VRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC-IP-DV  339 (701)
Q Consensus       271 ~m~~~g-~~pd~~~~~~ll~~~~~~g~~----~~----a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~  339 (701)
                      +..... .+|+...|...+....+.++.    ++    +.++|+..+.                      ..|. .| +.
T Consensus       128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~----------------------~vG~~d~~s~  185 (679)
T 4e6h_A          128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD----------------------KCAIFEPKSI  185 (679)
T ss_dssp             HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH----------------------HTTTTCSSCH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH----------------------HhCcccccch
Confidence            776552 136666666666554444432    11    2233333332                      2233 33 23


Q ss_pred             HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 037695          340 VTYTAVVNGFC---------RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI  410 (701)
Q Consensus       340 ~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  410 (701)
                      ..|...+....         ..++++.+..+|+.++......-..+|......--..+. ..+.+++.+..         
T Consensus       186 ~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------  255 (679)
T 4e6h_A          186 QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------  255 (679)
T ss_dssp             HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------
Confidence            45555554332         234567788888887752111112233221111000010 01111111100         


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC----C-----------C-----C---HHHHHHHHHHHHhcC-------
Q 037695          411 TYSVVMHGLRREGKLSEACDVVREMVKK--GF----F-----------P-----T---PVEINLLIQSLCREG-------  458 (701)
Q Consensus       411 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~----~-----------~-----~---~~~~~~li~~~~~~g-------  458 (701)
                                  ..++.|...+.++...  ++    +           |     .   ...|...+..--..+       
T Consensus       256 ------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~  323 (679)
T 4e6h_A          256 ------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDL  323 (679)
T ss_dssp             ------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchh
Confidence                        0112222222221110  00    0           0     0   012222222211111       


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          459 KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL-SLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM  537 (701)
Q Consensus       459 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  537 (701)
                      ....+..+|++++.. ++-....|...+..+...|+.++|. .+|++.... ++.+...|...+......|+++.|..+|
T Consensus       324 ~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iy  401 (679)
T 4e6h_A          324 HKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTI  401 (679)
T ss_dssp             HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            123455667777665 4557777777777777778877786 888887753 3445556666777777788888888888


Q ss_pred             HHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-hhHHHHHHHHHHh
Q 037695          538 MKMLSKG---------LVPT------------VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK-QKC-RTAYNQVIENLCS  594 (701)
Q Consensus       538 ~~m~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~l~~~~~~  594 (701)
                      +++++..         -.|+            ..+|...+....+.|..+.|..+|.++.+. .+. ...|...+..-.+
T Consensus       402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~  481 (679)
T 4e6h_A          402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH  481 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            8877531         0131            235777777777888888888888888876 322 4455444444444


Q ss_pred             cC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHH
Q 037695          595 FG-YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD--LKLCKKVSERLILEGKSEEA  671 (701)
Q Consensus       595 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A  671 (701)
                      .+ +.+.|..+|+.+++. .+.++..|...+......|+.+.|..+|++++.....+.  ..++..++..-.+.|+.+.+
T Consensus       482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            44 488888888888886 344677777888877888888888888888888443222  26677777767778888888


Q ss_pred             HHHHHHHHHcCCCCCchHHHHhh
Q 037695          672 DTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      .++.+++.+..|..+.......+
T Consensus       561 ~~v~~R~~~~~P~~~~~~~f~~r  583 (679)
T 4e6h_A          561 RTLEKRFFEKFPEVNKLEEFTNK  583 (679)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHH
Confidence            88888888888876655554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=4.5e-14  Score=143.13  Aligned_cols=233  Identities=11%  Similarity=0.051  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD-LEEALSLLDDMYLCKKDPDTVTYTTIIDA  523 (701)
Q Consensus       445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~  523 (701)
                      ..|..+...+...|++++|+..+++++... +-+...|+.+..++...|+ +++|+..|+++.... +-+...|..+..+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            456667777788888888888888888763 4467888888888989996 999999999988753 3467788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh-cCCHHHH
Q 037695          524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS-FGYLEEA  601 (701)
Q Consensus       524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A  601 (701)
                      +...|++++|+..|++++... +-+...|..+..++.+.|++++|+..++++++.+|. ..+|+.++.+|.. .|..++|
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            999999999999999999864 557888999999999999999999999999999888 7889999999988 6665777


Q ss_pred             -----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC-------
Q 037695          602 -----GKILGKVLRTASKADASTCHVLVESYLNKG--IPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEG-------  666 (701)
Q Consensus       602 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-------  666 (701)
                           +..++++++..+. +...|..++..+...|  ++++|++.+.++ +  ..|+ ...+..++.+|.+.|       
T Consensus       255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence                 5889999887744 7888999999998888  688999998887 4  4444 578888899998874       


Q ss_pred             --CHHHHHHHHHHH-HHcCCC
Q 037695          667 --KSEEADTLMLRF-VERGHI  684 (701)
Q Consensus       667 --~~~~A~~~~~~~-~~~~~~  684 (701)
                        .+++|+++|+++ .+..|.
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~  351 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTI  351 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHHHhCch
Confidence              358999999999 776653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=8.1e-14  Score=135.74  Aligned_cols=243  Identities=14%  Similarity=0.046  Sum_probs=152.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 037695          412 YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV--NVVNFTSLIRGF  489 (701)
Q Consensus       412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~  489 (701)
                      +......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+......+  ....|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3344555566666666666666666553 2233455556666666666666666666666532111  123366666777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          490 CQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLL  569 (701)
Q Consensus       490 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  569 (701)
                      ...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776642 2345667777777777777777777777776652 445666666663334445777788


Q ss_pred             HHHHHHHhcCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCC------HHHHHHHHHHHHhcCChhhHHH
Q 037695          570 KLLEKMLSKQKC-RTAYNQVIENLCSFGY---LEEAGKILGKVLRTAS-KAD------ASTCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       570 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A~~  638 (701)
                      +.|+++++..|. ...+..++.++...|+   +++|...++++++... .|+      ..++..++..|...|++++|+.
T Consensus       163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            877777777776 5666667777777776   6667777777765421 122      2466677777888888888888


Q ss_pred             HHHHHHhCCCCCCH-hhHHHHH
Q 037695          639 VACRMFNRNLIPDL-KLCKKVS  659 (701)
Q Consensus       639 ~~~~~~~~~~~p~~-~~~~~l~  659 (701)
                      .++++++  +.|+. .....+.
T Consensus       243 ~~~~al~--~~p~~~~a~~~l~  262 (272)
T 3u4t_A          243 AWKNILA--LDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHH--HCTTCHHHHHHHC
T ss_pred             HHHHHHh--cCccHHHHHHHhh
Confidence            8888887  44543 4444333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.62  E-value=5.1e-14  Score=131.75  Aligned_cols=198  Identities=18%  Similarity=0.090  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID  522 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  522 (701)
                      ++..+..+...+...|++++|...|+++++. -|.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            3344444444444455555555555444443 12244444445555555555555555555544422 223344444555


Q ss_pred             HHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 037695          523 ALSKN-----------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIEN  591 (701)
Q Consensus       523 ~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~  591 (701)
                      +|...           |++++|+..|++.++.. |-+...+..+..++...|++++|+..|+++++...++..+..++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            55555           66666666666666542 3345566666666666666666666666666555225566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695          592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMF  644 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  644 (701)
                      |...|++++|+..++++++..+. ++..+..++..+...|++++|+..+++..
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            66666666666666666665432 55666666666666666666666666554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=2.7e-14  Score=139.35  Aligned_cols=247  Identities=11%  Similarity=-0.093  Sum_probs=169.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          421 REGKLSEACDVVREMVKKGF---FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEE  497 (701)
Q Consensus       421 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  497 (701)
                      ..|++++|+..++++.+...   +.+..++..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            34567777777777776531   1134566677777777777888877777777652 3467777778888888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  577 (701)
                      |+..|+++.+.. +.+...+..+..+|...|++++|...|+++.+..  |+.......+..+...|++++|...++++..
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            888888877643 3356777778888888888888888888887743  4333333444455667888888888887777


Q ss_pred             cCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhh
Q 037695          578 KQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA---DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKL  654 (701)
Q Consensus       578 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  654 (701)
                      ..|.......++..+...++.++|...+.++++..+..   +...+..++..|...|++++|+..++++..  ..|+.  
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--  248 (275)
T 1xnf_A          173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN--  248 (275)
T ss_dssp             HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--
T ss_pred             cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--
Confidence            76664333446667777788888888888876543211   146778888888999999999999998888  44533  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHH
Q 037695          655 CKKVSERLILEGKSEEADTLM  675 (701)
Q Consensus       655 ~~~l~~~~~~~g~~~~A~~~~  675 (701)
                      +.....++...|++++|++.+
T Consensus       249 ~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHhhHHHH
Confidence            223355777888888888776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=7e-14  Score=146.49  Aligned_cols=221  Identities=14%  Similarity=0.079  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037695          446 EINLLIQSLCREG---KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK----GDLEEALSLLDDMYLCKKDPDTVTYT  518 (701)
Q Consensus       446 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~  518 (701)
                      .+..+...|...|   +.++|...|+...+.| +++...+..+...|...    +++++|+..|++.. .   -+...+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence            4455555555555   5555666665555554 22333334444444333    46666666666654 2   2333444


Q ss_pred             HHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695          519 TIIDA-L--SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG-----RVEDLLKLLEKMLSKQKCRTAYNQVIE  590 (701)
Q Consensus       519 ~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~l~~  590 (701)
                      .|... |  ...+++++|...|++..+.|   ++..+..|...|. .|     ++++|+++|+++.  ...+.++..|+.
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~  326 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQ  326 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            44444 2  34566666666666666655   4555555555555 33     6667777776666  333556666666


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695          591 NLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL  662 (701)
Q Consensus       591 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  662 (701)
                      +|..    ..++++|..+|+++.+.+   ++.....|+.+|..    ..++.+|...++++.+.|.. +.......+...
T Consensus       327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~  402 (452)
T 3e4b_A          327 IYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAP  402 (452)
T ss_dssp             HHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTT
T ss_pred             HHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Confidence            6554    236677777777766644   23344455555553    33666777777766665432 111111111112


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 037695          663 ILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       663 ~~~g~~~~A~~~~~~~~~~  681 (701)
                      ...++..+|..+.++..+.
T Consensus       403 ~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          403 LTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            2234555666666555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=1.5e-13  Score=139.28  Aligned_cols=247  Identities=11%  Similarity=0.046  Sum_probs=199.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695          409 AITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK-MDGAKKFMQECLNKGCAVNVVNFTSLIR  487 (701)
Q Consensus       409 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~  487 (701)
                      ...|..+...+.+.|++++|+..++++++.. +-+...|..+...+...|+ +++|+..|++++... +-+...|+.+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            3456667777788888888888888888774 4567788888888888886 999999998888873 447788888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 037695          488 GFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ-VGRVE  566 (701)
Q Consensus       488 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~  566 (701)
                      ++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999998753 4467888999999999999999999999999865 5578889999999988 66657


Q ss_pred             HH-----HHHHHHHHhcCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------
Q 037695          567 DL-----LKLLEKMLSKQKC-RTAYNQVIENLCSFG--YLEEAGKILGKVLRTASKADASTCHVLVESYLNKG-------  631 (701)
Q Consensus       567 ~A-----~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------  631 (701)
                      +|     +..|++++...|. ..+|..++.+|...|  ++++|+..+.++ +.. +.+...+..++..|.+.|       
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence            77     5889999999988 778999999999888  689999999887 433 457888899999998875       


Q ss_pred             --ChhhHHHHHHHH-HhCCCCCCH-hhHHHHHHHHH
Q 037695          632 --IPLLAYKVACRM-FNRNLIPDL-KLCKKVSERLI  663 (701)
Q Consensus       632 --~~~~A~~~~~~~-~~~~~~p~~-~~~~~l~~~~~  663 (701)
                        .+++|+++++++ .+  +.|.. ..|..++..+.
T Consensus       331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence              258999999999 77  56654 56666655554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.60  E-value=3.3e-12  Score=124.40  Aligned_cols=224  Identities=10%  Similarity=-0.028  Sum_probs=169.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695          408 NAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKMDGAKKFMQECLNKGCAVNVVNFT  483 (701)
Q Consensus       408 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  483 (701)
                      +..++..+...+...|++++|...|++..+.   .+...+..+...|..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4445566666677777777777777777663   245566667777777    777888888887777764   666777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695          484 SLIRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTV  555 (701)
Q Consensus       484 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  555 (701)
                      .+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77777777    888888888888877754   66777777788887    888888888888888765   56667777


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          556 IHRYCQ----VGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       556 ~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      ...|..    .+++++|+..|+++.+.+ ...++..++.+|..    .+++++|...++++++.+   ++..+..++..|
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~  228 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  228 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence            777777    888888888888887764 45677778888888    888888888888888764   366777888888


Q ss_pred             Hh----cCChhhHHHHHHHHHhCC
Q 037695          628 LN----KGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       628 ~~----~g~~~~A~~~~~~~~~~~  647 (701)
                      ..    .|++++|+..++++.+.+
T Consensus       229 ~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          229 YNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HcCCCcccCHHHHHHHHHHHHHcC
Confidence            88    888888888888888843

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=4.4e-13  Score=128.85  Aligned_cols=203  Identities=12%  Similarity=0.015  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037695          445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL  524 (701)
Q Consensus       445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~  524 (701)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            445556666666677777777776666552 3356666677777777777777777777776543 33566677777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695          525 SKNGRVEEATELMMKMLSKGLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG  602 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  602 (701)
                      ...|++++|..+++++...+..| +...+..++..+...|++++|...++++.+..|. ...+..++..+...|++++|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777777632233 4556677777777888888888888887777766 667777778888888888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      ..++++++.. +.+...+..++..+...|++++|...++++.+  ..|+.
T Consensus       196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~  242 (252)
T 2ho1_A          196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGS  242 (252)
T ss_dssp             HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTS
T ss_pred             HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCC
Confidence            8888877654 34666777777788888888888888888877  44444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.60  E-value=5.8e-13  Score=125.31  Aligned_cols=206  Identities=13%  Similarity=0.031  Sum_probs=149.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID  522 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  522 (701)
                      +...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.... +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            34456666666777777777777777766652 3456677777777777788888887777776643 335667777777


Q ss_pred             HHHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHH
Q 037695          523 ALSKN-GRVEEATELMMKMLSKGLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLE  599 (701)
Q Consensus       523 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  599 (701)
                      .|... |++++|..+++++.+.+..| +...+..+...+...|++++|...++++.+..|. ...+..++.++...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            88888 88888888888877732223 3566777778888888888888888888877776 667778888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          600 EAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       600 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      +|...++++++..+..+...+..++..+...|+.+.|..+++.+.+  ..|+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~  215 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYS  215 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCC
Confidence            8888888887765424677777777778888888888888888776  34444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.60  E-value=1.9e-13  Score=143.24  Aligned_cols=334  Identities=12%  Similarity=0.067  Sum_probs=225.0

Q ss_pred             cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CH
Q 037695          319 RIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL---DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNG-----KS  390 (701)
Q Consensus       319 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~  390 (701)
                      ++++|..+|....+.|   +...+..|...|...|+.   ++|..+|+...+.    +...+..|...+...+     ++
T Consensus        18 ~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~   90 (452)
T 3e4b_A           18 DTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH   90 (452)
T ss_dssp             HHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence            3344444444444444   333445555666667777   8999999988854    5556666666555554     78


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----H
Q 037695          391 LEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLS---EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDG----A  463 (701)
Q Consensus       391 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a  463 (701)
                      ++|...|++..+.+.   ...+..+...|...+..+   .+...+......|.   +.....+...|...+.++.    +
T Consensus        91 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a  164 (452)
T 3e4b_A           91 HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDV  164 (452)
T ss_dssp             HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred             HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence            899999999988652   336667777777665543   45555555555553   4456667777777775544    4


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 037695          464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKG---DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN----GRVEEATEL  536 (701)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~  536 (701)
                      ..+++....    .++..+..|...|...|   +.++|+..|++..+.| .++...+..|...|...    +++++|...
T Consensus       165 ~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~  239 (452)
T 3e4b_A          165 ERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL  239 (452)
T ss_dssp             HHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred             HHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            444444433    24448888999999999   9999999999999887 56666667777777655    799999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 037695          537 MMKMLSKGLVPTVVTYRTVIHR-Y--CQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG-----YLEEAGKILGKV  608 (701)
Q Consensus       537 ~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~  608 (701)
                      |++.. .|   ++..+..+... +  ...+++++|+++|++....+ .+.++..++.+|. .|     ++++|...|+++
T Consensus       240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            99988 43   56667777776 4  46899999999999998755 6788888988887 55     999999999998


Q ss_pred             HHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 037695          609 LRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL----EGKSEEADTLMLRFVE  680 (701)
Q Consensus       609 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  680 (701)
                      .    .-++..+..|+..|..    ..++++|+..|+++.+.|   +......++..|..    ..+..+|..+|+++.+
T Consensus       314 a----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          314 V----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             T----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             h----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            7    3477888889888877    348999999999999865   34566678888874    4689999999999999


Q ss_pred             cCC
Q 037695          681 RGH  683 (701)
Q Consensus       681 ~~~  683 (701)
                      .|.
T Consensus       387 ~g~  389 (452)
T 3e4b_A          387 QDT  389 (452)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            884

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.59  E-value=1.1e-13  Score=132.22  Aligned_cols=203  Identities=14%  Similarity=0.131  Sum_probs=142.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID  522 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  522 (701)
                      ....+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            3445566666677777777777777777664 34466777777777888888888888888777643 345677777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695          523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  601 (701)
                      .|...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+..|. ...+..++..+...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            8888888888888888887754 456777888888888888888888888888887776 67778888888888888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD  651 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  651 (701)
                      ...++++++..+ .+..++..++..|...|++++|+..++++.+  ..|+
T Consensus       179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~  225 (243)
T 2q7f_A          179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID--IQPD  225 (243)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTT
T ss_pred             HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcc
Confidence            888888887653 3677888888888888888888888888888  4444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.58  E-value=1.7e-13  Score=133.63  Aligned_cols=228  Identities=10%  Similarity=-0.088  Sum_probs=189.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          456 REGKMDGAKKFMQECLNKGC---AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEE  532 (701)
Q Consensus       456 ~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  532 (701)
                      ..|++++|...++.+.+...   +.+...+..+...+...|++++|+..|+++.+.. +.+..+|..+..+|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            45789999999999988632   2246778889999999999999999999998854 4468899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       533 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      |...|+++.+.. +.+..++..+...|.+.|++++|...++++....|...........+...|++++|...+.+++...
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            999999999864 4568889999999999999999999999999999885555555556677799999999999988865


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP--D-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      + ++...+ .++..+...++.++|+..++++.......  + ...+..++.+|...|++++|..+|+++++..|....
T Consensus       175 ~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          175 D-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             C-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             C-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence            3 344444 47777888899999999999988733211  1 478888999999999999999999999998875443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.58  E-value=7e-14  Score=145.38  Aligned_cols=265  Identities=14%  Similarity=0.108  Sum_probs=165.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHH
Q 037695          418 GLRREGKLSEACDVVREMVKKGFFPTP----VEINLLIQSLCREGKMDGAKKFMQECLNK----G-CAVNVVNFTSLIRG  488 (701)
Q Consensus       418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~  488 (701)
                      .+...|++++|+..|+++++.. +.+.    ..+..+...|...|++++|...++++...    + .+.....+..+...
T Consensus        57 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            3444444444444444444432 1121    23444444444455555555554444332    0 01123445555566


Q ss_pred             HHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC---
Q 037695          489 FCQKGDLEEALSLLDDMYLC----KKD-PDTVTYTTIIDALSKNGR-----------------VEEATELMMKMLSK---  543 (701)
Q Consensus       489 ~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~---  543 (701)
                      |...|++++|...+++....    +-. ....++..+...|...|+                 +++|...+++....   
T Consensus       136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~  215 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD  215 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666655431    001 123356666667777777                 77777776665442   


Q ss_pred             -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          544 -GLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       544 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                       +-.+ ...++..+...|...|++++|...+++++...+.       ..++..++.+|...|++++|...++++++....
T Consensus       216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  295 (411)
T 4a1s_A          216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE  295 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence             1111 2346777788888888999888888888766432       236778888888999999999999888765321


Q ss_pred             -----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          615 -----ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI-PD----LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       615 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                           ....++..++..|...|++++|+..+++++..... ++    ..++..++.+|...|++++|..+++++.+...
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence                 11466778888999999999999999988772110 11    25778889999999999999999999988764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.57  E-value=1.3e-10  Score=125.72  Aligned_cols=447  Identities=9%  Similarity=0.007  Sum_probs=239.8

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHH
Q 037695          124 ALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK---LRNAMYVLS  200 (701)
Q Consensus       124 Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~  200 (701)
                      -+..|+......  |.|..+|..++..+.+.+.++.+..+|+.+... .|.....|...+..-.+.++   ++.+..+|+
T Consensus        51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            343444444443  678999999999999999999999999999987 56788899999999888888   999999999


Q ss_pred             HHHHCC-CCCCHHHHHHHHHHHHccCCH--------hHHHHHHHHHHh-CCC-CCC-hHHHHHHHHHHH---------hc
Q 037695          201 MMQKAA-VAPNLLICNTAIHVLVVGNKL--------AKALRFLERMQL-AGI-TPN-VLTYNCLIKGYC---------DL  259 (701)
Q Consensus       201 ~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~~-~~~~~~li~~~~---------~~  259 (701)
                      +..... .+|++..|..-+....+.++.        +...++|+.... .|. .++ ...|...+....         ..
T Consensus       128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq  207 (679)
T 4e6h_A          128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ  207 (679)
T ss_dssp             HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence            998754 248888998888777665543        334477777554 465 454 467777765543         23


Q ss_pred             CChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHc--CCC-
Q 037695          260 HRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQM--GCI-  336 (701)
Q Consensus       260 g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~--~~~-  336 (701)
                      ++++.+.++|+.+.......-..+|......--..+ ...+.+++....         ..++.|...+.++...  ++. 
T Consensus       208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~---------~~y~~Ar~~~~e~~~~~~~l~r  277 (679)
T 4e6h_A          208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS---------AQYMNARSLYQDWLNITKGLKR  277 (679)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH---------HHHHHHHHHHHHHHHHTTTCCC
T ss_pred             hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh---------HHHHHHHHHHHHHHHHHHhHhh
Confidence            457788999999885311111233332221111111 112333333221         1334444444433211  110 


Q ss_pred             --cC--------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          337 --PD--------------------VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAR  394 (701)
Q Consensus       337 --p~--------------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  394 (701)
                        |.                    ...|...+..--..+.                .....            .....+.
T Consensus       278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~----------------~l~~~------------~~~~Rv~  329 (679)
T 4e6h_A          278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL----------------ELSDD------------LHKARMT  329 (679)
T ss_dssp             CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT----------------CCCHH------------HHHHHHH
T ss_pred             ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc----------------cccch------------hhHHHHH
Confidence              00                    0122222221111110                00000            0011222


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          395 EMINTSEEEWWTPNAITYSVVMHGLRREGKLSEAC-DVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK  473 (701)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  473 (701)
                      .+|++.... ++-....|...+..+...|+.++|. .+|+..... ++.+...+...+....+.|+++.|..+|+.++..
T Consensus       330 ~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          330 YVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            333333332 1223444444444444444444453 555554443 2333333444444444455555555555544432


Q ss_pred             C----------CCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHH
Q 037695          474 G----------CAV-----------NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-GRVE  531 (701)
Q Consensus       474 ~----------~~~-----------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~  531 (701)
                      .          .+.           ...+|...+....+.|+.+.|..+|...++.-..+....|...+..-.+. ++++
T Consensus       408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e  487 (679)
T 4e6h_A          408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTK  487 (679)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHH
Confidence            0          010           12346666666666666777777777766541011223333222222233 3467


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGK  607 (701)
Q Consensus       532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~  607 (701)
                      .|..+|+..++. .+-+...+...+......|+.+.|..+|++++...|+    ...|..++..-.+.|+.+.+..+.++
T Consensus       488 ~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R  566 (679)
T 4e6h_A          488 TACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR  566 (679)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            777777776665 3445555556666666667777777777777666552    34566666666666777777777777


Q ss_pred             HHHcCCC
Q 037695          608 VLRTASK  614 (701)
Q Consensus       608 ~~~~~~~  614 (701)
                      +.+.-+.
T Consensus       567 ~~~~~P~  573 (679)
T 4e6h_A          567 FFEKFPE  573 (679)
T ss_dssp             HHHHSTT
T ss_pred             HHHhCCC
Confidence            7665443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=6e-13  Score=120.98  Aligned_cols=168  Identities=17%  Similarity=0.112  Sum_probs=109.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695          513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN  591 (701)
Q Consensus       513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~  591 (701)
                      +...|..+..+|...|++++|+..|++.++.. |-+..++..+..+|.+.|++++|...+..+....|. ...+..++..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            44556666666666666666666666666643 345666666666677777777777777766666665 5556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037695          592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEA  671 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  671 (701)
                      +...++++.|...+.++.+..+ .+...+..++..|...|++++|+..++++++.++. +..++..++.+|.+.|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence            6667777777777776666543 35666666777777777777777777777663222 346666677777777777777


Q ss_pred             HHHHHHHHHcCC
Q 037695          672 DTLMLRFVERGH  683 (701)
Q Consensus       672 ~~~~~~~~~~~~  683 (701)
                      ++.|+++++..|
T Consensus       161 ~~~~~~al~~~p  172 (184)
T 3vtx_A          161 VKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHTTH
T ss_pred             HHHHHHHHhCCc
Confidence            777777776554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.56  E-value=1.4e-13  Score=142.70  Aligned_cols=303  Identities=15%  Similarity=0.096  Sum_probs=190.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 037695          372 PNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN----AITYSVVMHGLRREGKLSEACDVVREMVKK----GFFP-  442 (701)
Q Consensus       372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~-  442 (701)
                      .....+......+...|++++|...|++..... +.+    ...+..+...+...|++++|...+++....    +..| 
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            345566667777888888888888888887753 222    245667777888888888888888876543    2111 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHH
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCA-VN----VVNFTSLIRGFCQKGD--------------------LEE  497 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~--------------------~~~  497 (701)
                      ...++..+...+...|++++|...++++...... ++    ..++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            2345666777777888888888888877664110 11    3356667777777777                    777


Q ss_pred             HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHH
Q 037695          498 ALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKG-LVPT----VVTYRTVIHRYCQVGRVED  567 (701)
Q Consensus       498 A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~~~~~l~~~~~~~g~~~~  567 (701)
                      |+..+.+....    +..| ...++..+...|...|++++|...+++..+.. -.++    ..++..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            77777765431    1111 12356667777777778888877777766531 0112    2356667777777777777


Q ss_pred             HHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhh
Q 037695          568 LLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK-AD----ASTCHVLVESYLNKGIPLL  635 (701)
Q Consensus       568 A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~  635 (701)
                      |...++++....+.       ..++..++..|...|++++|...++++++.... .+    ..++..++..|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            77777777654221       345666777777777777777777777654221 11    4456667777777777777


Q ss_pred             HHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHH
Q 037695          636 AYKVACRMFNR----NLIPD-LKLCKKVSERLILEGKSEEADTLM  675 (701)
Q Consensus       636 A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  675 (701)
                      |+..++++.+.    +..+. ..++..++..+...|+...+...+
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  370 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI  370 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence            77777776652    11111 255556666666666655444333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.55  E-value=1.5e-13  Score=138.11  Aligned_cols=268  Identities=16%  Similarity=0.126  Sum_probs=177.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 037695          415 VMHGLRREGKLSEACDVVREMVKKGFFPT----PVEINLLIQSLCREGKMDGAKKFMQECLNK----GCA-VNVVNFTSL  485 (701)
Q Consensus       415 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l  485 (701)
                      ....+...|++++|...|+++.+.. +.+    ...+..+...+...|++++|...++++...    +.. .....+..+
T Consensus        11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   89 (338)
T 3ro2_A           11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   89 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            3444555566666666666555542 122    234555555566666666666666554332    111 124455666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 037695          486 IRGFCQKGDLEEALSLLDDMYLCKK-DPD----TVTYTTIIDALSKNGR--------------------VEEATELMMKM  540 (701)
Q Consensus       486 l~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m  540 (701)
                      ...|...|++++|...+++..+... .++    ..++..+...|...|+                    +++|...+++.
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  169 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN  169 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            6777777777777777776553110 112    2356677777777777                    77787777766


Q ss_pred             HhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          541 LSK----GLV-PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       541 ~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      ...    +.. ....++..+...+...|++++|...++++....+.       ..++..++..+...|++++|...++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            542    111 12346777888888999999999999888765322       236778889999999999999999988


Q ss_pred             HHcCCC-CC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          609 LRTASK-AD----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI-PD----LKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       609 ~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      ++.... .+    ..++..++..|...|++++|+..++++.+.... ++    ..++..++.+|...|++++|..+++++
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            765321 12    456788889999999999999999988772111 11    357788999999999999999999999


Q ss_pred             HHcCC
Q 037695          679 VERGH  683 (701)
Q Consensus       679 ~~~~~  683 (701)
                      ++...
T Consensus       330 ~~~~~  334 (338)
T 3ro2_A          330 LEISR  334 (338)
T ss_dssp             HHC--
T ss_pred             HHHHH
Confidence            88764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=1.6e-12  Score=118.06  Aligned_cols=170  Identities=13%  Similarity=0.102  Sum_probs=139.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      ++.+|..+...|...|++++|+..|++..+.. +-+...+..+..+|...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            56678888888888888888888888887743 3356778888888888888888888888887754 456777777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA  636 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  636 (701)
                      .+...++++.|...+.++....|. ..++..++.+|...|++++|+..|+++++..+. ++.+|..++.+|...|++++|
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence            888889999999999888888877 677888888888999999999999998887643 778888889999999999999


Q ss_pred             HHHHHHHHhCCCCCCH
Q 037695          637 YKVACRMFNRNLIPDL  652 (701)
Q Consensus       637 ~~~~~~~~~~~~~p~~  652 (701)
                      +..++++++  +.|+.
T Consensus       161 ~~~~~~al~--~~p~~  174 (184)
T 3vtx_A          161 VKYFKKALE--KEEKK  174 (184)
T ss_dssp             HHHHHHHHH--TTHHH
T ss_pred             HHHHHHHHh--CCccC
Confidence            999999888  55554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=9.3e-12  Score=123.43  Aligned_cols=222  Identities=10%  Similarity=0.006  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695          461 DGAKKFMQECLNKGCAVNVVNFTSLIRGFC-------QKGDL-------EEALSLLDDMYLCKKDPDTVTYTTIIDALSK  526 (701)
Q Consensus       461 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~  526 (701)
                      ++|..+|++++.. .+.+...|..++..+.       ..|++       ++|..+|++....-.+.+...|..++..+..
T Consensus        33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            4555556555554 2345555555555544       23554       6777777777652112234566677777777


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH-hcCCHHHHH
Q 037695          527 NGRVEEATELMMKMLSKGLVPT-VV-TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC-SFGYLEEAG  602 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~~A~  602 (701)
                      .|++++|..+|+++++.  .|+ .. +|..++..+.+.|++++|..+|+++++..|. ...|...+.... ..|++++|.
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777763  332 33 6666777777777777777777777766555 334433333322 257777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN-LIP--DLKLCKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                      .+|+++++..+. ++..|..++..+...|++++|+.+|++++... +.|  ...++..++..+.+.|+.++|..+++++.
T Consensus       190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            777777765433 66677777777777777777777777777742 233  24566666777777777777777777777


