Citrus Sinensis ID: 037696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIMSSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQQQKQQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNATPPPQQPPSQPMNTDTIVCMDKDQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEEccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maqlppkipnmshnwssfpyqRMSFIssnnnnnndnnnnniANAATTMtlnnnnnihhnqphwvdefldfssvrrgahrrsisdsvafldppsslvVVEECrnsnnsnnnnnnstmnnimsssdanycfdrlddeQLMSMFsddisvsvpptasssnpstpsdqnsnndekvtapsdqQQQQKQQqqqpknepgevesscknnepsssqttthqtppasngdtiidpkRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSalsprvafldhQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKmknnnnsnnnatpppqqppsqpmntdtivcmdkdq
Flexible Loop (DISEMBL)
maqlppkipnmshnWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQPHWVDEFLDFSSVRRGAHRrsisdsvafldppSSLVVVEECRNsnnsnnnnnnstMNNIMSSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQQQKQQQQQPKNEPGEVESSCKNNEPSssqttthqtppasngdtiidpkRVKRILanrqsaqrsrvrklqyisELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNatpppqqppsqpmntDTIVCMDKDQ
Low Complexity Region (SEG)
MAQLPPKIPNMSHNWSSFPYQRMSFISSnnnnnndnnnnnianaattmtlnnnnnIHHNQPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRnsnnsnnnnnnstmnnimsssDANYCFDRLDDEQLMSMFSDDIsvsvpptasssnpstpsdqnsnndEKVTAPSDqqqqqkqqqqqPKNEPGEVESSCKNNEpsssqttthqtppasNGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHqqnikkmknnnnsnnnatpppqqppsqpmntDTIVCMDKDQ
Disordered region (IsUnstruct)
**************************************************************WVDEFLDFSS******************************************************YCF**********************************************************************************************************************LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQ*AL*****************************************************
Disordered Region (DISOPRED)
*AQLPPKIPNMSHNWS************************************************************************************************************************************************************************************************************************************VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALK******************ALKKEIE************************************************
Disordered Region (DISEMBL)
MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIMSSSDANYCFDRLDDEQLMSMFSDDIS*************************************************************************NGDTIIDPKRVKRILAN*********RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNN*************MNTDTIVCMDKDQ
Disordered Region (DISPRO)
***LPPKIPNMSHNWSSFPYQR*************************************QPHWVDEFLDFSSVR******SISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIMSSSDANYCFDRLDDEQLMSMFS*******************************************************************************DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIMSSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQQQKQQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHxxxxxxxxxxxxxxxxxxxxxKMKNNNNSNNNATPPPQQPPSQPMNTDTIVCMDKDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9MA75	341	Transcription factor VIP1	no	no	0.476	0.507	0.381	7e-20
Q6S4P4	329	Transcription factor RF2b	no	no	0.258	0.285	0.521	3e-19
Q69IL4	380	Transcription factor RF2a	no	no	0.278	0.265	0.475	8e-19
Q04088	398	Probable transcription fa	no	no	0.275	0.251	0.49	7e-18
Q54Y73	834	Probable basic-leucine zi	no	no	0.165	0.071	0.383	0.0006

>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 95/186 (51%), Gaps = 13/186 (6%)

Query: 169 DEKVTAPSDQQQQQKQQQQQPKNE-PGEVESSCKNNE---PSSSQTTTHQTPPASNGD-- 222
           +EK  A S  ++++        N   GE+ S+  N E    S S   + +      GD  
Sbjct: 128 EEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILASVSGKDSGKKNMGMGGDRL 187

Query: 223 ---TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279
               ++DPKR KRILANRQSA RS+ RK++Y  ELER V TLQ E + LS +V  L    
Sbjct: 188 AELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGT 247

Query: 280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNA 339
             LN +N  LK R+ AL Q    +DA  EAL+ E+ RL+ V  +      + N NS N A
Sbjct: 248 SELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVAGEIP----QGNGNSYNRA 303

Query: 340 TPPPQQ 345
               QQ
Sbjct: 304 QFSSQQ 309

Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 65/94 (69%)

Query: 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNV 284
           IDPKR KRILANRQSA RS+ RK +YI+ELER V TLQTE + LS ++         L+ 
Sbjct: 131 IDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSA 190

Query: 285 DNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318
           +N+ LK R+ A+ Q    +DA  +ALK+E+ERL+
Sbjct: 191 ENAELKIRLQAMEQQAQLRDALNDALKQELERLK 224

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query: 223 TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLIL 282
            ++DPKR KRI ANRQSA RS+ RK++YI+ELER V TLQTE + LS ++A L      L
Sbjct: 178 ALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGL 237

Query: 283 NVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323
             +NS LK R+  + Q    +DA  + LK E++RL+    Q
Sbjct: 238 TTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQ 278

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 64/100 (64%)

Query: 224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283
           +IDPKR KRI ANRQSA RS+ RK +YI ELER V TLQTE + LS ++  L      L 
Sbjct: 199 LIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLT 258

Query: 284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323
           V+N+ LK R+  + Q    +D   EALK+EI+ L+ +  Q
Sbjct: 259 VENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQ 298

Putative transcription factor with an activatory role.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54Y73|BZPD_DICDI Probable basic-leucine zipper transcription factor D OS=Dictyostelium discoideum GN=bzpD PE=3 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%)

Query: 216 PPASNGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           PP  N +   + K+ +R++ NR+SAQ SR+RK  YI +LE++++ L  + S+L   V +L
Sbjct: 381 PPTHNQEDERNVKKQRRLIKNRESAQLSRMRKKIYIEDLEKTISDLTQDNSSLKEEVLYL 440

Probable transcriptional regulator.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
359493805	319	PREDICTED: uncharacterized protein LOC10	0.809	0.921	0.633	1e-102
302142931	309	unnamed protein product [Vitis vinifera]	0.782	0.919	0.625	4e-96
449453539	326	PREDICTED: uncharacterized protein LOC10	0.840	0.935	0.580	1e-94
147768650	294	hypothetical protein VITISV_011991 [Viti	0.749	0.925	0.684	1e-94
224056541	331	predicted protein [Populus trichocarpa]	0.873	0.957	0.620	5e-94
255568343	325	Transcription factor RF2a, putative [Ric	0.837	0.935	0.583	2e-90
225446525	295	PREDICTED: uncharacterized protein LOC10	0.757	0.932	0.566	5e-88
358343352	344	Transcription factor bZIP48 [Medicago tr	0.837	0.883	0.571	3e-85
297820612	329	bZIP transcription factor family protein	0.782	0.863	0.533	9e-85
359806839	320	transcription factor bZIP58 [Glycine max	0.801	0.909	0.564	1e-84

>gi|359493805|ref|XP_002285311.2| PREDICTED: uncharacterized protein LOC100258873 [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/344 (63%), Positives = 244/344 (70%), Gaps = 50/344 (14%)

Query: 1   MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQ 60
           MAQLPPK+PNM+ NW SFP+QRM  +++                                
Sbjct: 1   MAQLPPKVPNMTQNWPSFPHQRMPSMAAPALLPAATATTT-----------------SQH 43

Query: 61  PHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIM 120
           P WVDEFLDFSS RRG+HRRS+SDS+AFL+ P   V+VEE R+S+ +  +  N       
Sbjct: 44  PSWVDEFLDFSSSRRGSHRRSVSDSIAFLEAP---VLVEEARHSHATMLHGANG------ 94

Query: 121 SSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQ 180
                   FDRLDD+QLMSMFSDDIS++VPPT SSS PSTPSDQNSNNDEK       ++
Sbjct: 95  --------FDRLDDDQLMSMFSDDISLTVPPTVSSSGPSTPSDQNSNNDEK-----GDEK 141

Query: 181 QQKQQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRILANRQSA 240
                QQ PKNEPGEVESSCK   PS   +T      ASNGD+IIDPKRVKRILANRQSA
Sbjct: 142 GAALDQQPPKNEPGEVESSCKTELPSFRPST------ASNGDSIIDPKRVKRILANRQSA 195

Query: 241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300
           QRSRVRKLQYISELERSVT+LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK
Sbjct: 196 QRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 255

Query: 301 IFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNATPPPQ 344
           IFKDAHQEALKKEIERLRQVYHQQ++KKM N+         PPQ
Sbjct: 256 IFKDAHQEALKKEIERLRQVYHQQSLKKMGNSATGA-----PPQ 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142931|emb|CBI20226.3| unnamed protein product [Vitis vinifera]

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 209/334 (62%), Positives = 234/334 (70%), Gaps = 50/334 (14%)

Query: 11  MSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQPHWVDEFLDF 70
           M+ NW SFP+QRM  +++                                P WVDEFLDF
Sbjct: 1   MTQNWPSFPHQRMPSMAAPALLPAATATTT-----------------SQHPSWVDEFLDF 43

Query: 71  SSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIMSSSDANYCFD 130
           SS RRG+HRRS+SDS+AFL+ P   V+VEE R+S+ +  +  N               FD
Sbjct: 44  SSSRRGSHRRSVSDSIAFLEAP---VLVEEARHSHATMLHGANG--------------FD 86

Query: 131 RLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQQQKQQQQQPK 190
           RLDD+QLMSMFSDDIS++VPPT SSS PSTPSDQNSNNDEK       ++     QQ PK
Sbjct: 87  RLDDDQLMSMFSDDISLTVPPTVSSSGPSTPSDQNSNNDEK-----GDEKGAALDQQPPK 141

Query: 191 NEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRILANRQSAQRSRVRKLQY 250
           NEPGEVESSCK   PS   +T      ASNGD+IIDPKRVKRILANRQSAQRSRVRKLQY
Sbjct: 142 NEPGEVESSCKTELPSFRPST------ASNGDSIIDPKRVKRILANRQSAQRSRVRKLQY 195

Query: 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL 310
           ISELERSVT+LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL
Sbjct: 196 ISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL 255

Query: 311 KKEIERLRQVYHQQNIKKMKNNNNSNNNATPPPQ 344
           KKEIERLRQVYHQQ++KKM N+         PPQ
Sbjct: 256 KKEIERLRQVYHQQSLKKMGNSATGA-----PPQ 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453539|ref|XP_004144514.1| PREDICTED: uncharacterized protein LOC101205276 [Cucumis sativus] gi|449517287|ref|XP_004165677.1| PREDICTED: uncharacterized protein LOC101231108 [Cucumis sativus]

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 236/353 (66%), Gaps = 48/353 (13%)

Query: 1   MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQ 60
           MAQLPPKIPNM+ NWS    Q+                  I +  T         +    
Sbjct: 1   MAQLPPKIPNMASNWSELSRQK------------------IPSMETFAPTTTTPPVTQQN 42

Query: 61  PHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIM 120
           P WVDEFLDFSSVRRG+HRRS+SDS+ FL+ P   ++ ++CR S      +         
Sbjct: 43  PSWVDEFLDFSSVRRGSHRRSVSDSITFLEMP---MLEDDCRASAAPPPPST-------- 91

Query: 121 SSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQ 180
           ++ D N  FDR DDEQ +SMF+D+IS +V PT SSSNPSTPSD NS NDEK     D Q 
Sbjct: 92  ATGDQNE-FDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEK-----DAQN 145

Query: 181 QQKQQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRILANRQSA 240
             K  Q   KNEP EV+S     + S +QT ++ T  A + D I DPKRVKRILANRQSA
Sbjct: 146 DGKVNQN--KNEPDEVQS----QQQSENQTQSNSTATAGSTDRITDPKRVKRILANRQSA 199

Query: 241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300
           QRSRVRKLQYISELERSVT+LQ EVS LSPRVAFLDHQRL+LNVDNSALKQRIAALAQDK
Sbjct: 200 QRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDK 259

Query: 301 IFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNATPPPQQPPSQPMNT 353
           IFKDAHQEALK+EIERLRQVYHQQNIKKM+       NA+P P   PSQP+ T
Sbjct: 260 IFKDAHQEALKREIERLRQVYHQQNIKKME-------NASPSPAITPSQPVAT 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768650|emb|CAN71664.1| hypothetical protein VITISV_011991 [Vitis vinifera]

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 208/304 (68%), Positives = 228/304 (75%), Gaps = 32/304 (10%)

Query: 61  PHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIM 120
           P WVDEFLDFSS RRG+HRRS+SDS+AFL+ P   V+VEE R+S+ +  +  N       
Sbjct: 19  PSWVDEFLDFSSSRRGSHRRSVSDSIAFLEAP---VLVEEARHSHATMLHGANG------ 69

Query: 121 SSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQ 180
                   FDRLDD+QLMSMFSDDIS++VPPT SSS PSTPSDQNSNNDEK       ++
Sbjct: 70  --------FDRLDDDQLMSMFSDDISLTVPPTVSSSGPSTPSDQNSNNDEK-----GDEK 116

Query: 181 QQKQQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRILANRQSA 240
                QQ PKNEPGEVESSCK   PS   +T      ASNGD+IIDPKRVKRILANRQSA
Sbjct: 117 GAALDQQPPKNEPGEVESSCKTELPSFRPST------ASNGDSIIDPKRVKRILANRQSA 170

Query: 241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300
           QRSRVRKLQYISELERSVT+LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK
Sbjct: 171 QRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 230

Query: 301 IFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNATPPPQQPPSQPMNTDTIV-CM 359
           IFKDAHQEALKKEIERLRQVYHQQ++KKM    NS   A P     P Q   TD  + C 
Sbjct: 231 IFKDAHQEALKKEIERLRQVYHQQSLKKM---GNSATGAPPQSTTQPHQTTTTDAAMGCT 287

Query: 360 DKDQ 363
           DK Q
Sbjct: 288 DKLQ 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056541|ref|XP_002298901.1| predicted protein [Populus trichocarpa] gi|222846159|gb|EEE83706.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 229/369 (62%), Positives = 265/369 (71%), Gaps = 52/369 (14%)

Query: 1   MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQ 60
           MAQLPPKIP ++ NW SF +Q MS              N  +NAA TM         ++Q
Sbjct: 1   MAQLPPKIPAVTQNWPSFSHQTMS--------------NYFSNAAATME--------NHQ 38

Query: 61  PHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVE-ECRNSNNSNNNNNNSTMNNI 119
           P WVDEFLDF+S RRG+HRRSISD + F++  +   +VE +C ++NNS++ NNN + +N 
Sbjct: 39  PCWVDEFLDFTSTRRGSHRRSISDCITFIETTNMPSLVEDQCHDNNNSSSCNNNHSSSNA 98

Query: 120 MSSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQ 179
           + S  AN  FD+LDD+QLMSMFS D+S+S+    SSSNPSTPSDQNS NDEK + P+DQ 
Sbjct: 99  LIS--ANLGFDKLDDDQLMSMFSHDMSLSL--PPSSSNPSTPSDQNSKNDEKPSKPTDQH 154

Query: 180 QQQKQ---QQQQP---KNEPGEVESSCKNNEPSSSQTTTHQTP-PAS--NGDTIIDPKRV 230
             Q++   +QQQ    K EPGEVESSCK  EP       HQ P P S  NGDTI DPKRV
Sbjct: 155 HHQEEGNTEQQQAAVAKTEPGEVESSCKQ-EP-------HQPPLPTSSNNGDTINDPKRV 206

Query: 231 K-RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSAL 289
           K RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSAL
Sbjct: 207 KSRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSAL 266

Query: 290 KQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNATPPPQQPPSQ 349
           KQRIAALAQDKIFKDAHQEALKKEIERLRQVYH QN+KKM   N+S + A    +Q P  
Sbjct: 267 KQRIAALAQDKIFKDAHQEALKKEIERLRQVYHHQNLKKM---NSSGHAAEAAREQSP-- 321

Query: 350 PMNTDTIVC 358
             N + I C
Sbjct: 322 --NHEAIQC 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568343|ref|XP_002525146.1| Transcription factor RF2a, putative [Ricinus communis] gi|223535605|gb|EEF37273.1| Transcription factor RF2a, putative [Ricinus communis]

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/346 (58%), Positives = 237/346 (68%), Gaps = 42/346 (12%)

Query: 1   MAQLPPKIPNMSHNWSSFPYQR----MSFISSNNNNNNDNNNNNIANAATTMTLNNNNNI 56
           MAQLPPKIPNM   W  F + +    M  I+ +NNN   +     A              
Sbjct: 1   MAQLPPKIPNMQPTWPEFSHHQKLPSMGIIAPSNNNAAASTAAAAATTT----------- 49

Query: 57  HHNQPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTM 116
               P WVDEFLDFSS RRG HRRS+SDS+AFL+ P    ++EECR     ++++++   
Sbjct: 50  --QNPSWVDEFLDFSSARRGTHRRSVSDSIAFLEAP----LIEECRAIGAPHHHHHHHHG 103

Query: 117 NNIMSSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPS 176
           +   SSSD    FD+ DDEQ MSMF+DDIS +V P  S SNPSTPSD NS NDEK    S
Sbjct: 104 SGHNSSSD----FDKFDDEQFMSMFNDDISNAVAP--SCSNPSTPSDHNSFNDEKEPTLS 157

Query: 177 DQQQQQKQQQQQPKNEPGEVESSCKNNE--PSSSQTTTHQTPPASNGDTIIDPKRVKRIL 234
           DQ+QQ+       +NE  EV+S C+ +   PS++  TT       + D IIDPKRVKRIL
Sbjct: 158 DQKQQKI------RNESDEVQSQCQTDTQNPSNATNTT-------SSDRIIDPKRVKRIL 204

Query: 235 ANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294
           ANRQSAQRSRVRKLQYISELERSVT+LQ EVS LSPRVAFLDHQRL+LNVDNSALKQRIA
Sbjct: 205 ANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIA 264

Query: 295 ALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNAT 340
           ALAQDKIFKDAHQEALK+EIERLRQVYHQQN+K M+N   S + AT
Sbjct: 265 ALAQDKIFKDAHQEALKREIERLRQVYHQQNLKNMENATASPSPAT 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446525|ref|XP_002275912.1| PREDICTED: uncharacterized protein LOC100243740 [Vitis vinifera] gi|302143381|emb|CBI21942.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 196/346 (56%), Positives = 227/346 (65%), Gaps = 71/346 (20%)

Query: 1   MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQ 60
           MAQLPPK+P M+ NW SFP+Q++  +             N+A  AT              
Sbjct: 1   MAQLPPKVPAMAANWPSFPHQKIPSM------------GNLAPPAT------------QN 36

Query: 61  PHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIM 120
           P WVDEFLDFSS +RG HRRS+SDS+AF + P      ++CRNS  +             
Sbjct: 37  PSWVDEFLDFSSAKRGTHRRSVSDSIAFFEAP------DDCRNSGAAPR----------- 79

Query: 121 SSSDANYCFDRLDDEQLMSMFSDDISVSVPPTASSSNPSTPSDQNSNNDEKVTAPSDQQQ 180
               A   FD+ DDEQ MSMF+D ++    PT SSSNPSTPSD  S N+EK T       
Sbjct: 80  -PPGAGNEFDQFDDEQFMSMFTDAMA----PTISSSNPSTPSDHYSFNEEKTTT-----I 129

Query: 181 QQKQQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTPP----ASNGDTIIDPKRVKRILAN 236
           +Q+QQQQQ KNE  EV+SSCK            QTPP     ++ D I+DPKRVKRILAN
Sbjct: 130 EQQQQQQQLKNESEEVQSSCK---------LESQTPPQPSMTTSNDRIVDPKRVKRILAN 180

Query: 237 RQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296
           RQSAQRSRVRKLQYISELERSVT+LQTEVS LSPRVAFLDHQRL+LNVDNSALKQRIAAL
Sbjct: 181 RQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL 240

Query: 297 AQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNATPP 342
           AQDKIFKDAHQ+ALK+EIERLRQVYHQQN+K       +  NA PP
Sbjct: 241 AQDKIFKDAHQDALKREIERLRQVYHQQNLK-------TTENAAPP 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343352|ref|XP_003635768.1| Transcription factor bZIP48 [Medicago truncatula] gi|355501703|gb|AES82906.1| Transcription factor bZIP48 [Medicago truncatula]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 201/352 (57%), Positives = 238/352 (67%), Gaps = 48/352 (13%)

Query: 1   MAQLPPKIPNMSHNWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQ 60
           MAQLPPKIPNMS +W  F  Q+ + + ++ + NN           TT      NN  +  
Sbjct: 1   MAQLPPKIPNMSPSWPDFSTQQKNIMPTSISTNN---------IVTT------NNYQNQN 45

Query: 61  PHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIM 120
           P WVDEFLDFSS RRGAHRRS+SDSV FL+ P          +  +  NNN+N       
Sbjct: 46  PSWVDEFLDFSSARRGAHRRSVSDSVTFLETP--------MLDGKHDGNNNDNE------ 91

Query: 121 SSSDANYCFDRLDDEQLMSMFSDDISV--SVPPTASSSNPSTPSDQN--SNNDEKVTAPS 176
                   FD+ DDEQ +SMFSD+IS   ++PPT SSSNPS+PSDQN  +N++EK    +
Sbjct: 92  --------FDKFDDEQFLSMFSDEISGVNNMPPTLSSSNPSSPSDQNFVNNDNEKEKKEN 143

Query: 177 DQQQQQKQQ-QQQPKNEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRILA 235
           D  + +K++ ++Q K EP EVES CK           + T   S+ D I DPKRVKRILA
Sbjct: 144 DLGEMKKEEDEKQLKYEPDEVESQCKQENSQPQSNNNNVT---SSNDRITDPKRVKRILA 200

Query: 236 NRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295
           NRQSAQRSRVRKLQYISELERSVT+LQTEVS LSPRVAFLDHQRL+LNVDNSALKQRIAA
Sbjct: 201 NRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAA 260

Query: 296 LAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNATPPPQQPP 347
           LAQDK+FKDAHQEALK+EIERLRQVYH QN+KKM+N N S     P P Q P
Sbjct: 261 LAQDKLFKDAHQEALKREIERLRQVYHHQNLKKMENANGS---PLPSPSQKP 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820612|ref|XP_002878189.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297324027|gb|EFH54448.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  320 bits (819), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 190/356 (53%), Positives = 218/356 (61%), Gaps = 72/356 (20%)

Query: 1   MAQLPPKIPNMSH-NWSSFPYQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHN 59
           MAQLPPKIP M+  NW  F  Q++  I++                               
Sbjct: 1   MAQLPPKIPTMTTPNWPDFSSQKLPSIAATAAAAA------------------TAGPQQQ 42

Query: 60  QPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNI 119
            P W+DEFLDFS+ RRG HRRSISDS+AFL+PPSS V                       
Sbjct: 43  NPSWMDEFLDFSATRRGTHRRSISDSIAFLEPPSSGV----------------------- 79

Query: 120 MSSSDANYCFDRLDDEQLMSMFSDDISVS-------------VPPTASSSNPSTPSDQNS 166
                 N+ FDR DDEQ MSMF+DD+  +             V PT SSSN STPSD NS
Sbjct: 80  -----GNHHFDRFDDEQFMSMFNDDVHNNNHHHHHHHNINGNVGPTRSSSNTSTPSDHNS 134

Query: 167 NNDE---KVTAPSDQQQQQK-------QQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTP 216
            +D+   K   PSDQ    +              NEP EV+S CK  EP     + +Q  
Sbjct: 135 LSDDENNKEQPPSDQDHHMENNVANQNNAAGNNYNEPDEVQSQCK-TEPQDG-PSANQNS 192

Query: 217 PASNGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD 276
             S+G+ I DPKRVKRILANRQSAQRSRVRKLQYISELERSVT+LQTEVS LSPRVAFLD
Sbjct: 193 GGSSGNRIHDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLD 252

Query: 277 HQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNN 332
           HQRL+LNVDNSA+KQRIAALAQDKIFKDAHQEALK+EIERLRQVYHQQ++KKM+NN
Sbjct: 253 HQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQSLKKMENN 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806839|ref|NP_001241568.1| transcription factor bZIP58 [Glycine max] gi|255641640|gb|ACU21092.1| unknown [Glycine max]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/342 (56%), Positives = 226/342 (66%), Gaps = 51/342 (14%)

Query: 1   MAQLPPKIPNMSHNWSSFP--YQRMSFISSNNNNNNDNNNNNIANAATTMTLNNNNNIHH 58
           MAQLPPKIPNMS +W  F    Q+M     NNN                 T+ NN + H+
Sbjct: 1   MAQLPPKIPNMSPSWPDFSSHQQKMQLPPLNNNG----------------TITNNYHQHN 44

Query: 59  NQPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNSNNNNNNSTMNN 118
             P WVDEFLDFSS RRG HRRS+SDS+ +LD P       +C  + N+NNN N      
Sbjct: 45  QNPSWVDEFLDFSSARRGVHRRSVSDSITYLDSPV------KCGGNKNNNNNENE----- 93

Query: 119 IMSSSDANYCFDRLDDEQLMSMFSDDISVS---VPP--TASSSNPSTPSDQNSNNDEKVT 173
                     FD+ DDEQ MSMF+D++ +S   +PP  T SSSNPS+P DQN  NDEK  
Sbjct: 94  ----------FDKFDDEQFMSMFTDEVVLSGVPLPPPTTLSSSNPSSPYDQNFINDEKEK 143

Query: 174 APSDQQQQQKQQQQQPKNEPGEVESSCKNNEPSSSQTTTHQTPPASNGDTIIDPKRVKRI 233
               +++++     Q KNE  EVES CK           + T   S+ + I DPKRVKRI
Sbjct: 144 K---EEEEEHHHHHQLKNEADEVESQCKQE----IMQLPNDTNTCSSSERITDPKRVKRI 196

Query: 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293
           LANRQSAQRSRVRKLQYISELERSVT+LQ EVS LSPRVAFLDHQRL+LNVDNSALKQRI
Sbjct: 197 LANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRI 256

Query: 294 AALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNS 335
           AALAQDKIFKDAHQEALK+EIERLRQVY+QQ++KKM+N   S
Sbjct: 257 AALAQDKIFKDAHQEALKREIERLRQVYYQQSLKKMENAAGS 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2085425	329	BZIP61 [Arabidopsis thaliana (	0.358	0.395	0.765	6.5e-74
TAIR|locus:2053761	321	BZIP34 "AT2G42380" [Arabidopsi	0.517	0.585	0.556	1.5e-66
TAIR|locus:2196225	374	AT1G58110 "AT1G58110" [Arabido	0.239	0.232	0.574	3e-26
TAIR|locus:2175473	307	AT5G04840 "AT5G04840" [Arabido	0.231	0.273	0.535	2e-21
TAIR|locus:2031123	341	VIP1 "VIRE2-interacting protei	0.267	0.284	0.515	1.9e-19
TAIR|locus:2008673	300	AT1G35490 "AT1G35490" [Arabido	0.242	0.293	0.419	2.6e-19
TAIR|locus:2061908	367	AT2G40620 "AT2G40620" [Arabido	0.261	0.258	0.494	8.7e-19
TAIR|locus:2198856	423	AT1G06070 "AT1G06070" [Arabido	0.261	0.224	0.494	2.9e-18
TAIR|locus:2033123	337	bZIP52 "AT1G06850" [Arabidopsi	0.258	0.278	0.5	9.4e-18
TAIR|locus:2061340	398	AT2G31370 [Arabidopsis thalian	0.261	0.238	0.505	2.3e-17

TAIR|locus:2085425 BZIP61 [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 6.5e-74, Sum P(4) = 6.5e-74
 Identities = 101/132 (76%), Positives = 108/132 (81%)

Query:   191 NEPGEVESSCKNNEXXXXXXXXXXXXXXXNGDTIIDPKRVKRILANRQSAQRSRVRKLQY 250
             NE  EV+S CK                  +G+ I DPKRVKRILANRQSAQRSRVRKLQY
Sbjct:   169 NESDEVQSQCKTEPQDGPSANQNSGGS--SGNRIHDPKRVKRILANRQSAQRSRVRKLQY 226

Query:   251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL 310
             ISELERSVT+LQTEVS LSPRVAFLDHQRL+LNVDNSA+KQRIAALAQDKIFKDAHQEAL
Sbjct:   227 ISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEAL 286

Query:   311 KKEIERLRQVYH 322
             K+EIERLRQVYH
Sbjct:   287 KREIERLRQVYH 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2053761 BZIP34 "AT2G42380" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
 Identities = 114/205 (55%), Positives = 125/205 (60%)

Query:   129 FDRLDDEQLMSMFSDDIXXXXXXX-----------XXXXXXXXXXXXXXXXXEKVTAPSD 177
             FDR DDEQ MSMF+DD                                     K   PSD
Sbjct:    84 FDRFDDEQFMSMFTDDDNLHSNPSHINNKNNNVGPTGSSSNTSTPSNSFNDDNKELPPSD 143