Q ss_pred             HcCCCCC
Q 037695          680 ERGHIQP  686 (701)
Q Consensus       680 ~~~~~~~  686 (701)
                      +..|..+
T Consensus       269 ~~~p~~~  275 (308)
T 2ond_A          269 TAFREEY  275 (308)
T ss_dssp             HHTTTTT
T ss_pred             HHccccc
Confidence            7776543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.51  E-value=4.2e-13  Score=139.04  Aligned_cols=300  Identities=16%  Similarity=0.123  Sum_probs=225.4

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-
Q 037695          336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN----TVSYTAFLNGLCHNGKSLEAREMINTSEEE----WWT-  406 (701)
Q Consensus       336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-  406 (701)
                      .+....+......+...|++++|...|+.+..... .+    ...+..+...+...|++++|...+++....    +.. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            44566777788889999999999999999988642 23    356788888999999999999999886542    111 


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HH
Q 037695          407 PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFF-PT----PVEINLLIQSLCREGK--------------------MD  461 (701)
Q Consensus       407 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~  461 (701)
                      ....++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            12456777888899999999999999998876421 22    3367888888999999                    99


Q ss_pred             HHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 037695          462 GAKKFMQECLNK----GC-AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPD----TVTYTTIIDALSKNGRVE  531 (701)
Q Consensus       462 ~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~  531 (701)
                      .|...+......    +. +....++..+...|...|++++|...+++..+... .++    ..++..+..+|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999887553    11 11245677888899999999999999998875211 122    236788889999999999


Q ss_pred             HHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----hhHHHHHHHHHHhcCCHH
Q 037695          532 EATELMMKMLSKGL-VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---C----RTAYNQVIENLCSFGYLE  599 (701)
Q Consensus       532 ~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~  599 (701)
                      +|...+++...... .++    ..++..+...|...|++++|...++++....+   +    ..++..++.+|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            99999998875310 111    55778888999999999999999998877532   2    346778899999999999


Q ss_pred             HHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCChhhH
Q 037695          600 EAGKILGKVLRTASK-----ADASTCHVLVESYLNKGIPLLA  636 (701)
Q Consensus       600 ~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A  636 (701)
                      +|...++++++....     ....++..++..+...|+...+
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  366 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST  366 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence            999999998765211     1234566677777777766543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.51  E-value=1.2e-12  Score=134.64  Aligned_cols=230  Identities=12%  Similarity=0.032  Sum_probs=169.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 037695          450 LIQSLCREGKMDGAKKFMQECLNK----GCAV-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DP-----DTVTYT  518 (701)
Q Consensus       450 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~  518 (701)
                      ....+...|++++|...++++...    +.++ ...++..+...|...|+++.|+..+.+..+... .+     ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            445566778888888888877653    1111 245677778888888888888888887764210 11     134678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CC-hhHHH
Q 037695          519 TIIDALSKNGRVEEATELMMKMLSKGL-VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLS-----KQ-KC-RTAYN  586 (701)
Q Consensus       519 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-p~-~~~~~  586 (701)
                      .+..+|...|++++|...|++..+..- .++    ..++..+..+|...|++++|++.+++++.     .. |. ..++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            888889999999999999888775310 112    24678888999999999999999999987     34 54 56788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCC-HhhHHHH
Q 037695          587 QVIENLCSFGYLEEAGKILGKVLRTAS----KADASTCHVLVESYLNKGI---PLLAYKVACRMFNRNLIPD-LKLCKKV  658 (701)
Q Consensus       587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l  658 (701)
                      .++.+|...|++++|...++++++...    +.....+..+...|...|+   +.+|+.++++.   +..|+ ...+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            899999999999999999999876521    1112335678888999998   77777777665   23333 3677889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          659 SERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       659 ~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      +..|...|++++|..+++++.+..
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999997754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.50  E-value=1.6e-11  Score=121.77  Aligned_cols=217  Identities=13%  Similarity=0.038  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          426 SEACDVVREMVKKGFFPTPVEINLLIQSLC-------REGKM-------DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ  491 (701)
Q Consensus       426 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  491 (701)
                      ++|..+|++.+... +.++..|..++..+.       ..|++       ++|..+|++.+..-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            57777888877753 556677777776665       35775       8999999999884234466788899999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 037695          492 KGDLEEALSLLDDMYLCKKDPD-TV-TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC-QVGRVEDL  568 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A  568 (701)
                      .|++++|..+|++..+.  .|+ .. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999873  454 33 78888899999999999999999998864 445555554444332 36999999


Q ss_pred             HHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695          569 LKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA-SKA--DASTCHVLVESYLNKGIPLLAYKVACRMF  644 (701)
Q Consensus       569 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  644 (701)
                      .++|+++++..|. ...+..++..+.+.|++++|..+|+++++.. .+|  ....|..++..+...|+.+.|..+++++.
T Consensus       189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999988887 7888899999999999999999999999863 233  56788889999999999999999999998


Q ss_pred             hC
Q 037695          645 NR  646 (701)
Q Consensus       645 ~~  646 (701)
                      +.
T Consensus       269 ~~  270 (308)
T 2ond_A          269 TA  270 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            83

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=8.8e-13  Score=139.03  Aligned_cols=193  Identities=11%  Similarity=-0.005  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDL-EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVI  556 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~  556 (701)
                      +...+..+...|...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.  .|+...+..+.
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg  177 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS  177 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence            455555555555666666 66666666655432 223555666666666666666666666666653  34555566666


Q ss_pred             HHHHhc---------CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCC--CC
Q 037695          557 HRYCQV---------GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF--------GYLEEAGKILGKVLRTASK--AD  616 (701)
Q Consensus       557 ~~~~~~---------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--~~  616 (701)
                      ..+...         |++++|+..|+++++..|. ...+..++.+|...        |++++|+..|+++++..+.  .+
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  257 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN  257 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence            666666         6666666666666666665 55666666666666        6666666666666665431  35


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHH
Q 037695          617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLM  675 (701)
Q Consensus       617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  675 (701)
                      +..|..++.+|...|++++|+..++++++  +.|+ ...+..++.++...|++++|++.+
T Consensus       258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          258 PDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666666666666666666666666666  3333 355666666666666666666544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.49  E-value=7.3e-13  Score=137.64  Aligned_cols=273  Identities=14%  Similarity=0.078  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhh
Q 037695          341 TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNT----VSYTAFLNGLCHNGKSLEAREMINTSEEEW-----WTPNAIT  411 (701)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~  411 (701)
                      .+..+...+...|++++|+..|+.+..... .+.    ..+..+...|...|++++|...+++.....     .+....+
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            344455566666777777777776666421 122    345556666666666666666666554320     0112233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 037695          412 YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKG-CAVNVVNFTSLIRGFC  490 (701)
Q Consensus       412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~  490 (701)
                      +..+...|...|++++|...+++.....                               ...+ .+....++..+...|.
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence            4444444455555555555554443320                               0000 0112334455555555


Q ss_pred             hcCC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC
Q 037695          491 QKGD-----------------LEEALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKGL-VP  547 (701)
Q Consensus       491 ~~g~-----------------~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p  547 (701)
                      ..|+                 +++|+..+++....    +..+ ...++..+...|...|++++|...+++...... .+
T Consensus       178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (411)
T 4a1s_A          178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG  257 (411)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence            5666                 66666655554321    1011 123566667777777777777777777665310 01


Q ss_pred             C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 037695          548 T----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK--  614 (701)
Q Consensus       548 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--  614 (701)
                      +    ..++..+...|...|++++|...+++++...+.       ..++..++.+|...|++++|...++++++....  
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            1    236677777888888888888888877665332       346677788888888888888888887654211  


Q ss_pred             ---CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          615 ---ADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       615 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                         ....++..++..|...|++++|+..++++.+
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence               1134677788888888888888888888887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.47  E-value=6.2e-12  Score=118.67  Aligned_cols=209  Identities=10%  Similarity=0.026  Sum_probs=163.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037695          477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVI  556 (701)
Q Consensus       477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~  556 (701)
                      .++..+......+...|++++|+..|++..+....++...+..+..++...|++++|+..|++..+.. +.+..++..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            46678888889999999999999999999886533777777778999999999999999999999864 44577888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 037695          557 HRYCQVGRVEDLLKLLEKMLSKQKC-R-------TAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVES  626 (701)
Q Consensus       557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~  626 (701)
                      .++...|++++|+..++++++..|. .       ..+..++..+...|++++|+..++++++.. +.  +...+..++.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence            9999999999999999999998887 4       457788888899999999999999998763 22  35677888888


Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhh
Q 037695          627 YLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQ  695 (701)
Q Consensus       627 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  695 (701)
                      |...|+     ..++++...+.. +...+...  .....+.+++|+.+++++++..|..+.....+..-
T Consensus       163 ~~~~~~-----~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          163 FYNNGA-----DVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHH-----HHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            876653     344555553222 23333332  34456778999999999999999888777776654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=5.5e-13  Score=132.53  Aligned_cols=236  Identities=15%  Similarity=0.103  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC
Q 037695          446 EINLLIQSLCREGKMDGAKKFMQECLNK-------GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC------KKDP  512 (701)
Q Consensus       446 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p  512 (701)
                      ++..+...+...|++++|..+++++.+.       ..+.....+..+...|...|++++|...+++....      +-.|
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            3444444444445555554444444431       11223344455555555555555555555555432      1111


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 037695          513 -DTVTYTTIIDALSKNGRVEEATELMMKMLSK------GL-VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------  578 (701)
Q Consensus       513 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------  578 (701)
                       ...++..+...|...|++++|..+++++.+.      +- +....++..+...+...|++++|+++++++...      
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence             2344555666666666666666666665543      11 112345666667777777777777777776654      


Q ss_pred             --CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCC-------HHHHHHHHHHHHhcCChhhHHHHHH
Q 037695          579 --QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA-------SKAD-------ASTCHVLVESYLNKGIPLLAYKVAC  641 (701)
Q Consensus       579 --~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~  641 (701)
                        .|. ..++..++.+|...|++++|...++++++..       ..+.       ...+..+...+...+.+.+|...++
T Consensus       189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  268 (311)
T 3nf1_A          189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK  268 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence              222 3456667777777777777777777776531       1111       1122223334445566666777777


Q ss_pred             HHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          642 RMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       642 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ....  ..|+ ..++..++.+|.+.|++++|..+++++++..+
T Consensus       269 ~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          269 ACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             hcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            6665  3333 47788899999999999999999999887643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.46  E-value=2.4e-12  Score=135.75  Aligned_cols=212  Identities=8%  Similarity=-0.024  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKM-DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD  503 (701)
Q Consensus       425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  503 (701)
                      +++++..++...... +.+...+..+...+...|++ ++|...|+++++.. +.+...|..+..+|...|++++|+..|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456666666655442 44677788888888888888 88888888887763 4467788888888999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 037695          504 DMYLCKKDPDTVTYTTIIDALSKN---------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV--------GRVE  566 (701)
Q Consensus       504 ~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~  566 (701)
                      +..+.  .|+...+..+..+|...         |++++|+..|++..+.. +.+...|..+..+|...        |+++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            88874  57778888888888888         89999999999988864 55688888888888888        8899


Q ss_pred             HHHHHHHHHHhcCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695          567 DLLKLLEKMLSKQK---C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACR  642 (701)
Q Consensus       567 ~A~~~~~~~~~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  642 (701)
                      +|+..|+++++..|   . ..++..++.+|...|++++|...|+++++..+. +...+..+..++...|++++|+..+.+
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999998888   4 788889999999999999999999999887644 677888888899999988888876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.46  E-value=9.1e-12  Score=127.92  Aligned_cols=293  Identities=8%  Similarity=-0.024  Sum_probs=208.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCCCChhh
Q 037695          349 FCRVGELDQAKKMLQQMYHH--GC--KPNTVSYTAFLNG--LCHNGKSLEAR-----------EMINTSEEEWWTPNAIT  411 (701)
Q Consensus       349 ~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~  411 (701)
                      +.+.+++++|..+++++...  .+  .++...|-.++..  ....+.+..+.           ..++.+....  .+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            45789999999999988763  22  2233333333332  11223333444           5666654421  11111


Q ss_pred             H------HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---
Q 037695          412 Y------SVVMHGLRREGKLSEACDVVREMVKK----GFFP-TPVEINLLIQSLCREGKMDGAKKFMQECLNKG--C---  475 (701)
Q Consensus       412 ~------~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~---  475 (701)
                      +      ......+...|++++|...+++..+.    +-.+ ...++..+...|...|+++.|...+.+..+.-  .   
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence            1      22556678899999999999998764    1111 23578888999999999999999999887641  1   


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 037695          476 -AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPD----TVTYTTIIDALSKNGRVEEATELMMKMLSK----GL  545 (701)
Q Consensus       476 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~  545 (701)
                       +....+++.+..+|...|++++|+..|++..+... .++    ..++..+..+|...|++++|...+++..+.    +.
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence             11245788888999999999999999998874211 122    247888999999999999999999998872    22


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC
Q 037695          546 -VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-----KC-RTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKA  615 (701)
Q Consensus       546 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~  615 (701)
                       +....++..+...|.+.|++++|...+++++...     |. ...+..+...+...|+   +++|..++++..  ..+.
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~  337 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD  337 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence             3346778899999999999999999999988763     22 2335678888889999   788888887751  1122


Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          616 DASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ....+..++..|...|++++|...++++.+
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345677899999999999999999999877

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.45  E-value=1.9e-12  Score=130.02  Aligned_cols=273  Identities=15%  Similarity=0.103  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 037695          341 TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN----TVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVM  416 (701)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll  416 (701)
                      .+......+...|++++|..+|+++..... .+    ...+..+...+...|++++|...+.+.....            
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------   73 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------   73 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence            344445556666777777777776666421 12    2445555666666666666666665543310            


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 037695          417 HGLRREGKLSEACDVVREMVKKGFF-PTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC-AVN----VVNFTSLIRGFC  490 (701)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~  490 (701)
                                         ...+.. ....++..+...+...|++++|...+++..+... .++    ..++..+...|.
T Consensus        74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence                               000000 0122333444444444555555444444332200 001    224445555555


Q ss_pred             hcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695          491 QKGD--------------------LEEALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKGL  545 (701)
Q Consensus       491 ~~g~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  545 (701)
                      ..|+                    +++|...+++....    +..+ ...++..+...|...|++++|...+++..+...
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            5565                    66666665554321    1011 123566667777777888888777777664310


Q ss_pred             -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          546 -VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       546 -~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                       .++    ..++..+...+...|++++|...++++....+.       ..++..++..+...|++++|...++++++...
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             011    236677777888888888888888877655221       34667778888888888888888888765421


Q ss_pred             C-CC----HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          614 K-AD----ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       614 ~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      . .+    ..++..++..|...|++++|...++++.+
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            1 11    34677788888999999999999988887

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=1.6e-11  Score=111.37  Aligned_cols=169  Identities=17%  Similarity=0.032  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC  593 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~  593 (701)
                      ..|..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+..|. ...+..++..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            345556666777777777777777766543 445667777777777778888888888777777665 566777777777


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037695          594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADT  673 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  673 (701)
                      ..|++++|...++++++.. +.+...+..++..+...|++++|+..++++.+.... +...+..++.++...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888877764 336777777888888888888888888888774322 45677778888888888888888


Q ss_pred             HHHHHHHcCCCCC
Q 037695          674 LMLRFVERGHIQP  686 (701)
Q Consensus       674 ~~~~~~~~~~~~~  686 (701)
                      +++++.+..+..+
T Consensus       166 ~~~~~~~~~~~~~  178 (186)
T 3as5_A          166 HFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCch
Confidence            8888877765444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=6.9e-12  Score=137.41  Aligned_cols=162  Identities=15%  Similarity=0.123  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC  593 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~  593 (701)
                      ..|+.|..+|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|+..|+++++.+|+ ..++..++.+|.
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345555555555555555555555555432 223445555555555555555555555555555554 445555555555


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 037695          594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEAD  672 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  672 (701)
                      ..|++++|++.|+++++..+. +...|..++.+|...|++++|+..|+++++  +.|+ ...+..++.+|...|++++|.
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHH
Confidence            555555555555555554422 445555555555555555555555555555  3333 245555555555555555555


Q ss_pred             HHHHHHHH
Q 037695          673 TLMLRFVE  680 (701)
Q Consensus       673 ~~~~~~~~  680 (701)
                      +.++++++
T Consensus       166 ~~~~kal~  173 (723)
T 4gyw_A          166 ERMKKLVS  173 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.40  E-value=6.8e-11  Score=121.09  Aligned_cols=229  Identities=9%  Similarity=0.005  Sum_probs=169.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 037695          450 LIQSLCREGKMDGAKKFMQECLNKGC-AV----NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DP-----DTVTYT  518 (701)
Q Consensus       450 li~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~  518 (701)
                      ....+...|++++|...++++...-. .+    ...++..+...|...|+++.|+..+.+..+... .+     ...+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34445678888888888888765311 11    245677788888888999999888887764210 11     245677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-hhHHHH
Q 037695          519 TIIDALSKNGRVEEATELMMKMLSK----GLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLS-----KQKC-RTAYNQ  587 (701)
Q Consensus       519 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~-~~~~~~  587 (701)
                      .+..+|...|++++|...|++..+.    +-++ ...++..+..+|...|++++|++.+++++.     ..|. ..++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            8888999999999999999887763    1111 134677888999999999999999999988     5665 567888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASK---A-DASTCHVLVESYLNKGI---PLLAYKVACRMFNRNLIPDL-KLCKKVS  659 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~  659 (701)
                      ++.++.+.|++++|...++++++....   + ....+..+...|...|+   +.+|+..+++   .+..|+. ..+..++
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la  343 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA  343 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence            999999999999999999999876432   1 23445666677778888   7777777765   2233333 6777899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 037695          660 ERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       660 ~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      ..|...|++++|..+|+++++.
T Consensus       344 ~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          344 AVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=3.3e-12  Score=126.85  Aligned_cols=233  Identities=13%  Similarity=0.131  Sum_probs=120.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCC
Q 037695          412 YSVVMHGLRREGKLSEACDVVREMVKK-------GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK------G-CAV  477 (701)
Q Consensus       412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~  477 (701)
                      +..+...+...|++++|..+++++.+.       ..+.....+..+...+...|++++|..+++++...      + .+.
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            444444444445555555444444431       11222334455555555555555555555555432      1 122


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLC------KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSK------G  544 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~  544 (701)
                      ....+..+...|...|++++|...|+++.+.      +..| ....+..+...|...|++++|..+++++...      +
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3445555666666666666666666665542      1112 2344566666777777777777777766653      1


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------C-hh------HHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          545 LVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---------C-RT------AYNQVIENLCSFGYLEEAGKILGK  607 (701)
Q Consensus       545 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---------~-~~------~~~~l~~~~~~~g~~~~A~~~~~~  607 (701)
                      ..| ...++..+...|...|++++|.++++++.+..+         . ..      .+..+...+...+.+.+|...+..
T Consensus       190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  269 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA  269 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence            112 234566667777777777777777777765311         1 11      122223333444555566666666


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +.... +....++..++.+|...|++++|+.+++++++
T Consensus       270 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          270 CKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ----C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            65432 33456677788888888888888888888776

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.35  E-value=4.4e-11  Score=131.04  Aligned_cols=167  Identities=11%  Similarity=0.053  Sum_probs=142.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695          476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV  555 (701)
Q Consensus       476 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  555 (701)
                      |-+...|+.|...|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.. +-+..+|..+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            3456778888888999999999999999888742 2346788888999999999999999999988864 4458889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPL  634 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  634 (701)
                      ..+|.+.|++++|++.|+++++.+|+ ..++..++.+|...|++++|+..|+++++..+. +...+..++.+|...|+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence            99999999999999999999998888 788999999999999999999999999988644 7888889999999999999


Q ss_pred             hHHHHHHHHHh
Q 037695          635 LAYKVACRMFN  645 (701)
Q Consensus       635 ~A~~~~~~~~~  645 (701)
                      +|.+.++++++
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998888766

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=6.6e-11  Score=107.18  Aligned_cols=164  Identities=19%  Similarity=0.140  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR  558 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  558 (701)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3455666777788888888888888876543 3456777888888888888888888888887753 4567778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695          559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY  637 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  637 (701)
                      +...|++++|.+.++++....|. ...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888888887776 6677888888888889999998888888775 346778888888888999999999


Q ss_pred             HHHHHHHh
Q 037695          638 KVACRMFN  645 (701)
Q Consensus       638 ~~~~~~~~  645 (701)
                      ..++++.+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888877

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.35  E-value=1.1e-10  Score=110.02  Aligned_cols=206  Identities=11%  Similarity=-0.027  Sum_probs=163.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695          441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTI  520 (701)
Q Consensus       441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  520 (701)
                      +.++..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|+..|++..+.. +.+...|..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            346788888999999999999999999999988544778888889999999999999999999999853 2346788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHH
Q 037695          521 IDALSKNGRVEEATELMMKMLSKGLVPTV-------VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIE  590 (701)
Q Consensus       521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~  590 (701)
                      ..+|...|++++|...|++..+.. +.+.       ..|..+...+...|++++|++.|+++++..|.   ..++..++.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            999999999999999999999864 4455       55888888999999999999999999999887   467778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHH
Q 037695          591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKV  658 (701)
Q Consensus       591 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l  658 (701)
                      +|...|     ..+++++.... ..+...+....  ....+.+++|+..++++++  +.|+. .+...+
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l  220 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence            886544     45566666654 33455554443  3456778999999999999  55654 443333

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=1.3e-09  Score=111.25  Aligned_cols=198  Identities=11%  Similarity=0.028  Sum_probs=102.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 037695          448 NLLIQSLCREGKMDGAKKFMQECLNK----GCA--V-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD----PDTVT  516 (701)
Q Consensus       448 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~  516 (701)
                      ..+...+...|++++|...+++....    +.+  | ....+..+...+...|++++|...+++.......    ....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            33444445555555555555544332    111  1 1233444555555666666666666655432111    01234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC-----hhHH
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSKGLVP-T-VVTYR----TVIHRYCQVGRVEDLLKLLEKMLSKQKC-----RTAY  585 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~  585 (701)
                      +..+...+...|++++|...+++.....-.+ . .....    ..+..+...|++++|...+++.....|.     ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            5555666666666666666666655421011 1 11111    1223355667777777776666554332     1134


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          586 NQVIENLCSFGYLEEAGKILGKVLRTAS----KADA-STCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..++..+...|++++|...+++++....    .++. ..+..+..++...|++++|...++++..
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5566666677777777777766654321    1112 2455566677777777777777777665

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=8.1e-10  Score=112.82  Aligned_cols=267  Identities=12%  Similarity=0.044  Sum_probs=189.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 037695          416 MHGLRREGKLSEACDVVREMVKKGFFPTPV----EINLLIQSLCREGKMDGAKKFMQECLNKGC-AVN----VVNFTSLI  486 (701)
Q Consensus       416 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll  486 (701)
                      ...+...|++++|...+++........+..    .+..+...+...|+++.|...+++...... ..+    ..++..+.
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344556777777777777766653222222    455566677778888888888887665311 111    23356677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHH
Q 037695          487 RGFCQKGDLEEALSLLDDMYLC----KKD--PD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLV----PTVVTYRTV  555 (701)
Q Consensus       487 ~~~~~~g~~~~A~~~~~~~~~~----~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~l  555 (701)
                      ..+...|++++|...+++....    +..  |. ...+..+...+...|++++|...+++.....-.    ....++..+
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  180 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  180 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence            8899999999999999987642    222  22 345677888999999999999999998764211    124567788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC--CC-hhHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQ--KC-RTAYN-----QVIENLCSFGYLEEAGKILGKVLRTASKAD---ASTCHVLV  624 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~  624 (701)
                      ...+...|++++|...++++....  +. ...+.     ..+..+...|++++|...++++......+.   ...+..++
T Consensus       181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la  260 (373)
T 1hz4_A          181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  260 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence            889999999999999999987652  21 11222     234457789999999999999876543221   33567788


Q ss_pred             HHHHhcCChhhHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          625 ESYLNKGIPLLAYKVACRMFNR----NLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      ..+...|++++|...++++...    +..++. ..+..++.++...|+.++|...++++.+..
T Consensus       261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~  323 (373)
T 1hz4_A          261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  323 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988762    111122 467778889999999999999999887653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.30  E-value=5.7e-10  Score=114.14  Aligned_cols=306  Identities=10%  Similarity=0.033  Sum_probs=211.3

Q ss_pred             CcCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 037695          336 IPDVVTYTAVVNGF--CRVGELDQAKKMLQQMYHH--GCK--PNTVSYTAFLNG--LCHNGKSLEAR---------EMIN  398 (701)
Q Consensus       336 ~p~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~~~li~~--~~~~g~~~~A~---------~~~~  398 (701)
                      .|+..+-+.+-.-|  .+.+++++|..+++++...  .+.  .+...|-.++..  ..-.+.+..+.         ..++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            34444445554454  7889999999999987653  122  233334444332  11112222222         5555


Q ss_pred             HHHhCCCCCCh-h---hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          399 TSEEEWWTPNA-I---TYSVVMHGLRREGKLSEACDVVREMVKKG-FFPT----PVEINLLIQSLCREGKMDGAKKFMQE  469 (701)
Q Consensus       399 ~~~~~~~~~~~-~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~  469 (701)
                      .+.....+.+. .   .+......+...|++++|+..|++..+.. -.++    ..++..+...|...|+++.|...+.+
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            55432111111 1   12234455678999999999999987642 1122    34678888999999999999999998


Q ss_pred             HHHcC--C---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          470 CLNKG--C---A-VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMM  538 (701)
Q Consensus       470 ~~~~~--~---~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~  538 (701)
                      ..+..  .   . ....+++.+..+|...|++++|+..|++..+.    +..+ ...++..+..+|...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            87631  1   1 12456788899999999999999999987652    1111 13467888999999999999999999


Q ss_pred             HHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-hhHHHHHHHHHHhcCC---HHHHHHH
Q 037695          539 KMLS-----KGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-----KC-RTAYNQVIENLCSFGY---LEEAGKI  604 (701)
Q Consensus       539 ~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~---~~~A~~~  604 (701)
                      +...     .. +....++..+...+.+.|++++|...++++....     +. ...+..+...+...|+   +.+|+..
T Consensus       247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9887     43 3347788899999999999999999999998763     22 3455666777778888   8888888


Q ss_pred             HHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          605 LGKVLRTASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       605 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +++.   +.. .....+..++..|...|++++|...++++.+
T Consensus       326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8763   222 2234567889999999999999999998876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.26  E-value=3.5e-10  Score=109.07  Aligned_cols=194  Identities=9%  Similarity=-0.039  Sum_probs=113.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD---TVTYTTIIDALSKNGRVEEATELMMKMLSKGL-V-PTVVTY  552 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-p~~~~~  552 (701)
                      +...+..+...+.+.|++++|+..|+++.+.. +.+   ...+..+..+|...|++++|+..|++.++... . .....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            44455555566666666666666666665532 112   34555566666666666666666666665420 1 113445


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          553 RTVIHRYCQ--------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       553 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                      ..+..++..        .|++++|+..|++++...|+ ......+.......+.       +           ...+..+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-------~-----------~~~~~~l  154 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-------L-----------ARKQYEA  154 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-------H-----------HHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-------H-----------HHHHHHH
Confidence            555555555        66666666666666666554 2222111110000000       0           0113566


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCchHH
Q 037695          624 VESYLNKGIPLLAYKVACRMFNRNLIP--DLKLCKKVSERLILE----------GKSEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                      +..|...|++++|+..++++++..+..  ....+..++.+|...          |++++|+..|+++++..|.++....
T Consensus       155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  233 (261)
T 3qky_A          155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT  233 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence            778888888888888888888843321  135677777788765          8888999999999888887765444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.26  E-value=6e-11  Score=115.73  Aligned_cols=227  Identities=15%  Similarity=0.093  Sum_probs=162.2

Q ss_pred             HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHH
Q 037695          455 CREGKMDGAKKFMQECLNK-------GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC------KKDP-DTVTYTTI  520 (701)
Q Consensus       455 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l  520 (701)
                      ...|+++.|..++++.++.       ..+....++..+...|...|++++|+..++++...      +-.| ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567777777777776552       22335677888999999999999999999998753      2122 34578889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-hhH
Q 037695          521 IDALSKNGRVEEATELMMKMLSK------G-LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--------QKC-RTA  584 (701)
Q Consensus       521 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~  584 (701)
                      ..+|...|++++|..+|.+....      . .+....++..+...|...|++++|..++++++..        .|. ..+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998864      1 1223667888899999999999999999999887        333 467


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH--HhC-C-CCCC-
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTA--------SKADASTCHVLVESYLNKGIPLLAYKVACRM--FNR-N-LIPD-  651 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~-~~p~-  651 (701)
                      +..++.+|...|++++|...++++++..        .......+..+...+...+....+..+....  .+. + ..|+ 
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            8889999999999999999999998751        1222334444444454444444333222111  111 1 1122 


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          652 LKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      ..++..++.+|...|++++|..+++++++.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            367888999999999999999999998864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.24  E-value=1.3e-10  Score=107.55  Aligned_cols=127  Identities=10%  Similarity=0.020  Sum_probs=83.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI-  632 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-  632 (701)
                      +..+|.+.|++++|+..|+++++..|. ..++..++.+|...|++++|+..|+++++..+. ++..+..++..|...|+ 
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence            667777777777777777777777776 667777777777777777777777777776533 66777777777666553 


Q ss_pred             -hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          633 -PLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       633 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                       ...+...+++...  +.|....+...+.++...|++++|+..|+++++..|.
T Consensus       139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence             2334444444432  2222233444566666777778888888777777764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.22  E-value=1e-10  Score=114.77  Aligned_cols=207  Identities=10%  Similarity=-0.001  Sum_probs=150.8

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037695          459 KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC----KKDPD-TVTYTTIIDALSKNGRVEEA  533 (701)
Q Consensus       459 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A  533 (701)
                      ++++|...|..+               ...|...|++++|+..|.+....    |-.+. ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777665               34567788888888888877642    21111 45788888889999999999


Q ss_pred             HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHH
Q 037695          534 TELMMKMLSK----GLVP-TVVTYRTVIHRYCQV-GRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEE  600 (701)
Q Consensus       534 ~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~  600 (701)
                      +..|++.+..    |-.+ -..++..+...|... |++++|+..|++++...|.       ..++..++..|...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9988887753    2110 145778888889886 9999999999998876542       2467888999999999999


Q ss_pred             HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH------hhHHHHHHHHH--hcC
Q 037695          601 AGKILGKVLRTASKADA------STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL------KLCKKVSERLI--LEG  666 (701)
Q Consensus       601 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g  666 (701)
                      |+..++++++..+....      ..+..++.++...|++++|+..++++++  +.|+.      ..+..++..+.  ..+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            99999999987654332      1567788889999999999999999888  55543      13444555554  457


Q ss_pred             CHHHHHHHHHHHHHcC
Q 037695          667 KSEEADTLMLRFVERG  682 (701)
Q Consensus       667 ~~~~A~~~~~~~~~~~  682 (701)
                      ++++|+..|+++.+..
T Consensus       255 ~~~~A~~~~~~~~~l~  270 (292)
T 1qqe_A          255 QLSEHCKEFDNFMRLD  270 (292)
T ss_dssp             THHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHhccCCccH
Confidence            7889998887776544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=1e-10  Score=114.05  Aligned_cols=225  Identities=15%  Similarity=0.112  Sum_probs=160.3

Q ss_pred             HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 037695          420 RREGKLSEACDVVREMVKK-------GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK------GC-AVNVVNFTSL  485 (701)
Q Consensus       420 ~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l  485 (701)
                      ...|++++|...+++.++.       ..+....++..+...+...|++++|...++++.+.      +. +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3567777777777766552       22334567888999999999999999999998765      22 2345678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 037695          486 IRGFCQKGDLEEALSLLDDMYLC------KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSK------GLVP-TVVT  551 (701)
Q Consensus       486 l~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~  551 (701)
                      ...|...|++++|+..|.+....      ...| ...++..+..+|...|++++|..+++++.+.      +-.| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998763      1112 3567888999999999999999999999874      1122 3567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCC-hhHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSK---------QKC-RTAYNQVIENLCSFGY------LEEAGKILGKVLRTASKA  615 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~  615 (701)
                      +..+...|...|++++|..+++++.+.         .+. ...+..+...+...+.      +.++...+..... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888999999999999999999999875         222 2344444444443332      3333333333221 1122


Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          616 DASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ...++..++..|...|++++|..+++++++
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345788899999999999999999999876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=7.5e-09  Score=99.19  Aligned_cols=184  Identities=10%  Similarity=0.021  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PDTVTYTTIIDALSKNGRVEEATELMMKML  541 (701)
Q Consensus       463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  541 (701)
                      |...+++....+ +++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455555555443 334444456666777777777777777776554321 244556666777777777777777777776


Q ss_pred             hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          542 SKGLVP-----TVVTYRTVIHR--YCQVG--RVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       542 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      +.  .|     +..+...++.+  ....|  ++.+|..+|+++....|+......+..++...|++++|...++.+.+..
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            63  45     24444445544  22233  6777777777777666652222333336667777777777777655431


Q ss_pred             ---------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 037695          613 ---------SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLK  653 (701)
Q Consensus       613 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  653 (701)
                               -+.++.++..+|......|+  +|.++++++.+  ..|+..
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp  287 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA  287 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence                     02355666556555555665  66777777777  556554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.19  E-value=9.2e-10  Score=106.09  Aligned_cols=187  Identities=13%  Similarity=0.075  Sum_probs=132.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HH
Q 037695          441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN---VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPD-TV  515 (701)
Q Consensus       441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~  515 (701)
                      +.+...+..+...+.+.|++++|...|+.+.+.. +.+   ...+..+..+|.+.|++++|+..|++..+... .|. ..
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            4466778888889999999999999999998873 323   67788899999999999999999999987432 222 45


Q ss_pred             HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHH
Q 037695          516 TYTTIIDALSK--------NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQ  587 (701)
Q Consensus       516 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  587 (701)
                      .+..+..++..        .|++++|+..|+++++.. |.+......+...              ..+...  ....+..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~--~~~~~~~  153 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK--LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH--HHHHHHH
Confidence            67778888888        999999999999999863 2232222221111              000000  0123556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CChhhHHHHHHHHHh
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVESYLNK----------GIPLLAYKVACRMFN  645 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~  645 (701)
                      ++..|...|++++|+..|+++++..+..  ....+..++.+|...          |++++|+..++++++
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            6777777788888888887777764332  244666677777755          777888888888877

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.18  E-value=7.1e-09  Score=99.34  Aligned_cols=259  Identities=10%  Similarity=0.018  Sum_probs=178.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695          418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEE  497 (701)
Q Consensus       418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  497 (701)
                      -..-.|.+..++.-   ..+............+.+++...|++...         ....|....+..+.. |...+    
T Consensus        22 n~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----   84 (310)
T 3mv2_B           22 QNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----   84 (310)
T ss_dssp             HHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred             HHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence            34456777766652   22222122223344455667777766531         112333333333333 33322    


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL-VPTVVTYRTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      |+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            788888887654 56667777889999999999999999999877652 1357778888999999999999999999999


Q ss_pred             hcCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695          577 SKQK-----CRTAYNQVIEN--LCSFG--YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       577 ~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  647 (701)
                      +..|     ...+...++.+  ....|  ++.+|..+|+++.+.  .|+...-..+..++...|++++|...++.+.+..
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            9888     24455555544  33334  999999999998764  3443333334448999999999999999776631


Q ss_pred             -----C---CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhhhhh
Q 037695          648 -----L---IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVF  698 (701)
Q Consensus       648 -----~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  698 (701)
                           .   .|+ ..++..++......|+  +|.++++++.+..|..|-+...-.....|
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~F  299 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKF  299 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                 1   244 4666577777777887  89999999999999888887777666555

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.17  E-value=9.7e-10  Score=101.68  Aligned_cols=136  Identities=15%  Similarity=-0.006  Sum_probs=107.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC
Q 037695          519 TIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY  597 (701)
Q Consensus       519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  597 (701)
                      .+..+|...|++++|+..|++.++.. |-+...+..+..++...|++++|+..|+++++..|+ ..++..++.+|...|.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            38889999999999999999999864 557889999999999999999999999999999998 7888999988876654


Q ss_pred             --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 037695          598 --LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVS  659 (701)
Q Consensus       598 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  659 (701)
                        .+.+...+.++..  +.|....+..++.++...|++++|+..|+++++  +.|+......+.
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~  197 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence              4455666666542  233334455667788889999999999999998  778765444433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=5.8e-10  Score=109.39  Aligned_cols=205  Identities=11%  Similarity=-0.023  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          462 GAKKFMQECLNKGCAVNVVNFTSLIRGFCQK--G-DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMM  538 (701)
Q Consensus       462 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  538 (701)
                      +|..++.+..+. .+++...| .+    .+.  + ++++|...|.+.               +..|...|++++|...|.
T Consensus         3 ~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~   61 (292)
T 1qqe_A            3 DPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL   61 (292)
T ss_dssp             CHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred             cHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence            456666666655 33222222 22    232  2 488899888877               346788999999999999


Q ss_pred             HHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhc-CCHHHHHHHH
Q 037695          539 KMLSK----GLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSF-GYLEEAGKIL  605 (701)
Q Consensus       539 ~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~-g~~~~A~~~~  605 (701)
                      +....    |-++. ..+|..+..+|.+.|++++|+..+++++...+.       ..++..++.+|... |++++|+..|
T Consensus        62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~  141 (292)
T 1qqe_A           62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY  141 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            88763    31222 568899999999999999999999999876432       34788899999996 9999999999


Q ss_pred             HHHHHcCCCC-C----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH------hhHHHHHHHHHhcCCHHHHHHH
Q 037695          606 GKVLRTASKA-D----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL------KLCKKVSERLILEGKSEEADTL  674 (701)
Q Consensus       606 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~  674 (701)
                      +++++..+.. +    ..++..++..|...|++++|+..++++.+.......      ..+..++.++...|++++|+..
T Consensus       142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  221 (292)
T 1qqe_A          142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART  221 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9998764321 1    356888999999999999999999999994433221      1567788899999999999999


Q ss_pred             HHHHHHcCCCCCc
Q 037695          675 MLRFVERGHIQPK  687 (701)
Q Consensus       675 ~~~~~~~~~~~~~  687 (701)
                      |+++++..|..+.
T Consensus       222 ~~~al~l~p~~~~  234 (292)
T 1qqe_A          222 LQEGQSEDPNFAD  234 (292)
T ss_dssp             HHGGGCC------
T ss_pred             HHHHHhhCCCCCC
Confidence            9999988775554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.15  E-value=2.3e-09  Score=100.55  Aligned_cols=189  Identities=10%  Similarity=0.017  Sum_probs=127.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV---VTY  552 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~  552 (701)
                      +...+..+...+...|++++|+..|+++...... |. ...+..+..+|.+.|++++|+..|+++++.. |-+.   ..+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence            3445566677788888888888888888764221 11 3467777888888888888888888888753 1121   244


Q ss_pred             HHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          553 RTVIHRYCQ------------------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       553 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                      ..+..++..                  .|++++|+..|+++++..|+ ..+..........          ....     
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~----------~~~~-----  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL----------KDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH----------HHHH-----
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH----------HHHH-----
Confidence            445555543                  45677777777777777766 2222211111000          0000     


Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          614 KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL----KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       614 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                         ......++..|.+.|++++|+..++++++.  .|+.    ..+..++.+|.+.|++++|++.++++...+|.+..
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence               011235677899999999999999999994  4442    57888999999999999999999999998875543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.15  E-value=2.5e-09  Score=90.74  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      .|..++..+...|++++|..+++++....|. ...+..++..+...|++++|..+++++++.. +.+...+..++..+..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            3445556666666666666666666655554 4555566666666666666666666666554 2345566666666777


Q ss_pred             cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          630 KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       630 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      .|++++|+..++++.+.... +...+..++.++...|++++|..+++++.+..|
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            77777777777766663221 345566667777777777777777777766554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.13  E-value=2.4e-10  Score=99.41  Aligned_cols=140  Identities=11%  Similarity=-0.024  Sum_probs=77.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695          523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA  601 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  601 (701)
                      .+...|++++|+..+....... +.++..+..+...|.+.|++++|++.|+++++..|+ ..++..++.+|...|++++|
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence            3344455666666665554421 112333445556666666666666666666666665 55666666666666666666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKV-ACRMFNRNLIPD-LKLCKKVSERLILEG  666 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g  666 (701)
                      +..|+++++..+. ++..+..++..|.+.|++++|... ++++++  +.|+ ..+|......+...|
T Consensus        85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence            6666666665432 555666666666666666554443 355665  3343 344444444444444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.12  E-value=1.3e-09  Score=120.15  Aligned_cols=171  Identities=12%  Similarity=-0.043  Sum_probs=97.2

Q ss_pred             HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695          490 CQKGDLEEALSLLDDMY--------LCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ  561 (701)
Q Consensus       490 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  561 (701)
                      ...|++++|++.+++..        +.. +.+...+..+..+|...|++++|+..|+++.+.. +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            44556666666666555        211 2234455555666666666666666666666542 3345556666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 037695          562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVA  640 (701)
Q Consensus       562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  640 (701)
                      .|++++|+..|+++++..|+ ..++..++.+|...|++++ +..|+++++..+. +...|..++.+|...|++++|+..|
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666666666666655 4556666666666666666 6666666665432 5555666666666666666666666


Q ss_pred             HHHHhCCCCCCH-hhHHHHHHHHHhcC
Q 037695          641 CRMFNRNLIPDL-KLCKKVSERLILEG  666 (701)
Q Consensus       641 ~~~~~~~~~p~~-~~~~~l~~~~~~~g  666 (701)
                      +++.+  +.|+. ..+..++.++...|
T Consensus       558 ~~al~--l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          558 DEVPP--TSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred             Hhhcc--cCcccHHHHHHHHHHHHccC
Confidence            66655  44443 44555555554433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=5.6e-09  Score=88.51  Aligned_cols=127  Identities=18%  Similarity=0.188  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF  595 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~  595 (701)
                      |..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++....|. ...+..++..+...
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            4445555555666666666666655542 334555555666666666666666666666655554 44555666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      |++++|...++++++..+ .+...+..++..+...|++++|...++++.+
T Consensus        83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            666666666666665442 2455566666666666666666666666665

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.09  E-value=2.9e-10  Score=98.85  Aligned_cols=131  Identities=13%  Similarity=0.006  Sum_probs=112.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      |...+...|++++|+..+++.....|. +..+..++..|...|++++|+..|+++++..+. ++.+|..++.+|...|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence            445566778999999999999888776 567788999999999999999999999998754 899999999999999999


Q ss_pred             hhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCch
Q 037695          634 LLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTL-MLRFVERGHIQPKS  688 (701)
Q Consensus       634 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~  688 (701)
                      ++|+..|+++++  +.|+ ...+..++.+|.+.|++++|.+. ++++++..|..|..
T Consensus        82 ~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~  136 (150)
T 4ga2_A           82 DKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV  136 (150)
T ss_dssp             HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence            999999999999  5554 58899999999999999877665 69999999877654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.07  E-value=4.2e-09  Score=114.12  Aligned_cols=152  Identities=11%  Similarity=-0.043  Sum_probs=102.1

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKL  571 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  571 (701)
                      .|++++|+..|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            467778888888776642 3346677777778888888888888888887753 44577777788888888888888888


Q ss_pred             HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 037695          572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK---GIPLLAYKVACRMFNR  646 (701)
Q Consensus       572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  646 (701)
                      ++++++..|. ...+..++.+|...|++++|...++++++..+ .+...+..++..+...   |++++|...++++++.
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            8888877776 66777788888888888888888888877653 3667777778888888   8888888888888773

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.07  E-value=9.7e-08  Score=92.60  Aligned_cols=218  Identities=10%  Similarity=0.029  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 037695          460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG--DLEEALSLLDDMYLCKKDPDTVTYTTIIDAL----SKN---GRV  530 (701)
Q Consensus       460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g~~  530 (701)
                      .++|+.++..++..+ |-+...|+.--.++...|  ++++++.+++.+.... +-+..+|+.-...+    ...   +++
T Consensus        49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence            356777777777653 335566777777777777  8888888888888743 33445565544444    444   788


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC------HHHH
Q 037695          531 EEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVE--DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY------LEEA  601 (701)
Q Consensus       531 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A  601 (701)
                      ++++.+++.+.+.. +-+..+|..-..++.+.|.++  +++++++++++.+|. ..+|+.-...+...|+      ++++
T Consensus       127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            99999999999864 567888888888888888888  999999999998887 6788887888877776      8999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHhCC-C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLL-AYKVACRMFNRN-L-IPDLKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      ++.+++++...+. |...|+.+...+.+.|+... ...++.++.+.+ . ..+...+..++.+|.+.|+.++|+++++++
T Consensus       206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            9999999988754 89999999999999887555 445666666532 1 125678888999999999999999999999


Q ss_pred             HHc
Q 037695          679 VER  681 (701)
Q Consensus       679 ~~~  681 (701)
                      .+.
T Consensus       285 ~~~  287 (306)
T 3dra_A          285 KSK  287 (306)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.06  E-value=1.9e-08  Score=93.08  Aligned_cols=177  Identities=12%  Similarity=-0.030  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 037695          497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG----RVEDLLKLL  572 (701)
Q Consensus       497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~  572 (701)
                      +|++.|++..+.|   +...+..|...|...+++++|+..|++..+.|   ++..+..|...|.. +    ++++|+++|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            3555666665543   55566666666666777777777777776654   45566666666665 5    677777777


Q ss_pred             HHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChhhHHHHHHHH
Q 037695          573 EKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKILGKVLRTASK-ADASTCHVLVESYLN----KGIPLLAYKVACRM  643 (701)
Q Consensus       573 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~  643 (701)
                      +++... ..+.++..|+..|..    .+++++|+.+|+++.+.+.. .++..+..|+..|..    .+++++|+..++++
T Consensus        77 ~~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           77 EKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            777543 245666667766665    66777777777777665421 125666677777777    66777777777777


Q ss_pred             HhCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 037695          644 FNRNLIPDLKLCKKVSERLILE-G-----KSEEADTLMLRFVERGH  683 (701)
Q Consensus       644 ~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~  683 (701)
                      .+.  .++...+..++..|... |     ++++|..+|+++.+.|.
T Consensus       156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            773  22344566677666643 2     77888888888877763

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.05  E-value=1.9e-09  Score=96.69  Aligned_cols=156  Identities=13%  Similarity=0.044  Sum_probs=65.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHH-HHhcCCHHH
Q 037695          522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIEN-LCSFGYLEE  600 (701)
Q Consensus       522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~  600 (701)
                      ..+...|++++|...|++..+.. |.+...+..+..++...|++++|+..++++....|++..+..+... +...+...+
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~   92 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESP   92 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccch
Confidence            33444444444444444443321 2233444444444444444444444444444443321111111111 111111122


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          601 AGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFV  679 (701)
Q Consensus       601 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (701)
                      |+..++++++..+. ++..+..++..+...|++++|+..++++++.++.+ +...+..++.++...|+.++|...|++++
T Consensus        93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A           93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            44445554444322 34444555555555555555555555555522221 12344445555555555555555555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.05  E-value=3.7e-07  Score=95.88  Aligned_cols=382  Identities=10%  Similarity=-0.023  Sum_probs=191.7

Q ss_pred             HcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-hhHH
Q 037695          188 RAG-KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR-IKDA  265 (701)
Q Consensus       188 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A  265 (701)
                      +.| ++..|..+|+.+...  -|.              |+++.+..+|++....  .|++..|...+....+.+. .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            345 366677777776542  122              7788888888887764  4677777777766666553 3445


Q ss_pred             HHHHHHchhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHH
Q 037695          266 IKLIDEMPLK-GCSP-DKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYT  343 (701)
Q Consensus       266 ~~~~~~m~~~-g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  343 (701)
                      ..+|+..... |..| +...|...+..+...                   ....++.+.+..+|+.........-...|.
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~-------------------~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~  128 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKI-------------------EDEQTRIEKIRNGYMRALQTPMGSLSELWK  128 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSC-------------------SSHHHHHHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhc-------------------hhhhHHHHHHHHHHHHHHhChhhhHHHHHH
Confidence            5566655432 3222 334444444322110                   011245666777777777631110111122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 037695          344 AVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREG  423 (701)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  423 (701)
                      .... +.+......+..++....                     +.+..|..++..+...-...+...|...+.--...+
T Consensus       129 ~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~  186 (493)
T 2uy1_A          129 DFEN-FELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG  186 (493)
T ss_dssp             HHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred             HHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence            1111 111111222222222111                     122333333333322100012233433333322110


Q ss_pred             --C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695          424 --K-----LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLE  496 (701)
Q Consensus       424 --~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  496 (701)
                        -     .+.+..+|++++... +.++..|...+..+...|+++.|..++++....  |.+...|..    |....+.+
T Consensus       187 ~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~  259 (493)
T 2uy1_A          187 MKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEE  259 (493)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCT
T ss_pred             ccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchh
Confidence              0     234566777777653 455777777777777788888888888888776  334333332    22211111


Q ss_pred             HHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C
Q 037695          497 EALSLLDDMYLCK---------KDP---DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV-G  563 (701)
Q Consensus       497 ~A~~~~~~~~~~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g  563 (701)
                      +.   ++.+.+.-         ..+   ....|...+..+.+.+..+.|..+|++. ... ..+...|...+..-... +
T Consensus       260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~  334 (493)
T 2uy1_A          260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATG  334 (493)
T ss_dssp             HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHC
T ss_pred             HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCC
Confidence            11   22221100         001   1234555555555666777788888777 321 22444444333222222 3


Q ss_pred             CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695          564 RVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACR  642 (701)
Q Consensus       564 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  642 (701)
                      +.+.|..+|+.+++..|+ +..+...+......|+.+.|..+|+++.     .....|...+..-...|+.+.+.+++++
T Consensus       335 d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~  409 (493)
T 2uy1_A          335 SRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ  409 (493)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            577788888877776666 4455556666667777777777777762     2466676776666667777777777776


Q ss_pred             HHh
Q 037695          643 MFN  645 (701)
Q Consensus       643 ~~~  645 (701)
                      +..
T Consensus       410 ~~~  412 (493)
T 2uy1_A          410 KMD  412 (493)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=2.3e-08  Score=92.53  Aligned_cols=173  Identities=10%  Similarity=-0.047  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 037695          463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG----RVEEATELMM  538 (701)
Q Consensus       463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~  538 (701)
                      |...|++..+.|   ++..+..+...|...+++++|+..|++..+.|   +...+..|...|.. +    ++++|..+|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            455555555543   56666667777777777777777777776644   45556666666665 5    7777777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 037695          539 KMLSKGLVPTVVTYRTVIHRYCQ----VGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCS----FGYLEEAGKILGK  607 (701)
Q Consensus       539 ~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~  607 (701)
                      +..+.|   ++..+..|...|..    .+++++|+++|+++...++.   +.++..|+.+|..    .+++++|..+|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            777654   56666677777765    67788888888888777764   6677777777777    6778888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhc-C-----ChhhHHHHHHHHHhCC
Q 037695          608 VLRTASKADASTCHVLVESYLNK-G-----IPLLAYKVACRMFNRN  647 (701)
Q Consensus       608 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~  647 (701)
                      +.+.  ..++..+..|+.+|... |     ++++|+..++++.+.|
T Consensus       155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            8775  23445666777776653 2     7778888887777754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.04  E-value=8.9e-09  Score=100.48  Aligned_cols=166  Identities=12%  Similarity=0.003  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH-HHHHHHH
Q 037695          513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA-YNQVIEN  591 (701)
Q Consensus       513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~  591 (701)
                      +...+..+...+...|++++|...|++..... +-+...+..+...+.+.|++++|...++++....|+... .......
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            34455566666667777777777777776653 345666667777777777777777777777666665322 2223333


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHH
Q 037695          592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEE  670 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~  670 (701)
                      +...++.++|+..++++++..+ .+...+..++..|...|++++|+..+.++++.++.. +...+..++.+|...|+.++
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            5556666667777777776653 366667777777777777777777777777733221 13566677777777777777


Q ss_pred             HHHHHHHHHH
Q 037695          671 ADTLMLRFVE  680 (701)
Q Consensus       671 A~~~~~~~~~  680 (701)
                      |...|++.+.
T Consensus       274 a~~~~r~al~  283 (287)
T 3qou_A          274 LASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.02  E-value=2.3e-08  Score=93.69  Aligned_cols=188  Identities=15%  Similarity=0.052  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH-HHHH
Q 037695          443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV--NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PDT-VTYT  518 (701)
Q Consensus       443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~-~~~~  518 (701)
                      ++..+..+...+...|++++|...|+.+.......  ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            44566677788999999999999999998863221  1356778899999999999999999999874322 111 2455


Q ss_pred             HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          519 TIIDALSK------------------NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       519 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      .+..++..                  .|++++|+..|+++++.. |-+...+........          +....     
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~~-----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHHH-----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHHH-----
Confidence            55555554                  578999999999999863 323333322111100          00000     


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695          581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  647 (701)
                       ......++..|.+.|++++|+..|+++++..+...  ...+..++.+|.+.|++++|++.++.+...+
T Consensus       147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence             11223567778888888888888888887654321  2467778888888888888888888887743

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.01  E-value=3.5e-09  Score=94.95  Aligned_cols=161  Identities=16%  Similarity=0.079  Sum_probs=120.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 037695          482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR-YC  560 (701)
Q Consensus       482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~  560 (701)
                      +..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++.....  |++..+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            4456667778888888888888776532 3356677888888888888888888888876643  355443332222 22


Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHH
Q 037695          561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~  638 (701)
                      ..+....|+..++++++..|. ...+..++.++...|++++|...++++++..+.+ +...+..++..+...|+.++|..
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            223344578889999988887 7888889999999999999999999998876543 46678889999999999999999


Q ss_pred             HHHHHHh
Q 037695          639 VACRMFN  645 (701)
Q Consensus       639 ~~~~~~~  645 (701)
                      .|++.+.
T Consensus       166 ~y~~al~  172 (176)
T 2r5s_A          166 KYRRQLY  172 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.01  E-value=4.6e-07  Score=95.18  Aligned_cols=344  Identities=8%  Similarity=-0.098  Sum_probs=213.0

Q ss_pred             CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCCH
Q 037695          318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGE-LDQAKKMLQQMYHH-GC-KPNTVSYTAFLNGLC----HNGKS  390 (701)
Q Consensus       318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g~~  390 (701)
                      |+++.+..+|+.....  .|+...|...+....+.+. .+....+|+..+.. |. ..+...|...+..+.    ..++.
T Consensus        28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            4566666666666653  4788899888887777663 45667788877763 43 236677777776544    34678


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          391 LEAREMINTSEEEWWTPNAITYSVVMHGLR-------------REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       391 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  457 (701)
                      +.+.++|++........-...|......-.             ..+.+..|..+++.+...--..+...|...+..-...
T Consensus       106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            889999999987321111112221111100             0112233444444443210011333454444432221


Q ss_pred             --CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695          458 --GK-----MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRV  530 (701)
Q Consensus       458 --g~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  530 (701)
                        +-     ...+..+|++++.. ++.+...|...+..+.+.|+++.|..+|++....  +.+...|.    .|......
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~  258 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE  258 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred             CccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence              11     34577899998886 4667888999999899999999999999999986  33333332    22222111


Q ss_pred             HHHHHHHHHHHhC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHhcC-
Q 037695          531 EEATELMMKMLSK---------GLVP---TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCSFG-  596 (701)
Q Consensus       531 ~~A~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-  596 (701)
                      ++.   ++.+.+.         +..+   ....|...+..+.+.+..+.|..+|+++ ...+ ....|...+..-...+ 
T Consensus       259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~  334 (493)
T 2uy1_A          259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG  334 (493)
T ss_dssp             THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred             hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence            121   2222211         0011   1345666777777788999999999999 3222 2344443333333334 


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037695          597 YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLML  676 (701)
Q Consensus       597 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  676 (701)
                      +.+.|..+|+.+++.- +.++..|...+......|+.+.|..+|+++.+     ....+...+..-...|+.+.+..+++
T Consensus       335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~  408 (493)
T 2uy1_A          335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVD  408 (493)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6999999999999864 33566677788888899999999999998732     46777777776677899999999998


Q ss_pred             HHHH
Q 037695          677 RFVE  680 (701)
Q Consensus       677 ~~~~  680 (701)
                      ++.+
T Consensus       409 ~~~~  412 (493)
T 2uy1_A          409 QKMD  412 (493)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.00  E-value=2.3e-09  Score=118.25  Aligned_cols=159  Identities=10%  Similarity=-0.041  Sum_probs=141.0

Q ss_pred             HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695          525 SKNGRVEEATELMMKML--------SKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF  595 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~  595 (701)
                      ...|++++|++.+++..        +.. +.+...+..+..++.+.|++++|+..|+++++.+|+ ..++..++.+|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            67899999999999998        432 556788899999999999999999999999999887 78999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHH
Q 037695          596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTL  674 (701)
Q Consensus       596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  674 (701)
                      |++++|+..|+++++..+. +...+..++.+|...|++++ +..|+++++  +.| +...+..++.+|.+.|++++|+..
T Consensus       481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999998754 77888999999999999999 999999999  445 458889999999999999999999


Q ss_pred             HHHHHHcCCCCCch
Q 037695          675 MLRFVERGHIQPKS  688 (701)
Q Consensus       675 ~~~~~~~~~~~~~~  688 (701)
                      |+++++.++..+..
T Consensus       557 ~~~al~l~P~~~~a  570 (681)
T 2pzi_A          557 LDEVPPTSRHFTTA  570 (681)
T ss_dssp             HHTSCTTSTTHHHH
T ss_pred             HHhhcccCcccHHH
Confidence            99999887654443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.99  E-value=6.9e-09  Score=86.86  Aligned_cols=108  Identities=8%  Similarity=-0.058  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSE  660 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~  660 (701)
                      ...+...+..|.+.|++++|+..|+++++..+ .++..|..++.+|...|++++|+..++++++  +.|+ ...+..++.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~   89 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHH
Confidence            34555666666666666666666666666553 2566666666666667777777777666666  3333 456666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695          661 RLILEGKSEEADTLMLRFVERGHIQPKSEEHL  692 (701)
Q Consensus       661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  692 (701)
                      +|...|++++|++.|+++++..|..+.....|
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            77777777777777777777666555544444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.98  E-value=5e-09  Score=103.54  Aligned_cols=222  Identities=14%  Similarity=0.049  Sum_probs=158.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695          422 EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR-EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALS  500 (701)
Q Consensus       422 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~  500 (701)
                      .|++++|.+++++..+.. +.          .+.. .++++.|...|..+               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            467778888888776642 11          1222 57777777776654               456788899999999


Q ss_pred             HHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 037695          501 LLDDMYLCKK---DP--DTVTYTTIIDALSKNGRVEEATELMMKMLSK----GLVPT--VVTYRTVIHRYCQVGRVEDLL  569 (701)
Q Consensus       501 ~~~~~~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~  569 (701)
                      .|.+......   .+  -..+|+.+..+|...|++++|+..|++.+..    | .+.  ..++..+...|.. |++++|+
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            9988764211   11  1347888889999999999999999987753    2 121  4567788888888 9999999


Q ss_pred             HHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCChhhHH
Q 037695          570 KLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-D----ASTCHVLVESYLNKGIPLLAY  637 (701)
Q Consensus       570 ~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~  637 (701)
                      ..|++++...+.       ..++..++..|...|++++|+..|+++++..... +    ...+..++..+...|++++|+
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999998876432       3567888999999999999999999998764322 2    235666777888889999999


Q ss_pred             HHHHHHHhCCCCC-CH---hhHHHHHHHHHhcCCHHHHHH
Q 037695          638 KVACRMFNRNLIP-DL---KLCKKVSERLILEGKSEEADT  673 (701)
Q Consensus       638 ~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~  673 (701)
                      ..+++.+ ..... +.   .....++..+ ..|+.+.+..
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            9999998 43221 11   2344555544 5778776666

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.97  E-value=1e-09  Score=94.82  Aligned_cols=108  Identities=10%  Similarity=-0.046  Sum_probs=77.7

Q ss_pred             HHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-H
Q 037695          575 MLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-L  652 (701)
Q Consensus       575 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~  652 (701)
                      ++...|+ ...+..++..+...|++++|+..|+++++..+. ++..|..++.+|...|++++|+..|+++++  +.|+ .
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~  104 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDY  104 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCC
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCc
Confidence            3344555 456677777777778888888888777776533 677777777778888888888888887777  4443 4


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          653 KLCKKVSERLILEGKSEEADTLMLRFVERGHIQ  685 (701)
Q Consensus       653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  685 (701)
                      ..+..++.+|.+.|++++|+..|+++++..+.+
T Consensus       105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            667777777888888888888888887776543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.97  E-value=4.4e-09  Score=90.99  Aligned_cols=114  Identities=14%  Similarity=-0.010  Sum_probs=61.1

Q ss_pred             HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695          572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP  650 (701)
Q Consensus       572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  650 (701)
                      |++++...|. ...+..++..+...|++++|+..|++++...+ .++..|..++.+|...|++++|+..|++++.  +.|
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p   86 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDI   86 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HST
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCC
Confidence            4444444443 34445555555555555555555555555442 2555555555555555666666666655555  223


Q ss_pred             C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695          651 D-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS  688 (701)
Q Consensus       651 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  688 (701)
                      + ...+..++.+|...|++++|+..|+++++..+..|..
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            2 3455555555556666666666666665555544443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.95  E-value=2.9e-07  Score=89.26  Aligned_cols=219  Identities=7%  Similarity=-0.040  Sum_probs=168.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 037695          423 GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG--KMDGAKKFMQECLNKGCAVNVVNFTSLIRGF----CQK---G  493 (701)
Q Consensus       423 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g  493 (701)
                      ...++|+.+++.++... +-+...|+.--..+...+  ++++++.++..++... +-+..+|+.-...+    ...   +
T Consensus        47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence            34467888888887764 445566777777777777  8888888888887763 33556666554444    444   7


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------H
Q 037695          494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVE--EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR------V  565 (701)
Q Consensus       494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~  565 (701)
                      ++++++.+++.+.+.. +.+...|+.-..++.+.|.++  ++++.++++++.. +-|...|+.-...+...+.      +
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            8899999999998754 557788888888888888888  9999999999875 5577788777777777776      8


Q ss_pred             HHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 037695          566 EDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEE-AGKILGKVLRTA--SKADASTCHVLVESYLNKGIPLLAYKVAC  641 (701)
Q Consensus       566 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  641 (701)
                      +++++++++++..+|. ..+|+.+...+.+.|+..+ +..+..++.+.+  ...++..+..++..|.+.|+.++|+++++
T Consensus       203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            9999999999999988 7889999999988888444 556777666543  23477888999999999999999999999


Q ss_pred             HHHh
Q 037695          642 RMFN  645 (701)
Q Consensus       642 ~~~~  645 (701)
                      .+.+
T Consensus       283 ~l~~  286 (306)
T 3dra_A          283 LLKS  286 (306)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9886

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.95  E-value=2e-08  Score=97.90  Aligned_cols=165  Identities=16%  Similarity=0.075  Sum_probs=109.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-H
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV-I  556 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~  556 (701)
                      +...+..+...+...|++++|...|++..... +.+...+..+..+|...|++++|..+++++...  .|+....... .
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence            44455556666667777777777777766532 234556666777777777777777777776654  3444332222 2