Query:   178 XXXXXXXXXXXPKNEPGEVESSCKNNEXXXXXXXXXXXXXXXNGDTIIDPKRVKRILANR 237
                          N   EV+S CK                  +G+ I+DPKRVKRILANR
Sbjct:   144 HNMNNNIN----NNYNDEVQSQCKMEPEDGTASNNNSGDS--SGNRILDPKRVKRILANR 197

Query:   238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297
             QSAQRSRVRKLQYISELERSVT+LQ EVS LSPRVAFLDHQRL+LNVDNSALKQRIAAL+
Sbjct:   198 QSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALS 257

Query:   298 QDKIFKDAHQEALKKEIERLRQVYH 322
             QDK+FKDAHQEALK+EIERLRQVY+
Sbjct:   258 QDKLFKDAHQEALKREIERLRQVYN 282

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2196225 AT1G58110 "AT1G58110" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
 Identities = 50/87 (57%), Positives = 67/87 (77%)

Query:   235 ANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294
             A +Q AQRSRVRKLQYISELER+V TLQ E S +S  + FL+ + LIL+++N ALK+R+ 
Sbjct:   238 AKQQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKALKKRLE 297

Query:   295 ALAQDKIFKDAHQEALKKEIERLRQVY 321
             ++AQ+K+ K   QE L+KEI RLR +Y
Sbjct:   298 SIAQEKLIKQLEQEVLEKEIGRLRALY 324

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2175473 AT5G04840 "AT5G04840" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 45/84 (53%), Positives = 59/84 (70%)

Query:   235 ANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294
             A R   QRSRVRKLQYI+ELER+V  LQT  + LS RVA L   R  L+++NS LKQ++A
Sbjct:   177 AKRNPGQRSRVRKLQYIAELERTVGMLQTVEADLSVRVASLLQTRATLSLENSQLKQQMA 236

Query:   295 ALAQDKIFKDAHQEALKKEIERLR 318
              L QDK+ ++   + LKKE +RL+
Sbjct:   237 ILKQDKLIREGEYQLLKKEAQRLK 260

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2031123 VIP1 "VIRE2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 50/97 (51%), Positives = 63/97 (64%)

Query:   224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283
             ++DPKR KRILANRQSA RS+ RK++Y  ELER V TLQ E + LS +V  L      LN
Sbjct:   192 LLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELN 251

Query:   284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320
              +N  LK R+ AL Q    +DA  EAL+ E+ RL+ V
Sbjct:   252 TENKHLKMRLQALEQQAELRDALNEALRDELNRLKVV 288

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045596 "negative regulation of cell differentiation" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IDA

GO:0051170 "nuclear import" evidence=IDA

GO:0051019 "mitogen-activated protein kinase binding" evidence=IPI

GO:0008272 "sulfate transport" evidence=IMP

GO:0009970 "cellular response to sulfate starvation" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2008673 AT1G35490 "AT1G35490" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 39/93 (41%), Positives = 63/93 (67%)

Query:   226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVD 285
             D KR+K      Q+A R+R+R+L+YIS+LER++  LQ E   +S  + +LD Q L+L+++
Sbjct:   171 DSKRIKH-----QNAHRARLRRLEYISDLERTIQVLQVEGCEMSSAIHYLDQQLLMLSME 225

Query:   286 NSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318
             N ALKQR+ +LA+ +  K   Q+ L++EI  L+
Sbjct:   226 NRALKQRMDSLAEIQKLKHVEQQLLEREIGNLQ 258

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2061908 AT2G40620 "AT2G40620" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 8.7e-19, P = 8.7e-19
 Identities = 47/95 (49%), Positives = 64/95 (67%)

Query:   224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283
             ++DPKR KRI+ANRQSA RS+ RK +YI ELER V TLQTE + LS +++        L+
Sbjct:   146 VVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLS 205

Query:   284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318
              +N+ LK R+  + Q    +DA  E LKKE+ERL+
Sbjct:   206 SENTELKLRLQVMEQQAKLRDALNEQLKKEVERLK 240

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2198856 AT1G06070 "AT1G06070" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 47/95 (49%), Positives = 66/95 (69%)

Query:   224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283
             +IDPKR KRI ANRQSA RS+ RK++YI+ELER V TLQTE ++LS ++  L      L 
Sbjct:   208 LIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLG 267

Query:   284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318
             V+N+ LK R+  + Q    +DA  +ALK+E++ L+
Sbjct:   268 VENNELKLRVQTMEQQVHLQDALNDALKEEVQHLK 302

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2033123 bZIP52 "AT1G06850" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 9.4e-18, P = 9.4e-18
 Identities = 47/94 (50%), Positives = 63/94 (67%)

Query:   225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNV 284
             IDPKR KRILANRQSA RS+ RK +YI ELER V +LQTE + LS ++         L  
Sbjct:   147 IDPKRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLAN 206

Query:   285 DNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318
             +N+ LK R+ A+ Q    ++A  EAL+KE+ER++
Sbjct:   207 ENTELKLRLQAMEQQAQLRNALNEALRKEVERMK 240

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2061340 AT2G31370 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 48/95 (50%), Positives = 62/95 (65%)

Query:   224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283
             +IDPKR KRI ANRQSA RS+ RK +YI ELER V TLQTE + LS ++  L      L 
Sbjct:   199 LIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLT 258

Query:   284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318
             V+N+ LK R+  + Q    +D   EALK+EI+ L+
Sbjct:   259 VENNELKLRLQTMEQQVHLQDELNEALKEEIQHLK 293

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027772001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (319 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
smart00338	65	smart00338, BRLZ, basic region leucin zipper	4e-12
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	6e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-04
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.001
pfam03131	93	pfam03131, bZIP_Maf, bZIP Maf transcription factor	0.002
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	0.003

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 23/63 (36%), Positives = 31/63 (49%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVD 285
           D KR +R   NR++A+RSR RK   I ELER V  L+ E   L   +  L  +   L  +
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 286 NSA 288
              
Sbjct: 63  LEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRV 272
           KR +R   NR++A+RSR+RK  YI ELE  V  L+ E   L   +
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSEL 49

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278
           D  R +R   N ++A+RSR +K Q   ELE  V  L+ E + L  +V  L+ +
Sbjct: 3   DEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54

Length = 54

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 223 TIIDPKRVKRILANRQSAQRSRVRKLQY-ISELERSVTTLQTEVSALSPRVAFLD---HQ 278
           T  + +R   +   R       V +L+   SEL+R +  L+ E+  L   +         
Sbjct: 409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468

Query: 279 RLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321
           ++  + +  A  +RI  L ++   K    E L++++  LR++ 
Sbjct: 469 KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511

Length = 652

>gnl|CDD|190534 pfam03131, bZIP_Maf, bZIP Maf transcription factor

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLI 281
           + +I  K+ +R L NR  AQ  R +++Q   ELE+  + LQ +V  L   V+     RL 
Sbjct: 24  EEVIRLKQRRRTLKNRGYAQSCRSKRVQQRHELEKEKSQLQQQVEQLKQEVS-----RLA 78

Query: 282 LNVDNSALKQRIAALA 297
              D  ALK +  AL 
Sbjct: 79  RERD--ALKAKYEALQ 92

Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerisation and DNA binding property. Thus, this family is probably related to pfam00170. Length = 93

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
            R ++   NR++A+RSR RK++ + +LE  V  L +E S L   V  L
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRL 49

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
smart00338	65	BRLZ basic region leucin zipper.	99.4
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.3
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.25
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.11
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.04
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.94
KOG3584	348	consensus cAMP response element binding protein an	98.76
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.1
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.02
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.83
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.22
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	97.16
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.85
PRK13169	110	DNA replication intiation control protein YabA; Re	96.65
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.43
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.13
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.06
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	96.03
PRK10884	206	SH3 domain-containing protein; Provisional	95.65
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.58
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.54
COG4467	114	Regulator of replication initiation timing [Replic	94.91
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.85
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.72
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	94.56
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	94.55
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	94.55
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.45
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	94.32
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.24
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.17
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	94.1
PRK11637	428	AmiB activator; Provisional	94.07
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.04
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	94.01
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.94
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.44
PRK09039	343	hypothetical protein; Validated	93.41
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	93.21
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.05
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.03
COG2433	652	Uncharacterized conserved protein [Function unknow	93.0
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	92.99
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	92.88
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.71
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.64
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.53
PRK11637	428	AmiB activator; Provisional	92.52
COG2433	652	Uncharacterized conserved protein [Function unknow	92.37
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.35
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.34
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	92.31
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	92.18
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.04
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	91.74
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.71
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.49
PF14662	193	CCDC155: Coiled-coil region of CCDC155	91.44
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	91.42
PRK02119	73	hypothetical protein; Provisional	91.42
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	91.42
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	91.23
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.2
PRK02793	72	phi X174 lysis protein; Provisional	91.18
PRK00295	68	hypothetical protein; Provisional	91.12
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.98
PRK10884	206	SH3 domain-containing protein; Provisional	90.76
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	90.65
PRK04325	74	hypothetical protein; Provisional	90.61
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.61
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.53
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.53
PRK00736	68	hypothetical protein; Provisional	90.51
KOG4571	294	consensus Activating transcription factor 4 [Trans	90.41
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.41
PRK04406	75	hypothetical protein; Provisional	90.41
PRK09039	343	hypothetical protein; Validated	90.18
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	90.07
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.02
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	89.9
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	89.82
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.76
PHA02562	562	46 endonuclease subunit; Provisional	89.69
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	89.68
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	89.65
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	89.58
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	89.55
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.31
PRK13922	276	rod shape-determining protein MreC; Provisional	89.27
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	89.17
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	89.16
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	89.14
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	89.1
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	89.04
PRK13169	110	DNA replication intiation control protein YabA; Re	88.87
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.86
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.75
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	88.63
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	88.42
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	88.38
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.34
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	88.33
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	88.26
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.06
KOG3119	269	consensus Basic region leucine zipper transcriptio	88.03
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.58
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	87.53
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.45
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	87.38
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	87.26
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	87.23
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	87.01
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	86.82
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	86.81
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.79
PRK00846	77	hypothetical protein; Provisional	86.67
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.54
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.54
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.7
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	85.54
PRK00888	105	ftsB cell division protein FtsB; Reviewed	85.51
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.46
PRK04863	1486	mukB cell division protein MukB; Provisional	85.25
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	85.05
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	85.01
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	84.97
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	84.97
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	84.91
PF15058	200	Speriolin_N: Speriolin N terminus	84.79
KOG4807	593	consensus F-actin binding protein, regulates actin	84.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	84.67
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	84.64
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	84.63
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	84.35
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	84.33
PHA02562	562	46 endonuclease subunit; Provisional	84.13
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.03
KOG1962	216	consensus B-cell receptor-associated protein and r	83.99
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	83.97
COG4467	114	Regulator of replication initiation timing [Replic	83.87
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	83.74
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	83.59
PRK12704	520	phosphodiesterase; Provisional	83.54
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	83.26
PF15294	278	Leu_zip: Leucine zipper	83.25
PRK02224	880	chromosome segregation protein; Provisional	83.21
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.15
TIGR02231	525	conserved hypothetical protein. This family consis	82.67
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	82.67
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	82.6
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	82.44
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	82.38
PRK10803	263	tol-pal system protein YbgF; Provisional	82.35
PRK13922	276	rod shape-determining protein MreC; Provisional	82.27
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.25
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	82.1
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	81.98
smart00338	65	BRLZ basic region leucin zipper.	81.92
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.81
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	81.78
KOG0933	1174	consensus Structural maintenance of chromosome pro	81.71
PRK02119	73	hypothetical protein; Provisional	81.59
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	81.45
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	81.24
PRK02224	880	chromosome segregation protein; Provisional	81.11
PRK05431	425	seryl-tRNA synthetase; Provisional	81.08
KOG3650	120	consensus Predicted coiled-coil protein [General f	81.08
PRK04406	75	hypothetical protein; Provisional	80.98
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	80.73
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	80.38
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	80.26
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.14

>smart00338 BRLZ basic region leucin zipper

Probab=99.40  E-value=2.4e-12  Score=98.30  Aligned_cols=62  Identities=37%  Similarity=0.398  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDN  286 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN  286 (363)
                      .|+|+.||+++||+||++||.||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999988876655555443

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.30  E-value=1.6e-11  Score=93.56  Aligned_cols=62  Identities=39%  Similarity=0.503  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNS  287 (363)
Q Consensus       226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~  287 (363)
                      +.|+.+|+++||+||+++|.||+.||++||.+|..|+.+|..|..++..|...+..|..+|.
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56889999999999999999999999999999999999999999999999888888877763

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.25  E-value=6.2e-11  Score=112.98  Aligned_cols=76  Identities=28%  Similarity=0.271  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK  300 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~  300 (363)
                      -++|-.||+|+||.+||-+|.|||++++++|..|..|..||..|..+...|+.++..|..+|.+|.++|+.+.+++
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l  141 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL  141 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3889999999999999999999999999999999999999999999999999999999999999999999887754

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.11  E-value=1.1e-10  Score=120.82  Aligned_cols=69  Identities=35%  Similarity=0.355  Sum_probs=62.9

Q ss_pred             CCCCHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          223 TIIDPK---RVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ  291 (363)
Q Consensus       223 ~~~D~K---R~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq  291 (363)
                      ..+|.|   |..|||+||+||..||+|||+|+..||.+++.|..||..|+.+.+.|.+++..|..||..||-
T Consensus       273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv  344 (655)
T KOG4343|consen  273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV  344 (655)
T ss_pred             CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence            445654   666999999999999999999999999999999999999999999999999999999998863

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.04  E-value=1.2e-09  Score=81.37  Aligned_cols=52  Identities=40%  Similarity=0.484  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDH  277 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~q  277 (363)
                      .|+++.||+ +||+||++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467888888 9999999999999999999999999999999999888887754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.94  E-value=1.1e-09  Score=111.83  Aligned_cols=67  Identities=34%  Similarity=0.447  Sum_probs=57.7

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      ...||+||+|+|.+|||.||+|||.||+.||.+|....+||.+|..+|..|+.       +|..|-++|..|..
T Consensus       248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~-------~N~sLl~qL~klQt  314 (472)
T KOG0709|consen  248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL-------SNRSLLAQLKKLQT  314 (472)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-------ccHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999888764       56666666665533