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChh
Q 037695          557 HRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPL  634 (701)
Q Consensus       557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~  634 (701)
                      ..+...++.++|+..+++++...|+ ..++..++..|...|++++|...+.++++..+.. +...+..++..|...|+.+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            2355666677777777777777776 6677777777777888888888887777765432 2566777777777788777


Q ss_pred             hHHHHHHHHHh
Q 037695          635 LAYKVACRMFN  645 (701)
Q Consensus       635 ~A~~~~~~~~~  645 (701)
                      +|...|++.+.
T Consensus       273 ~a~~~~r~al~  283 (287)
T 3qou_A          273 ALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            77777776554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=1.5e-08  Score=99.97  Aligned_cols=224  Identities=11%  Similarity=0.023  Sum_probs=160.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR-EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAK  464 (701)
Q Consensus       386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  464 (701)
                      ..|++++|.+++++..+..  +.         .+.+ .++++.|...|..+               ...|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            3577889999998877642  11         1222 57888888888765               44677889999999


Q ss_pred             HHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHH
Q 037695          465 KFMQECLNKG----CAV-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK---KDPD--TVTYTTIIDALSKNGRVEEAT  534 (701)
Q Consensus       465 ~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~  534 (701)
                      ..|.++....    .+. -..+|+.+..+|...|++++|+..|++.....   -.+.  ..++..+..+|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            9998876541    111 14578888899999999999999999876421   1222  3567888888988 9999999


Q ss_pred             HHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHH
Q 037695          535 ELMMKMLSKGL---VP--TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAG  602 (701)
Q Consensus       535 ~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~  602 (701)
                      ..|++.+....   .+  ...++..+...|.+.|++++|+..|++++...|.       ...+..++.++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999876410   11  1457888899999999999999999999876432       225566777788889999999


Q ss_pred             HHHHHHHHcCCCC-CH---HHHHHHHHHHHhcCChhhHHH
Q 037695          603 KILGKVLRTASKA-DA---STCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       603 ~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~A~~  638 (701)
                      ..|++++ ..+.. +.   .....++.++ ..|+.+.+..
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            9999998 54321 11   2234445544 5677655444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=2.8e-08  Score=107.59  Aligned_cols=155  Identities=8%  Similarity=-0.046  Sum_probs=121.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATEL  536 (701)
Q Consensus       457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  536 (701)
                      .|++++|...++++.+. .+.+...+..+...|...|++++|...|++..+.. +.+...+..+..+|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47889999999998876 34467889999999999999999999999998853 34578899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 037695          537 MMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF---GYLEEAGKILGKVLRTA  612 (701)
Q Consensus       537 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~  612 (701)
                      |++..+.. +.+...+..+..+|.+.|++++|.+.++++.+..|. ..++..++.++...   |++++|...++++++.+
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            99999864 556888999999999999999999999999999887 77888999999999   99999999999999887


Q ss_pred             CC
Q 037695          613 SK  614 (701)
Q Consensus       613 ~~  614 (701)
                      +.
T Consensus       159 p~  160 (568)
T 2vsy_A          159 VG  160 (568)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.89  E-value=4.7e-08  Score=81.72  Aligned_cols=107  Identities=10%  Similarity=0.004  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL  628 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  628 (701)
                      ..+......|.+.|++++|++.|+++++..|. ..++..++.+|...|++++|+..++++++..+. +...|..++.+|.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence            44566667777777777777777777777776 667777777777777777777777777776533 6677777777777


Q ss_pred             hcCChhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695          629 NKGIPLLAYKVACRMFNRNLIPDL-KLCKKVS  659 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~  659 (701)
                      ..|++++|+..|+++++  +.|+. .....+.
T Consensus        93 ~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~  122 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQ--VDPSNEEAREGVR  122 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH--HCcCCHHHHHHHH
Confidence            77777777777777777  44543 4444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.86  E-value=1.6e-07  Score=87.04  Aligned_cols=122  Identities=12%  Similarity=-0.052  Sum_probs=62.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL  598 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  598 (701)
                      +...+...|++++|...|++.    +.|+..++..+...+...|++++|+..+++++...|. ..++..++.+|...|++
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence            334444555555555555443    2334445555555555555555555555555554444 44455555555555555


Q ss_pred             HHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          599 EEAGKILGKVLRTASKA---------------DASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ++|+..++++++..+..               ....+..++.+|...|++++|+..++++.+
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            55555555555433211               114455555555555666666655555555

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.85  E-value=6.5e-07  Score=87.59  Aligned_cols=162  Identities=15%  Similarity=0.032  Sum_probs=108.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKG-LVPTV----VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQ  587 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~  587 (701)
                      .+..+...|++++|..++++..+.. ..|+.    ..+..+...+...|++++|+..+++++...+.       ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3556677788888888887777642 11221    12334555666677888888888888764222       225777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HhhHH
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRT-----ASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFNR----NLIPD-LKLCK  656 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~  656 (701)
                      ++.+|...|++++|...++++++.     +.. ....++..++..|.+.|++++|+..++++++.    +..+. ..++.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888888888888888888887742     111 11246777888888888888888888877762    12222 46778


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHHc
Q 037695          657 KVSERLILEGK-SEEADTLMLRFVER  681 (701)
Q Consensus       657 ~l~~~~~~~g~-~~~A~~~~~~~~~~  681 (701)
                      .++.+|.+.|+ +++|.+.++++++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            88888888884 68888888888653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.85  E-value=4e-08  Score=88.04  Aligned_cols=125  Identities=8%  Similarity=0.033  Sum_probs=68.8

Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--hhH
Q 037695          561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGIP--LLA  636 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A  636 (701)
                      ..|++++|+..+++++...|. ...+..++.+|...|++++|+..++++++..+. ++..+..++.+ |...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence            345555666666665555554 455555666666666666666666666554422 45555555555 5556665  666


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          637 YKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       637 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      +..++++++.+.. +...+..++.+|...|++++|...|+++++..+..+.
T Consensus       101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            6666666653221 2355555666666666666666666666666655444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.83  E-value=1.3e-07  Score=83.33  Aligned_cols=129  Identities=9%  Similarity=-0.052  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL  628 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  628 (701)
                      ..+..+...+...|++++|...|++++...|. ..++..++.++...|++++|...++++++..+ .+...+..++.++.
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~   92 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            44566667777778888888888877777765 66777777778888888888888888777653 36777777888888


Q ss_pred             hcCChhhHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          629 NKGIPLLAYKVACRMFNRNLIPDLKLCK--KVSERLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~  680 (701)
                      ..|++++|+..++++.+.+.. +...+.  ..+..+...|++++|+..+.+..+
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            888888888888888773322 233442  333346677888888888876644

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.82  E-value=2.8e-08  Score=85.30  Aligned_cols=94  Identities=13%  Similarity=-0.038  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      .+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..|+++++..+. ++..+..++.+|..
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            3444445555555555555555555555554 445555555555555555555555555554422 44444555555555


Q ss_pred             cCChhhHHHHHHHHHh
Q 037695          630 KGIPLLAYKVACRMFN  645 (701)
Q Consensus       630 ~g~~~~A~~~~~~~~~  645 (701)
                      .|++++|+..++++++
T Consensus        99 ~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           99 LGDLDGAESGFYSARA  114 (142)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.82  E-value=7.3e-08  Score=83.13  Aligned_cols=102  Identities=11%  Similarity=0.018  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      ...+..+...+.+.|++++|+..|++++...|. +..|..++.+|...|++++|+..|+++++..+. ++..|..++.+|
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~  114 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence            445666777777888888888888888877776 667777888888888888888888888777644 667777788888


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCCHh
Q 037695          628 LNKGIPLLAYKVACRMFNRNLIPDLK  653 (701)
Q Consensus       628 ~~~g~~~~A~~~~~~~~~~~~~p~~~  653 (701)
                      ...|++++|+..|+++++  +.|+..
T Consensus       115 ~~lg~~~eA~~~~~~al~--l~~~~~  138 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQ--HSNDEK  138 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred             HHcCCHHHHHHHHHHHHH--hCCCHH
Confidence            888888888888888877  455554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.81  E-value=3.6e-07  Score=89.40  Aligned_cols=160  Identities=14%  Similarity=0.008  Sum_probs=85.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHH
Q 037695          520 IIDALSKNGRVEEATELMMKMLSKGLVPTV------VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYN  586 (701)
Q Consensus       520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~  586 (701)
                      .+..+...|++++|...+.+..+.. +...      ..+..+...+...|++++|+..+++++...+.       ..+++
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            3444455555555555555544432 1111      11223344455556666666666666543211       23556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC----CCCC-HhhH
Q 037695          587 QVIENLCSFGYLEEAGKILGKVLR---TASK-A--DASTCHVLVESYLNKGIPLLAYKVACRMFNRN----LIPD-LKLC  655 (701)
Q Consensus       587 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~  655 (701)
                      .++..|...|++++|...++++++   .... +  ...++..++..|...|++++|+.+++++++..    .... ..++
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            666666666666666666666652   1111 0  11456666666777777777777766665521    0111 3566


Q ss_pred             HHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037695          656 KKVSERLILEGKSEEA-DTLMLRFVE  680 (701)
Q Consensus       656 ~~l~~~~~~~g~~~~A-~~~~~~~~~  680 (701)
                      ..++.+|.+.|++++| ..+++++.+
T Consensus       240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6677777777777777 666666543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.80  E-value=3.7e-06  Score=82.27  Aligned_cols=221  Identities=11%  Similarity=0.065  Sum_probs=152.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG-DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-G-RVEEAT  534 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~  534 (701)
                      +..++|+.++..++..+ +-+...|+.--..+...| .+++++.+++.+.... +.+..+|+.-..++... + ++++++
T Consensus        68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence            33456777777776653 335556666666666667 4888888888887754 34566677666666665 6 778888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC-------H
Q 037695          535 ELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVE--------DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY-------L  598 (701)
Q Consensus       535 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-------~  598 (701)
                      .+++++.+.. +-+..+|..-..++.+.|.++        +++++++++++.+|. ..+|+.....+.+.++       +
T Consensus       146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~  224 (349)
T 3q7a_A          146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL  224 (349)
T ss_dssp             HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence            8888888764 456777766666666555555        888888888888887 6788888888877776       6


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--------------------hhHHHHHHHHHhCC-----CCCCHh
Q 037695          599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIP--------------------LLAYKVACRMFNRN-----LIPDLK  653 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~p~~~  653 (701)
                      +++++.+++++...+. |...|+.+-..+.+.|+.                    .........+....     -.+...
T Consensus       225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  303 (349)
T 3q7a_A          225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL  303 (349)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence            8888888888887644 888888887777777764                    12222222222211     024567


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          654 LCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      ....++++|...|+.++|.++++.+.+..
T Consensus       304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~  332 (349)
T 3q7a_A          304 ALEYLADSFIEQNRVDDAAKVFEKLSSEY  332 (349)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence            88889999999999999999999987554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.80  E-value=3.3e-07  Score=84.81  Aligned_cols=128  Identities=15%  Similarity=0.079  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695          482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ  561 (701)
Q Consensus       482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  561 (701)
                      +..+...+...|++++|+..|++.    +.|+...|..+..+|...|++++|...|++..... +.+...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            445566777788888888888776    35677788888888888888888888888887754 4567778888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-h----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          562 VGRVEDLLKLLEKMLSKQKC-R----------------TAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       562 ~g~~~~A~~~~~~~~~~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      .|++++|++.|+++.+..|. .                .++..++.+|...|++++|...++++++..+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            88888888888888876554 2                57778888888888888888888888876543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.79  E-value=1.2e-07  Score=89.68  Aligned_cols=201  Identities=8%  Similarity=-0.070  Sum_probs=138.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHh------------CCCC-----
Q 037695          491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTI-------IDALSKNGRVEEATELMMKMLS------------KGLV-----  546 (701)
Q Consensus       491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~-----  546 (701)
                      ..++...|.+.|.++.... +-....|..+       ..++...++..+++..+..-..            .|+-     
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            4677777888887777632 2234566655       4555555555555555555443            1110     


Q ss_pred             ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 037695          547 ---PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCH  621 (701)
Q Consensus       547 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~  621 (701)
                         --......+...+...|++++|.++|+.+...+|.......++..+.+.+++++|+..|+...... .|.  ...+.
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~  175 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV  175 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence               002234456677888899999999998888777764466667778888899999999998665422 111  23677


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          622 VLVESYLNKGIPLLAYKVACRMFNRNLIPD--LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      .++.++...|++++|+..|++.......|.  .......+.++.+.|+.++|...|+++....|. +.....|..
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            788889999999999999998875333264  256677888889999999999999999998887 666655543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.79  E-value=8.7e-07  Score=86.66  Aligned_cols=161  Identities=12%  Similarity=0.028  Sum_probs=121.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 037695          485 LIRGFCQKGDLEEALSLLDDMYLCKK-DPDT----VTYTTIIDALSKNGRVEEATELMMKMLSKGLV-PT----VVTYRT  554 (701)
Q Consensus       485 ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~  554 (701)
                      .+..+...|++++|..++++..+... .|+.    ..+..+...+...+++++|+..|++....... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            46677888999999999998876321 2221    12334666677778999999999999874222 22    336888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc---C-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCC-HHHHH
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSK---Q-KC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS----KAD-ASTCH  621 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~---~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~  621 (701)
                      +...|...|++++|+.+|+++++.   . ..    ..++..++..|...|++++|+..++++++...    .+. ..++.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999998842   1 12    34788899999999999999999998876532    122 67888


Q ss_pred             HHHHHHHhcCC-hhhHHHHHHHHHh
Q 037695          622 VLVESYLNKGI-PLLAYKVACRMFN  645 (701)
Q Consensus       622 ~l~~~~~~~g~-~~~A~~~~~~~~~  645 (701)
                      .++.+|.+.|+ +++|+..+++++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999995 5999999998876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=6.7e-08  Score=88.68  Aligned_cols=156  Identities=12%  Similarity=-0.048  Sum_probs=82.5

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-hhHHHHHHHHHHhcCCH
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------QKC-RTAYNQVIENLCSFGYL  598 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~-~~~~~~l~~~~~~~g~~  598 (701)
                      ..|++++|.++++.+... ......++..+...+...|++++|...+++++..      .+. ..++..++..+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            345555555533333221 1123445555555566666666666666655542      111 33455566666666666


Q ss_pred             HHHHHHHHHHHHc---CC-C--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHhcCC
Q 037695          599 EEAGKILGKVLRT---AS-K--ADASTCHVLVESYLNKGIPLLAYKVACRMFNRN---LIPD--LKLCKKVSERLILEGK  667 (701)
Q Consensus       599 ~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~  667 (701)
                      ++|...+.++++.   .. .  .....+..++..+...|++++|...+++..+..   ..|.  ..++..++.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            6666666665543   11 1  112345566666666677777766666665411   0111  1344566677777777


Q ss_pred             HHHHHHHHHHHHHcC
Q 037695          668 SEEADTLMLRFVERG  682 (701)
Q Consensus       668 ~~~A~~~~~~~~~~~  682 (701)
                      +++|..+++++.+..
T Consensus       163 ~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          163 LLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777766543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.78  E-value=3.8e-08  Score=95.60  Aligned_cols=195  Identities=10%  Similarity=-0.022  Sum_probs=134.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      +...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|...+++.++.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            45667778888888999999999999888743 3367788888889999999999999999988764 456788888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKCR-TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA  636 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  636 (701)
                      ++...|++++|...|++++...|+. ..+...+....+.   .++... ..........+......+...  ..|++++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence            9999999999999999988876642 1221222222211   111111 122223344555555555443  36889999


Q ss_pred             HHHHHHHHhCCCCCCH-hhHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 037695          637 YKVACRMFNRNLIPDL-KLCKKVSERLILE-GKSEEADTLMLRFVERG  682 (701)
Q Consensus       637 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~  682 (701)
                      ++.++++.+  ..|+. .....+...+.+. +++++|..+|.++.+..
T Consensus       155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            999988887  56664 4444444445554 77889999998887643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.75  E-value=3.4e-07  Score=80.66  Aligned_cols=128  Identities=11%  Similarity=0.025  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS  594 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~  594 (701)
                      .+..+...+...|++++|...|++..... +.+..++..+..++...|++++|...+++++...|. ..++..++.++..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45556666677777777777777776643 445667777777777777777777777777777666 5667777777777


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChhhHHHHHHHHHh
Q 037695          595 FGYLEEAGKILGKVLRTASKADASTCHV--LVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .|++++|...++++++..+. +...+..  ++..+...|++++|+..+.+...
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            77888888777777776533 4444433  33336677777777777765543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.75  E-value=3.8e-06  Score=81.84  Aligned_cols=184  Identities=10%  Similarity=-0.001  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 037695          495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG--RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR-VEDLLKL  571 (701)
Q Consensus       495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~  571 (701)
                      +++++.+++.+.... +.+..+|+.-..++...+  .+++++.+++.+.+.. +-|..+|+.-..++...|. +++++++
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            567777777776643 346667776666666666  3778888888887764 4566777766666777777 5788888


Q ss_pred             HHHHHhcCCC-hhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 037695          572 LEKMLSKQKC-RTAYNQVIENLCSF--------------GYLEEAGKILGKVLRTASKADASTCHVLVESYLNK------  630 (701)
Q Consensus       572 ~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------  630 (701)
                      +++++..+|. ..+|+.....+...              +.+++++..+.+++...+. |...|+.+-..+...      
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence            8888877777 56676666665544              4577888888888877644 777777666665555      


Q ss_pred             -----CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCC
Q 037695          631 -----GIPLLAYKVACRMFNRNLIPDLKLCKKVSERL-----ILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       631 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                           +.++++++.+.++.+  ..|+. .+..+..++     ...|..+++..++.++++..|.
T Consensus       247 ~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             chHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence                 346788888888888  66664 222222222     2467788888888888887763

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.74  E-value=1.9e-07  Score=93.20  Aligned_cols=126  Identities=13%  Similarity=0.015  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----------------TAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      .+..+...|.+.|++++|+..|++++...|..                .++..++.+|.+.|++++|+..++++++..+.
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  228 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN  228 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34444444444455555555555444444432                45555555555566666666666665555422


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037695          615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEA-DTLMLRFV  679 (701)
Q Consensus       615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~  679 (701)
                       +...+..++.+|...|++++|+..|+++++  +.|+ ...+..++.++.+.|++++| ...|++|.
T Consensus       229 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          229 -NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             455555555566666666666666666555  3332 34555555555555655555 33444444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.74  E-value=1.9e-06  Score=84.17  Aligned_cols=165  Identities=11%  Similarity=0.011  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HH
Q 037695          481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-----VTYTTIIDALSKNGRVEEATELMMKMLSKG---LVPT--VV  550 (701)
Q Consensus       481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~  550 (701)
                      .+...+..+...|++++|.+.+.+..+.......     ..+..+...+...|++++|+..+++.....   ..+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4445667778888999998888887764322111     223445566778889999999999887642   1222  45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----C-CH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKML---SKQKC-----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK----A-DA  617 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~  617 (701)
                      +|+.+...|...|++++|..++++++   ...|.     ..++..++..|...|++++|+..++++++....    . -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            78888999999999999999999988   33443     157888999999999999999999998765311    1 16


Q ss_pred             HHHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 037695          618 STCHVLVESYLNKGIPLLA-YKVACRMFN  645 (701)
Q Consensus       618 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  645 (701)
                      .++..++..|...|++++| ...++++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            7788999999999999999 777887765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.73  E-value=5e-08  Score=84.26  Aligned_cols=97  Identities=11%  Similarity=-0.038  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES  626 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  626 (701)
                      +...+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..|+++++..+. ++..+..++.+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~   98 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence            4556666777788888888888888888887776 667778888888888888888888888877643 66777788888


Q ss_pred             HHhcCChhhHHHHHHHHHh
Q 037695          627 YLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       627 ~~~~g~~~~A~~~~~~~~~  645 (701)
                      |...|++++|+..|+++++
T Consensus        99 ~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            8888888888888888877

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.72  E-value=2.7e-07  Score=77.79  Aligned_cols=116  Identities=8%  Similarity=-0.033  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES  626 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  626 (701)
                      +...+..+...+...|++++|...|+++....|. ..++..++.++...|++++|...++++++..+ .+...+..++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence            3555666666666666666666666666666554 55666666666666666666666666666542 255666666666


Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 037695          627 YLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEG  666 (701)
Q Consensus       627 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  666 (701)
                      |...|++++|+..++++.+  ..|+ ...+..++.++...|
T Consensus        94 ~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhc
Confidence            6666777777776666666  3333 244555555555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.72  E-value=2e-07  Score=78.02  Aligned_cols=94  Identities=7%  Similarity=-0.013  Sum_probs=42.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--------HhhHHH
Q 037695          586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD--------LKLCKK  657 (701)
Q Consensus       586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~  657 (701)
                      ..++..+.+.|++++|+..|+++++..+. +...|..++.+|...|++++|+..++++++  +.|+        ..++..
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHH
Confidence            33444444444444444444444444322 344444444444444444444444444444  1111        123444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          658 VSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       658 l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      ++.++...|++++|++.|+++++..
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            5555555555555555555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=6.4e-07  Score=74.29  Aligned_cols=95  Identities=16%  Similarity=0.161  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL  628 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  628 (701)
                      ..+..+...+...|++++|.++++++....|. ..++..++..+...|++++|..+++++++.. +.+...+..++..|.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            34444555555555555555555555554443 4444555555555555555555555555443 224445555555555


Q ss_pred             hcCChhhHHHHHHHHHh
Q 037695          629 NKGIPLLAYKVACRMFN  645 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~  645 (701)
                      ..|++++|...++++.+
T Consensus        89 ~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH
Confidence            55555555555555555

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.69  E-value=1.3e-07  Score=84.72  Aligned_cols=118  Identities=8%  Similarity=0.053  Sum_probs=77.8

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH-HHhcCCH--HHH
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN-LCSFGYL--EEA  601 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~--~~A  601 (701)
                      ..|++++|...+++..... +.+...+..+...|...|++++|...|+++.+..|. ...+..++.+ +...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4566666777776666543 445666777777777777777777777777766665 5566666666 5566776  777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ...++++++..+ .+...+..++..|...|++++|+..++++++
T Consensus       101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            777777776653 2566667777777777777777777777777

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.69  E-value=4.2e-07  Score=76.17  Aligned_cols=117  Identities=7%  Similarity=-0.039  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      ...+..+...+...|++++|...++++....|. ...+..++.++...|++++|...+.++++..+ .+...+..++..|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence            334445555555555555555555555555544 44555555555555666666666655555432 2455555555556


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 037695          628 LNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGK  667 (701)
Q Consensus       628 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  667 (701)
                      ...|++++|+..++++.+.+.. +...+..++.++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            6666666666666655552211 23444455555555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.69  E-value=1.7e-07  Score=78.39  Aligned_cols=108  Identities=17%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK--AD----ASTCH  621 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~  621 (701)
                      ..++..+...+.+.|++++|+..|+++++..|. ..++..++.+|...|++++|+..++++++..+.  ++    ..+|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            456788999999999999999999999999998 788999999999999999999999999886432  12    24678


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 037695          622 VLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV  658 (701)
Q Consensus       622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  658 (701)
                      .++.++...|++++|++.|++.+.  ..|+......+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l  122 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence            889999999999999999999998  56676555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.67  E-value=6.7e-07  Score=74.88  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695          514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL  592 (701)
Q Consensus       514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~  592 (701)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++....|. ...+..++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            3456666667777777777777777776653 445667777777777788888888888877777666 56777777778


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          593 CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      ...|++++|...++++++..+ .+...+..++.++...|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence            888888888888888777653 3566677777777766654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.67  E-value=9.5e-07  Score=73.22  Aligned_cols=113  Identities=18%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC  593 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~  593 (701)
                      ..+..+...+...|++++|..+++++.... +.+..++..+...+...|++++|..+++++....|. ..++..++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            445555556666666666666666665542 334555666666666666666666666666665554 455566666666


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      ..|++++|...++++++..+ .+...+..+...+..
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence            66666666666666665542 244445455444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.66  E-value=5.1e-07  Score=76.02  Aligned_cols=117  Identities=11%  Similarity=0.060  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695          513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN  591 (701)
Q Consensus       513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~  591 (701)
                      +...+..+...+...|++++|...|++..... +.+..++..+...+...|++++|+..++++....|. ...+..++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34556666667777777777777777766643 345666677777777777777777777777776665 5666677777


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                      +...|++++|...++++++..+. +...+..+..++...|
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            77777777777777777665432 3455555555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.65  E-value=3.6e-07  Score=76.36  Aligned_cols=95  Identities=11%  Similarity=-0.015  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL  628 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  628 (701)
                      ..+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..++++++..+. +...+..++.+|.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   83 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            34455555555566666666666665555554 455555555555555566665555555554422 4555555555555


Q ss_pred             hcCChhhHHHHHHHHHh
Q 037695          629 NKGIPLLAYKVACRMFN  645 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~  645 (701)
                      ..|++++|+..++++++
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            55555555555555555

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.65  E-value=5.9e-07  Score=75.01  Aligned_cols=97  Identities=9%  Similarity=-0.056  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER  661 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~  661 (701)
                      ..+..++..+...|++++|+..|+++++..+. ++..|..++.+|...|++++|+..++++++  +.|+ ...+..++.+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence            34555666666677777777777776665432 566666667777777777777777777666  3333 4566666667


Q ss_pred             HHhcCCHHHHHHHHHHHHHcC
Q 037695          662 LILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       662 ~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      +...|++++|+..|+++++..
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhC
Confidence            777777777777777776666

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.64  E-value=1.5e-05  Score=78.00  Aligned_cols=220  Identities=12%  Similarity=0.012  Sum_probs=157.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 037695          422 EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG-KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK-G-DLEEA  498 (701)
Q Consensus       422 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~A  498 (701)
                      .+..++|+.+++.++... +-+..+|+.--..+...| .+++++.++..++... +-+..+|+.-...+.+. + +++++
T Consensus        67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence            344567888888877764 445566666666666677 4888888888887763 44677777766666665 6 78888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------
Q 037695          499 LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVE--------EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR------  564 (701)
Q Consensus       499 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------  564 (701)
                      +.+++.+.+.. +.+...|+.-..++.+.|.++        ++++.++++++.. +-|...|+.....+.+.+.      
T Consensus       145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence            88888887653 446677776666665555555        8899999998875 5578888888877777776      


Q ss_pred             -HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCH
Q 037695          565 -VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL--------------------EEAGKILGKVLRTA-----SKADA  617 (701)
Q Consensus       565 -~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~  617 (701)
                       ++++++++++++...|. ..+|+.+...+.+.|+.                    ........++....     ..+++
T Consensus       223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  302 (349)
T 3q7a_A          223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP  302 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence             78999999999999888 67888877777776653                    23333333333221     13578


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          618 STCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..+.-|+..|...|+.++|.++++.+.+
T Consensus       303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          303 LALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            8888999999999999999999999875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.62  E-value=1.7e-07  Score=80.29  Aligned_cols=118  Identities=14%  Similarity=0.010  Sum_probs=79.1

Q ss_pred             HHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 037695          571 LLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI  649 (701)
Q Consensus       571 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  649 (701)
                      .|++++...|. ...+..++..+...|++++|+..|++++...+ .++..|..++.+|...|++++|+..+++++..++.
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            34444555554 45566677777777777777777777777653 36777777777777777777777777777773322


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695          650 PDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       650 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                       +...+..++.+|...|++++|+..|+++++..|..|....
T Consensus        85 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           85 -EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence             3356667777777777777777777777777765554433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.61  E-value=5.4e-07  Score=82.50  Aligned_cols=154  Identities=14%  Similarity=-0.017  Sum_probs=94.8

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCH
Q 037695          491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK----GLV-PTVVTYRTVIHRYCQVGRV  565 (701)
Q Consensus       491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~g~~  565 (701)
                      ..|++++|.+.++.+.. ........+..+...|...|++++|...+++....    +.. ....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45666666664444332 11123455666666667777777777777666551    111 1244566677777777888


Q ss_pred             HHHHHHHHHHHhc---CC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC
Q 037695          566 EDLLKLLEKMLSK---QK-C----RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KAD----ASTCHVLVESYLNKGI  632 (701)
Q Consensus       566 ~~A~~~~~~~~~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~  632 (701)
                      ++|...+++....   .+ .    ..++..++..+...|++++|...++++++... ..+    ..++..++..+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8887777776665   23 2    23566777777788888888888877764311 112    2335677778888888


Q ss_pred             hhhHHHHHHHHHh
Q 037695          633 PLLAYKVACRMFN  645 (701)
Q Consensus       633 ~~~A~~~~~~~~~  645 (701)
                      +++|...++++.+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877766

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.61  E-value=9.1e-07  Score=88.24  Aligned_cols=96  Identities=14%  Similarity=0.050  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      ..+|..+..+|.+.|++++|+..++++++..|. ..++..++.+|...|++++|+..|+++++..+. +...+..+..++
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~  274 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence            356666777777777777777777777777666 566777777777777777777777777776533 566667777777


Q ss_pred             HhcCChhhH-HHHHHHHHh
Q 037695          628 LNKGIPLLA-YKVACRMFN  645 (701)
Q Consensus       628 ~~~g~~~~A-~~~~~~~~~  645 (701)
                      ...|++++| ...+++|+.
T Consensus       275 ~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            777777766 345555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.58  E-value=8.2e-07  Score=81.07  Aligned_cols=128  Identities=10%  Similarity=0.035  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R----------------TAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      +..+...+...|++++|+..|++++...|. +                .++..++.+|...|++++|+..++++++..+ 
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-  119 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-  119 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-
Confidence            444444455555555555555555544333 1                4556666667777777777777777766542 


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcC
Q 037695          615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEAD-TLMLRFVERG  682 (701)
Q Consensus       615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~  682 (701)
                      .+...+..++.+|...|++++|+..++++++  +.| +..++..+..++...++.+++. ..+.++..++
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3566666777777777777777777777766  333 3456666666666666666665 5555555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.57  E-value=7e-07  Score=72.40  Aligned_cols=102  Identities=16%  Similarity=0.055  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HhhHHHH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD---LKLCKKV  658 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l  658 (701)
                      ...+..++..+...|++++|...++++++..+ .+...+..++..+...|++++|+..++++++  ..|+   ...+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l   82 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK   82 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence            44556667777777777777777777776543 3566677777777777777777777777777  3443   4667777


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHcCCCCC
Q 037695          659 SERLILE-GKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       659 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      +.++... |++++|.++++++.+..+..+
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            7777777 888888888887777776443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.57  E-value=1.3e-06  Score=76.95  Aligned_cols=102  Identities=9%  Similarity=-0.099  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES  626 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  626 (701)
                      +...+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..++++++..+. +...|..++.+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4667888888899999999999999999988886 778888999999999999999999999887644 68888899999


Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          627 YLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       627 ~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      |...|++++|+..++++++  +.|+.
T Consensus        89 ~~~~g~~~~A~~~~~~al~--~~p~~  112 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIE--AEGNG  112 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HHSSS
T ss_pred             HHHccCHHHHHHHHHHHHH--hCCCc
Confidence            9999999999999999988  44443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.56  E-value=1.5e-06  Score=82.12  Aligned_cols=123  Identities=11%  Similarity=0.021  Sum_probs=52.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCC
Q 037695          521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGY  597 (701)
Q Consensus       521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~  597 (701)
                      ...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+......+.   ..++..++.++...|+
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            334444445555555444444322  22223333333444455555555555433322100   1234444444555555


Q ss_pred             HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          598 LEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       598 ~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +++|+..|+++......|.  .......+.++.+.|+.++|...|+++..
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555555443221121  22333444444555555555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.55  E-value=1e-06  Score=74.69  Aligned_cols=98  Identities=10%  Similarity=0.020  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695          547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVE  625 (701)
Q Consensus       547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  625 (701)
                      .+...+..+...+...|++++|...|++++...|. ..++..++.++...|++++|...++++++..+. +...+..++.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   85 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   85 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence            34566666666666777777777777776666665 556666666666777777777777776665533 5666666666


Q ss_pred             HHHhcCChhhHHHHHHHHHh
Q 037695          626 SYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       626 ~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +|...|++++|+..++++++
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            77777777777777766665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.55  E-value=2.9e-06  Score=69.36  Aligned_cols=94  Identities=10%  Similarity=-0.030  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      .+..+...+...|++++|...++++....|. ...+..++.++...|++++|...++++++..+ .+...+..++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence            3444444455555555555555555544443 34444445555555555555555555544432 234444444445555


Q ss_pred             cCChhhHHHHHHHHHh
Q 037695          630 KGIPLLAYKVACRMFN  645 (701)
Q Consensus       630 ~g~~~~A~~~~~~~~~  645 (701)
                      .|++++|...++++.+
T Consensus        85 ~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            5555555555555444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.54  E-value=7.9e-05  Score=72.60  Aligned_cols=197  Identities=7%  Similarity=-0.001  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 037695          460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG--DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGR-VEEATEL  536 (701)
Q Consensus       460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~  536 (701)
                      ++++..++..+.... +-+..+|+.-...+.+.+  .+++++.+++.+.+.. +.|...|+.-..++...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            566777777776652 446677776666666666  4788888888887754 4467777777777777777 5888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc------
Q 037695          537 MMKMLSKGLVPTVVTYRTVIHRYCQV--------------GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF------  595 (701)
Q Consensus       537 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~------  595 (701)
                      ++.+++.. +-|...|+.....+.+.              +.++++++++.+++...|. ..+|+.+-..+.+.      
T Consensus       168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence            88888765 55677777666665554              4578999999999998888 67777776666655      


Q ss_pred             -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 037695          596 -----GYLEEAGKILGKVLRTASKADASTCHVLVES---YLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERL  662 (701)
Q Consensus       596 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~  662 (701)
                           +.++++++.++++++..+. +..++..++..   ....|..+++...+.++.+  +.|-. .-|..+...+
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHHH
Confidence                 4688999999999987654 44444333322   1235677788889999988  55543 4455544443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.54  E-value=6.3e-07  Score=74.15  Aligned_cols=95  Identities=13%  Similarity=0.016  Sum_probs=50.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHh
Q 037695          586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLIL  664 (701)
Q Consensus       586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  664 (701)
                      ..++..+.+.|++++|+..++++++..+. +...|..++.++...|++++|+..++++++  +.| +...+..++.+|..
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence            34445555555555555555555554422 455555555555555566666655555555  333 23455555555666


Q ss_pred             cCCHHHHHHHHHHHHHcCC
Q 037695          665 EGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       665 ~g~~~~A~~~~~~~~~~~~  683 (701)
                      .|++++|+..++++++..|
T Consensus        98 ~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            6666666666666555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.54  E-value=2.1e-07  Score=90.37  Aligned_cols=165  Identities=13%  Similarity=0.012  Sum_probs=119.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695          513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN  591 (701)
Q Consensus       513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~  591 (701)
                      +...+..+...+...|++++|+..|++.+... +.+...|..+..+|.+.|++++|+..++++++..|. ..++..++.+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45677888899999999999999999999864 457888999999999999999999999999999888 7788999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037695          592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEA  671 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  671 (701)
                      |...|++++|...|+++++..+. +...+...++.....+   .+... .........++..+...+...  ..|++++|
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A  154 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRW-NSIEERRIHQESELHSYLTRL--IAAERERE  154 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence            99999999999999999876432 1111112222222211   11111 122222233344555555433  37899999


Q ss_pred             HHHHHHHHHcCCCC
Q 037695          672 DTLMLRFVERGHIQ  685 (701)
Q Consensus       672 ~~~~~~~~~~~~~~  685 (701)
                      ++.++++.+..+..
T Consensus       155 ~~~~~~al~~~p~~  168 (281)
T 2c2l_A          155 LEECQRNHEGHEDD  168 (281)
T ss_dssp             HTTTSGGGTTTSCH
T ss_pred             HHHHHhhhccccch
Confidence            99999888876543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.51  E-value=8.8e-07  Score=73.26  Aligned_cols=93  Identities=12%  Similarity=-0.082  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK  630 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  630 (701)
                      +..+...+.+.|++++|+..|+++++..|. ...+..++.++...|++++|+..++++++..+. +...+..++.+|...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            444556677777777777777777777776 667777777777777777777777777776543 566777777777777


Q ss_pred             CChhhHHHHHHHHHh
Q 037695          631 GIPLLAYKVACRMFN  645 (701)
Q Consensus       631 g~~~~A~~~~~~~~~  645 (701)
                      |++++|+..++++++
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777777777777776

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.51  E-value=1.9e-06  Score=75.77  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695          513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN  591 (701)
Q Consensus       513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~  591 (701)
                      +...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++++...|. ..++..++.+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567777778888888888888888887753 446777888888888888888888888888888777 6777888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC
Q 037695          592 LCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                      |...|++++|+..|+++++..+
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHccCHHHHHHHHHHHHHhCC
Confidence            8888888888888888877654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.50  E-value=1.7e-06  Score=73.27  Aligned_cols=101  Identities=14%  Similarity=-0.008  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSER  661 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  661 (701)
                      ...+..++..+...|++++|+..|.++++..+. +...+..++.+|...|++++|+..++++++.+.. +...+..++.+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence            678889999999999999999999999998644 7889999999999999999999999999994433 46888899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCC
Q 037695          662 LILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       662 ~~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                      |...|++++|+..|+++++..+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChh
Confidence            99999999999999999988765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.50  E-value=4.4e-06  Score=68.28  Aligned_cols=109  Identities=13%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695          514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL  592 (701)
Q Consensus       514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~  592 (701)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++....|. ...+..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3445556666667777777777777766643 345666667777777777777777777777776665 56667777777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          593 CSFGYLEEAGKILGKVLRTASKADASTCHVLV  624 (701)
Q Consensus       593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  624 (701)
                      ...|++++|...++++++..+. +...+..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~  113 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ  113 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence            7777777777777777665432 444444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.49  E-value=1.1e-06  Score=73.58  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK--AD----ASTCHVL  623 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l  623 (701)
                      .+..+...+...|++++|...|+++....|. ...+..++.++...|++++|...++++++..+.  ++    ..++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            4445555555566666666666655555544 445555555555566666666666555544321  11    4455555


Q ss_pred             HHHHHhcCChhhHHHHHHHHHh
Q 037695          624 VESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       624 ~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +.+|...|++++|+..++++.+
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            5566666666666666666655

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.47  E-value=2.8e-06  Score=77.48  Aligned_cols=127  Identities=16%  Similarity=0.045  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPT----------------VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK  580 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  580 (701)
                      +..+...+...|++++|...|.+.+... +.+                ..++..+..+|.+.|++++|+..+++++...|
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            4444445555555555555555555431 111                25677777788888888888888888888777


Q ss_pred             C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH-HHHHHHHh
Q 037695          581 C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY-KVACRMFN  645 (701)
Q Consensus       581 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  645 (701)
                      . ..++..++.+|...|++++|...|+++++..+. +...+..+..++...|+..++. ..+..+..
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6 667778888888888888888888888876533 6677777777777777666665 44555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=5.5e-06  Score=71.08  Aligned_cols=96  Identities=11%  Similarity=-0.009  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLV  624 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  624 (701)
                      ...+..+...+...|++++|...|++++...|.    ...+..++.+|...|++++|+..++++++..+ .+...+..++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHHH
Confidence            444445555555555555555555555555444    23444445555555555555555555544432 1344444455


Q ss_pred             HHHHhcCChhhHHHHHHHHHh
Q 037695          625 ESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+|...|++++|+..++++++
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            555555555555555555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.46  E-value=2e-06  Score=75.08  Aligned_cols=132  Identities=18%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK-AD----AS  618 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~  618 (701)
                      ++..+...+...|++++|+..+++++...+.       ..++..++..+...|++++|...++++++.... .+    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4555556666666666666666666554221       135566677777777777777777766543211 11    34


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          619 TCHVLVESYLNKGIPLLAYKVACRMFNR----NLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      ++..++..+...|++++|+..++++.+.    +..+. ...+..++..+...|++++|..+++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            5666777777888888888877777652    11111 2567778888888999999999998887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.44  E-value=2.7e-06  Score=71.14  Aligned_cols=91  Identities=15%  Similarity=0.051  Sum_probs=47.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYL  628 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~  628 (701)
                      +...+...|++++|...|+++....|..    .++..++.++...|++++|...++++++..+...  +..+..++.+|.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            4445555566666666666555555542    2445555555555555555555555555432211  344445555555


Q ss_pred             hcCChhhHHHHHHHHHh
Q 037695          629 NKGIPLLAYKVACRMFN  645 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~  645 (701)
                      ..|++++|+..++++.+
T Consensus        88 ~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555555

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.43  E-value=2e-06  Score=89.75  Aligned_cols=87  Identities=14%  Similarity=-0.039  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSER  661 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~  661 (701)
                      .+|..++.+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++  +.|+. .++..++.+
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            34445555555555555555555555554422 444555555555555555555555555555  33322 444445555


Q ss_pred             HHhcCCHHHHH
Q 037695          662 LILEGKSEEAD  672 (701)
Q Consensus       662 ~~~~g~~~~A~  672 (701)
                      +.+.|++++|.
T Consensus       395 ~~~~~~~~~a~  405 (457)
T 1kt0_A          395 QKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555554444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.41  E-value=1.8e-06  Score=73.55  Aligned_cols=97  Identities=19%  Similarity=0.011  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-----
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTASKA------D-----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNL-----  648 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----  648 (701)
                      +...+..+.+.|++++|+..|+++++..+..      +     ...|..++.++.+.|++++|+..+.++++  +     
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~   91 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccc
Confidence            3344555555566666666666555544331      2     23777777778888888888888877777  4     


Q ss_pred             --CCCH-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          649 --IPDL-KLC----KKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       649 --~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                        .|+. ..|    ...+.+|...|++++|+..|+++++..|
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence              6664 566    7788888888888888888888877755

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.40  E-value=2.7e-06  Score=68.84  Aligned_cols=97  Identities=13%  Similarity=0.043  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVE  625 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~  625 (701)
                      ...+..+...+...|++++|...++++.+..|. ..++..++.++...|++++|...++++++.. +.  +...+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            445566667777777777777777777777665 5667777777777788888888887777754 23  5667777777


Q ss_pred             HHHhc-CChhhHHHHHHHHHhC
Q 037695          626 SYLNK-GIPLLAYKVACRMFNR  646 (701)
Q Consensus       626 ~~~~~-g~~~~A~~~~~~~~~~  646 (701)
                      .|... |++++|++.++++...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhhc
Confidence            78888 8888888888877773

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.40  E-value=6.3e-07  Score=89.44  Aligned_cols=155  Identities=10%  Similarity=0.008  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037695          514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLC  593 (701)
Q Consensus       514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~  593 (701)
                      ...+..+...+.+.|++++|...|++.+..  .|+...       +...|+.+++...+.        ..++..++.+|.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~--------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK--------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH--------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH--------HHHHHHHHHHHH
Confidence            344566666677777777777777777663  233221       222333333332221        137888999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHH-HHhcCCHHHH
Q 037695          594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSER-LILEGKSEEA  671 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~-~~~~g~~~~A  671 (701)
                      +.|++++|+..++++++..+ .+...|..++.+|...|++++|+..|+++++  +.|+. .++..+..+ ....+..+++
T Consensus       242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764 4788899999999999999999999999988  55554 555555554 3456778889


Q ss_pred             HHHHHHHHHcCCCCCch
Q 037695          672 DTLMLRFVERGHIQPKS  688 (701)
Q Consensus       672 ~~~~~~~~~~~~~~~~~  688 (701)
                      ..+|.++++..+..++.
T Consensus       319 ~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          319 KEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             -----------------
T ss_pred             HHHHHHhhCCCCCCCCC
Confidence            99999999888765543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=1.3e-05  Score=68.72  Aligned_cols=108  Identities=17%  Similarity=0.060  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHH
Q 037695          513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQ  587 (701)
Q Consensus       513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~  587 (701)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+..+|...|++++|+..+++++...|. ...+..
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            3455566666666666666666666666653  344    455666666677777777777777777666665 556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                      ++.+|...|++++|...++++++..+. +...+..+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l  139 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL  139 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence            777777777777777777777665422 44444333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.37  E-value=3.6e-06  Score=70.31  Aligned_cols=110  Identities=12%  Similarity=0.052  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CC----HhhH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI--PD----LKLC  655 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~  655 (701)
                      ...+..++..+...|++++|...++++++.. +.+...+..++..|...|++++|+..++++.+....  ++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3567788999999999999999999999876 447888999999999999999999999999884321  12    6788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHh
Q 037695          656 KKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQ  693 (701)
Q Consensus       656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  693 (701)
                      ..++.++...|++++|...|+++.+..+ .+.....+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~  119 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ  119 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence            8899999999999999999999999876 444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.37  E-value=9.5e-06  Score=67.71  Aligned_cols=104  Identities=17%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhhHHHHH
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADA---STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD--LKLCKKVS  659 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~  659 (701)
                      +..++..+...|++++|...++++++..+. ++   ..+..++.+|...|++++|+..++++++..+...  ...+..++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            344556666777777777777777665432 22   4556666777777777777777777766332211  34566667


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCchH
Q 037695          660 ERLILEGKSEEADTLMLRFVERGHIQPKSE  689 (701)
Q Consensus       660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  689 (701)
                      .++...|++++|+.+|+++++..|..+...
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  113 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAAR  113 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence            777777777777777777777666544433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.36  E-value=2.4e-06  Score=74.95  Aligned_cols=96  Identities=11%  Similarity=0.073  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------------------QKC-RTAYNQVIENLCSFGYLEEAGKILGKVL  609 (701)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  609 (701)
                      ...+......+.+.|++++|+..|.+++..                  .|. ..++..++.+|.+.|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445666667777777777777777777665                  222 3455566666666666666666666666


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          610 RTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       610 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +..+ .++..|..++.+|...|++++|+..++++++
T Consensus        91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            6542 2555666666666666666666666666666

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.36  E-value=5.9e-06  Score=72.40  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSK--------G---------LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  577 (701)
                      ..+......+.+.|++++|+..|.+.+..        .         -+.+...|..+..+|.+.|++++|+..+++++.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            45566666777777777777777776653        0         011234566666777777777777777777777


Q ss_pred             cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          578 KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       578 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      ..|. ..++..++.+|...|++++|...|+++++..
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            7666 5667777777777777777777777777664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.36  E-value=4.6e-07  Score=74.55  Aligned_cols=83  Identities=12%  Similarity=0.128  Sum_probs=55.7

Q ss_pred             cCCHHHHHHHHHHHHhcC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695          562 VGRVEDLLKLLEKMLSKQ---KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY  637 (701)
Q Consensus       562 ~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  637 (701)
                      .|++++|+..|+++++.+   |. ..++..++.+|...|++++|+..++++++..+. ++..+..++.+|...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            467777777777777763   44 456667777777777777777777777776533 5666677777777777777777


Q ss_pred             HHHHHHHh
Q 037695          638 KVACRMFN  645 (701)
Q Consensus       638 ~~~~~~~~  645 (701)
                      ..+++++.
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777766

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.34  E-value=2.7e-06  Score=89.21  Aligned_cols=116  Identities=12%  Similarity=0.042  Sum_probs=57.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695          524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG  602 (701)
Q Consensus       524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  602 (701)
                      +.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|++.++++++..|. ..++..++.+|...|++++|+
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344555555555555555432 233555555555555555555555555555555554 445555555555555555555


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhhHHHHHH
Q 037695          603 KILGKVLRTASKADASTCHVLVES--YLNKGIPLLAYKVAC  641 (701)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  641 (701)
                      ..++++++..+. +...+..+..+  +.+.|++++|++.++
T Consensus        95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            555555554322 22233333333  555555555555555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.33  E-value=2.5e-05  Score=81.05  Aligned_cols=195  Identities=12%  Similarity=-0.001  Sum_probs=102.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 037695          451 IQSLCREGKMDGAKKFMQECLNKGCAVNV----------------VNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPD  513 (701)
Q Consensus       451 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~  513 (701)
                      ...+.+.|++++|...|..+.+.......                ..+..+...|...|++++|.+.+..+...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            34556677777777777777665322110                124556666667777777776666654311 0111


Q ss_pred             H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 037695          514 T----VTYTTIIDALSKNGRVEEATELMMKMLSK----GLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-----  579 (701)
Q Consensus       514 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----  579 (701)
                      .    .+.+.+...+...|+++.|..++......    +..+. ..++..++..|...|++++|..+++++....     
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            1    11222233333456666666666655431    21222 3455556666666666666666666554431     


Q ss_pred             -CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          580 -KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS---KAD---ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       580 -p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                       +. ..++..++..|...|++++|..++++++....   .|.   ...+..++..+...|++++|...+.++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             11 33555566666666666666666666543311   111   12344445555556666666666655555

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.31  E-value=1.1e-06  Score=92.15  Aligned_cols=120  Identities=12%  Similarity=-0.020  Sum_probs=100.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI  632 (701)
Q Consensus       554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  632 (701)
                      .+...+.+.|++++|++.|+++++..|. ..++..++.+|.+.|++++|+..++++++..+ .+...+..++.+|...|+
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence            3445567889999999999999999988 78999999999999999999999999999864 478899999999999999


Q ss_pred             hhhHHHHHHHHHhCCCCCC-HhhHHHHHHH--HHhcCCHHHHHHHHH
Q 037695          633 PLLAYKVACRMFNRNLIPD-LKLCKKVSER--LILEGKSEEADTLML  676 (701)
Q Consensus       633 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~  676 (701)
                      +++|++.++++++  +.|+ ...+..++.+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999  4443 3556666666  888999999999998

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.29  E-value=7.6e-06  Score=82.51  Aligned_cols=89  Identities=6%  Similarity=-0.084  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSE  660 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  660 (701)
                      ..++..++.+|.+.|++++|+..++++++..+ .+...+..++.+|...|++++|+..++++++  +.| +..++..+..
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            45677788888888888888888888887653 3677778888888888888888888888887  444 3466666777


Q ss_pred             HHHhcCCHHHHHH
Q 037695          661 RLILEGKSEEADT  673 (701)
Q Consensus       661 ~~~~~g~~~~A~~  673 (701)
                      ++...++.+++..
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.28  E-value=4.5e-06  Score=71.03  Aligned_cols=93  Identities=11%  Similarity=0.010  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------------RTAYNQVIENLCSFGYLEEAGKILGKVLRT-------  611 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------  611 (701)
                      +......+.+.|++++|+..|+++++..|+             ...|..++.++.+.|++++|+..++++++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            444555666677777777777777766665             126777888888888888888888888876       


Q ss_pred             CCCCCHHHH----HHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          612 ASKADASTC----HVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       612 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .+. +...|    ...+.++...|++++|+..|+++++
T Consensus        94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            532 56677    8888888888888888888888877

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.27  E-value=4.6e-05  Score=81.31  Aligned_cols=160  Identities=11%  Similarity=-0.027  Sum_probs=126.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC-
Q 037695          529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR----------VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG-  596 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-  596 (701)
                      ..++|++.+++++... +-+..+|+.-..++...|+          ++++++++++++..+|. ..+|..-..++.+.| 
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            3567788888888754 3445666666666666666          88999999999998888 778888888888888 


Q ss_pred             -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---------
Q 037695          597 -YLEEAGKILGKVLRTASKADASTCHVLVESYLNKG-IPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE---------  665 (701)
Q Consensus       597 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------  665 (701)
                       ++++++..++++++..++ +..+|+.-.+.+...| .++++++.+.++.+.++. +...|...+..+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence             779999999999998755 8888988888888888 888999999999885554 567888877777663         


Q ss_pred             -----CCHHHHHHHHHHHHHcCCCCCchHHH
Q 037695          666 -----GKSEEADTLMLRFVERGHIQPKSEEH  691 (701)
Q Consensus       666 -----g~~~~A~~~~~~~~~~~~~~~~~~~~  691 (701)
                           +.+++|++++.++++..|..++.=..
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y  231 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFY  231 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence                 56899999999999998866554433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.25  E-value=6.1e-05  Score=78.10  Aligned_cols=197  Identities=9%  Similarity=-0.021  Sum_probs=111.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 037695          381 LNGLCHNGKSLEAREMINTSEEEWWTPNA----------------ITYSVVMHGLRREGKLSEACDVVREMVKKG-FFPT  443 (701)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~  443 (701)
                      ...+.+.|++++|.+.|..+.+.......                ..+..+...|...|++++|.+.+..+...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            44567778888888888888775422111                125567777777777777777777665431 1112


Q ss_pred             HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 037695          444 PV----EINLLIQSLCREGKMDGAKKFMQECLNK----GCAV-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLC--KK--  510 (701)
Q Consensus       444 ~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~--  510 (701)
                      ..    +.+.+-..+...|+++.+..++......    +..+ -..++..+...|...|++++|..+++++...  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            11    1222222333456777777777665432    1111 2345566667777777777777777765531  11  


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695          511 DP-DTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       511 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  577 (701)
                      .+ ...++..++..|...|++++|..++++....  .+..+    ...+..+...+...|++++|...|.++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            11 1335666667777777777777777665542  11111    23344555556666777777766666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.24  E-value=5.7e-06  Score=72.10  Aligned_cols=129  Identities=16%  Similarity=0.110  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----hhH
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSKGL-VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---C----RTA  584 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~  584 (701)
                      +..+...|...|++++|...+++...... .++    ..++..+...+...|++++|...++++....+   +    ..+
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            44444455555555555555554443200 011    13455566666666777777666666554321   1    234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTAS-K----ADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +..++..+...|++++|...++++++... .    ....++..++..|...|++++|+..++++.+
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            55666777777777777777777654311 0    1134566677778888888888888877765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.21  E-value=1.1e-05  Score=84.17  Aligned_cols=138  Identities=9%  Similarity=-0.009  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      ....|..+...|.+.|++++|+..|++..+..  |+...+           ..+...+ ...       ....+|..+..
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~-------~~~~~~~nla~  325 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SES-------FLLAAFLNLAM  325 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHH-------HHHHHHHHHHH
Confidence            34556666677777777777777777766522  221000           0000000 000       01344555556


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA  636 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  636 (701)
                      +|.+.|++++|+..+++++...|. ..++..++.+|...|++++|+..|+++++..+. +...+..+..++...|++++|
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666555 455666666666666666666666666654422 444555556666666655544


Q ss_pred             H
Q 037695          637 Y  637 (701)
Q Consensus       637 ~  637 (701)
                      .
T Consensus       405 ~  405 (457)
T 1kt0_A          405 D  405 (457)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.20  E-value=2.9e-06  Score=69.62  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=45.3

Q ss_pred             cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 037695          527 NGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGK  603 (701)
Q Consensus       527 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~  603 (701)
                      .|++++|+..|++.++.+  -+.+...+..+..+|...|++++|+..|+++++..|+ ..++..++.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            355555666666655532  1222344555555556666666666666666655555 4555555666666666666666


Q ss_pred             HHHHHHHc
Q 037695          604 ILGKVLRT  611 (701)
Q Consensus       604 ~~~~~~~~  611 (701)
                      .++++++.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66655554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.16  E-value=4.2e-06  Score=71.06  Aligned_cols=96  Identities=14%  Similarity=0.030  Sum_probs=67.5

Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY----------LEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      +.+.+++|++.+++.++.+|. ...|..++.++...++          +++|+..|+++++..+. +..+|..++.+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence            445667777777777777776 6667767777766655          35777777777777644 66777777777776


Q ss_pred             cC-----------ChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 037695          630 KG-----------IPLLAYKVACRMFNRNLIPDLKLCKKVS  659 (701)
Q Consensus       630 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~  659 (701)
                      .|           ++++|++.|+++++  +.|+...|...+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al  131 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            64           78888888888888  777766555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.14  E-value=2e-05  Score=79.40  Aligned_cols=89  Identities=9%  Similarity=-0.059  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES  626 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  626 (701)
                      +..+|..+..+|.+.|++++|+..++++++..|. ..++..++.+|...|++++|+..|+++++..+. +...+..+...
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~  350 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV  350 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3566777888888888888888888888888776 677888888888888888888888888887543 66777777777


Q ss_pred             HHhcCChhhHH
Q 037695          627 YLNKGIPLLAY  637 (701)
Q Consensus       627 ~~~~g~~~~A~  637 (701)
                      +...++.+++.
T Consensus       351 ~~~~~~~~~a~  361 (370)
T 1ihg_A          351 KQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.14  E-value=6.3e-05  Score=80.21  Aligned_cols=173  Identities=10%  Similarity=-0.028  Sum_probs=133.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695          493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGR----------VEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV  562 (701)
Q Consensus       493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  562 (701)
                      ...++|++.++++.... +-+...|+.-..++...|+          +++++..++.+.+.. +-+..+|..-..++.+.
T Consensus        43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            34467788888887743 2345566666666666666          889999999998864 55778888888888888


Q ss_pred             C--CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 037695          563 G--RVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG-YLEEAGKILGKVLRTASKADASTCHVLVESYLNK--------  630 (701)
Q Consensus       563 g--~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  630 (701)
                      |  ++++++++++++++.+|. ..+|+.-...+...| .++++++.++++++..+. |...|+.....+.+.        
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence            8  679999999999998887 678888888888888 889999999999887644 888888888777663        


Q ss_pred             ------CChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHH
Q 037695          631 ------GIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEE  670 (701)
Q Consensus       631 ------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~  670 (701)
                            +.+++|++.+.+++.  +.|+ ...|..+...+.+.+++++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence                  457889999999998  4454 5788878877777777554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.11  E-value=6.4e-06  Score=82.11  Aligned_cols=148  Identities=11%  Similarity=0.059  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      ....+..+...+.+.|++++|+..|++....  .|+...       +...++.+++...+.          ...|..+..
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~  238 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence            3566778888899999999999999998763  455432       223344444433221          136778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhh
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGIPLL  635 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~  635 (701)
                      +|.+.|++++|+..+++++...|. ..++..++.+|...|++++|...|+++++..+. +...+..+... ....+..+.
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999988887 778889999999999999999999998876533 55566666655 344567778


Q ss_pred             HHHHHHHHHh
Q 037695          636 AYKVACRMFN  645 (701)
Q Consensus       636 A~~~~~~~~~  645 (701)
                      +...|.+|+.
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            8888888887

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.03  E-value=2.2e-05  Score=81.67  Aligned_cols=124  Identities=13%  Similarity=0.084  Sum_probs=71.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhc-----CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHH
Q 037695          559 YCQVGRVEDLLKLLEKMLSK-----QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRT-----AS-KAD-ASTCHV  622 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~  622 (701)
                      +..+|++++|+.+++++++.     +|+    ..+++.|+..|...|++++|..+++++++.     |. .|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34456666666666555443     222    235556666666666666666666655432     11 111 244566


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHh-----CCCC-CCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          623 LVESYLNKGIPLLAYKVACRMFN-----RNLI-PDL-KLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       623 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                      |+..|..+|++++|..+++++++     .|.. |+. .+...+..++...+++++|...|.++.+..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777777776666654     1221 222 455566677777788888888888776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.00  E-value=0.00017  Score=60.84  Aligned_cols=110  Identities=14%  Similarity=0.037  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHH
Q 037695          564 RVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKV  639 (701)
Q Consensus       564 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~  639 (701)
                      ++++|+++|++..+.+.. ...  ++..|...+.+++|...|+++.+.+   ++..+..|+..|..    .+++++|+..
T Consensus        10 d~~~A~~~~~~aa~~g~~-~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEM-FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCT-THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCH-hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            455666666666554422 222  5555555556666666666666643   55666666666666    5667777777


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 037695          640 ACRMFNRNLIPDLKLCKKVSERLIL----EGKSEEADTLMLRFVERG  682 (701)
Q Consensus       640 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  682 (701)
                      ++++.+.|   +...+..++..|..    .+++++|..+|+++.+.|
T Consensus        84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77766642   45566666666766    677777777777777765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.94  E-value=6.6e-06  Score=66.53  Aligned_cols=62  Identities=13%  Similarity=0.158  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      ..+..+...+...|++++|+..|++++...|. ..++..++.++...|++++|+..++++++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34444444444455555555555544444443 344444444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.93  E-value=1.9e-05  Score=67.08  Aligned_cols=97  Identities=9%  Similarity=-0.063  Sum_probs=81.8

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------hhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695          593 CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP----------LLAYKVACRMFNRNLIPD-LKLCKKVSER  661 (701)
Q Consensus       593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~-~~~~~~l~~~  661 (701)
                      .+.+.+++|...++++++..+. +...|..++.++...|++          ++|+..|+++++  +.|+ ...|..++.+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence            4566789999999999998755 899999999999998875          499999999999  6665 4889999999


Q ss_pred             HHhcC-----------CHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695          662 LILEG-----------KSEEADTLMLRFVERGHIQPKSEEHL  692 (701)
Q Consensus       662 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l  692 (701)
                      |...|           ++++|+.+|+++++.+|..+.-...+
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99875           89999999999999998765544433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.90  E-value=5.9e-05  Score=61.38  Aligned_cols=78  Identities=13%  Similarity=-0.017  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .|+..|+++++..|. ...+..++..|...|++++|+..++++++..+ .+...|..++.+|...|++++|+..++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555555555554 45555666666666666666666666665542 2455555666666666666666666666555

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.87  E-value=5.6e-05  Score=60.86  Aligned_cols=93  Identities=10%  Similarity=-0.010  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-------Hhh
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-------LKL  654 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~  654 (701)
                      ...+..++..+...|++++|+..++++++..+ .++..+..++.+|...|++++|+..++++++  +.|+       ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence            34566777788888888888888888887653 3677777888888888888888888888887  4443       456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 037695          655 CKKVSERLILEGKSEEADTLMLR  677 (701)
Q Consensus       655 ~~~l~~~~~~~g~~~~A~~~~~~  677 (701)
                      +..++.++...|++++|+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHH
Confidence            66777777777777777766643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.85  E-value=0.00037  Score=58.76  Aligned_cols=110  Identities=12%  Similarity=-0.018  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKI  604 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~  604 (701)
                      ++++|...|++..+.| .|...    |...|...+.+++|+++|++..+. .++.++..|+.+|..    .+++++|..+
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            4556666666666655 33332    455555555666666666666654 345566666666665    5667777777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCC
Q 037695          605 LGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  647 (701)
                      |+++.+.+   ++..+..|...|..    .+++++|+..++++.+.|
T Consensus        84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77666643   55666666666666    666777777777666643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.82  E-value=0.0002  Score=54.99  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      .+..+...+...|++++|+..+++++...|. ..++..++.++...|++++|...++++++..+ .+...+..++.++
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~   87 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            3444444455555555555555555544443 34444445555555555555555555444432 1334444444333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.80  E-value=6.5e-05  Score=78.05  Aligned_cols=89  Identities=13%  Similarity=0.001  Sum_probs=38.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHH
Q 037695          488 GFCQKGDLEEALSLLDDMYLC---KKDPD----TVTYTTIIDALSKNGRVEEATELMMKMLSK-----GL-VP-TVVTYR  553 (701)
Q Consensus       488 ~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~~~  553 (701)
                      .+...|++++|+.++++.++.   -+.|+    ..+++.|..+|...|++++|..++++.+..     |- .| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            344555666665555554421   01111    223444555555555555555555444321     10 01 122344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 037695          554 TVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       554 ~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      .|...|...|++++|+.++++++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            44444444444444444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.77  E-value=0.00018  Score=58.36  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      .|+..|++..+.. +.+...+..+...|...|++++|+..|++++...|. ...+..++.+|...|++++|...|+++++
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3566677766653 446777777777788888888888888888777776 66777778888888888888888887766