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=98.76  E-value=1.3e-08  Score=99.51  Aligned_cols=52  Identities=31%  Similarity=0.458  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDH  277 (363)
Q Consensus       226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~q  277 (363)
                      -.||.-|+++|||+||.+|+|||+||..||.+|..|+.+|..|-++|..|.+
T Consensus       289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe  340 (348)
T KOG3584|consen  289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE  340 (348)
T ss_pred             hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence            4677779999999999999999999999999999999999998888777754

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.10  E-value=8.6e-06  Score=78.92  Aligned_cols=53  Identities=36%  Similarity=0.471  Sum_probs=45.6

Q ss_pred             CHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          226 DPKRVKR-ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ  278 (363)
Q Consensus       226 D~KR~RR-~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq  278 (363)
                      +.+|+.| .++||++|.+||+||+++|.+||.+|..|..+|..|...+..|.++
T Consensus       203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~  256 (279)
T KOG0837|consen  203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ  256 (279)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence            3445555 7999999999999999999999999999999999998887776543

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.02  E-value=6.2e-08  Score=79.20  Aligned_cols=57  Identities=37%  Similarity=0.504  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          223 TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR  279 (363)
Q Consensus       223 ~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~  279 (363)
                      ...+.|.+||.++||.+|++||.||+.++.+||..+..|+.+...|..++..+..++
T Consensus        25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~   81 (92)
T PF03131_consen   25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER   81 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335679999999999999999999999999999999988887777766666555433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.83  E-value=0.002  Score=63.51  Aligned_cols=58  Identities=21%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             CCCCCCCCCHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          218 ASNGDTIIDPKRVKRI-LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL  275 (363)
Q Consensus       218 ~~~~~~~~D~KR~RR~-LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L  275 (363)
                      ++......++|+.||+ +.|..+|.|.|+||+.-.+.|+.+...|+.+|.+|+.++..|
T Consensus       216 ~s~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l  274 (294)
T KOG4571|consen  216 KSAHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL  274 (294)
T ss_pred             ccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667788888874 455556999999999999999998888777666665544433

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.22  E-value=0.003  Score=56.18  Aligned_cols=47  Identities=36%  Similarity=0.493  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSP  270 (363)
Q Consensus       224 ~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~  270 (363)
                      .+-.|..||-|+||=.|+-+|.|+.+.-.+||.+...|..++..|..
T Consensus        49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~   95 (135)
T KOG4196|consen   49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKE   95 (135)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999888888777666665555543

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=97.16  E-value=0.00066  Score=72.27  Aligned_cols=68  Identities=34%  Similarity=0.406  Sum_probs=55.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696          230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA  305 (363)
Q Consensus       230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA  305 (363)
                      +||.=+||.+||++|+||+.-|..||..|..|+.|..+|..+       ...+..+-.++|++|..|.++. +++.
T Consensus       492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~~V-f~~l  559 (604)
T KOG3863|consen  492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQEV-FQQL  559 (604)
T ss_pred             cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            468889999999999999999999999999999988887654       3445567788999999998763 4443

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.85  E-value=0.0066  Score=58.71  Aligned_cols=54  Identities=28%  Similarity=0.317  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL  275 (363)
Q Consensus       222 ~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L  275 (363)
                      ....|++=..|.-+|=++++|||.+.++...++..+|..|+.||..|+.+|..|
T Consensus       188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l  241 (269)
T KOG3119|consen  188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL  241 (269)
T ss_pred             hhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566789999999999999999888888888888777776554443

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.65  E-value=0.0075  Score=51.96  Aligned_cols=75  Identities=21%  Similarity=0.374  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq  324 (363)
                      ..+..||.++..|..+...|+..+..|.+++..|..||..||.+|..+.+...-+... ..+-+=-+.|..+|..+
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~-~~~~~g~~NL~~LY~EG   82 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKK-KKEGEGKDNLARLYQEG   82 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-ccccchHHHHHHHHHcC
Confidence            3578999999999999999999999999999999999999999999874421111100 01112236777777754

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.43  E-value=0.016  Score=49.50  Aligned_cols=76  Identities=21%  Similarity=0.374  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHhhh
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA--HQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA--~~E~LkkEIerLRql~~qq  324 (363)
                      ..|.+||.++..|..+...|+..+..|.+++..|..||..||.+|..+.+....+..  ....+.+=-+.|..+|..+
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~EG   85 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQEG   85 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhcC
Confidence            467899999999999999999999999999999999999999999998661111110  0012334455666676643

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.13  E-value=0.15  Score=40.92  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      +-++.||.+|+.+-..+..|..++..|.+++..|..+|..|+.....|.++
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e   54 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE   54 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            457889999998888888888888888888888888888888877777654

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.06  E-value=0.21  Score=43.68  Aligned_cols=86  Identities=17%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696          238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL  317 (363)
Q Consensus       238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL  317 (363)
                      .+=-.+|.|=+.+.+.|..++..|..++..|...+..|..++..+..+...+..+...+.....-.......++.|+.+|
T Consensus        41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl  120 (151)
T PF11559_consen   41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL  120 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555556666666666666666666666666666666666666666666666666555544444555566677766


Q ss_pred             HHHHhh
Q 037696          318 RQVYHQ  323 (363)
Q Consensus       318 Rql~~q  323 (363)
                      +..+.+
T Consensus       121 k~~~~~  126 (151)
T PF11559_consen  121 KNQLQQ  126 (151)
T ss_pred             HHHHHH
Confidence            655553

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=96.03  E-value=0.11  Score=41.31  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ  319 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq  319 (363)
                      .||..|..|+..+..+..+++.....+..|..|+...-.+|+....       .+..|+.|++.|+.
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~-------e~~~Lk~E~e~L~~   61 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE-------ENNKLKEENEALRK   61 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            4667777777777777777777766666666666666666655544       34444555544443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.65  E-value=0.19  Score=47.24  Aligned_cols=55  Identities=15%  Similarity=0.127  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696          261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE  315 (363)
Q Consensus       261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe  315 (363)
                      +..+..+|..+++...++...|..||+.|++++..+..+...-+++++.+++.+.
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777777888889999999888887766555666666666553

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.58  E-value=1.2  Score=49.76  Aligned_cols=26  Identities=31%  Similarity=0.687  Sum_probs=15.8

Q ss_pred             CCCC---CCCC--CCCCCCCCCccccccccC
Q 037696            3 QLPP---KIPN--MSHNWSSFPYQRMSFISS   28 (363)
Q Consensus         3 qlpp---kip~--~~~~w~~~~~~~~~~~~~   28 (363)
                      +|||   |.|.  ....||.|++..+.++..
T Consensus        90 ~LPPsll~~~~~~~p~~~p~fg~Gsls~~qp  120 (1118)
T KOG1029|consen   90 VLPPSLLKQPPRNAPSTWPGFGMGSLSYSQP  120 (1118)
T ss_pred             CCChHHhccCCcCCCCCCCccCCCCcCcCCC
Confidence            4555   3343  346899999876644433

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.54  E-value=0.17  Score=40.32  Aligned_cols=52  Identities=19%  Similarity=0.130  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      +.+++-|.+++...+.++..|..+-.....+....-.+|..|+.++..|.++
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788888888888888888888888888888888888888877666543

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.91  E-value=0.072  Score=46.35  Aligned_cols=46  Identities=22%  Similarity=0.401  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA  295 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~  295 (363)
                      -+.+||.++.+|-++...|+..+..|.+++..|..||..||.||+.
T Consensus         9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            4789999999999999999999999999999999999999999998

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.85  E-value=0.45  Score=39.29  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhh
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI----ERLRQVYHQ  323 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI----erLRql~~q  323 (363)
                      +-++.||.+|+..-..+.-|.-++..|.+++..|..|+..++..-..|.+       .++.|+.|-    +|||.++|.
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~-------en~qLk~E~~~WqerLr~LLGk   75 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQNGWQERLQALLGR   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            34677777777766666666666666655555555555554444444433       334444443    366777763

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.72  E-value=1.7  Score=42.21  Aligned_cols=97  Identities=23%  Similarity=0.278  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 037696          226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD---------HQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~---------qq~~~L~~EN~~LKqrL~~L  296 (363)
                      -+|-++.+..-.+.+.+.-.-++.-+++|+.+|..++.+...++.++..++         .++..|..|-..++.++..|
T Consensus        29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l  108 (239)
T COG1579          29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL  108 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777777888888888888899999999999999888888887764         34566677777777777777


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          297 AQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       297 ~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ..+..--+...+.|.+++.-|+-.+.
T Consensus       109 e~el~~l~~~~~~l~~~i~~l~~~~~  134 (239)
T COG1579         109 EDELAELMEEIEKLEKEIEDLKERLE  134 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654444444555555555554433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.56  E-value=0.71  Score=37.78  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ  291 (363)
Q Consensus       258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq  291 (363)
                      |..|..+|..|..++..+++.+..|..||..||+
T Consensus        27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~   60 (79)
T COG3074          27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKE   60 (79)
T ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444443

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=94.55  E-value=0.32  Score=47.64  Aligned_cols=83  Identities=20%  Similarity=0.315  Sum_probs=66.0

Q ss_pred             CCCCHHHHHHHHHhHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          223 TIIDPKRVKRILANRQS--AQRSRVRKLQY-ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       223 ~~~D~KR~RR~LsNRES--AqRSR~RKkqy-IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      ..++.||+|-..+-.-+  -++.|+-+.+| |.+|+.+-..|+.||..|+.....|.-+.+.|..+-..|++.|.++.++
T Consensus        68 EK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~  147 (292)
T KOG4005|consen   68 EKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ  147 (292)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence            34688888854433222  23456666666 6799999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 037696          300 KIFKDA  305 (363)
Q Consensus       300 ~~~KeA  305 (363)
                      ++..-.
T Consensus       148 ~~~~~~  153 (292)
T KOG4005|consen  148 QQHNTR  153 (292)
T ss_pred             HHHhhH
Confidence            876543

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=94.55  E-value=1.7  Score=40.49  Aligned_cols=97  Identities=22%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD  304 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke  304 (363)
                      -|-+-++.+|....+-+..+.+++.+...||.++..-..++..+..++..|++....|..+...|+........+..--.
T Consensus        86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk  165 (190)
T PF05266_consen   86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK  165 (190)
T ss_pred             CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788888899999999999999999999999887777888877777777776666665555544444332221112


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 037696          305 AHQEALKKEIERLRQVY  321 (363)
Q Consensus       305 A~~E~LkkEIerLRql~  321 (363)
                      +..+.+..++..++.-+
T Consensus       166 s~~~~l~~~~~~~e~~F  182 (190)
T PF05266_consen  166 SEAEALKEEIENAELEF  182 (190)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            22344445554444433

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.45  E-value=0.53  Score=37.44  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      +..||.+|..|=.....|..++..|.++...+..|+..|+.++..-
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A   47 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA   47 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=94.32  E-value=0.68  Score=38.68  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696          260 TLQTEVSALSPRVAFLDHQ------RLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV  320 (363)
Q Consensus       260 ~Lq~ENs~Ls~ela~L~qq------~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql  320 (363)
                      .+..+|..|..++..|+.+      ......||..|+.++..|..=.  .....|.+..||..||..
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~   85 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ   85 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence            4555666666666666643      4677889999999999886633  445678899999998864

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.24  E-value=0.37  Score=38.35  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      |+.|-.....|+.||..|..++..+..+...|...|..=+.+|..|
T Consensus         9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.17  E-value=0.56  Score=44.27  Aligned_cols=69  Identities=20%  Similarity=0.278  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      -|++|+..-..|..||..|...+..+.+....|..|+-.|+.++..+.+...+-    ..+.+|++.||....
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~   77 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAK   77 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            467888888888888888888888888888888888999998888885543332    245566666665544

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=94.10  E-value=0.74  Score=37.15  Aligned_cols=49  Identities=27%  Similarity=0.376  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLI--------LNVDNSALKQRIAALAQD  299 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~--------L~~EN~~LKqrL~~L~qe  299 (363)
                      +-+.|..+..|+.||=.|.-++-+|+++...        +..+|-+||..+..|..+
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e   58 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE   58 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999888763        456666666666555443

>PRK11637 AmiB activator; Provisional

Probab=94.07  E-value=1.2  Score=45.04  Aligned_cols=46  Identities=9%  Similarity=0.097  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA  297 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~  297 (363)
                      .+++.++..++.+...|..++..+.+++..+..+-..+..+|..+.
T Consensus        64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~  109 (428)
T PRK11637         64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN  109 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333334444444444433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.04  E-value=3  Score=38.92  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          243 SRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       243 SR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      .....+..+++++.++..|+.+...+..++....++...+...+...+..+.
T Consensus        57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666666666666666666666666666666666555555544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=94.01  E-value=1.2  Score=40.05  Aligned_cols=68  Identities=22%  Similarity=0.337  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696          248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ  323 (363)
Q Consensus       248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q  323 (363)
                      ++-|-.|..+-..|....-..+.++..+. |...|+.+|..|.++|..|..       ++..+..|+..++..|.+
T Consensus        46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~-Qk~eLE~~k~~L~qqv~~L~~-------e~s~~~~E~da~k~k~e~  113 (135)
T KOG4196|consen   46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQ-QKHELEKEKAELQQQVEKLKE-------ENSRLRRELDAYKSKYEA  113 (135)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            45556666666777777777888888875 567899999999999999876       568899999999998884

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.94  E-value=0.31  Score=44.59  Aligned_cols=48  Identities=21%  Similarity=0.331  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      |.+|+..+..|+.++..|..++......+..|..|...|..++..++.
T Consensus       118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~  165 (194)
T PF08614_consen  118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE  165 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444433333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.44  E-value=4.5  Score=35.36  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          231 KRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       231 RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .|=+.-|+.......++..-++.|+..+..|+.++..+..++..+..+...|..+++.+...+...
T Consensus        48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~  113 (151)
T PF11559_consen   48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE  113 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666777777776666666666666666555555555555544444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK09039 hypothetical protein; Validated

Probab=93.41  E-value=2.9  Score=41.96  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      |+.+...|+.+++.|+..+..++.+....+.+|..|
T Consensus       142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=93.21  E-value=0.89  Score=41.90  Aligned_cols=59  Identities=24%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ....|+.||..|..++..|.+++..|..||..|++++..+..++       +.|..=++|-|.+..
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY-------~~L~~Im~RARkl~~  156 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY-------QTLIDIMDRARKLAV  156 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence            46677888888999999999888899999999988888876653       566666666666543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.05  E-value=5  Score=35.12  Aligned_cols=44  Identities=25%  Similarity=0.347  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037696          282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN  325 (363)
Q Consensus       282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~  325 (363)
                      |..+-..|..|...+-+=.--|....|+|+..|..||..|..|=
T Consensus        73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi  116 (120)
T PF12325_consen   73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI  116 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444443333223366788999999999999998663

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.03  E-value=1.8  Score=39.59  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .+.++++.+.+.+..-+.-.......|.+++..+..|+.|...|..++..++.++..|..||..|-+|....
T Consensus       113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666666777777888888888888888888888888888888888888777654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=93.00  E-value=1.1  Score=48.78  Aligned_cols=73  Identities=22%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNV---DNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~---EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      .+.+|+..+..|+.++..|..++..+.+....-..   |-..+..++..|+..+.-+....|.|++++.+|+.+..
T Consensus       437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~  512 (652)
T COG2433         437 ENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK  512 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555555555555444332222   22334455666666666666677778887777775544

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=92.99  E-value=0.5  Score=49.80  Aligned_cols=46  Identities=17%  Similarity=0.252  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA  295 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~  295 (363)
                      ..++||.+++.|+.|...|..+...+++++..|+.||..|+.++..
T Consensus        77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a  122 (475)
T PRK13729         77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA  122 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5689999999999999999999999999999999999999888743

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=92.88  E-value=0.58  Score=38.50  Aligned_cols=48  Identities=31%  Similarity=0.347  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      -++|..++..|+.....|..++..+.+.+..|..||.-|..-|..|..
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888999999999999999999999999999999999999988744

The exact function is unknown.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.71  E-value=7.3  Score=35.08  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      +.....|++.+-+--.-+++.|..|+.++..+..+...|...+..+......|..+-...+.+|..|...
T Consensus        33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~  102 (140)
T PF10473_consen   33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL  102 (140)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345567777777777778888888888888888888888777777777777777777777777777654

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.64  E-value=5.2  Score=43.08  Aligned_cols=95  Identities=19%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHH
Q 037696          232 RILANRQSAQRSRVRKLQYISELERSVTTLQT-------EVSALSPRVAFLDHQRL----ILNVDNSALKQRIAALAQDK  300 (363)
Q Consensus       232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~-------ENs~Ls~ela~L~qq~~----~L~~EN~~LKqrL~~L~qe~  300 (363)
                      .+..-|+..+.+....+..|++|..++..+..       |+..|..++........    ....|-.+||..|..+..++
T Consensus       354 q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEK  433 (546)
T PF07888_consen  354 QWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEK  433 (546)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666677777776655443       55556666655443332    22222234555333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696          301 IFKDAHQEALKKEIERLRQVYHQQNI  326 (363)
Q Consensus       301 ~~KeA~~E~LkkEIerLRql~~qq~~  326 (363)
                      .---.+...|+..|.+|++-++....
T Consensus       434 Eql~~EkQeL~~yi~~Le~r~~~~~~  459 (546)
T PF07888_consen  434 EQLQEEKQELLEYIERLEQRLDKVAD  459 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            22223456788899999998886554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.53  E-value=2.5  Score=36.95  Aligned_cols=17  Identities=18%  Similarity=0.372  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHhhh
Q 037696          308 EALKKEIERLRQVYHQQ  324 (363)
Q Consensus       308 E~LkkEIerLRql~~qq  324 (363)
                      +.|...-+.+.++||..
T Consensus        78 ~~l~~ry~t~LellGEK   94 (120)
T PF12325_consen   78 EELQQRYQTLLELLGEK   94 (120)
T ss_pred             HHHHHHHHHHHHHhcch
Confidence            34444444555555543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK11637 AmiB activator; Provisional

Probab=92.52  E-value=4  Score=41.45  Aligned_cols=71  Identities=20%  Similarity=0.176  Sum_probs=40.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          229 RVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       229 R~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      +++.+.+.....+......+..+.+++.++..|+.+...+..++..++++...+..+-..|..+|..+..+
T Consensus        48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~  118 (428)
T PRK11637         48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ  118 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444555566666666666666666666666666666666666666666665443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.37  E-value=2.9  Score=45.54  Aligned_cols=71  Identities=25%  Similarity=0.315  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ...+..|+.+|+.|+.||+.|..++..+......|..+-..++.++..    ...++-+.+.+..+|.+|+..+.
T Consensus       421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~----~~~~~rei~~~~~~I~~L~~~L~  491 (652)
T COG2433         421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD----KVRKDREIRARDRRIERLEKELE  491 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHH
Confidence            445778888999999999999998888887777777777666666651    12233344555555555555444

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.35  E-value=2.4  Score=34.07  Aligned_cols=36  Identities=28%  Similarity=0.236  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          259 TTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       259 ~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      ..|+.|+.+|..+...|.+.+..|..||..|++.-.
T Consensus        21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~   56 (72)
T PF06005_consen   21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERN   56 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333444444443333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.34  E-value=5.8  Score=38.17  Aligned_cols=81  Identities=14%  Similarity=0.064  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-Hhh
Q 037696          245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV-YHQ  323 (363)
Q Consensus       245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql-~~q  323 (363)
                      ...-.+|.+++.+...|..|-.....+|....+.+..|+..-+.++............++.+...|+.+|+++|.- +|.
T Consensus        28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl  107 (230)
T PF10146_consen   28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL  107 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3455789999999999999999999999999999999988888888888777777767777888999999999998 664


Q ss_pred             hh
Q 037696          324 QN  325 (363)
Q Consensus       324 q~  325 (363)
                      ..
T Consensus       108 ~~  109 (230)
T PF10146_consen  108 EP  109 (230)
T ss_pred             CC
Confidence            33

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=92.31  E-value=0.71  Score=36.27  Aligned_cols=48  Identities=23%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      ++|.+||.++..++.-+.+|...|....++...|..+.+.|+.+|..+
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467788888887777777777777666666665555555555555554

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=92.18  E-value=3.4  Score=34.26  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          227 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       227 ~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .+|+.+.|.+=+++-..|.-+..-..+|+.+|+.|....+.|..++.....++..|+.-|.++..+|...
T Consensus        10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a   79 (89)
T PF13747_consen   10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888899988888888888999999999999999999999999999999999999999888764

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.04  E-value=9.6  Score=36.50  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 037696          257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF----KDAHQEALKKEIERLRQVYHQQN  325 (363)
Q Consensus       257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~----KeA~~E~LkkEIerLRql~~qq~  325 (363)
                      .+..++.|+..++.++..|..++..|...|..|..+|..+......    -.+....+..||..||.-+..+.
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~  282 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL  282 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence            3455677888888888888888888888888888888877654432    23445567777777777666543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=91.74  E-value=1.8  Score=48.21  Aligned_cols=74  Identities=24%  Similarity=0.306  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---
Q 037696          250 YISELERSVTTLQTEVSALSP---------------------RVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA---  305 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~---------------------ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA---  305 (363)
                      +|.++..++..+..||..|..                     ++..|..++..++.||..||-+|..+..++.++-.   
T Consensus        93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~  172 (769)
T PF05911_consen   93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEERE  172 (769)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555556666665544                     33455566666667777777776666555544321   


Q ss_pred             ------------------HHHHHHHHHHHHHHHHhh
Q 037696          306 ------------------HQEALKKEIERLRQVYHQ  323 (363)
Q Consensus       306 ------------------~~E~LkkEIerLRql~~q  323 (363)
                                        ..-.|..|.+|||.++..
T Consensus       173 ~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk  208 (769)
T PF05911_consen  173 YSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK  208 (769)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                              234678999999998873

The function of this family is unknown.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.71  E-value=6  Score=39.33  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696          240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ  319 (363)
Q Consensus       240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq  319 (363)
                      ...-..+..+.+.+||.+...|..|...|..+...+.++-..+-.+...+..++..+..+...-.+..+.+...+++||.
T Consensus        55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445555555555555555555555555555555555555555555555555555444444444555555555553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.49  E-value=1.3  Score=36.24  Aligned_cols=67  Identities=24%  Similarity=0.305  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHh
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI----ERLRQVYH  322 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI----erLRql~~  322 (363)
                      +-++.||.+|++.-.-..-|.-++..|.+++..|..|-+.+.....+|.+       .++.|+.|-    +|||.++|
T Consensus         4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~-------eneqlk~e~~~WQerlrsLLG   74 (79)
T COG3074           4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER-------ENEQLKEEQNGWQERLRALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence            45678888888766656666666666666555555555555555555544       445555553    57788777

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=91.44  E-value=4.8  Score=38.21  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .-|..++..|+.||..|..+...|..+...|..++..|+-+|-..+.
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~  144 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES  144 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45778888888888888888888888889998899999888854433

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=91.42  E-value=1.4  Score=46.59  Aligned_cols=28  Identities=25%  Similarity=0.256  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQR  279 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~  279 (363)
                      ..|+.+-+.|..||..|+.+...+.++.
T Consensus        76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i  103 (472)
T TIGR03752        76 AKLISENEALKAENERLQKREQSIDQQI  103 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4444555555555555555444444443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK02119 hypothetical protein; Provisional

Probab=91.42  E-value=1.3  Score=35.51  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSP  270 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~  270 (363)
                      +|.+||.++..++.-+.+|..
T Consensus        10 Ri~~LE~rla~QE~tie~LN~   30 (73)
T PRK02119         10 RIAELEMKIAFQENLLEELNQ   30 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=91.42  E-value=0.31  Score=44.88  Aligned_cols=52  Identities=15%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAH  306 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~  306 (363)
                      |+++|.++++-=..|.-|..+|    ++...|..+++.||.++..|.++.++++-+
T Consensus         2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~   53 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKL   53 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999888    456778889999999999998888666643

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=91.23  E-value=5.2  Score=46.03  Aligned_cols=86  Identities=16%  Similarity=0.246  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696          240 AQRSRVRKLQYISELERSV-TTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR  318 (363)
Q Consensus       240 AqRSR~RKkqyIeELE~kV-~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR  318 (363)
                      .++...+....|.+++.++ +.+..+..++..++..|.++...|+..+..|+.++..+...........+..+.+|..||
T Consensus       370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~  449 (1074)
T KOG0250|consen  370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR  449 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3334444444455555555 445555556666666666666666666666666666666655444444455777888887


Q ss_pred             HHHhhhh
Q 037696          319 QVYHQQN  325 (363)
Q Consensus       319 ql~~qq~  325 (363)
                      ....+.+
T Consensus       450 k~i~~~~  456 (1074)
T KOG0250|consen  450 KKIENIS  456 (1074)
T ss_pred             HHHHHHH
Confidence            7776655

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.20  E-value=15  Score=35.39  Aligned_cols=67  Identities=18%  Similarity=0.235  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696          257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ  323 (363)
Q Consensus       257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q  323 (363)
                      +...++.++..|.............|..+-..+...+..|.....-++...+.|+.++...|.....
T Consensus        55 k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~  121 (246)
T PF00769_consen   55 KRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE  121 (246)
T ss_dssp             HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444455555666666666777777777777778888887777765553

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK02793 phi X174 lysis protein; Provisional

Probab=91.18  E-value=1.4  Score=35.12  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFL  275 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L  275 (363)
                      ++|.+||.++..++.-+.+|..-|...
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Q   34 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAH   34 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556665555555555554444433

>PRK00295 hypothetical protein; Provisional

Probab=91.12  E-value=1.7  Score=34.33  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQR  279 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~  279 (363)
                      +|.+||.++..++.-+..|...|...+++.
T Consensus         6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I   35 (68)
T PRK00295          6 RVTELESRQAFQDDTIQALNDVLVEQQRVI   35 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888888777777777666655544443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.98  E-value=4.8  Score=37.57  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      +..+..++..++..+..|..++..+.++...+..+-.+++..+.....
T Consensus        58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~  105 (302)
T PF10186_consen   58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS  105 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445555555555555554444444444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.76  E-value=5.1  Score=37.83  Aligned_cols=46  Identities=13%  Similarity=0.197  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      +|..++..+..+..+|..++..|.+++..+..|+..|+.++..+..
T Consensus       122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333344444444444444433

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=90.65  E-value=0.74  Score=33.99  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          260 TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      +|+.+...|......|...+..|..||..|+.+|..|..
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555666666666666666667777777777766654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK04325 hypothetical protein; Provisional

Probab=90.61  E-value=1.7  Score=34.83  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      +|.+||.++..++.-+..|..-|..-+
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq   36 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVARQQ   36 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366666666666665555555444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.61  E-value=7.1  Score=43.05  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          242 RSRVRKLQYISELERSVTTLQTEVSALSPRVAFL  275 (363)
Q Consensus       242 RSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L  275 (363)
                      ++|.+=++-|..||+++...+..-..|..+|...
T Consensus       481 ~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE  514 (697)
T PF09726_consen  481 QARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE  514 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555444444444443

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.53  E-value=11  Score=40.83  Aligned_cols=66  Identities=15%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI  293 (363)
Q Consensus       228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL  293 (363)
                      |....+++-..........-+..++.|+..+...+.++..|..+...+......|..|+..|+.+.
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~  215 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL  215 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555655555555666666666655555555555555555444444444444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.53  E-value=14  Score=35.38  Aligned_cols=14  Identities=36%  Similarity=0.456  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHH
Q 037696          308 EALKKEIERLRQVY  321 (363)
Q Consensus       308 E~LkkEIerLRql~  321 (363)
                      -.|..||...|.++
T Consensus       293 ~~Ld~EIatYR~LL  306 (312)
T PF00038_consen  293 LALDAEIATYRKLL  306 (312)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHH
Confidence            34455555555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK00736 hypothetical protein; Provisional

Probab=90.51  E-value=1.9  Score=34.07  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDH  277 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~q  277 (363)
                      .+|.+||.++..++.-+..|...|..-.+
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~   33 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWK   33 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778888887777766666655554443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=90.41  E-value=2.1  Score=42.80  Aligned_cols=44  Identities=23%  Similarity=0.188  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696          267 ALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       267 ~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq  324 (363)
                      +=+.+-+.|.-++..|+.+|.+||.|+..|              .+||++||+++-..
T Consensus       245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~l--------------erEI~ylKqli~e~  288 (294)
T KOG4571|consen  245 KKRAEKEALLGELEGLEKRNEELKDQASEL--------------EREIRYLKQLILEV  288 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence            344555667778888899999999988775              56777777776543