Q ss_pred             c
Q 037695          611 T  611 (701)
Q Consensus       611 ~  611 (701)
                      .
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.71  E-value=0.00018  Score=56.73  Aligned_cols=64  Identities=9%  Similarity=0.072  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      +...+..+..+|...|++++|+..|+++++..|. ..++..++.+|...|++++|+..++++++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4556666666666777777777777777666665 556666666676777777777766666543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.64  E-value=0.00032  Score=68.49  Aligned_cols=70  Identities=13%  Similarity=-0.019  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          614 KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQ  685 (701)
Q Consensus       614 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  685 (701)
                      +.++.++..+...+...|++++|+..+++++..  .|+...|..++..+.-.|++++|.+.|++++..+|..
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            445666666666666667777777777777773  3566566666666777777777777777777766533

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.62  E-value=0.00052  Score=52.55  Aligned_cols=81  Identities=16%  Similarity=0.175  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695          514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL  592 (701)
Q Consensus       514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~  592 (701)
                      ...+..+...+...|++++|...|++..... +.+..++..+..++.+.|++++|...++++....|. ..++..++.++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3456666677777777777777777777653 445667777777788888888888888887777776 55666666665


Q ss_pred             Hhc
Q 037695          593 CSF  595 (701)
Q Consensus       593 ~~~  595 (701)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.55  E-value=0.00025  Score=55.90  Aligned_cols=63  Identities=10%  Similarity=-0.045  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..++..++.+|...|++++|+..|+++++..+. +...|..++.+|...|++++|+..++++++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566777777777777777777777777776543 556677777777777777777777777766

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.31  E-value=0.00032  Score=55.01  Aligned_cols=56  Identities=20%  Similarity=0.154  Sum_probs=28.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          589 IENLCSFGYLEEAGKILGKVLRTASKADAS-TCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       589 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +..+...|++++|+..++++++..+. +.. .+..++.+|...|++++|+..++++++
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33444555555555555555544322 344 555555555555555555555555555

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.25  E-value=0.0034  Score=61.31  Aligned_cols=71  Identities=17%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHH
Q 037695          582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCK  656 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  656 (701)
                      +.++..++..+...|++++|...+++++..+  |+...|..++..+...|++++|.+.|++++.  +.|...+|.
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~  347 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY  347 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence            4555555555555566666666666666654  4555555666666666666666666666666  455554443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.14  E-value=0.00072  Score=52.87  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=39.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RT-AYNQVIENLCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                      ....+.+.|++++|+..++++++..|. .. .+..++.+|...|++++|+..|+++++..+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            344556667777777777777766665 45 666667777777777777777777766553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.05  E-value=0.0034  Score=52.57  Aligned_cols=64  Identities=9%  Similarity=-0.020  Sum_probs=28.7

Q ss_pred             hhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          582 RTAYNQVIENLCSFG---YLEEAGKILGKVLRTA-SKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..+...+++++++.+   +.++++.+++++++.. +..+...+..|+-+|.+.|++++|+++++.+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            444444555555444   3334555555544433 101233334444444555555555555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.02  E-value=0.0014  Score=66.87  Aligned_cols=25  Identities=20%  Similarity=-0.045  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      +++.++..|...|++++|+.+++++
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            3444444444444444444444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.99  E-value=0.0081  Score=46.06  Aligned_cols=63  Identities=10%  Similarity=0.033  Sum_probs=28.3

Q ss_pred             hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          582 RTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +..+..++.++...++   .++|..+++++++..+. ++.....++..+...|++++|+..|+++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444444444433222   34445555554444322 444444444444444444444444444444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.92  E-value=0.0052  Score=47.20  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          546 VPTVVTYRTVIHRYCQVGR---VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK  614 (701)
Q Consensus       546 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  614 (701)
                      +.++..+..+..++...++   .++|..+++++++.+|+ +.+...++..+...|++++|+..|+++++..+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5677778888877765554   68889999999888888 678888888888899999999999998876543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.91  E-value=0.0062  Score=48.03  Aligned_cols=68  Identities=12%  Similarity=0.031  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTA------SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      .-+..++..+...|++..|...++.+++..      ..+...++..|+.+|.+.|+++.|+..++++.+  +.|+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~   79 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence            344556666677777777777777666542      122345566666666666666666666666666  44443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.89  E-value=0.0041  Score=63.50  Aligned_cols=87  Identities=15%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhc-----CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHH
Q 037695          559 YCQVGRVEDLLKLLEKMLSK-----QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRT-----AS-KAD-ASTCHV  622 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~  622 (701)
                      +.+.|++++|+.++++++..     +|+    ..+++.++..|...|++++|+.++++++..     |. .|+ ..+++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44555666666666666543     122    234555666666666666666666655432     11 111 234556


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHh
Q 037695          623 LVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       623 l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      |+..|..+|++++|+.+++++++
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Confidence            66666666666666666666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.88  E-value=0.022  Score=53.27  Aligned_cols=85  Identities=13%  Similarity=0.060  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChhh
Q 037695          565 VEDLLKLLEKMLSKQKC---RTAYNQVIENLCSF-----GYLEEAGKILGKVLRTASKADASTCHVLVESYLNK-GIPLL  635 (701)
Q Consensus       565 ~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~  635 (701)
                      ...|...++++++.+|+   ..+|..++..|...     |+.++|.+.|+++++.++.-+..++..++..++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            34555666666666665   23556666666653     66666666666666655433355555556655553 66666


Q ss_pred             HHHHHHHHHhCCCC
Q 037695          636 AYKVACRMFNRNLI  649 (701)
Q Consensus       636 A~~~~~~~~~~~~~  649 (701)
                      |...+++++...+.
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            66666666664443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.86  E-value=0.0049  Score=62.85  Aligned_cols=83  Identities=12%  Similarity=0.026  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC----hhHHHHHHHH
Q 037695          528 GRVEEATELMMKMLSK---GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK-----QKC----RTAYNQVIEN  591 (701)
Q Consensus       528 g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~  591 (701)
                      |++++|..++++.++.   -+.|+    ..+++.|+.+|...|++++|+.++++++..     +|+    ..+++.|+..
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4555555555554431   11121    345666667777777777777777666543     222    3456666666


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 037695          592 LCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       592 ~~~~g~~~~A~~~~~~~~~  610 (701)
                      |...|++++|+.+++++++
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            7777777777766666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.81  E-value=0.082  Score=59.43  Aligned_cols=166  Identities=16%  Similarity=0.103  Sum_probs=87.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695          448 NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN  527 (701)
Q Consensus       448 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~  527 (701)
                      ..++..+.+.|.++.|.++.+.         ..   .-.......|+++.|+++.+.+      .+...|..+...+.+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence            5555666666666666655421         11   1123345567777777765432      3566777777777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          528 GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGK  607 (701)
Q Consensus       528 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  607 (701)
                      ++++.|.+.|.++..         |..+...+...|+.+...++.+.+...+.    ++.-..+|.+.|++++|++    
T Consensus       695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----~~~A~~~~~~~g~~~~a~~----  757 (814)
T 3mkq_A          695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK----FNLAFNAYWIAGDIQGAKD----  757 (814)
T ss_dssp             TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHH----
T ss_pred             CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----hHHHHHHHHHcCCHHHHHH----
Confidence            777777777776643         33444445555655554444333332211    1111222333444444443    


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHH
Q 037695          608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL----KLCKKVSERLILEGKSEEA  671 (701)
Q Consensus       608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A  671 (701)
                                        .|.+.+++++|+.++++     ..|..    .+...+...+...|+.+.|
T Consensus       758 ------------------~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          758 ------------------LLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             ------------------HHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             ------------------HHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence                              44455666777766543     22223    4555555566666665433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.78  E-value=0.0081  Score=50.26  Aligned_cols=81  Identities=17%  Similarity=0.065  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-CC--hhHHHHHHHHHHhcCCHHHHHHH
Q 037695          531 EEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG---RVEDLLKLLEKMLSKQ-KC--RTAYNQVIENLCSFGYLEEAGKI  604 (701)
Q Consensus       531 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~  604 (701)
                      ..+.+.|.+....+ +++..+...+..++++++   ++++++.+++...+.. |.  ...+..++-++.+.|++++|.+.
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            33444444444443 345555555555555555   3445555555555554 41  34444555555555555555555


Q ss_pred             HHHHHHcC
Q 037695          605 LGKVLRTA  612 (701)
Q Consensus       605 ~~~~~~~~  612 (701)
                      ++.+++..
T Consensus        94 ~~~lL~ie  101 (152)
T 1pc2_A           94 VRGLLQTE  101 (152)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            55555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.74  E-value=0.013  Score=59.78  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=63.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC----hhHHH
Q 037695          523 ALSKNGRVEEATELMMKMLSK---GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK-----QKC----RTAYN  586 (701)
Q Consensus       523 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~  586 (701)
                      .+...|++++|..++++.++.   -+.|+    ..+++.++.+|...|++++|+.++++++..     +|.    ..+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            345667778888888777653   12222    446777788888888888888888877654     333    35678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          587 QVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       587 ~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      .|+..|...|++++|+.+++++++
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Confidence            888888888988888888887754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.59  E-value=0.016  Score=54.22  Aligned_cols=92  Identities=13%  Similarity=0.148  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhc-CCH
Q 037695          530 VEEATELMMKMLSKGLVPT---VVTYRTVIHRYCQ-----VGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSF-GYL  598 (701)
Q Consensus       530 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g~~  598 (701)
                      ...|...+++.++.  .|+   ...|..+...|.+     -|+.++|.+.|+++++.+|+  ..++..++..++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            56788888888874  566   5678889989988     49999999999999999995  67888899999985 999


Q ss_pred             HHHHHHHHHHHHcCCC--CCHHHHHHH
Q 037695          599 EEAGKILGKVLRTASK--ADASTCHVL  623 (701)
Q Consensus       599 ~~A~~~~~~~~~~~~~--~~~~~~~~l  623 (701)
                      ++|.+.++++++.++.  |+....+.+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            9999999999998877  665554444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.22  E-value=0.18  Score=56.64  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=28.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          349 FCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSE  401 (701)
Q Consensus       349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  401 (701)
                      ....|+++.|.++.+.+      .+...|..+...+.+.++++.|.+.|..+.
T Consensus       662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34566666666654332      245666666666666677666666666553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.14  E-value=0.027  Score=45.24  Aligned_cols=87  Identities=8%  Similarity=-0.092  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHH
Q 037695          598 LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL---AYKVACRMFNRNLIP--DLKLCKKVSERLILEGKSEEAD  672 (701)
Q Consensus       598 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~  672 (701)
                      +..+.+.|.+....+. ++..+-..+++++.+..+...   ++.+++.+.+.+ .|  .......++-++.+.|++++|.
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            3344444444444332 455555566666666655444   555666555532 12  2244445566666666666666


Q ss_pred             HHHHHHHHcCCCCC
Q 037695          673 TLMLRFVERGHIQP  686 (701)
Q Consensus       673 ~~~~~~~~~~~~~~  686 (701)
                      .+++.+++..|..+
T Consensus        95 ~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           95 KYVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhCCCCH
Confidence            66666666665433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.08  E-value=0.095  Score=41.02  Aligned_cols=66  Identities=12%  Similarity=-0.018  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-------KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                      +...+..|...+.+.|++..|...|+.+++..       +. ..++..++.+|.+.|+++.|...++++++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            44555566667777777777777777666541       11 45666777777777777777777777776543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.94  E-value=2.7e-06  Score=83.99  Aligned_cols=232  Identities=14%  Similarity=0.087  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037695          142 IVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVL  221 (701)
Q Consensus       142 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  221 (701)
                      .+|+.+..+..+.+...+|.+.|  + +.   -|+..|..++.+..+.|.+++-+..+....+.  ..++..=+.|+-+|
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsy--I-kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay  126 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSY--I-KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL  126 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSS--C-CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred             cHHHHHHHHHHccCchHHHHHHH--H-hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence            36777777777777666665544  1 11   35556667777777777777766666665544  23344455666666


Q ss_pred             HccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 037695          222 VVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVR  301 (701)
Q Consensus       222 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~  301 (701)
                      ++.++..+-.+++.       .||..-...+.+-|...|.++.|.-+|..+...         ..|...+.+.|++..|.
T Consensus       127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~AV  190 (624)
T 3lvg_A          127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQAAV  190 (624)
T ss_dssp             HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGSST
T ss_pred             HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHHHH
Confidence            66666544332221       355555556666666666666666655544322         22233333444443333


Q ss_pred             HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          302 DLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFL  381 (701)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  381 (701)
                      +.-                          ++   .-++.||..+-.+|...+++..|.-.--.++-+   |  .-...++
T Consensus       191 daA--------------------------rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv  236 (624)
T 3lvg_A          191 DGA--------------------------RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELI  236 (624)
T ss_dssp             TTT--------------------------TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGG
T ss_pred             HHH--------------------------Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHH
Confidence            211                          11   236779999999999999998887665555432   1  1223466


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037695          382 NGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVR  433 (701)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  433 (701)
                      ..|-..|.+++-+.+++.-... -....-.|+.|.-.|++- ++++..+.++
T Consensus       237 ~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlk  286 (624)
T 3lvg_A          237 NYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLE  286 (624)
T ss_dssp             SSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred             HHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            7788999999999999887742 245677788888888775 3455444443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.66  E-value=0.66  Score=37.29  Aligned_cols=136  Identities=13%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHH
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGK  603 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~  603 (701)
                      -.|.+++..++..+..+.   .+..-|+.++--....-+=+-..++++.+-+....  -.....++.+|.+.|.      
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~------   89 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT------   89 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC------
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc------
Confidence            456666666666666553   24444555554444444445555555554433210  0112233333333332      


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                                  +.......+..+..+|..+.-.+++..++. +..|++...-.++.+|.+.|+..+|.+++.++-++|.
T Consensus        90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence                        333344455566677777766666666543 3566777777788888888888888888888888774

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.56  E-value=0.088  Score=43.33  Aligned_cols=54  Identities=13%  Similarity=0.085  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695          596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP  650 (701)
Q Consensus       596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  650 (701)
                      ++.++|.++|+.++.....- ..+|...+..-.++|+...|.+++.+++..+.+|
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            55566666666665542222 5555555555566666666666666666655443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.32  E-value=0.00065  Score=67.49  Aligned_cols=231  Identities=10%  Similarity=0.084  Sum_probs=154.5

Q ss_pred             CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695          139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI  218 (701)
Q Consensus       139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll  218 (701)
                      -|+..|..++.+..+.|.+++-...+.-.++..  .++..=+.|+-+|++.++..+-.+.    .   ..||..-...+.
T Consensus        81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEef----l---~~~N~A~iq~VG  151 (624)
T 3lvg_A           81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----I---NGPNNAHIQQVG  151 (624)
T ss_dssp             SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTST----T---SCCSSSCTHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHH----H---cCCCcccHHHHH
Confidence            345579999999999999999999987665543  3555567899999999987653332    2   257777788888


Q ss_pred             HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChh
Q 037695          219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIK  298 (701)
Q Consensus       219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~  298 (701)
                      .-|...|.++.|.-+|..+..         |.-|...+.+.|++..|.+.-++.      -++.||-.+-.+|...+.+.
T Consensus       152 Drcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~Efr  216 (624)
T 3lvg_A          152 DRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR  216 (624)
T ss_dssp             HHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTT
T ss_pred             HHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHH
Confidence            999999999999888776542         445556677778877776543222      36677888888888888777


Q ss_pred             HHHHHHHHHHhc-------CCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 037695          299 EVRDLMEKMVND-------SNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH-GC  370 (701)
Q Consensus       299 ~a~~~~~~~~~~-------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~  370 (701)
                      -|.-+--.++-.       ...+-+.|.+++-+.+++.-... -......|+-|.-.|++- ++++..+-++....+ ++
T Consensus       217 LAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi  294 (624)
T 3lvg_A          217 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI  294 (624)
T ss_dssp             TTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC
T ss_pred             HHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH
Confidence            665443333221       12344558888888888776632 235677888888878775 344444443332221 11


Q ss_pred             CC------CHHHHHHHHHHHHhcCCHHHHHH
Q 037695          371 KP------NTVSYTAFLNGLCHNGKSLEARE  395 (701)
Q Consensus       371 ~~------~~~~~~~li~~~~~~g~~~~A~~  395 (701)
                      +.      ....|.-++..|.+-.+++.|..
T Consensus       295 pKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            11      23457777777887777776643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.99  E-value=0.1  Score=41.82  Aligned_cols=69  Identities=14%  Similarity=0.069  Sum_probs=35.8

Q ss_pred             ChhHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695          581 CRTAYNQVIENLCSFGYLEE---AGKILGKVLRTASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD  651 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  651 (701)
                      +..+-..+++++.+..+...   ++.+++.+.+.+.+ -.......|+-++.+.|++++|+.+++.+++  +.|+
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~  106 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ  106 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence            34555555555555544433   55555555543210 1223344455566666666666666666666  4443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.93  E-value=1  Score=38.70  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMM  538 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~  538 (701)
                      ..|..|.......|+++-|.+.|.
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~   58 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQ   58 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Confidence            334444444444444444444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.84  E-value=6.1  Score=43.76  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=14.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHch
Q 037695          249 YNCLIKGYCDLHRIKDAIKLIDEMP  273 (701)
Q Consensus       249 ~~~li~~~~~~g~~~~A~~~~~~m~  273 (701)
                      |..++.++.+.++.+.+.++|..+.
T Consensus       233 y~~a~~~ai~LnD~~li~~if~~l~  257 (963)
T 4ady_A          233 YLTLNKVVVNLNDAGLALQLFKKLK  257 (963)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444555556666666666666654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.41  E-value=0.26  Score=40.62  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHh
Q 037695          511 DPDTVTYTTIIDALSKNGRV------EEATELMMKMLSKGLVPTVV----TYRTVIH---RYCQVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~  577 (701)
                      +-|..+|-..+...-+.|++      ++..++|++.... +||+..    .|..|--   .+...+++++|.++|+.+++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34566666666666666777      7777788877764 555421    1111111   12344899999999999977


Q ss_pred             cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          578 KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       578 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      .+.. ..+|...+..-.+.|++..|.+++.+++..++.|.
T Consensus        89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            6433 55666667777789999999999999998776644

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.98  E-value=0.82  Score=37.34  Aligned_cols=66  Identities=14%  Similarity=-0.001  Sum_probs=31.2

Q ss_pred             CChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          580 KCRTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       580 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      |+..+-..+++++.+..+   ..+++.+++.+.+..+.........|+-++.+.|++++|..+.+.+++
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            334444445555554433   234455555555433322333334444455555555555555555555

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.86  E-value=0.38  Score=38.73  Aligned_cols=64  Identities=14%  Similarity=0.003  Sum_probs=28.5

Q ss_pred             hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          582 RTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +.+-..+++++.+..+   ..+++.+++.+.+.++.-....+..|+-++.+.|++++|+.+.+.+++
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            4444444445544432   234444454444433222233334444445555555555555555544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.78  E-value=0.86  Score=37.23  Aligned_cols=76  Identities=8%  Similarity=-0.028  Sum_probs=61.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695          613 SKADASTCHVLVESYLNKGIP---LLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS  688 (701)
Q Consensus       613 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  688 (701)
                      ..|++.+-..++|++.+..+.   .+++.+++.+.+.+..-.......++-++.+.|++++|.++.+.+++..|.....
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            367888888999999998865   4788999999884433234777778999999999999999999999988755443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.78  E-value=5.4  Score=40.59  Aligned_cols=93  Identities=15%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCh----hH
Q 037695          518 TTIIDALSKNGRVEEATELMMKMLSK--GLVPT---VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK----QKCR----TA  584 (701)
Q Consensus       518 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~----~~  584 (701)
                      ..|...|...|++.+|..++..+...  |..+.   ...+...++.|...+++..|..++.++...    .+.+    ..
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            44555566666666666666655432  21111   234445556666666666666666655321    1111    23


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      +...+..+...+++.+|...|.++.+
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            34455555566666666666665543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.76  E-value=0.28  Score=53.15  Aligned_cols=52  Identities=21%  Similarity=0.108  Sum_probs=33.9

Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          625 ESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      ..+...|+++.|++++++++.  ..|+ ..+|..|+.+|...|+++.|+-.++.+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            345556677777777777666  4554 466667777777777777777666655

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.72  E-value=3  Score=35.75  Aligned_cols=99  Identities=8%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 037695          349 FCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEA  428 (701)
Q Consensus       349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A  428 (701)
                      ....|+++.|.++.+.+      -+...|..|.......|+++-|.+.|.....         +..+.-.|.-.|+.+..
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34566677666665554      1456666666666666666666666655443         33444455555555554


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          429 CDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQ  468 (701)
Q Consensus       429 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  468 (701)
                      ..+-+.....|-      ++.....+.-.|+++++..+|.
T Consensus        80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence            444444333331      2333334444555555555553

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.40  E-value=6.4  Score=40.01  Aligned_cols=187  Identities=10%  Similarity=0.084  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcC
Q 037695          458 GKMDGAKKFMQECLNK-----GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL----SKNG  528 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g  528 (701)
                      |+++.|...+..+.+.     ...........++..|...|+++...+.+.-+.+.... -......+++.+    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence            6778887777655432     23445666777888888888888887777666542211 122223333322    2233


Q ss_pred             CHHHHHH--HHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC-----hhHHHHHHHHHH
Q 037695          529 RVEEATE--LMMKMLS--KG-LVP---TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--QKC-----RTAYNQVIENLC  593 (701)
Q Consensus       529 ~~~~A~~--~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~-----~~~~~~l~~~~~  593 (701)
                      ..+....  +.+....  .| +-.   .......|...+...|++.+|..++..+...  +..     ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3222111  1111111  11 111   1223355667777778888888777776543  111     234555667777


Q ss_pred             hcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          594 SFGYLEEAGKILGKVLR----TASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       594 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..+++..|..++.++..    ....|+  ...+..++..+...+++.+|...|..+..
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            77777777777776532    111222  12345556666677777777776666655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.31  E-value=0.78  Score=36.93  Aligned_cols=65  Identities=11%  Similarity=0.109  Sum_probs=29.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695          546 VPTVVTYRTVIHRYCQVGRV---EDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLR  610 (701)
Q Consensus       546 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  610 (701)
                      .|++.+-..+..++.++.+.   .+++.+++.+....|.  ...+-.++-++.+.|++++|.+..+.+++
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            34444444444444444332   2344444444444442  23334444444455555555555555444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.25  E-value=0.36  Score=40.67  Aligned_cols=122  Identities=12%  Similarity=0.053  Sum_probs=68.9

Q ss_pred             CCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          544 GLVPTVVT--YRTVIHRYCQVGRVEDLLKLLEKMLSK---QKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       544 ~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      |+.|....  +..-+..+...|.++.|+-+...++..   +|+       ..++..+++++...|++..|...|+++++.
T Consensus        13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            55554433  444566777888999888777765443   333       125667788888889999999998887654


Q ss_pred             CC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          612 AS--KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF  678 (701)
Q Consensus       612 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (701)
                      ..  .-+......+.    .......         .....++...-..++.+|.+.|++++|+.+++.+
T Consensus        93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            21  11111111110    0000000         0112334567778999999999999999999765

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.65  E-value=3.4  Score=33.33  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=25.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHH-HhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          556 IHRYCQVGRVEDLLKLLEKM-LSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      +..+...|+-++..+++..+ ....|+++.+-.++.+|.+.|+..+|.+++.++-+.|
T Consensus        98 Ld~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           98 LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            34444444444444444443 2222334444444444444444444444444444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.14  E-value=0.77  Score=49.74  Aligned_cols=124  Identities=14%  Similarity=0.058  Sum_probs=67.8

Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCCC-H--
Q 037695          483 TSLIRGFCQKGD-LEEALSLLDDMYLCKKDPDTVTY--TTIIDALSKNG-RVEEATELMMKMLSK------GLVPT-V--  549 (701)
Q Consensus       483 ~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~p~-~--  549 (701)
                      ..++..+...++ ++.|+.+|+++...  .|...++  ..++..+...+ +--+|.+++.+.++.      ..++. .  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            344444444555 57788888887764  3333222  22333332222 223455555554421      11111 1  


Q ss_pred             --------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          550 --------VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       550 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                              ..+..-+..|...|+++.|+++.+++...-|+ ..+|..|+.+|...|+++.|+-.+..+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                    11222234455667777777777777777776 677777777777777777777666654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.29  E-value=12  Score=36.95  Aligned_cols=166  Identities=12%  Similarity=0.010  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH-
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDP---DTVTYTTIIDALSKN-GRVEEATELMMKMLSKGLVPTVVTY-  552 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~-  552 (701)
                      ......|...|.+.|+.++...++...+..= .-|   .......++..+... +..+.-.+++.+.++.. .-...+| 
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl   97 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3455677888899999999888888765311 111   123355667766653 33444455555544321 0011122 


Q ss_pred             -----HHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH
Q 037695          553 -----RTVIHRYCQVGRVEDLLKLLEKMLSKQ-----KC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTA--SKADAS  618 (701)
Q Consensus       553 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~  618 (701)
                           ..++..|...|++.+|.+++.++...-     +.  ..++..-+..|...+++.++...+.++....  +.+++.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence                 256777888888888888877776541     11  3455556677778888888888887765432  223433


Q ss_pred             HHH----HHHHHHH-hcCChhhHHHHHHHHHh
Q 037695          619 TCH----VLVESYL-NKGIPLLAYKVACRMFN  645 (701)
Q Consensus       619 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~~  645 (701)
                      +..    .-+-.+. ..++|..|...|-+..+
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            221    1233455 67788888777766654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.27  E-value=10  Score=36.02  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=89.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHHH
Q 037695          483 TSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATEL----MMKMLSKGLVPTVVTYRTVIHR  558 (701)
Q Consensus       483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~  558 (701)
                      .++..-|.+.+++++|++++..-.               ..+.+.|+...|..+    .+-..+.+++++......++..
T Consensus        37 Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           37 RTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            345555667777777777765432               123344554444433    3333445666666666666665


Q ss_pred             HHhcCCHH-HHHHHHHHHHh--------cCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695          559 YCQVGRVE-DLLKLLEKMLS--------KQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN  629 (701)
Q Consensus       559 ~~~~g~~~-~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  629 (701)
                      +.....-+ .=.++++++++        ...++..+..++..|.+.|++.+|...|-.    +..-++..+..++.-+.+
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~  177 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLC  177 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHH
Confidence            54422111 11223333221        123467888889999999999998887742    111135556555554444


Q ss_pred             c---CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          630 K---GIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER  681 (701)
Q Consensus       630 ~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (701)
                      .   |...++--+              +...++ .|+-.|+...|..++....++
T Consensus       178 ~~~~~~~~e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          178 QVDDIEDSTVAEF--------------FSRLVF-NYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HTTCCCHHHHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred             hcCCCCcchHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence            4   433332111              111222 355578888888888776543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=91.09  E-value=11  Score=36.08  Aligned_cols=81  Identities=17%  Similarity=0.056  Sum_probs=50.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695          581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE  660 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  660 (701)
                      ++.....++..|.+.+++.+|...|-    .+..+.+..+..++.-+.+.+...++-              .-+...+ -
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~d--------------lfiaRaV-L  195 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAP--------------LYCARAV-L  195 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHH--------------HHHHHHH-H
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHH--------------HHHHHHH-H
Confidence            46778888999999999999988873    233434466656655554444322221              1122222 2


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 037695          661 RLILEGKSEEADTLMLRFVE  680 (701)
Q Consensus       661 ~~~~~g~~~~A~~~~~~~~~  680 (701)
                      .|+-.++...|..++..+.+
T Consensus       196 ~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          196 PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH
Confidence            45668888989887766654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.68  E-value=24  Score=39.21  Aligned_cols=253  Identities=15%  Similarity=0.094  Sum_probs=117.6

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHHHH
Q 037695          384 LCHNGKSLEAREMINTSEEEWWTPN--AITYSVVMHGLRREGKLSEACDVVREMVKKGF--F-----PTPVEINLLIQSL  454 (701)
Q Consensus       384 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~-----~~~~~~~~li~~~  454 (701)
                      ....|+.++++.++......+-..+  ...-..+.-+....|..+++..++...+...-  .     +....-..+.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4455666666666655443110112  12222333344555655567776666554321  0     1111112222222


Q ss_pred             HhcCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCC
Q 037695          455 CREGK-MDGAKKFMQECLNKGCAVNVVNFT--SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTII--DALSKNGR  529 (701)
Q Consensus       455 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~  529 (701)
                      +-.|. -+++...+..++.... +......  ++...|.-.|+.+....++..+.+.   .+..+...+.  -++...|+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred             HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence            22222 2344455555444311 1111122  2233344566766666676666542   1223333333  33446677


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695          530 VEEATELMMKMLSKGLVPTVVTYR---TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL  605 (701)
Q Consensus       530 ~~~A~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  605 (701)
                      .+.+..+.+.+.... .|.. -|.   ++.-+|+..|+.....+++..+.....+ ......++-++...|+.+.+.+++
T Consensus       540 ~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          540 QELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             hHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            777777777776531 2222 222   2334566777776666677777654221 222233333444456655566666


Q ss_pred             HHHHHcCCCCCHHHHHH--HHHHHHhcCCh-hhHHHHHHHHHh
Q 037695          606 GKVLRTASKADASTCHV--LVESYLNKGIP-LLAYKVACRMFN  645 (701)
Q Consensus       606 ~~~~~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~~~~~~~~  645 (701)
                      ..+.+.+   |+.+-..  ++-+....|+. .+++..+..+..
T Consensus       618 ~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          618 QLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            5554422   3333323  33334444443 467777777764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.30  E-value=8.6  Score=44.65  Aligned_cols=191  Identities=8%  Similarity=0.048  Sum_probs=110.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------
Q 037695          449 LLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK------------------  510 (701)
Q Consensus       449 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------------------  510 (701)
                      .++..+...+..+.+..+...+     +.+...--.+..+|...|++++|...|.+... |+                  
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence            3455555666666655544322     22444434455667777777777777765421 11                  


Q ss_pred             -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695          511 -----DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV----VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC  581 (701)
Q Consensus       511 -----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  581 (701)
                           ..-..-|..++..+.+.+.++.+.++-...++..-+.+.    ..|..+.+.+...|++++|...+-.+....-.
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r  970 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK  970 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence                 011234677778888888888888887776654212222    25777888888999999998888777655444


Q ss_pred             hhHHHHHHHHHHhcCCHH------------HHHHHHHHHHH-c-CCCCCHHHHHHHHHHHHhcCChhhHH-HHHHHHHh
Q 037695          582 RTAYNQVIENLCSFGYLE------------EAGKILGKVLR-T-ASKADASTCHVLVESYLNKGIPLLAY-KVACRMFN  645 (701)
Q Consensus       582 ~~~~~~l~~~~~~~g~~~------------~A~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  645 (701)
                      ...+..++..+|..|..+            +...++..-.+ . .+...+.-|..|-.-+...|++..|- -+|+++.+
T Consensus       971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            667777777777666543            33334332211 1 11112233444444456677776544 45565554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=89.58  E-value=2.7  Score=31.77  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN  591 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~  591 (701)
                      +.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+..+-.+ ..+|..++.-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence            45567777888888888999999999999999999999999999888766433 5566666543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.57  E-value=8.2  Score=35.51  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChh
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA--STCHVLVESYLNKGIPL  634 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~  634 (701)
                      ...+.|++++|++.+...++.+|. ...-..++..||-.|+++.|.+-++...+..+...+  ..|..+|.+        
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a--------   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA--------   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--------
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH--------
Confidence            345667777777777776666666 455556677777777777777777766665432111  123333321        


Q ss_pred             hHHHHHHHHHhCCCCC-----CHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCC
Q 037695          635 LAYKVACRMFNRNLIP-----DLKLCKKVSERLI--LEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       635 ~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                        ...=.....-+-.|     .......++.++.  ..|+.++|..+-..+.+.-+..+
T Consensus        78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence              11111222222222     2244445555554  46889999998888888765443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.51  E-value=1.8  Score=36.48  Aligned_cols=30  Identities=17%  Similarity=0.245  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037695          550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ  579 (701)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  579 (701)
                      +.-..+..+|.+.+++++|+.+++.+..+.
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~  152 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGIPSRQ  152 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence            333344555555555555555555544433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.87  E-value=19  Score=35.54  Aligned_cols=167  Identities=10%  Similarity=0.034  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHH--
Q 037695          410 ITYSVVMHGLRREGKLSEACDVVREMVKK-GFFPT---PVEINLLIQSLCREG-KMDGAKKFMQECLNKGCAVNVVNF--  482 (701)
Q Consensus       410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~---~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~--  482 (701)
                      .....+...|.+.|+.++..+++...... +..|.   ......++..+.... ..+.-..+..+..+.. ...-.+|  
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            45566788888888888888888765432 11121   234566677666533 3333344444333320 0111222  


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHH
Q 037695          483 ----TSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-----TVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVPTVVT  551 (701)
Q Consensus       483 ----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~  551 (701)
                          .-++..|...|++.+|.+++.++.+.=...|     ...|..-++.|...+++.++...+......  .+.+++.+
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence                1466777778888888777777764211111     123455566677777777777777766543  23233332


Q ss_pred             HHH----HHHHHH-hcCCHHHHHHHHHHHHh
Q 037695          552 YRT----VIHRYC-QVGRVEDLLKLLEKMLS  577 (701)
Q Consensus       552 ~~~----l~~~~~-~~g~~~~A~~~~~~~~~  577 (701)
                      -..    -...+. ..++|..|...|-+...
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            211    122344 56777777777666543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.71  E-value=4  Score=40.67  Aligned_cols=57  Identities=14%  Similarity=0.112  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKV  608 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  608 (701)
                      ...++..+...|++++|...+..+...+|. ...+..++.+|.+.|+..+|.+.|+..
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344455555666666666666666666665 445666666666666666666666554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.19  E-value=17  Score=42.26  Aligned_cols=84  Identities=13%  Similarity=0.003  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADA----STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVS  659 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  659 (701)
                      -|..++..+.+.|.++.+.++...+++.....+.    ..|..+...+...|++++|...+-.+-....  -......++
T Consensus       901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV  978 (1139)
T 4fhn_B          901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence            3556666777777777777777777665433232    2466677777888888888777766655322  345666666


Q ss_pred             HHHHhcCCHH
Q 037695          660 ERLILEGKSE  669 (701)
Q Consensus       660 ~~~~~~g~~~  669 (701)
                      ..++..|..+
T Consensus       979 ~~lce~~~~~  988 (1139)
T 4fhn_B          979 NQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHCCHH
T ss_pred             HHHHhCCChh
Confidence            6666555433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.17  E-value=5.3  Score=39.77  Aligned_cols=70  Identities=13%  Similarity=-0.020  Sum_probs=39.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhhHH
Q 037695          586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-----RNLIPDLKLCK  656 (701)
Q Consensus       586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  656 (701)
                      ..++..+...|++.+|+..+..++... +.+...+..++.+|...|+..+|+..|+++.+     .|+.|...+-.
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            344555555666666666666655543 33555666666666666666666666655433     35666554433

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=85.16  E-value=4.3  Score=30.68  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          427 EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI  486 (701)
Q Consensus       427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  486 (701)
                      ++..-++.+....+.|.+.+..+.+++|-+.+++..|.++++.++.+ +.+...+|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l   86 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   86 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence            44444555555566666666666666666666666666666666554 222333444443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.25  E-value=11  Score=30.18  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChhHHHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-KCRTAYNQVIEN  591 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~  591 (701)
                      +.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+..+- +...+|..++.-
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE  131 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE  131 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence            344567777888888899999999999999999999999999999887764 335567666543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=83.69  E-value=31  Score=32.79  Aligned_cols=81  Identities=11%  Similarity=0.004  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695          547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSF---GYLEEAGKILGKVLRTASKADASTCHVL  623 (701)
Q Consensus       547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l  623 (701)
                      -++.....+...|.+.|++.+|...|-  ....-++..+..++.-+...   |...++--++.+               .
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i--~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R---------------a  194 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFM--LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR---------------L  194 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH---------------H
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHH--hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH---------------H
Confidence            367888888888999999998887763  11111234444444433333   444443222222               1


Q ss_pred             HHHHHhcCChhhHHHHHHHHH
Q 037695          624 VESYLNKGIPLLAYKVACRMF  644 (701)
Q Consensus       624 ~~~~~~~g~~~~A~~~~~~~~  644 (701)
                      +-.|+..|+...|...+....
T Consensus       195 VL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          195 VFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHH
Confidence            224556677777777766554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.84  E-value=4.8  Score=37.02  Aligned_cols=60  Identities=23%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      ..+.+.|++++|+..+...++.. +.|...-..|+..+|-.|+++.|.+.++.+.+  +.|+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~   64 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEY   64 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchh
Confidence            34567899999999999988876 44888888899999999999999999999988  56654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	701
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 50/372 (13%), Positives = 108/372 (29%), Gaps = 46/372 (12%)

Query: 294 EKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQ------------------------ 329
            +  ++  D    ++  S++     R++ +                              
Sbjct: 23  MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82

Query: 330 -------MSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLN 382
                        +        +      V   D    +   +      P+     + L 
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

Query: 383 GLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFP 442
            L      LE  +       E     A+ +S +      +G++  A     + V     P
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DP 200

Query: 443 TPVEI-NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSL 501
             ++    L   L      D A       L+      VV+  +L   + ++G ++ A+  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-NLACVYYEQGLIDLAIDT 259

Query: 502 LDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ 561
                  +       Y  + +AL + G V EA +     L         +   + +   +
Sbjct: 260 YRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317

Query: 562 VGRVEDLLKLLEKMLS-KQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTC 620
            G +E+ ++L  K L    +   A++ +   L   G L+EA     + +R +        
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------ 371

Query: 621 HVLVESYLNKGI 632
               ++Y N G 
Sbjct: 372 --FADAYSNMGN 381

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	701
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.25
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.24
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.21
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.19
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.15
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.1
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.06
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.85
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.63
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.58
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.38
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.26
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.23
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.17
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.1
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.09
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.05
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.78
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.78
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.71
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.7
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.59
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.57
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.29
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.26
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.63
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.4
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.94
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.14
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.19
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	88.15
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	84.5

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-21  Score=195.47  Aligned_cols=380  Identities=11%  Similarity=0.031  Sum_probs=241.5

Q ss_pred             HHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHc
Q 037695          254 KGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQM  333 (701)
Q Consensus       254 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~  333 (701)
                      ..+.+.|++++|.+.++++.+.. +-+...+..+..++.+.|++++|...++.+++                       .
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----------------------~   62 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-----------------------Q   62 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------H
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------h
Confidence            34445555555555555554431 11344455555555555555555555544433                       1


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695          334 GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS  413 (701)
Q Consensus       334 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  413 (701)
                       -+-+..+|..+..+|.+.|++++|+..+....... +.+..............+....+........... ........
T Consensus        63 -~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  139 (388)
T d1w3ba_          63 -NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRS  139 (388)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHH
T ss_pred             -CCCCHHHHHHHHHHhhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccc
Confidence             01234556666666666666666666666666543 2233333333333444444444444444333322 23333444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          414 VVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG  493 (701)
Q Consensus       414 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  493 (701)
                      .........+....+...+....... +.+...+..+...+...|+++.|...+....+.. +.+...|..+...+...|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~  217 (388)
T d1w3ba_         140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR  217 (388)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             cccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccc
Confidence            44555556666666666666665553 3455666666777777777777777777776652 335666777777777788


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE  573 (701)
Q Consensus       494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  573 (701)
                      ++++|+..++...... +.+...+..+..++...|++++|...|++..+.. +-+..++..+...+...|++++|++.++
T Consensus       218 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~  295 (388)
T d1w3ba_         218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8888888887776643 3455667777777788888888888888877753 4456777778888888888888888888


Q ss_pred             HHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-
Q 037695          574 KMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-  651 (701)
Q Consensus       574 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-  651 (701)
                      .+....|. ...+..++.++...|++++|+..++++++..+. ++.++..++.+|...|++++|+..++++++  +.|+ 
T Consensus       296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~  372 (388)
T d1w3ba_         296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF  372 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred             hhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence            87777766 567777788888888888888888888776533 567777788888888888888888888887  5554 


Q ss_pred             HhhHHHHHHHHHhcCC
Q 037695          652 LKLCKKVSERLILEGK  667 (701)
Q Consensus       652 ~~~~~~l~~~~~~~g~  667 (701)
                      ...+..++.+|.+.|+
T Consensus       373 ~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         373 ADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            4677778877777664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-20  Score=192.48  Aligned_cols=381  Identities=14%  Similarity=0.065  Sum_probs=236.0

Q ss_pred             HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChh
Q 037695          184 VAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIK  263 (701)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  263 (701)
                      ..+.+.|++++|.++|+++.+.. +-++..+..+..++.+.|++++|...|++..+.. +-+..+|..+..+|.+.|+++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence            34445566666666666555442 3344555555555555555555555555555432 223445555555555555555


Q ss_pred             HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHH
Q 037695          264 DAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYT  343 (701)
Q Consensus       264 ~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  343 (701)
                      +|++.+....... +                                                          .+.....
T Consensus        85 ~A~~~~~~~~~~~-~----------------------------------------------------------~~~~~~~  105 (388)
T d1w3ba_          85 EAIEHYRHALRLK-P----------------------------------------------------------DFIDGYI  105 (388)
T ss_dssp             HHHHHHHHHHHHC-T----------------------------------------------------------TCHHHHH
T ss_pred             ccccccccccccc-c----------------------------------------------------------ccccccc
Confidence            5555555554432 1                                                          1222222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 037695          344 AVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREG  423 (701)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  423 (701)
                      .........+....+........... .................+....+...+....... +.+...+..+...+...|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  183 (388)
T d1w3ba_         106 NLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQG  183 (388)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccC
Confidence            22222333333333333333333222 1222333333344444555555555555544432 233445555566666666


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695          424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD  503 (701)
Q Consensus       424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  503 (701)
                      .+++|...++..++.. +-+...+..+...+...|++++|...+....... +.+...+..+...+.+.|++++|+..|+
T Consensus       184 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  261 (388)
T d1w3ba_         184 EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            7777777666666553 3355566667777777777777777777776653 3456667777777888888888888888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h
Q 037695          504 DMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R  582 (701)
Q Consensus       504 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~  582 (701)
                      +..+.. +.+..++..+..++...|++++|...++...... +.+...+..+...+...|++++|++.|+++++..|+ .
T Consensus       262 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  339 (388)
T d1w3ba_         262 RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            877643 3346677778888888888888888888877753 667778888888888888888888888888888887 6


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI  632 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  632 (701)
                      .++..++.+|...|++++|+..|+++++..+. ++..|..++.+|.+.||
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            77888888888888888888888888876533 67788888888877775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.8e-14  Score=138.89  Aligned_cols=253  Identities=15%  Similarity=0.073  Sum_probs=165.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037695          416 MHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL  495 (701)
Q Consensus       416 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  495 (701)
                      ...+.+.|++++|+..|+++++.. |-+..+|..+..++...|+++.|...+.++.+.. +-+...|..+..+|...|++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence            334455555555555555555542 3344555555555555555555555555555442 22445555555555566666


Q ss_pred             HHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 037695          496 EEALSLLDDMYLCKKD--------------PDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-LVPTVVTYRTVIHRYC  560 (701)
Q Consensus       496 ~~A~~~~~~~~~~~~~--------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~  560 (701)
                      ++|.+.++........              .+.......+..+...+.+.+|...|.+..... -.++..++..+...+.
T Consensus       104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~  183 (323)
T d1fcha_         104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN  183 (323)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred             cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            6666665555442110              000111122233445566778888888877642 2345777888888899


Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 037695          561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKV  639 (701)
Q Consensus       561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  639 (701)
                      ..|++++|+..+++++...|+ ..++..++.+|...|++++|+..++++++..+. ++.++..++.+|...|++++|+..
T Consensus       184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999888887 778888999999999999999999999887643 678888999999999999999999


Q ss_pred             HHHHHhCCCCCC------------HhhHHHHHHHHHhcCCHHHHHH
Q 037695          640 ACRMFNRNLIPD------------LKLCKKVSERLILEGKSEEADT  673 (701)
Q Consensus       640 ~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~~~~A~~  673 (701)
                      |+++++  +.|+            ..++..+..++...|+.+.+..
T Consensus       263 ~~~al~--l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         263 FLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHH--hCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999887  3332            1345556666666676655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.8e-14  Score=140.63  Aligned_cols=232  Identities=12%  Similarity=0.048  Sum_probs=192.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695          449 LLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG  528 (701)
Q Consensus       449 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  528 (701)
                      .....+.+.|++++|...|+++++.. |-+...|..+..+|...|++++|+..|.+..+.. +-+...|..++.+|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            34556789999999999999999873 4478899999999999999999999999998743 335778888999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVPTV----------------VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVI  589 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~  589 (701)
                      ++++|.+.++++....  |+.                ......+..+...+.+.+|...+.+++...|.   ..++..++
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            9999999999988742  221                11112233445567788999999999888776   56778899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCH
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKS  668 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  668 (701)
                      ..+...|++++|+..+++++...+. +..+|..++..|...|++++|+..++++++  ..|+ ..++..++.+|.+.|++
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999987644 788999999999999999999999999999  4554 57888999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCc
Q 037695          669 EEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       669 ~~A~~~~~~~~~~~~~~~~  687 (701)
                      ++|+..|+++++..|..+.
T Consensus       257 ~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         257 REAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHhCCcChh
Confidence            9999999999997765544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-10  Score=112.20  Aligned_cols=215  Identities=9%  Similarity=0.030  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG-DLEEALSLLDDMYLCKKDPDTVTYTTIIDA  523 (701)
Q Consensus       445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~  523 (701)
                      ..++.+...+.+.+.+++|+.+++++++.. |-+...|+....++...| ++++|+..++...+.. +-+..+|..+..+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            345566666777788888888888888763 446677788887877766 4888999988887743 3457788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC-----
Q 037695          524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY-----  597 (701)
Q Consensus       524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-----  597 (701)
                      +...|++++|+..++++++.. +.+...|..+...+.+.|++++|++.++++++.+|. ..+|+.++.++.+.+.     
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence            888999999999999998864 556888888888999999999999999999998887 6788888777776655     


Q ss_pred             -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh
Q 037695          598 -LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLIL  664 (701)
Q Consensus       598 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  664 (701)
                       +++|+..+.++++..+. +...|..+...+.. ...+++.+.++.+.+....+. ...+..++.+|..
T Consensus       201 ~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence             67888888888887643 77888777766544 446778888888877333322 3455566666643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=2.7e-09  Score=103.04  Aligned_cols=193  Identities=9%  Similarity=-0.037  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLL  572 (701)
Q Consensus       493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  572 (701)
                      +..++|..+|++..+...+.+...|...+..+...|+++.|..+|+++++.........|...+..+.+.|+++.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34577788888877654444566677777777888888888888888877532223456778888888888888888888


Q ss_pred             HHHHhcCCC-hhHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-C
Q 037695          573 EKMLSKQKC-RTAYNQVIENL-CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNL-I  649 (701)
Q Consensus       573 ~~~~~~~p~-~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~  649 (701)
                      +++++..|. ...+...+... ...|+.+.|..+|+.++... +.++..|..++..+...|+++.|..+|+++++... .
T Consensus       158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            888887776 44555544443 34578888888888888764 44678888888888888888888888888887542 3


Q ss_pred             CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          650 PD--LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       650 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                      |+  ..+|..++.--...|+.+.+.++++++.+..+..+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            32  24666666666677888888888888888776443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.9e-10  Score=109.20  Aligned_cols=202  Identities=9%  Similarity=0.040  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695          479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG-RVEEATELMMKMLSKGLVPTVVTYRTVIH  557 (701)
Q Consensus       479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  557 (701)
                      ...++.+...+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|+..++..++.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            3456667778889999999999999999843 334567888888888876 5899999999998864 557889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 037695          558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI----  632 (701)
Q Consensus       558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  632 (701)
                      .+.+.|++++|+..++++++.+|. ..+|..++.++...|++++|+..++++++.++. +...|+.++..+.+.|.    
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence            999999999999999999999998 789999999999999999999999999998744 78889888888777765    


Q ss_pred             --hhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          633 --PLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP  686 (701)
Q Consensus       633 --~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  686 (701)
                        +++|+..+.++++  ..|+ ...+..++..+ .....+++.+.++++.+..+...
T Consensus       200 ~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~  253 (315)
T d2h6fa1         200 AVLEREVQYTLEMIK--LVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHS  253 (315)
T ss_dssp             HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCC
T ss_pred             hhhHHhHHHHHHHHH--hCCCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcC
Confidence              5789999999999  5554 56666666554 45557889999999988877544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4e-09  Score=104.17  Aligned_cols=269  Identities=12%  Similarity=0.053  Sum_probs=176.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 037695          377 YTAFLNGLCHNGKSLEAREMINTSEEEWWTPN----AITYSVVMHGLRREGKLSEACDVVREMVKKGF-FPT----PVEI  447 (701)
Q Consensus       377 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~  447 (701)
                      .......+...|++++|..++++..+.....+    ...+..+...+...|++++|...+++..+... .++    ...+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            33445567788999999999888876531111    23566677788888899999888887765311 111    2345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHH
Q 037695          448 NLLIQSLCREGKMDGAKKFMQECLNK----GCAV---NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK----DPDTVT  516 (701)
Q Consensus       448 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~  516 (701)
                      ..+...+...|++..+...+......    +.+.   ....+..+...+...|+++.+...+........    ......
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            56666777888888888888776542    1111   123455566777888888888888877764221    222445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----hhHH
Q 037695          517 YTTIIDALSKNGRVEEATELMMKMLSK--GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-----RTAY  585 (701)
Q Consensus       517 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~  585 (701)
                      +..+...+...+++..+...+......  .....    ...+..+...+...|++++|...+++.....+.     ...+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            566666777788888888877766542  11111    223455566677788888888888877765443     2345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          586 NQVIENLCSFGYLEEAGKILGKVLRT----ASKAD-ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       586 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      ..++..+...|++++|...+++++..    +..|+ ..++..++..|...|++++|++.++++++
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56777888888888888888877633    22222 34567777888888888888888888877

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3e-09  Score=102.73  Aligned_cols=187  Identities=14%  Similarity=0.076  Sum_probs=152.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695          458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM  537 (701)
Q Consensus       458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  537 (701)
                      +..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+++.|..+|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34578888999988765566777888888999999999999999999987543333557888999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C
Q 037695          538 MKMLSKGLVPTVVTYRTVIHR-YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-K  614 (701)
Q Consensus       538 ~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~  614 (701)
                      .++++.+ +.+...|...+.. +...|+.+.|..+|+.++...|. ...+..++..+...|+++.|..+|+++++..+ .
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            9998864 4455555555543 34468999999999999998887 77899999999999999999999999988653 2


Q ss_pred             C--CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          615 A--DASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       615 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      |  ....|...+..-...|+.+.+.++++++.+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2  246788888888889999999999999877

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.5e-08  Score=99.84  Aligned_cols=271  Identities=13%  Similarity=0.058  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhh
Q 037695          341 TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN----TVSYTAFLNGLCHNGKSLEAREMINTSEEEWWT-PN----AIT  411 (701)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~  411 (701)
                      ........+...|++++|+.++++.+......+    ...+..+...|...|++++|...+.+....... ++    ...
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            344445667889999999999999887531111    245677788899999999999999987653211 11    234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHH
Q 037695          412 YSVVMHGLRREGKLSEACDVVREMVKK----GFFPT---PVEINLLIQSLCREGKMDGAKKFMQECLNKGC----AVNVV  480 (701)
Q Consensus       412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~  480 (701)
                      +..+...+...|++..+...+......    +....   ...+..+...+...|+++.+...+........    .....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            556677788999999999999876642    21211   23456677788899999999999988876422    22344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHH
Q 037695          481 NFTSLIRGFCQKGDLEEALSLLDDMYLC--KKDPD----TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP---TVVT  551 (701)
Q Consensus       481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~  551 (701)
                      .+......+...+++..+...+.+....  .....    ...+..+...+...|++++|...+..........   ....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            5566677788899999999988876531  11111    2345666777889999999999998877643222   2455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSK------QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT  611 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  611 (701)
                      +..+..++...|++++|...+++++..      .|. ..++..++.+|...|++++|...++++++.
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            667888999999999999999988643      122 457788899999999999999999998764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=5.6e-10  Score=105.11  Aligned_cols=200  Identities=11%  Similarity=-0.077  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037695          480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRY  559 (701)
Q Consensus       480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  559 (701)
                      .+|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..+|...|++++|+..|+++++.. +-+..++..+..++
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            345556667777777777777777776632 2345667777777777777777777777777753 33456677777777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695          560 CQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       560 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  638 (701)
                      ...|++++|...|++.++..|. ......+...+.+.+..+.+..+..........+  ..+ .++..+...........
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGW-NIVEFYLGNISEQTLME  192 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THH-HHHHHHTTSSCHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhh-hHHHHHHHHHHHHHHHH
Confidence            7777777787777777777765 3333344444455555555555544444432221  111 12222222111111111


Q ss_pred             HHHHHHhCC--CCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          639 VACRMFNRN--LIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       639 ~~~~~~~~~--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                      .........  ..|+. .++..++..|...|++++|+..|+++++..|.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  241 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            111111100  11222 45666788888888888888888888877654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=2.5e-10  Score=112.17  Aligned_cols=262  Identities=8%  Similarity=-0.064  Sum_probs=124.7

Q ss_pred             CHHHHHHHHHHHHhCCCCCCh-hhHHHHH---HHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          389 KSLEAREMINTSEEEWWTPNA-ITYSVVM---HGLRREG-------KLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE  457 (701)
Q Consensus       389 ~~~~A~~~~~~~~~~~~~~~~-~~~~~ll---~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  457 (701)
                      ..++|+.++..+.+..  |+. ..|+..-   ..+...+       .+++|+..++..++.. +-+...+..+..++...
T Consensus        44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence            3466777776666542  333 2333222   2222222       2455555555555542 33444444444444443


Q ss_pred             C--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695          458 G--KMDGAKKFMQECLNKGCAVNVVNFT-SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEAT  534 (701)
Q Consensus       458 g--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  534 (701)
                      +  ++++|...+..+.... +.+...+. .....+...+.+++|+..++.+.... +-+...|..+..++...|++++|.
T Consensus       121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence            3  3555665555555542 22333332 23344445555666666665555432 223455555555555555555554


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          535 ELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS  613 (701)
Q Consensus       535 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  613 (701)
                      ..+......  .|+   ...+...+...+..+++...+.+.....|. ...+..++..+...|+.++|...+.+.+...+
T Consensus       199 ~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  273 (334)
T d1dcea1         199 PQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK  273 (334)
T ss_dssp             SCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            444333321  111   111222333445555555555555555444 33444455555555556666665555544331


Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHH
Q 037695          614 KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLI  663 (701)
Q Consensus       614 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~  663 (701)
                      . +..++..++.+|...|++++|++.++++.+  +.|+. ..|..+...+.
T Consensus       274 ~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         274 W-CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             H-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHh
Confidence            1 344455555555566666666666666655  44432 34444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=5.1e-10  Score=109.89  Aligned_cols=215  Identities=9%  Similarity=-0.051  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHH
Q 037695          460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG--DLEEALSLLDDMYLCKKDPDTVTYT-TIIDALSKNGRVEEATEL  536 (701)
Q Consensus       460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~  536 (701)
                      +++|..+++.+.+.. +-+...|..+..++...+  ++++|+..+.++.... +++...+. .+...+...+.+++|+..
T Consensus        89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence            445555555554431 223444444444443333  2445555555544421 22233322 222334444555555555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695          537 MMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD  616 (701)
Q Consensus       537 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  616 (701)
                      ++.++... +-+...|..+..++.+.|++++|...+..+....|.   ...+...+...+..+++...+.+.+... +++
T Consensus       167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~  241 (334)
T d1dcea1         167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEP  241 (334)
T ss_dssp             HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCC
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cch
Confidence            55554433 233444555555555555555444433333322221   1112222333344444444444444433 223


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ...+..++..+...|++.+|+..+.+..+  ..|+ ...+..++.+|...|++++|+++++++++..|
T Consensus       242 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         242 LFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            33334444444445555555555554444  2222 24444455555555555555555555555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=7e-09  Score=97.36  Aligned_cols=199  Identities=13%  Similarity=-0.054  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695          446 EINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS  525 (701)
Q Consensus       446 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~  525 (701)
                      ++..+...|.+.|++++|...|++.+... |-++.+|+.+..+|.+.|++++|+..|+++.+.. +-+..++..+..+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            45556666777777777777777777652 4466777777777777777777777777777642 223556667777777


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhc----CCHHHH
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSF----GYLEEA  601 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A  601 (701)
                      ..|++++|...|+..++.. +.+......+...+.+.+..+.+..+........+....+.. +..+...    +..+.+
T Consensus       117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  194 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLMERL  194 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHHHH
Confidence            7777777777777777653 334444444444555555555555555544444333222221 2222111    122222


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695          602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD  651 (701)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  651 (701)
                      ...+....... +....+|..++..|...|++++|+..|++++.  ..|+
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~  241 (259)
T d1xnfa_         195 KADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH  241 (259)
T ss_dssp             HHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred             HHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC
Confidence            22222222211 11234566678888888888888888888887  4454

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.6e-08  Score=84.57  Aligned_cols=125  Identities=13%  Similarity=-0.040  Sum_probs=90.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHH
Q 037695          522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEE  600 (701)
Q Consensus       522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~  600 (701)
                      ..+...|+++.|++.|.++    .+|++.+|..+..+|...|++++|++.|+++++.+|. ..+|..++.++.+.|++++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            3456778888888777653    3567777777888888888888888888888888777 6777788888888888888


Q ss_pred             HHHHHHHHHHcCCC--------------CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695          601 AGKILGKVLRTASK--------------AD-ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP  650 (701)
Q Consensus       601 A~~~~~~~~~~~~~--------------~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  650 (701)
                      |+..|++++.....              ++ ..++..++.+|.+.|++++|.+.+.++.+....|
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            88888887653211              01 2455667777888888888888888887744443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.3e-08  Score=79.29  Aligned_cols=104  Identities=17%  Similarity=0.132  Sum_probs=59.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGK  667 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  667 (701)
                      -+..+...|++++|+..|+++++..+. ++..|..++.+|.+.|++++|+..+.++++.++. +...|..++.++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence            344555556666666666666555422 5555666666666666666666666666653222 34555556666666666


Q ss_pred             HHHHHHHHHHHHHcCCCCCchHHHHh
Q 037695          668 SEEADTLMLRFVERGHIQPKSEEHLQ  693 (701)
Q Consensus       668 ~~~A~~~~~~~~~~~~~~~~~~~~l~  693 (701)
                      +++|+..|+++++..|..+.....+.
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            66666666666666555554444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.2e-07  Score=74.34  Aligned_cols=101  Identities=10%  Similarity=-0.038  Sum_probs=78.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695          555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP  633 (701)
Q Consensus       555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  633 (701)
                      -...+.+.|++++|+..|+++++..|. +..|..++.+|...|++++|+..+.++++..+ .++..|..++.++...|++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence            456677888888888888888888877 67788888888888888888888888888764 3777888888888888888


Q ss_pred             hhHHHHHHHHHhCCCCCCH-hhHHHH
Q 037695          634 LLAYKVACRMFNRNLIPDL-KLCKKV  658 (701)
Q Consensus       634 ~~A~~~~~~~~~~~~~p~~-~~~~~l  658 (701)
                      ++|+..++++++  ..|+. .++..+
T Consensus        88 ~~A~~~~~~a~~--~~p~~~~~~~~l  111 (117)
T d1elwa_          88 EEAKRTYEEGLK--HEANNPQLKEGL  111 (117)
T ss_dssp             HHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            888888888887  45543 444333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.7e-07  Score=79.91  Aligned_cols=119  Identities=13%  Similarity=0.013  Sum_probs=86.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          553 RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       553 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                      ......|.+.|++++|+..|+++++.+|+ ...|..++.+|...|++++|+..|+++++..+. +...|..++.+|...|
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            34456777888888888888888888887 677888888888888888888888888887643 6778888888888888


Q ss_pred             ChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH--HHhcCCHHHHHHH
Q 037695          632 IPLLAYKVACRMFNRNLIPD-LKLCKKVSER--LILEGKSEEADTL  674 (701)
Q Consensus       632 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~  674 (701)
                      ++++|+..++++..  +.|+ ...+..+..+  +...+.+++|+..
T Consensus        93 ~~~eA~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          93 KFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888888  4444 3444444333  3334445555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.9e-07  Score=79.01  Aligned_cols=125  Identities=15%  Similarity=0.080  Sum_probs=101.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695          486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRV  565 (701)
Q Consensus       486 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  565 (701)
                      ...+...|+++.|++.|.++    .+|+..+|..+..+|...|++++|+..|++.++.. +.++..|..+..+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            45567788999999888865    36777888888999999999999999999998865 55688888889999999999


Q ss_pred             HHHHHHHHHHHhcCCC-----------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695          566 EDLLKLLEKMLSKQKC-----------------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA  615 (701)
Q Consensus       566 ~~A~~~~~~~~~~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  615 (701)
                      ++|++.|++++...+.                 ..++..++.++.+.|++++|.+.+..+++..+.+
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999988764221                 2456678889999999999999999998766554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.7e-07  Score=89.23  Aligned_cols=194  Identities=10%  Similarity=-0.019  Sum_probs=119.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 037695          486 IRGFCQKGDLEEALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSK----GL-VPTVVTYRTV  555 (701)
Q Consensus       486 l~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l  555 (701)
                      ...|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++|...+++....    |- .....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            45566777777777777766531    1111 1246677777777888888888777766542    10 0113345555


Q ss_pred             HHHHHh-cCCHHHHHHHHHHHHhcC---CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHH
Q 037695          556 IHRYCQ-VGRVEDLLKLLEKMLSKQ---KC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA------STCH  621 (701)
Q Consensus       556 ~~~~~~-~g~~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~  621 (701)
                      ...|.. .|++++|++.++++....   ..    ..++..++..+...|++++|...++++.........      ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            555643 588888888888776541   11    345677788888888888888888888775432221      2234


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCCCCCC------HhhHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 037695          622 VLVESYLNKGIPLLAYKVACRMFNRNLIPD------LKLCKKVSERLIL--EGKSEEADTLMLRFVER  681 (701)
Q Consensus       622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~  681 (701)
                      ..+..+...|++..|...++++.+  +.|.      ......++.++-.  .+.+++|+..|+++.+.
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH--hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            455567778888888888888877  3332      1344455555544  34578888877655443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=4.4e-08  Score=87.64  Aligned_cols=101  Identities=15%  Similarity=0.059  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695          511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI  589 (701)
Q Consensus       511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~  589 (701)
                      .|+...+......|.+.|++++|+..|.+.+... |.++..|..+..+|.+.|++++|+..|+++++..|+ ..+|..++
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            3677777888888999999999999998888764 567888888889999999999999999999988887 77888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcC
Q 037695          590 ENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       590 ~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      .+|...|++++|+..|+++++..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999999999999998887653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.2e-07  Score=79.18  Aligned_cols=107  Identities=15%  Similarity=0.015  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 037695          585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLI  663 (701)
Q Consensus       585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~  663 (701)
                      +...+..|.+.|++++|+..|.++++..+. +...|..++.+|...|++++|+..++++++  +.|+ ...+..++.+|.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHH
Confidence            445677889999999999999999998754 899999999999999999999999999999  4555 488999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          664 LEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       664 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      ..|++++|+..++++++..|..+....++..
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~  120 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQE  120 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999999999887777666544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=9.6e-08  Score=85.36  Aligned_cols=98  Identities=10%  Similarity=0.020  Sum_probs=89.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695          547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVE  625 (701)
Q Consensus       547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  625 (701)
                      |+...+......|.+.|++++|+..|++++...|. +.+|..++.+|.+.|++++|+..|+++++..+. +..+|..++.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence            77788888899999999999999999999999988 788999999999999999999999999887643 6888999999