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.41  E-value=13  Score=35.27  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA  297 (363)
Q Consensus       254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~  297 (363)
                      |..++..|..|...|...+..+......+..+-..|++++..+.
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK04406 hypothetical protein; Provisional

Probab=90.41  E-value=1.8  Score=34.97  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 037696          253 ELERSVTTLQTEVSALSPRVAFL  275 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L  275 (363)
                      .||.++..|+...+.+...+..|
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~L   30 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEEL   30 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444433333333

>PRK09039 hypothetical protein; Validated

Probab=90.18  E-value=7.5  Score=39.02  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE  315 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe  315 (363)
                      ..|+.++..++.+.++...+|..|+++...|..+...|...|...+....-..+..+.|+.+|+
T Consensus       119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555555555555555554443333333344444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=90.07  E-value=10  Score=41.84  Aligned_cols=13  Identities=31%  Similarity=0.585  Sum_probs=7.3

Q ss_pred             CCCCCCCc-ccccc
Q 037696           13 HNWSSFPY-QRMSF   25 (363)
Q Consensus        13 ~~w~~~~~-~~~~~   25 (363)
                      .+|=+|.+ ..+++
T Consensus         8 ~nf~s~~~~~~i~f   21 (1164)
T TIGR02169         8 ENFKSFGKKKVIPF   21 (1164)
T ss_pred             eCeeeECCeeEEee
Confidence            36777763 44543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.02  E-value=2.1  Score=35.44  Aligned_cols=46  Identities=28%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      |.=|..+|..|+.+|..|..++..+......|..||..||++....
T Consensus        20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W   65 (79)
T PRK15422         20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW   65 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666666666777777776665554

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=89.90  E-value=2.9  Score=35.38  Aligned_cols=66  Identities=24%  Similarity=0.375  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          256 RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ..+..+..+...+..++..++.++..+...|++|-.+|..|......... .+.+..+|..+..-+.
T Consensus         3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk   68 (106)
T PF05837_consen    3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELK   68 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHH
Confidence            45667777888888888888888888888888888888888776544443 3455555655555554

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=89.82  E-value=7.1  Score=36.73  Aligned_cols=77  Identities=21%  Similarity=0.252  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRL----ILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~----~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq  324 (363)
                      .|...||..+..|+.+...++.++..+..++.    ....+...|..+-..+-....-.+..++.|+.||.+||....++
T Consensus       136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~  215 (221)
T PF05700_consen  136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL  215 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999999999998865443    23334456777776666665556667788999999999877654


Q ss_pred             h
Q 037696          325 N  325 (363)
Q Consensus       325 ~  325 (363)
                      .
T Consensus       216 ~  216 (221)
T PF05700_consen  216 K  216 (221)
T ss_pred             h
Confidence            3

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.76  E-value=2.5  Score=37.67  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Q 037696          247 KLQYISELERSVTTLQTEVSALSPRV--AFLDHQRLILNVDNSALKQRIAALAQDK-IFKDAHQEALKKEIERLRQVY  321 (363)
Q Consensus       247 KkqyIeELE~kV~~Lq~ENs~Ls~el--a~L~qq~~~L~~EN~~LKqrL~~L~qe~-~~KeA~~E~LkkEIerLRql~  321 (363)
                      .+..+.+|+..+..|+.|...|...+  ..|......|..|+..|..+|..|.... .+.....+.+.++...++..+
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w  161 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW  161 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666666666554  4567788888999999999999887633 233445555666665555444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.69  E-value=9.7  Score=39.16  Aligned_cols=6  Identities=17%  Similarity=0.567  Sum_probs=3.2

Q ss_pred             cccccc
Q 037696          115 TMNNIM  120 (363)
Q Consensus       115 ~~~~~~  120 (363)
                      .|++++
T Consensus       129 ~f~~~v  134 (562)
T PHA02562        129 SFKQIV  134 (562)
T ss_pred             HHhHHh
Confidence            455554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=89.68  E-value=5.4  Score=35.48  Aligned_cols=47  Identities=19%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .+++|+.+++.|+.++..+..+|..|.+++..|..+-..|..+|..+
T Consensus        15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~   61 (143)
T PF12718_consen   15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA   61 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555554444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=89.65  E-value=5.1  Score=43.94  Aligned_cols=69  Identities=20%  Similarity=0.351  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD---AHQEALKKEIERLRQ  319 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke---A~~E~LkkEIerLRq  319 (363)
                      +..|..++..|+.+...|..++..+.+.+.....++..+..+|..+...+.-+.   .++..|.-+|..||.
T Consensus       243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG  314 (670)
T KOG0239|consen  243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG  314 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            777888888888888888888888888888888888888888888877766666   555566666666654

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=89.58  E-value=9.8  Score=35.26  Aligned_cols=41  Identities=27%  Similarity=0.315  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ  291 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq  291 (363)
                      ..+|+.++..|+.++..|..++..|..++..+...+.++++
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~  162 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ  162 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777777777666666655555444

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=89.55  E-value=5.9  Score=42.03  Aligned_cols=19  Identities=32%  Similarity=0.364  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 037696          306 HQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       306 ~~E~LkkEIerLRql~~qq  324 (363)
                      ..+.|+.|+++|+.++.+-
T Consensus       117 ~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752       117 EIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4466777777776666543

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.31  E-value=9.4  Score=42.14  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQR  292 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr  292 (363)
                      +-+..+..+|+.|...|+.++...++++..|+.|.++|+..
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666778888888888888888888888888877777664

; GO: 0016021 integral to membrane

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=89.27  E-value=5.6  Score=37.87  Aligned_cols=45  Identities=24%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037696          277 HQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN  325 (363)
Q Consensus       277 qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~  325 (363)
                      ..+..|..||.+||+++..|+.+.    +..+.+++|.++||.++....
T Consensus        69 ~~~~~l~~en~~L~~e~~~l~~~~----~~~~~l~~en~~L~~lL~~~~  113 (276)
T PRK13922         69 ASLFDLREENEELKKELLELESRL----QELEQLEAENARLRELLNLKE  113 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcc
Confidence            445677788888888888876643    223578899999999988543

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=89.17  E-value=7.8  Score=35.92  Aligned_cols=79  Identities=18%  Similarity=0.132  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696          240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ  319 (363)
Q Consensus       240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq  319 (363)
                      .+..-.+....+.+|+.++..+......= .+-..+.+++..|..++..|+.+|..+..   .-....+.+++++..++.
T Consensus        74 l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~~~  149 (188)
T PF03962_consen   74 LQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSE---NDPEKIEKLKEEIKIAKE  149 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence            33333344444455555555443322211 12222334444555555555555553322   122345677777777776


Q ss_pred             HHh
Q 037696          320 VYH  322 (363)
Q Consensus       320 l~~  322 (363)
                      .+.
T Consensus       150 ~an  152 (188)
T PF03962_consen  150 AAN  152 (188)
T ss_pred             HHH
Confidence            655

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=89.16  E-value=7.3  Score=41.20  Aligned_cols=73  Identities=23%  Similarity=0.194  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI---------------------FKDAHQE  308 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~---------------------~KeA~~E  308 (363)
                      .++.|+.++++|..||.+|+..++.|.-.+..|..|-+.+-++|..+..+..                     ....+.|
T Consensus       298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie  377 (502)
T KOG0982|consen  298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE  377 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3567778899999999999999999988888887777666666665543211                     1113567


Q ss_pred             HHHHHHHHHHHHHh
Q 037696          309 ALKKEIERLRQVYH  322 (363)
Q Consensus       309 ~LkkEIerLRql~~  322 (363)
                      .|.+|+++||..-.
T Consensus       378 elrkelehlr~~kl  391 (502)
T KOG0982|consen  378 ELRKELEHLRRRKL  391 (502)
T ss_pred             HHHHHHHHHHHHHH
Confidence            78888888876544

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=89.14  E-value=8.9  Score=39.52  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      =+|-+.++.-||.-+..++.||..|..++..+.+++.+.+.|+..|..+|++.
T Consensus       122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            34556666777777777777888888888888877777777777776666543

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=89.10  E-value=2.9  Score=41.87  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      |-+.++..=+.|+.+|+.+|..++
T Consensus        79 es~~~l~dRetEI~eLksQL~RMr  102 (305)
T PF15290_consen   79 ESENRLHDRETEIDELKSQLARMR  102 (305)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344444444555555555555544

>TIGR00219 mreC rod shape-determining protein MreC

Probab=89.04  E-value=2.1  Score=41.88  Aligned_cols=44  Identities=25%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037696          279 RLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN  325 (363)
Q Consensus       279 ~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~  325 (363)
                      ...|..||.+||.++..|..++..   ..+.|++|.++||.++....
T Consensus        68 ~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~~  111 (283)
T TIGR00219        68 VNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSPL  111 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcc
Confidence            345667888888888777444322   22458999999999998643

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=88.87  E-value=3  Score=36.15  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      +|=.+|..|+.....|..+++.|.++...|..||..|+..-.
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~   46 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEND   46 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666665333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.86  E-value=10  Score=34.01  Aligned_cols=12  Identities=33%  Similarity=0.684  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 037696          309 ALKKEIERLRQV  320 (363)
Q Consensus       309 ~LkkEIerLRql  320 (363)
                      .++.++.+++..
T Consensus       162 ~~~~~~~~~~~~  173 (191)
T PF04156_consen  162 ELRSQLERLQEN  173 (191)
T ss_pred             HHHHHHHHHHHH
Confidence            333444444333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.75  E-value=18  Score=35.74  Aligned_cols=26  Identities=27%  Similarity=0.540  Sum_probs=17.1

Q ss_pred             CCCCChhhhhhccccccc---------cccccCCC
Q 037696           58 HNQPHWVDEFLDFSSVRR---------GAHRRSIS   83 (363)
Q Consensus        58 ~~~psW~DefL~fs~~RR---------G~HRRS~S   83 (363)
                      +..|-=|.+||+....+=         ...||+..
T Consensus        10 ~~~~isL~~FL~~~~I~F~dDl~~~~~~~kr~~~~   44 (325)
T PF08317_consen   10 DYEPISLQDFLNMTGIRFYDDLEMELTTTKRRSTT   44 (325)
T ss_pred             CCCCcCHHHHHHHhCceeCCCccccccccCCcccC
Confidence            345666999999865543         34677664

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=88.63  E-value=4.7  Score=44.70  Aligned_cols=49  Identities=24%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      .+.||.+...|+.|..+++.+-..|.+.+..|+.||-.|..+|..|.+.
T Consensus        71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s  119 (717)
T PF09730_consen   71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS  119 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            4566666666666666666666667777777777777777777777653

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=88.42  E-value=2.8  Score=35.99  Aligned_cols=44  Identities=23%  Similarity=0.207  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      +|=.++..|+.....|..++..|..+...|..||..|+.+...|
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L   48 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL   48 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666666666666666666666666544443

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=88.38  E-value=16  Score=39.95  Aligned_cols=29  Identities=24%  Similarity=0.357  Sum_probs=18.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          236 NRQSAQRSRVRKLQYISELERSVTTLQTE  264 (363)
Q Consensus       236 NRESAqRSR~RKkqyIeELE~kV~~Lq~E  264 (363)
                      |.+.--+--..+...|.+||.++..++.+
T Consensus       109 ~ne~Ls~L~~EqEerL~ELE~~le~~~e~  137 (617)
T PF15070_consen  109 NNEQLSRLNQEQEERLAELEEELERLQEQ  137 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333346778888888888777654

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.34  E-value=5.6  Score=39.08  Aligned_cols=47  Identities=26%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPR-------VAFLDHQRLILNVDNSALKQRIAALA  297 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~e-------la~L~qq~~~L~~EN~~LKqrL~~L~  297 (363)
                      .++|..+...++.|+..|..+       +..++.++..|..||..|...+..|.
T Consensus       137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            344444455555544444444       44444455555555555555444443

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=88.33  E-value=11  Score=30.26  Aligned_cols=64  Identities=25%  Similarity=0.313  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      .+=..++..|..|...|+.+.-.+......|...+..+...+..+..       -.+.+..++..|+..+.
T Consensus         8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~-------~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen    8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK-------KLEELEKELESLEERLK   71 (74)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence            34455666777777777766666666555566666665555555543       33566777777776554

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=88.26  E-value=13  Score=30.58  Aligned_cols=82  Identities=20%  Similarity=0.232  Sum_probs=36.5

Q ss_pred             HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHH
Q 037696          235 ANRQSAQRSRVRKL------QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNV---DNSALKQRIAALAQDKIFKDA  305 (363)
Q Consensus       235 sNRESAqRSR~RKk------qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~---EN~~LKqrL~~L~qe~~~KeA  305 (363)
                      .|.+..+.+-.++.      ..|-+|..+...|..+...|..+-..+..+...+..   +-..|+.++..+..+..-.+.
T Consensus         9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~   88 (108)
T PF02403_consen    9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE   88 (108)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            37776666655553      334444444444555554444444444444333332   223344444444333322233


Q ss_pred             HHHHHHHHHHH
Q 037696          306 HQEALKKEIER  316 (363)
Q Consensus       306 ~~E~LkkEIer  316 (363)
                      ....+..++..
T Consensus        89 ~~~~~e~~l~~   99 (108)
T PF02403_consen   89 QLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.06  E-value=5.1  Score=39.57  Aligned_cols=9  Identities=33%  Similarity=0.604  Sum_probs=3.5

Q ss_pred             HHHHHHHHH
Q 037696          313 EIERLRQVY  321 (363)
Q Consensus       313 EIerLRql~  321 (363)
                      ||.+|+..+
T Consensus       277 Ev~~Lk~~~  285 (325)
T PF08317_consen  277 EVKRLKAKV  285 (325)
T ss_pred             HHHHHHHHH
Confidence            344444433

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=88.03  E-value=3.5  Score=40.17  Aligned_cols=65  Identities=22%  Similarity=0.347  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696          246 RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq  324 (363)
                      +=.+|.+..++....++..-..-+.+...+.++...|+.||..|+.++.              .|++|+..||.++.+.
T Consensus       191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~--------------~l~~el~~~~~~~~~~  255 (269)
T KOG3119|consen  191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE--------------QLKKELATLRRLFLQL  255 (269)
T ss_pred             CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhh
Confidence            3356777777776666665555555556666677777777777777554              4567778888877753

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.58  E-value=4.8  Score=35.90  Aligned_cols=43  Identities=30%  Similarity=0.487  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      |.+|..++..|..++..|..++..|....     -|.+|+..+..|..
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~  123 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEE  123 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Confidence            66777777777777777776666665433     24445555555544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=87.53  E-value=20  Score=33.60  Aligned_cols=49  Identities=22%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      ..+++.+++-+.-+.+=..-+..+..++.++..|+-|+..|..++..|.
T Consensus        72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle  120 (201)
T PF13851_consen   72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE  120 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555554444444444444444444444444444444444333333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.45  E-value=7.1  Score=40.20  Aligned_cols=83  Identities=19%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 037696          229 RVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRV--------------AFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       229 R~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~el--------------a~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      |+|.+.-|-|--+.-|.-    +++-..+.++|+..|..|..++              ..|+.-...+..||..|..+|.
T Consensus        76 kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~  151 (401)
T PF06785_consen   76 KIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD  151 (401)
T ss_pred             HHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence            555566665655544432    2233333445555555555444              3455566778889999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHH
Q 037696          295 ALAQDKIFKDAHQEALKKEIE  315 (363)
Q Consensus       295 ~L~qe~~~KeA~~E~LkkEIe  315 (363)
                      ++.+++.-|+.+...|-+|+.
T Consensus       152 ~l~~e~~Ekeeesq~LnrELa  172 (401)
T PF06785_consen  152 ALQQECGEKEEESQTLNRELA  172 (401)
T ss_pred             HHHHHHhHhHHHHHHHHHHHH
Confidence            999988777766666655544

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=87.38  E-value=9  Score=35.58  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696          247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA  305 (363)
Q Consensus       247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA  305 (363)
                      -...++|=..+...|..-|.-|+.++......+..|..++..|...+..+..+...|+.
T Consensus        65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~  123 (182)
T PF15035_consen   65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEA  123 (182)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777888888888888888888888888888888888888888777776664

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=87.26  E-value=5.2  Score=40.27  Aligned_cols=64  Identities=27%  Similarity=0.430  Sum_probs=48.4

Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          252 SELERSVT---TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       252 eELE~kV~---~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ++|.++..   ..+.|+..|..++..|++++..+..||.+|.+.|...      |++. ..|..|+..|+..|.
T Consensus       220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s------ke~Q-~~L~aEL~elqdkY~  286 (306)
T PF04849_consen  220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS------KESQ-RQLQAELQELQDKYA  286 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHH
Confidence            44555444   3567888899999999999999999999999998875      3333 457777777777775

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=87.23  E-value=7.4  Score=32.94  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          239 SAQRSRVRKL-QYISELERSVTTLQTEVSAL--SPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       239 SAqRSR~RKk-qyIeELE~kV~~Lq~ENs~L--s~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .|.+.+..+. +.+.+++.++..++.+...|  ...+..|+-....+..+-+.|..+|..+..
T Consensus        31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~   93 (106)
T PF10805_consen   31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH   93 (106)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4444444443 34444456666666655555  555555555555555666666666665544

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=87.01  E-value=10  Score=43.77  Aligned_cols=89  Identities=19%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             HHHHhHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037696          232 RILANRQSAQRSRVR----KLQY------ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI  301 (363)
Q Consensus       232 R~LsNRESAqRSR~R----Kkqy------IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~  301 (363)
                      -+|+++..|.|.+.=    +..|      ..+...++++|+.|...+..++..+.+.+......+..|+.++..+...+.
T Consensus       414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~  493 (1041)
T KOG0243|consen  414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ  493 (1041)
T ss_pred             HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            346677777775421    1222      234445566666666667777777777777666677777777777776666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 037696          302 FKDAHQEALKKEIERLRQV  320 (363)
Q Consensus       302 ~KeA~~E~LkkEIerLRql  320 (363)
                      .+.-+.+.+++|+..++..
T Consensus       494 ~~~~el~~~~ee~~~~~~~  512 (1041)
T KOG0243|consen  494 NKNKELESLKEELQQAKAT  512 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666677776666554

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=86.82  E-value=0.036  Score=56.22  Aligned_cols=55  Identities=33%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 037696          221 GDTIIDPKRVKRILANRQSAQR---SRVRKLQYISELERSVTTLQ-TEVSALSPRVAFL  275 (363)
Q Consensus       221 ~~~~~D~KR~RR~LsNRESAqR---SR~RKkqyIeELE~kV~~Lq-~ENs~Ls~ela~L  275 (363)
                      .....+.|++.|+.+|+.+|.+   +|.||+.+...|..+|+.|+ .++..|..++..|
T Consensus       147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L  205 (395)
T KOG1414|consen  147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL  205 (395)
T ss_pred             CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence            3466789999999999999999   99999999999999999999 7666655554444

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=86.81  E-value=7.4  Score=39.20  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=10.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696          292 RIAALAQDKIFKDAHQEALKKEIERL  317 (363)
Q Consensus       292 rL~~L~qe~~~KeA~~E~LkkEIerL  317 (363)
                      +|..|..++..|--.+....+||.+|
T Consensus       214 qia~LseELa~k~Ee~~rQQEEIt~L  239 (306)
T PF04849_consen  214 QIASLSEELARKTEENRRQQEEITSL  239 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344433333333333333444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.79  E-value=16  Score=39.57  Aligned_cols=44  Identities=27%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696          277 HQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV  320 (363)
Q Consensus       277 qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql  320 (363)
                      ..+..|++|...+|.++..|+.++.--.+++..|..+|.++|..
T Consensus       148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~  191 (546)
T KOG0977|consen  148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ  191 (546)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            33344555555555555555554444344445555555555543

>PRK00846 hypothetical protein; Provisional

Probab=86.67  E-value=4.7  Score=33.06  Aligned_cols=7  Identities=29%  Similarity=0.638  Sum_probs=3.3

Q ss_pred             CCCCCCC
Q 037696          342 PPQQPPS  348 (363)
Q Consensus       342 ~v~~~~~  348 (363)
                      .-+||||
T Consensus        70 dE~PPPH   76 (77)
T PRK00846         70 DEPPPPH   76 (77)
T ss_pred             CCCCcCC
Confidence            3445554

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.54  E-value=15  Score=39.73  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          239 SAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       239 SAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .+.+.|..=..-+.+++..+..|++|...+..++..|+.+...|..||..|...|+.+..
T Consensus       131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            333333333344555666777788888888888888888888888888888888887765

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.54  E-value=10  Score=37.61  Aligned_cols=55  Identities=18%  Similarity=0.247  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      ..+..-+.+|+..+..++.+...|..++..+..+...+..++..+++.|..|.++
T Consensus        34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e   88 (265)
T COG3883          34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE   88 (265)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455567788888888888888888888888888888888888777777777654

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.70  E-value=22  Score=36.09  Aligned_cols=54  Identities=20%  Similarity=0.223  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696          273 AFLDHQRLILNVDNSALKQRIAAL----------------AQDKIFKDAHQEALKKEIERLRQVYHQQNI  326 (363)
Q Consensus       273 a~L~qq~~~L~~EN~~LKqrL~~L----------------~qe~~~KeA~~E~LkkEIerLRql~~qq~~  326 (363)
                      ..|..+...|..|++.|..+|..-                .....-..++...|+.||.|||+.+.....
T Consensus       181 N~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~  250 (310)
T PF09755_consen  181 NRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQ  250 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778888888888887630                111233456777899999999988875444

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=85.54  E-value=13  Score=34.63  Aligned_cols=46  Identities=20%  Similarity=0.280  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          269 SPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY  321 (363)
Q Consensus       269 s~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~  321 (363)
                      ..++..=++++..|..-|..||.+|.....       .|+.|..||.+|+.-+
T Consensus        66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~-------~N~~L~~dl~klt~~~  111 (182)
T PF15035_consen   66 LIRLEEEQQRSEELAQVNALLREQLEQARK-------ANEALQEDLQKLTQDW  111 (182)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            333334455666666777777777666533       4455555555554433

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=85.51  E-value=4.3  Score=34.46  Aligned_cols=34  Identities=21%  Similarity=0.150  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          265 VSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       265 Ns~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      ...|..++..+++++..|..+|..|+.+|..|..
T Consensus        29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3445555555555556666777777787777755

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.46  E-value=15  Score=32.96  Aligned_cols=41  Identities=17%  Similarity=0.238  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          256 RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .++.+++..+..+..++..+......+..+.+.++.++..+
T Consensus        95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l  135 (191)
T PF04156_consen   95 EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSL  135 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=85.25  E-value=22  Score=42.50  Aligned_cols=13  Identities=23%  Similarity=0.608  Sum_probs=9.1

Q ss_pred             CCCCCCCcccccc
Q 037696           13 HNWSSFPYQRMSF   25 (363)
Q Consensus        13 ~~w~~~~~~~~~~   25 (363)
                      .||-.|.+..+++
T Consensus        13 ~N~~~~~~~~~~f   25 (1486)
T PRK04863         13 VNWNGFFARTFDL   25 (1486)
T ss_pred             ecccCccceEEEe
Confidence            4888888766644

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=85.05  E-value=14  Score=33.24  Aligned_cols=72  Identities=19%  Similarity=0.175  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ  323 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q  323 (363)
                      +.....+...+..+..+..++..|......-...-..|+..+........-.+...+.|+.|-+.||.-+..
T Consensus        29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t  100 (135)
T TIGR03495        29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT  100 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence            334444555666666667777777666666666777788888877777777777888999999999987774

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=85.01  E-value=8.1  Score=35.01  Aligned_cols=47  Identities=21%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLD-HQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~-qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .+||...-.++...++|+.++..++ .+...|..++..|+.++..|.+
T Consensus        47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~   94 (177)
T PF07798_consen   47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ   94 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555556666666666665543 3445556666666666666554

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=84.97  E-value=20  Score=29.41  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK-IFKDAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~-~~KeA~~E~LkkEIerLRql~~qq  324 (363)
                      ..++.+..+...+..+...+..+-..++.++..=..|...+|+.|-.|+... .+|    +...+||.+||.-+.+.
T Consensus         4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----~~YEeEI~rLr~eLe~r   76 (79)
T PF08581_consen    4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----QQYEEEIARLRRELEQR   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence            4466667777777777777777888888888888899999999999998754 223    35679999999877643

; PDB: 3VP9_B 3VP8_B.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=84.97  E-value=28  Score=32.60  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       284 ~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ..|..++.++.....-..--......|..||.+|++.+.
T Consensus       150 L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk  188 (194)
T PF15619_consen  150 LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK  188 (194)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444333222223355677888888887654

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=84.91  E-value=12  Score=37.57  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=49.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          229 RVKRILANRQSAQRSRVRKLQYISELE--------------RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       229 R~RR~LsNRESAqRSR~RKkqyIeELE--------------~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      |+.-|..+-+--++-|.-|+=.|+.||              .++..|+.||..|......|+.....|..+-..=..+|.
T Consensus        19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~   98 (307)
T PF10481_consen   19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN   98 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence            444444555555555555555555555              344445555555555555555555555555444444555


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          295 ALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       295 ~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      -|+.++.--....|.|..||.+++.-+.
T Consensus        99 ~lEgQl~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   99 FLEGQLNSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555443333355666666666665544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF15058 Speriolin_N: Speriolin N terminus

Probab=84.79  E-value=1.2  Score=42.20  Aligned_cols=45  Identities=27%  Similarity=0.234  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037696          272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIER  316 (363)
Q Consensus       272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIer  316 (363)
                      .+-|.+++..|+.||.+||.++..|.....+|.|+-|....-..|
T Consensus         7 yeGlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r   51 (200)
T PF15058_consen    7 YEGLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQR   51 (200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            445677777788888888888888877777777765555544433

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=84.76  E-value=13  Score=39.29  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------
Q 037696          245 VRKLQYISELERSVTT--------------LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF--------  302 (363)
Q Consensus       245 ~RKkqyIeELE~kV~~--------------Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~--------  302 (363)
                      .=|..|-+|||+++..              ...+...+..++..|.+++..--.||..|.+.+.+-++.+.-        
T Consensus       389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL  468 (593)
T KOG4807|consen  389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL  468 (593)
T ss_pred             HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3588999999987653              345677788889999999988888998888887654432211        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhhh
Q 037696          303 ---KDAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       303 ---KeA~~E~LkkEIerLRql~~qq  324 (363)
                         ...++-.|..||.+||-++.-+
T Consensus       469 naHNQELnnRLaaEItrLRtlltgd  493 (593)
T KOG4807|consen  469 NAHNQELNNRLAAEITRLRTLLTGD  493 (593)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccC
Confidence               1124566789999999988743

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=84.67  E-value=19  Score=36.20  Aligned_cols=55  Identities=25%  Similarity=0.266  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      |+.-...|...+..-+.+...|+......|.+|..|+++       ...++.|++|.++...
T Consensus        79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqe-------lkr~KsELErsQ~~~~  133 (307)
T PF10481_consen   79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQE-------LKRCKSELERSQQAAS  133 (307)
T ss_pred             HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhc
Confidence            344444455555555566666666666777777776663       3456677777666554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR00219 mreC rod shape-determining protein MreC

Probab=84.64  E-value=2.2  Score=41.66  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 037696          257 SVTTLQTEVSALSPRVAFLDHQRL----ILNVDNSALKQRIA  294 (363)
Q Consensus       257 kV~~Lq~ENs~Ls~ela~L~qq~~----~L~~EN~~LKqrL~  294 (363)
                      .+..|..||.+|+.++..|.++..    .|..||..||+-|.
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~  108 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN  108 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445567788888877766633333    36777777777443

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.63  E-value=11  Score=41.22  Aligned_cols=74  Identities=20%  Similarity=0.211  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYI----SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyI----eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .|.|++|..+.|-++-..+-.++..-+    ..+|.+--.|+.|..++.-+-+.|.+.+..|+.||-.|..++..|.+
T Consensus       114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~  191 (772)
T KOG0999|consen  114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ  191 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence            466777777766655443333332222    12333333444555555555555555555555555555555555544