Q ss_pred             HHHhcCChhhHHHHHHHHHh
Q 037695          626 SYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       626 ~~~~~g~~~~A~~~~~~~~~  645 (701)
                      +|...|++++|+..++++++
T Consensus        81 ~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999988

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.58  E-value=0.00014  Score=67.16  Aligned_cols=222  Identities=11%  Similarity=-0.001  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037695          446 EINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTII  521 (701)
Q Consensus       446 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li  521 (701)
                      .+..|...+...+++++|.+.|++..+.|   +...+..|...|..    ..+...|...+......+   +......+.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            34444444445555555555555555443   33334444444443    345555555555554433   222222222


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037695          522 DALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC----QVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLC  593 (701)
Q Consensus       522 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~  593 (701)
                      ..+..    ..+.+.|...++...+.|.   ......+...+.    .......+...+...... .....+..++..|.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~L~~~~~  153 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-NDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc-cccchhhhhhhhhc
Confidence            22221    3455566666666655541   222222222222    133445555555554432 23445555555555


Q ss_pred             h----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-
Q 037695          594 S----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL-  664 (701)
Q Consensus       594 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-  664 (701)
                      .    ..+...+...+..+.+.+   ++..+..++..|..    ..++++|+..|++..+.|   +...+..|+.+|.+ 
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G  227 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG  227 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred             cCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcC
Confidence            3    345666666666666533   55566666666654    456777777777777744   44555667766664 


Q ss_pred             ---cCCHHHHHHHHHHHHHcCC
Q 037695          665 ---EGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       665 ---~g~~~~A~~~~~~~~~~~~  683 (701)
                         ..++++|.++|+++.+.|.
T Consensus       228 ~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         228 EGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTC
T ss_pred             CCCccCHHHHHHHHHHHHHCcC
Confidence               3367777777777777774

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.4e-07  Score=74.30  Aligned_cols=92  Identities=13%  Similarity=0.086  Sum_probs=48.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 037695          554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKAD-ASTCHVLVESYL  628 (701)
Q Consensus       554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~  628 (701)
                      .+++.+...+++++|.+.|++++..+|. +.++..++.++.+.++   +++|+.+++++++..+.|+ ..++..++.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3445555555566666666666555555 4555555555554332   3345555555554432222 124455555555


Q ss_pred             hcCChhhHHHHHHHHHh
Q 037695          629 NKGIPLLAYKVACRMFN  645 (701)
Q Consensus       629 ~~g~~~~A~~~~~~~~~  645 (701)
                      +.|++++|+.+|+++++
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            55555555555555555

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.5e-06  Score=82.43  Aligned_cols=195  Identities=9%  Similarity=-0.030  Sum_probs=131.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHH
Q 037695          451 IQSLCREGKMDGAKKFMQECLNK----GCAV-NVVNFTSLIRGFCQKGDLEEALSLLDDMYL----CKK-DPDTVTYTTI  520 (701)
Q Consensus       451 i~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l  520 (701)
                      ...|...+++++|...|.++.+.    +.++ -..+|+.+..+|.+.|++++|++.+++...    .|. .....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            45677888888888888877653    1111 235678888888899999999988887653    111 1113456666


Q ss_pred             HHHHHh-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--------hHHH
Q 037695          521 IDALSK-NGRVEEATELMMKMLSK----GLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR--------TAYN  586 (701)
Q Consensus       521 i~~~~~-~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~  586 (701)
                      ...|.. .|++++|+..|.+..+.    +.++ -..++..++..+...|++++|++.|+++....+..        ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            666644 69999999999887642    2111 13457778899999999999999999988875541        2334


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHhc--CChhhHHHHHHHHHh
Q 037695          587 QVIENLCSFGYLEEAGKILGKVLRTASK-AD---ASTCHVLVESYLNK--GIPLLAYKVACRMFN  645 (701)
Q Consensus       587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~  645 (701)
                      ..+..+...|+++.|...++++.+..+. ++   ......++.++...  +.+++|+..|.++.+
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            5566677889999999999998776432 11   23445566665552  357788888766554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.9e-07  Score=73.73  Aligned_cols=105  Identities=10%  Similarity=-0.016  Sum_probs=77.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 037695          586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI---PLLAYKVACRMFNRNLIPDL-KLCKKVSER  661 (701)
Q Consensus       586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~  661 (701)
                      ..++..+...+++++|++.|++++..++ .++.++..+++++.+.++   +++|+.++++++..+..|+. .++..++.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            4566777778888888888888888763 377888888888876554   45688888888875444442 467778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCchHHH
Q 037695          662 LILEGKSEEADTLMLRFVERGHIQPKSEEH  691 (701)
Q Consensus       662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  691 (701)
                      |.+.|++++|+++|+++++..|..+.....
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l  111 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKEL  111 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence            888888888888888888888766554433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.50  E-value=5.2e-07  Score=71.31  Aligned_cols=88  Identities=13%  Similarity=0.015  Sum_probs=44.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 037695          588 VIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEG  666 (701)
Q Consensus       588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  666 (701)
                      ++..+.+.|++++|+..++++++..+. ++.+|..++.++...|++++|+..++++++  +.|+ ...+..++.+|...|
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCC
Confidence            344444555555555555555544322 445555555555555555555555555555  2332 344555555555555


Q ss_pred             CHHHHHHHHHHH
Q 037695          667 KSEEADTLMLRF  678 (701)
Q Consensus       667 ~~~~A~~~~~~~  678 (701)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            555555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.50  E-value=0.00022  Score=65.85  Aligned_cols=223  Identities=11%  Similarity=-0.037  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          411 TYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKMDGAKKFMQECLNKGCAVNVVNFTSLI  486 (701)
Q Consensus       411 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  486 (701)
                      .+..|...+.+.+++.+|+..|++..+.|   +...+..|...|..    ..+...|...+......+   +......+.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            34444445555566666666666665554   33444444444544    445666666666665553   333333333


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695          487 RGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS----KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR  558 (701)
Q Consensus       487 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  558 (701)
                      ..+..    ..+.+.|...++.....|.   ......+...+.    .......+...+......   .+...+..+...
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence            33332    4566777777777766542   122222222222    234466667777666654   356666677777


Q ss_pred             HHh----cCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 037695          559 YCQ----VGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLN-  629 (701)
Q Consensus       559 ~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  629 (701)
                      +..    ..+...+..+++...+. .++.+...++..|..    ..++++|+.+|.++.+.+   ++..+..|+.+|.. 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~-g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G  227 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG  227 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred             hccCCCcccccccchhhhhccccc-cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcC
Confidence            765    45566777777777653 356666677777665    568999999999988865   56677788888775 


Q ss_pred             ---cCChhhHHHHHHHHHhCCCC
Q 037695          630 ---KGIPLLAYKVACRMFNRNLI  649 (701)
Q Consensus       630 ---~g~~~~A~~~~~~~~~~~~~  649 (701)
                         ..++++|++.|+++.+.|..
T Consensus       228 ~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         228 EGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCCccCHHHHHHHHHHHHHCcCH
Confidence               33788899999888886644

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.47  E-value=7.3e-07  Score=70.45  Aligned_cols=91  Identities=12%  Similarity=-0.061  Sum_probs=83.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          553 RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       553 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                      ..+...+.+.|++++|+..|++++...|. ..+|..++.++.+.|++++|+..++++++..+. +...|..++..|...|
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence            34667788999999999999999999998 889999999999999999999999999998744 7899999999999999


Q ss_pred             ChhhHHHHHHHHH
Q 037695          632 IPLLAYKVACRMF  644 (701)
Q Consensus       632 ~~~~A~~~~~~~~  644 (701)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999864

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.9e-06  Score=71.91  Aligned_cols=83  Identities=12%  Similarity=-0.059  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERL  662 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~  662 (701)
                      ++..++.+|.+.|++++|+..++++++..+. ++.++..++.+|...|++++|+..|+++++  +.| +..+...+..+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            4566778888888888888888888887643 778888888888888888888888888888  444 445555555554


Q ss_pred             HhcCCHH
Q 037695          663 ILEGKSE  669 (701)
Q Consensus       663 ~~~g~~~  669 (701)
                      .+.+...
T Consensus       141 ~~~~~~~  147 (170)
T d1p5qa1         141 QRIRRQL  147 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4433333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.3e-06  Score=73.43  Aligned_cols=75  Identities=12%  Similarity=-0.022  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          618 STCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      .+|..++.+|.+.|++++|+..++++++  +.| +...+..++.+|...|++++|+..|+++++.+|..+.....+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3567788999999999999999999999  455 56899999999999999999999999999999987777666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.33  E-value=5.6e-06  Score=69.47  Aligned_cols=124  Identities=10%  Similarity=0.033  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695          551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK  630 (701)
Q Consensus       551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  630 (701)
                      .+..-...+.+.|++.+|+..|.+++...+......            +........      .....++..++.+|.+.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~------------~~~~~~~~~------~~~~~~~~Nla~~~~~l   80 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD------------DQILLDKKK------NIEISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC------------CHHHHHHHH------HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh------------hHHHHHhhh------hHHHHHHhhHHHHHHHh
Confidence            344455666777777777777777765533210000            000000000      00123566677778888


Q ss_pred             CChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          631 GIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       631 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      |++++|+..++++++  +.| +..+|..++.+|...|++++|+..|+++++..|..+.....+..
T Consensus        81 ~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          81 KDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            888888888888887  344 45777778888888888888888888888888776666655544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.6e-06  Score=67.56  Aligned_cols=54  Identities=11%  Similarity=0.027  Sum_probs=22.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          556 IHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVL  609 (701)
Q Consensus       556 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  609 (701)
                      ...+.+.|++++|+..|.++++.+|. ..++..++.+|.+.|++++|+..+++++
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            33344444444444444444444433 3333344444444444444444444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.26  E-value=7e-06  Score=70.20  Aligned_cols=97  Identities=11%  Similarity=-0.073  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERL  662 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~  662 (701)
                      ++..++.+|.+.|++++|+..++++++..+ .+..+|..++.+|...|++++|+..|++++.  +.|+. .+...+..+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            456678888899999999999999988764 4788888889999999999999999999988  55554 5555555554


Q ss_pred             HhcCCH-HHHHHHHHHHHHcCC
Q 037695          663 ILEGKS-EEADTLMLRFVERGH  683 (701)
Q Consensus       663 ~~~g~~-~~A~~~~~~~~~~~~  683 (701)
                      ...+.. +...+.+.+|.++..
T Consensus       143 ~~~~~~~e~~kk~~~~~f~~~~  164 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMFKKFA  164 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhhhh
Confidence            444433 345566666665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.3e-06  Score=67.74  Aligned_cols=107  Identities=11%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--------HhhH
Q 037695          584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD--------LKLC  655 (701)
Q Consensus       584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~  655 (701)
                      .+..++..+...|++++|+..|.++++..+. +...+..++.+|...|++++|+..++++++  +.|+        ..+|
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence            3556888999999999999999999998754 889999999999999999999999999988  3332        1467


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          656 KKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      ..++..+...+++++|+++|++.+...+ .++....+..
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~  120 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ  120 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence            7788888999999999999999988764 4455555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7.3e-07  Score=91.63  Aligned_cols=135  Identities=10%  Similarity=-0.092  Sum_probs=77.2

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695          492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKL  571 (701)
Q Consensus       492 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  571 (701)
                      .+.++.|+..+....... .++...+..+...+.+.|+.++|...+.......   ...++..+...+...|++++|...
T Consensus        99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence            344555555444443321 2344556667777778888888887776655421   235677788888888889999999


Q ss_pred             HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695          572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG  631 (701)
Q Consensus       572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  631 (701)
                      |+++....|+ ..+|+.++..+...|+..+|+..|.+++... +|-+.++..|...+.+..
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence            9988888888 6788888888888899999998888888766 557788888877776544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.23  E-value=2.7e-06  Score=70.63  Aligned_cols=116  Identities=15%  Similarity=0.069  Sum_probs=79.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695          559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF----------GYLEEAGKILGKVLRTASKADASTCHVLVESY  627 (701)
Q Consensus       559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  627 (701)
                      |-+.+.+++|++.|+++++..|+ +.++..++.+|...          +.+++|+..|+++++..+. +..+|..++.+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence            34455677777777777777776 56666666666532          4457788888888877644 677777777777


Q ss_pred             HhcCC-----------hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          628 LNKGI-----------PLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       628 ~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                      ...|+           +++|.+.|+++++  +.|+...+...+..+      .+|.+++.++.++|.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            66543           5788889999988  777776665544333      467777777777663

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=1.7e-05  Score=67.80  Aligned_cols=76  Identities=5%  Similarity=-0.081  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER  661 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~  661 (701)
                      ..+..++.++.+.|++++|+..+.++++..+ .++.+|..++.+|...|++++|+..|+++++  +.|+ ..+...+..+
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~~~  154 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            3455566666677777777777777766553 3566666677777777777777777777776  3443 2444444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.16  E-value=2.6e-05  Score=65.27  Aligned_cols=119  Identities=11%  Similarity=-0.038  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695          515 VTYTTIIDALSKNGRVEEATELMMKMLSKG----LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIE  590 (701)
Q Consensus       515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~  590 (701)
                      ..+..-...+.+.|++.+|+..|.+.+..-    ..++.....                 ....+     ...++..++.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~~-----~~~~~~Nla~   75 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKNI-----EISCNLNLAT   75 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhhH-----HHHHHhhHHH
Confidence            345667788899999999999999988741    011111110                 00000     1235667788


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHH
Q 037695          591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKV  658 (701)
Q Consensus       591 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l  658 (701)
                      +|.+.|++++|+..++++++..+ .+..+|..++.+|...|++++|+..|+++++  +.|+. .+...+
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l  141 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSY  141 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred             HHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            88888888888888888888763 3778888888888888888888888888888  55543 444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.6e-07  Score=91.49  Aligned_cols=225  Identities=8%  Similarity=-0.002  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695          427 EACDVVREMVKKGFFPT-PVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV-VNFTSLIRGFCQKGDLEEALSLLDD  504 (701)
Q Consensus       427 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~  504 (701)
                      +|.+.|++..+.  .|+ ...+..+..++...+++++|   |++++..  .|+. ...+.... +. ...+..+.+.++.
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~-Lw-~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQD-LW-NHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHH-HH-HHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHH-HH-HHHHHHHHHHHHH
Confidence            567777777664  232 23455566666667777665   5555543  1111 11111111 11 1123456666666


Q ss_pred             HHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 037695          505 MYLCKKDPDTVTYTTIIDA--LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR  582 (701)
Q Consensus       505 ~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  582 (701)
                      ..+....++..-....+..  +...+.++.|+..+....+.. +++...+..+...+.+.|+.++|...+.......| .
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~  152 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-Q  152 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH-H
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-H
Confidence            6554333333222221111  223444555555544443322 33455666777777788888888877777665433 3


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSER  661 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~  661 (701)
                      .++..++..+...|++++|...|.++++..+. +...|+.|+..|...|+..+|+..|.+++.  +.| -..++..+...
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~  229 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHH
Confidence            46667788888888888888888888887643 667888888888888888888888888877  433 44666777666


Q ss_pred             HHhc
Q 037695          662 LILE  665 (701)
Q Consensus       662 ~~~~  665 (701)
                      +.+.
T Consensus       230 ~~~~  233 (497)
T d1ya0a1         230 LSKA  233 (497)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.10  E-value=0.003  Score=59.29  Aligned_cols=49  Identities=8%  Similarity=-0.045  Sum_probs=22.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 037695          373 NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE  422 (701)
Q Consensus       373 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  422 (701)
                      ++.....++..|-..|.++....++...... -..+...++.++..|++.
T Consensus        98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          98 HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            3333444555555555555555555544322 123344444455544443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.09  E-value=0.0043  Score=58.16  Aligned_cols=130  Identities=12%  Similarity=0.005  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 037695          109 RQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSR  188 (701)
Q Consensus       109 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  188 (701)
                      ..+...+...|.++.|..+|..+.          -|..++..+.+.++++.|.+++...      -++.+|..+..++.+
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~   81 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD   81 (336)
T ss_dssp             -----------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHh
Confidence            345555666688888888887322          3777888888888888887776533      367788888888887


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 037695          189 AGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLH  260 (701)
Q Consensus       189 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  260 (701)
                      ......|.     +.......++.....++..|-..|.++....+++..... -.++...++.++..|++.+
T Consensus        82 ~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          82 GKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             TTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            76654432     222233445556667778888888888888888776533 2455667777777777754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.07  E-value=2.8e-05  Score=66.27  Aligned_cols=76  Identities=13%  Similarity=0.017  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695          618 STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR  694 (701)
Q Consensus       618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  694 (701)
                      .+|..++.+|.+.|++.+|+..++++++.++. +...+..++.+|...|++++|+..|+++++..|..+.....+..
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45667888999999999999999999994433 56889999999999999999999999999999877766555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.05  E-value=3e-05  Score=66.16  Aligned_cols=80  Identities=10%  Similarity=-0.014  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695          548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES  626 (701)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  626 (701)
                      ....|..+..++.+.|++++|+..++++++.+|. ..+|..++.+|...|++++|+..|+++++..+. +..+...+..+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~  154 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3456777888899999999999999999999888 788999999999999999999999999998644 66666666554


Q ss_pred             HH
Q 037695          627 YL  628 (701)
Q Consensus       627 ~~  628 (701)
                      ..
T Consensus       155 ~~  156 (169)
T d1ihga1         155 KQ  156 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.91  E-value=1e-05  Score=74.33  Aligned_cols=126  Identities=15%  Similarity=0.040  Sum_probs=77.3

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695          560 CQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK  638 (701)
Q Consensus       560 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  638 (701)
                      .+.|++++|+..+++.++.+|. ...+..++..|+..|++++|...++.+++..+. +...+..+...+...+...++..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHHH
Confidence            4567777777777777777777 567777777777778888887777777776533 44455455554444333332222


Q ss_pred             HHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695          639 VACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK  687 (701)
Q Consensus       639 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (701)
                      ........ ..|+ ...+...+..+...|+.++|.+.++++.+..+..+.
T Consensus        86 ~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          86 GAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             SCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             Hhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            11111110 1122 233444556677788888888888888888776554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=0.00021  Score=60.97  Aligned_cols=73  Identities=14%  Similarity=-0.020  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhhHH
Q 037695          583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-----RNLIPDLKLCK  656 (701)
Q Consensus       583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  656 (701)
                      .++..++..+...|++++|+..++++++..+ .+...|..++.+|...|+..+|+..|+++.+     .|+.|...+-.
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~  145 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  145 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            4566778888888888888888888888764 4778888888888888888888888887744     47777765433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=9.2e-05  Score=60.96  Aligned_cols=113  Identities=8%  Similarity=0.003  Sum_probs=71.5

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh
Q 037695          526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ----------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS  594 (701)
Q Consensus       526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~  594 (701)
                      +.+.+++|...|+..++.. |.++.++..+..+|..          .+.+++|+..|+++++.+|. ..+|..++.+|..
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            3444566666666665543 4445555555555543          24457788888888888887 6778888888766


Q ss_pred             cC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695          595 FG-----------YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN  647 (701)
Q Consensus       595 ~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  647 (701)
                      .|           ++++|...|+++++..+. +...+..|..       ...|.+.+.++.+.|
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~-------~~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEM-------TAKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH-------HHTHHHHHHHHHHSS
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence            54           368899999999887533 4443333332       246667777666654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.78  E-value=1.9e-05  Score=72.44  Aligned_cols=121  Identities=10%  Similarity=0.024  Sum_probs=83.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695          524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG  602 (701)
Q Consensus       524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  602 (701)
                      ..+.|++++|+..+++.++.. |-+...+..++..++..|++++|.+.++.+.+..|. ...+..+...+...+..+++.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            346788999999999988875 667888888999999999999999999999888887 455555555554444444333


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                      .........+.+++...+...+..+...|+.++|...++++.+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            2222111112122233444456678888999999999988887

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.8e-05  Score=56.14  Aligned_cols=81  Identities=11%  Similarity=0.032  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhC---C--CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695          617 ASTCHVLVESYLNKGIPLLAYKVACRMFNR---N--LIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE  690 (701)
Q Consensus       617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  690 (701)
                      ...+..++..+.+.|++.+|+..++++++.   +  ..++ ..++..++.++.+.|++++|+..++++++..|..+....
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            344456666777777777777777766652   1  1122 356777777888888888888888888888777777666


Q ss_pred             HHhhhhh
Q 037695          691 HLQRQRV  697 (701)
Q Consensus       691 ~l~~~~~  697 (701)
                      ++.-.+.
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.70  E-value=0.00013  Score=61.14  Aligned_cols=95  Identities=18%  Similarity=0.048  Sum_probs=63.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCCCC-
Q 037695          589 IENLCSFGYLEEAGKILGKVLRTASK-A----------DASTCHVLVESYLNKGIPLLAYKVACRMFNR-----NLIPD-  651 (701)
Q Consensus       589 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-  651 (701)
                      +..+...|++++|+..|+++++.... |          ...+|+.++.+|...|++++|+..++++++.     ...++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            33444556666666666666554221 1          1356777788888888888888888777651     12222 


Q ss_pred             ----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695          652 ----LKLCKKVSERLILEGKSEEADTLMLRFVERGH  683 (701)
Q Consensus       652 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  683 (701)
                          ...+..++.+|...|++++|+..|+++++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                23567789999999999999999999887644

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.59  E-value=0.00099  Score=55.38  Aligned_cols=89  Identities=13%  Similarity=0.040  Sum_probs=50.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC--
Q 037695          557 HRYCQVGRVEDLLKLLEKMLSKQKC-------------RTAYNQVIENLCSFGYLEEAGKILGKVLRTA-----SKAD--  616 (701)
Q Consensus       557 ~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~--  616 (701)
                      ..+...|++++|++.|++.++..|.             ...|+.++.+|...|++++|...++++++..     ..++  
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~   96 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   96 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence            3344556666666666665544322             1245556666666666666666666665421     1111  


Q ss_pred             ---HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695          617 ---ASTCHVLVESYLNKGIPLLAYKVACRMFN  645 (701)
Q Consensus       617 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  645 (701)
                         ...++.++.+|...|++++|+..|+++++
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               12455666777777777777777777665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=0.0013  Score=55.98  Aligned_cols=121  Identities=13%  Similarity=0.089  Sum_probs=84.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695          486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRV  565 (701)
Q Consensus       486 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  565 (701)
                      .......|++++|...|.+.....  +....     ..+ ..+.+  +...-..+...    ....+..++.++...|++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-----~~~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g~~   83 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREW--RGPVL-----DDL-RDFQF--VEPFATALVED----KVLAHTAKAEAEIACGRA   83 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-----GGG-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--ccccc-----ccC-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCCCc
Confidence            356677888888888888887632  21100     000 00111  11111111111    234577788999999999


Q ss_pred             HHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 037695          566 EDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR-----TASKADASTC  620 (701)
Q Consensus       566 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~  620 (701)
                      ++|+..+++++..+|. ...|..++.+|...|+..+|++.|+++.+     .|..|.+.+-
T Consensus        84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            9999999999999998 78999999999999999999999998743     5788887653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00096  Score=49.83  Aligned_cols=61  Identities=11%  Similarity=-0.018  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--------RTAYNQVIENLCSFGYLEEAGKILGKVLRTA  612 (701)
Q Consensus       552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  612 (701)
                      +..+...+.+.|++++|+..|+++++..|.        ..++..++.++.+.|++++|+..++++++..
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            334445555555555555555554433111        2334444555555555555555555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.79  E-value=0.022  Score=45.26  Aligned_cols=82  Identities=16%  Similarity=0.077  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCC
Q 037695          596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL----EGK  667 (701)
Q Consensus       596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~  667 (701)
                      .+.++|..+++++.+.+   ++..+..|...|..    ..+..+|+++|++..+.+   +......++..|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            45666666666666543   45555556655554    335667777777777643   34455566666665    457


Q ss_pred             HHHHHHHHHHHHHcCC
Q 037695          668 SEEADTLMLRFVERGH  683 (701)
Q Consensus       668 ~~~A~~~~~~~~~~~~  683 (701)
                      .++|..+|+++.+.|.
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            7788888888777763

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.26  E-value=0.054  Score=42.80  Aligned_cols=81  Identities=14%  Similarity=0.016  Sum_probs=42.6

Q ss_pred             CCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChh
Q 037695          563 GRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPL  634 (701)
Q Consensus       563 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  634 (701)
                      .+.++|++++++..+.+ ++.+...|+..|..    ..+.++|..+|+++.+.+   ++.....|+..|..    ..+..
T Consensus        37 ~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHH
Confidence            44555666665555432 34444445544442    345666666666665543   44445555555544    23556


Q ss_pred             hHHHHHHHHHhCC
Q 037695          635 LAYKVACRMFNRN  647 (701)
Q Consensus       635 ~A~~~~~~~~~~~  647 (701)
                      +|+.+++++.+.|
T Consensus       113 ~A~~~~~~Aa~~G  125 (133)
T d1klxa_         113 QAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
Confidence            6666666665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.058  Score=41.18  Aligned_cols=69  Identities=9%  Similarity=-0.025  Sum_probs=31.1

Q ss_pred             CCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695          615 ADASTCHVLVESYLNKGI---PLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHI  684 (701)
Q Consensus       615 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  684 (701)
                      +...+-..+++++.+..+   .++|+.+++.+.+.+.. + ...+..++-+|.+.|++++|..+++++++..|.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            334444444444444432   23455555555442111 1 134444455555555555555555555555543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.049  Score=41.61  Aligned_cols=70  Identities=13%  Similarity=-0.029  Sum_probs=42.3

Q ss_pred             ChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695          581 CRTAYNQVIENLCSFG---YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL  652 (701)
Q Consensus       581 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  652 (701)
                      ...+-..+++++.+..   +.++|+.+++++.+.++.-....+..|+-+|.+.|++++|..+++++++  +.|+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n  106 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN  106 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence            3455556666666543   3456677777766544221234556666677777777777777777777  55554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.94  E-value=0.5  Score=35.47  Aligned_cols=137  Identities=13%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--hHHHHHHHHHHhcCCHHHHH
Q 037695          525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR--TAYNQVIENLCSFGYLEEAG  602 (701)
Q Consensus       525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~  602 (701)
                      .-.|.+++..++..+....   .+..-|+.++--....-+-+-..+.++.+-+...-.  .....++.++...+.     
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~-----   84 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT-----   84 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC-----
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcc-----
Confidence            3456666666666666553   234445555544444445555555555544332100  112233333333322     


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695          603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG  682 (701)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (701)
                                   +.......+..+.++|.-+.-.+++..+.+ +-.|++...-.++.+|-+.|...++.+++.++-++|
T Consensus        85 -------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          85 -------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             -------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence                         222333344555666666666666666555 445566677777777777777777777777777766


Q ss_pred             C
Q 037695          683 H  683 (701)
Q Consensus       683 ~  683 (701)
                      .
T Consensus       151 ~  151 (161)
T d1wy6a1         151 E  151 (161)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.14  E-value=1.2  Score=33.33  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695          516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK  578 (701)
Q Consensus       516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  578 (701)
                      .+...++.+.+.|+-+.-.++++.+.+.+ .|++.....+..+|.+.|...++-+++.++-++
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            34444455555555555555555544433 455555555555555555555555555555543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=5.3  Score=38.32  Aligned_cols=375  Identities=10%  Similarity=0.001  Sum_probs=192.8

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 037695          120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVL  199 (701)
Q Consensus       120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  199 (701)
                      .......|..   +.++.|.....-..-+..+++.+++......+     ...+.+...-.....+....|+...|...+
T Consensus        54 ~~~~i~~Fl~---~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~-----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~  125 (450)
T d1qsaa1          54 PAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDWRGLLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGA  125 (450)
T ss_dssp             CHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhccCHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            3444444433   33333333333445566777777776644433     123456666667777777888888887777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCC
Q 037695          200 SMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSP  279 (701)
Q Consensus       200 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  279 (701)
                      ..+-..| ...+                +.+-.+|..+...| .++...+-.-+......|++..|..++..+...    
T Consensus       126 ~~lW~~~-~~~p----------------~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----  183 (450)
T d1qsaa1         126 KELWLTG-KSQP----------------NACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----  183 (450)
T ss_dssp             HHHHSCS-SCCC----------------THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----
T ss_pred             HHHHhcC-CCCc----------------hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----
Confidence            7665444 2222                22333444444443 233333334445556667777777776655321    


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cCCHHH
Q 037695          280 DKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCR--VGELDQ  357 (701)
Q Consensus       280 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~  357 (701)
                      ........+....+.   ..+....                          ..  ..++......+..++.+  ..+.+.
T Consensus       184 ~~~~~~a~~~l~~~p---~~~~~~~--------------------------~~--~~~~~~~~~~~~~~l~rla~~d~~~  232 (450)
T d1qsaa1         184 YQTIASAIISLANNP---NTVLTFA--------------------------RT--TGATDFTRQMAAVAFASVARQDAEN  232 (450)
T ss_dssp             GHHHHHHHHHHHHCG---GGHHHHH--------------------------HH--SCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHhCh---HhHHHHH--------------------------hc--CCCChhhhHHHHHHHHHHhccChhH
Confidence            222223333222111   1111110                          01  11222222222222222  246677


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037695          358 AKKMLQQMYHHGCKPNTVSYTA----FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVR  433 (701)
Q Consensus       358 a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  433 (701)
                      +..++........ .+..-+..    +...+...+..+.+..++......+  .+.....-.+......+++..+...+.
T Consensus       233 a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~  309 (450)
T d1qsaa1         233 ARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLA  309 (450)
T ss_dssp             HHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHH
Confidence            7777777665321 22222222    2222234456677777776666543  333333344555566778888888777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C
Q 037695          434 EMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK--D  511 (701)
Q Consensus       434 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~  511 (701)
                      .|.... .......--+..++...|+.+.|...|..+...   ++   |-.++.+- +.|..-.       +....+  .
T Consensus       310 ~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~  374 (450)
T d1qsaa1         310 RLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKIDKAPQN  374 (450)
T ss_dssp             HSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCCCCCSC
T ss_pred             hcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcCCCCcc
Confidence            664321 223344455667778888888888888877642   22   32222221 1121000       000000  0


Q ss_pred             CCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695          512 PDT-VT---YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML  576 (701)
Q Consensus       512 p~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  576 (701)
                      +.. ..   -...+..+...|....|...+..+...   .+......+.....+.|.++.|+....++.
T Consensus       375 ~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            010 00   112355677889999999998888754   245566777888889999999988776664

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.15  E-value=3.2  Score=29.38  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChhHHHHHHH
Q 037695          529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-KCRTAYNQVIE  590 (701)
Q Consensus       529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~  590 (701)
                      +.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+....+- +....|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            455677777888888888999999999999999999999999998887664 34556665544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.50  E-value=2.3  Score=30.06  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695          427 EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI  486 (701)
Q Consensus       427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  486 (701)
                      ++..-++.+....+.|.+....+.+++|-+.+++..|.++++.++.+ +.++...|..++
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil   82 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence            44444555555566777777777777777777777777777766554 222333444443