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=84.35  E-value=12  Score=40.31  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA  305 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA  305 (363)
                      +.|..+..+...++.||+.|..++..++++...+..|+.+|.+-|.+..+...--.+
T Consensus       219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a  275 (596)
T KOG4360|consen  219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA  275 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            345556666777889999999999999999999999999999999887665433333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=84.33  E-value=31  Score=31.11  Aligned_cols=14  Identities=21%  Similarity=0.261  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHH
Q 037696          248 LQYISELERSVTTL  261 (363)
Q Consensus       248 kqyIeELE~kV~~L  261 (363)
                      +.+|..||+.+...
T Consensus        23 e~~v~~LEreLe~~   36 (140)
T PF10473_consen   23 EDHVESLERELEMS   36 (140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34555555555443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.13  E-value=55  Score=33.76  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA  297 (363)
Q Consensus       244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~  297 (363)
                      +......+.+|+.++..+......+..+...|+.+...|..++..+..+|..+.
T Consensus       332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~  385 (562)
T PHA02562        332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ  385 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence            333344444444444444444433333334444444444444443433443333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.03  E-value=9.3  Score=37.63  Aligned_cols=72  Identities=14%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      +.+|......|.....++..+...|...+..|..|-.+++.+|..|+.+.-.-+.....|..|+.+|+..+.
T Consensus       130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~  201 (290)
T COG4026         130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD  201 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            345556666666666666666666767777777777777777777666554433333444456666665544

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=83.99  E-value=19  Score=34.74  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      ||.+...+..+-..|..+++........+..+..+|+.+.+.+..
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~  193 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD  193 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            333344444444444444444444444445555555555554443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.97  E-value=39  Score=31.99  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .++++..+...|..+...|..++..|+..+..|...-..+++++..|.+
T Consensus        43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~   91 (251)
T PF11932_consen   43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ   91 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555444444444444444444444444444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=83.87  E-value=5.4  Score=34.98  Aligned_cols=46  Identities=20%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      +=.+|..|+.....|..++..|.++...|..||..|+-+...|...
T Consensus         6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R   51 (114)
T COG4467           6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER   51 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence            4456777777778888888888888888888888777766666543

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=83.74  E-value=12  Score=37.73  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI  293 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL  293 (363)
                      ++|..++..|+.+|..|..++.....++..|..||+.||+.-
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~s   64 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREAS   64 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555433

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=83.59  E-value=20  Score=33.20  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696          258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ  319 (363)
Q Consensus       258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq  319 (363)
                      ...|..++..|..++..|..+...|......+..+.....      .........||+.|+.
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~------~~~~k~~~~ei~~lk~  177 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR------QEEEKKHQEEIDFLKK  177 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555444444444443322      1222334455555554

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PRK12704 phosphodiesterase; Provisional

Probab=83.54  E-value=19  Score=38.33  Aligned_cols=19  Identities=21%  Similarity=0.099  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 037696          278 QRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       278 q~~~L~~EN~~LKqrL~~L  296 (363)
                      ++..+..+...--++++.|
T Consensus       132 ~~~~~~~~~~~~l~~~a~l  150 (520)
T PRK12704        132 ELEELIEEQLQELERISGL  150 (520)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            3333333333333333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.26  E-value=15  Score=41.75  Aligned_cols=15  Identities=33%  Similarity=0.180  Sum_probs=8.7

Q ss_pred             CCCCCCCCCCCCCCCC
Q 037696          153 ASSSNPSTPSDQNSNN  168 (363)
Q Consensus       153 ~~~~~~s~~~~~~~~~  168 (363)
                      .+.+..+++| .++++
T Consensus       276 Vpp~~r~~rs-~~sis  290 (1118)
T KOG1029|consen  276 VPPSFRSSRS-ANSIS  290 (1118)
T ss_pred             cCcccccccC-CCCcc
Confidence            4566666666 45554

>PF15294 Leu_zip: Leucine zipper

Probab=83.25  E-value=7.6  Score=38.65  Aligned_cols=45  Identities=24%  Similarity=0.324  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      |...+..|+.||..|+.++..++.++.....|+..|..+|..|..
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667788899999999999999999999999999999999988866

>PRK02224 chromosome segregation protein; Provisional

Probab=83.21  E-value=23  Score=38.88  Aligned_cols=8  Identities=13%  Similarity=0.181  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 037696          288 ALKQRIAA  295 (363)
Q Consensus       288 ~LKqrL~~  295 (363)
                      .|+.++..
T Consensus       631 ~~r~~i~~  638 (880)
T PRK02224        631 EKRERKRE  638 (880)
T ss_pred             HHHHHHHH
Confidence            33333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.15  E-value=36  Score=35.85  Aligned_cols=71  Identities=20%  Similarity=0.267  Sum_probs=40.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      |+++.+.++=+.-.++....++....|+..++.|+.++..+..++.........+...+..+..+|..|..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~  108 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV  108 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            66666655555555555555566666777776666666666666655554444444444444444444433

>TIGR02231 conserved hypothetical protein

Probab=82.67  E-value=19  Score=37.55  Aligned_cols=17  Identities=18%  Similarity=0.356  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 037696          306 HQEALKKEIERLRQVYH  322 (363)
Q Consensus       306 ~~E~LkkEIerLRql~~  322 (363)
                      ..+.++++|..|+..+.
T Consensus       153 ~~~~~~~~l~~l~~~l~  169 (525)
T TIGR02231       153 RIRELEKQLSELQNELN  169 (525)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555666666655443

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=82.67  E-value=7.6  Score=42.12  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          264 EVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       264 ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      ....|..+++.|.+++..|..||..||+||..|..+
T Consensus       303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E  338 (655)
T KOG4343|consen  303 YMLGLEARLQALLSENEQLKKENATLKRQLDELVSE  338 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            345688999999999999999999999999998764

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=82.60  E-value=25  Score=40.86  Aligned_cols=94  Identities=18%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037696          224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFK  303 (363)
Q Consensus       224 ~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~K  303 (363)
                      +.-.+.+|-.|.||.--..--+++-.-++++-.+.-.|+.++..|+.++..|++.+..+...+.+|...-.       .-
T Consensus       369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K-------~L  441 (1195)
T KOG4643|consen  369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEK-------KL  441 (1195)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence            33456788899999888888888888888888888888888888888888887766655444443333222       22


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 037696          304 DAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       304 eA~~E~LkkEIerLRql~~qq  324 (363)
                      ..+++.|..|+...+..+..+
T Consensus       442 ~~E~ekl~~e~~t~~~s~~rq  462 (1195)
T KOG4643|consen  442 QFELEKLLEETSTVTRSLSRQ  462 (1195)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH
Confidence            234566667776666666655

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.44  E-value=19  Score=39.13  Aligned_cols=46  Identities=17%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      .|+..++.+-..+......|..++...+.++..|..+|..||.+|.
T Consensus       280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555556666666666666666666666666665554

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=82.38  E-value=4.1  Score=31.23  Aligned_cols=48  Identities=23%  Similarity=0.279  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          246 RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      ||+..|+|||.+.+.-+ |...+.  -......+..|..||..|+.+|..+
T Consensus         1 kw~~Rl~ELe~klkaer-E~R~~d--~~~a~~rl~~l~~EN~~Lr~eL~~~   48 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER-EARSLD--RSAARKRLSKLEGENRLLRAELERL   48 (52)
T ss_pred             CHHHHHHHHHHHHHHhH-HhccCC--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788889988877543 211111  1223344445566676666666544

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=82.35  E-value=9.5  Score=36.84  Aligned_cols=46  Identities=11%  Similarity=0.166  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA  295 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~  295 (363)
                      -+-+|..++..|+.|+..|+.+++.+.+++..+....+.|-++|..
T Consensus        55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~  100 (263)
T PRK10803         55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS  100 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478888999999999999998888888777777666666665554

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=82.27  E-value=10  Score=36.19  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 037696          260 TLQTEVSALSPRVAFLDHQRL---ILNVDNSALKQRI  293 (363)
Q Consensus       260 ~Lq~ENs~Ls~ela~L~qq~~---~L~~EN~~LKqrL  293 (363)
                      .|..||.+|+.++..|+.+..   .|..||..||.-|
T Consensus        73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL  109 (276)
T PRK13922         73 DLREENEELKKELLELESRLQELEQLEAENARLRELL  109 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444443333322   4556666666544

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.25  E-value=42  Score=32.76  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      .++...+..|...+..++.....|..++..|......|..+-..|+.++..++..
T Consensus        85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~  139 (239)
T COG1579          85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN  139 (239)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455667777776666666677777776666666666666666666665543

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=82.10  E-value=39  Score=39.06  Aligned_cols=74  Identities=23%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA-----FLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela-----~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      |-...-|=|.||+--+-+++|.-+|-+++|.+-..|....+.|..=+.     .+.+-...++.|-.+||+++.....+
T Consensus      1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e 1104 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRME 1104 (1189)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555678999999999999999999999999999998887765433     33344456778888888888765544

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=81.98  E-value=35  Score=30.15  Aligned_cols=59  Identities=20%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696          268 LSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI  326 (363)
Q Consensus       268 Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~  326 (363)
                      |..+-..++......+.|-.+|+.+|+.|+++..-.+.+++.|.+.|.-|-.++.+...
T Consensus         9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~   67 (134)
T PF08232_consen    9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERA   67 (134)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555666666666666666666666666666666666655555554443

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>smart00338 BRLZ basic region leucin zipper

Probab=81.92  E-value=6.5  Score=29.93  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          272 VAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       272 la~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      +..|+.+...|..+|..|+.++..|
T Consensus        28 ~~~Le~~~~~L~~en~~L~~~~~~l   52 (65)
T smart00338       28 IEELERKVEQLEAENERLKKEIERL   52 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555566665555554

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.81  E-value=43  Score=33.34  Aligned_cols=46  Identities=26%  Similarity=0.380  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      +.+++.+++.|+.|...|..++..|+.+...|..|-..|+.++..|
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l   90 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL   90 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=81.78  E-value=19  Score=39.17  Aligned_cols=77  Identities=23%  Similarity=0.307  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 037696          250 YISELERSVTTLQTEVSALSPRVAF----------------------------LDHQRLILNVDNSALKQRIAALAQDK-  300 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~----------------------------L~qq~~~L~~EN~~LKqrL~~L~qe~-  300 (363)
                      .+.+|+..+..|+.++..|..+|..                            -......|..||..|+.+|..|+... 
T Consensus       511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~  590 (722)
T PF05557_consen  511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNS  590 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            4566666666666666666665554                            13556788899999999996554211 


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696          301 ------------------IFKDAHQEALKKEIERLRQVYHQQNI  326 (363)
Q Consensus       301 ------------------~~KeA~~E~LkkEIerLRql~~qq~~  326 (363)
                                        .-..+..+.+.+...||+.+|.....
T Consensus       591 ~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~  634 (722)
T PF05557_consen  591 QPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQ  634 (722)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              11123456677888899998886543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.71  E-value=28  Score=40.43  Aligned_cols=71  Identities=18%  Similarity=0.268  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY  321 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~  321 (363)
                      +.+|+..++.+...+.+-+.++..-++.+..|..|-.+|...+..+.++..-..-..+.|+.|+..|+..+
T Consensus       789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv  859 (1174)
T KOG0933|consen  789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV  859 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555666666666666666665555555555556666665555443

>PRK02119 hypothetical protein; Provisional

Probab=81.59  E-value=13  Score=29.80  Aligned_cols=27  Identities=15%  Similarity=0.242  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDH  277 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~q  277 (363)
                      +..||.++..|+...+.+...+..|..
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~LN~   30 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEELNQ   30 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778887777766666666655543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=81.45  E-value=43  Score=38.70  Aligned_cols=10  Identities=10%  Similarity=0.179  Sum_probs=4.7

Q ss_pred             hhhhcccccc
Q 037696          135 EQLMSMFSDD  144 (363)
Q Consensus       135 ~q~~smf~d~  144 (363)
                      .-+..+|.+.
T Consensus       607 ~~~~~~l~~t  616 (1163)
T COG1196         607 PAVRFVLGDT  616 (1163)
T ss_pred             HHHHHHhCCe
Confidence            3444455544

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=81.24  E-value=18  Score=28.29  Aligned_cols=31  Identities=32%  Similarity=0.355  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRL  280 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~  280 (363)
                      .|++|...|..|...+..|+..+..|.....
T Consensus         4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~   34 (56)
T PF04728_consen    4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ   34 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666666666555555544333

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PRK02224 chromosome segregation protein; Provisional

Probab=81.11  E-value=47  Score=36.51  Aligned_cols=10  Identities=10%  Similarity=-0.007  Sum_probs=4.3

Q ss_pred             ccccccCCCC
Q 037696          116 MNNIMSSSDA  125 (363)
Q Consensus       116 ~~~~~~~~~~  125 (363)
                      |.|++-++.+
T Consensus       129 f~~~~~i~Qg  138 (880)
T PRK02224        129 FVNCAYVRQG  138 (880)
T ss_pred             hcceeEeecc
Confidence            4444444443

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=81.08  E-value=28  Score=35.94  Aligned_cols=69  Identities=23%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDN---SALKQRIAALAQDKIFKDAHQEALKKEIERL  317 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN---~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL  317 (363)
                      ..|-+|..+...|+.+...|..+...+.++...+....   ..|+.++..|..+..-.++..+.+..++..+
T Consensus        28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~   99 (425)
T PRK05431         28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL   99 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555444322111   1344444444443333333444455555443

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=81.08  E-value=7  Score=34.08  Aligned_cols=45  Identities=33%  Similarity=0.380  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      |-.+|-.|+.-...|+.++..+.++...|..||+.|-|-|+.|-.
T Consensus        61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS  105 (120)
T KOG3650|consen   61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence            456777788888889999999999999999999999998887744

>PRK04406 hypothetical protein; Provisional

Probab=80.98  E-value=14  Score=29.84  Aligned_cols=33  Identities=12%  Similarity=0.108  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLI  281 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~  281 (363)
                      ++|.+||.++..++.-+..|...|...+++...
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~   43 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITK   43 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367777777777777777777766665544433

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=80.73  E-value=2.9  Score=32.95  Aligned_cols=30  Identities=33%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          263 TEVSALSPRVAFLDHQRLILNVDNSALKQR  292 (363)
Q Consensus       263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr  292 (363)
                      .|+..|+.++..|..++..|+.||..||+.
T Consensus        14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   14 EEVEVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355566666666666666677777777764

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=80.38  E-value=8.6  Score=43.16  Aligned_cols=59  Identities=24%  Similarity=0.296  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696          260 TLQTEVSALSPRVAFLDHQRLI-------------------LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR  318 (363)
Q Consensus       260 ~Lq~ENs~Ls~ela~L~qq~~~-------------------L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR  318 (363)
                      -|+.||+.|+++|..|.+++.+                   |..=|..|..+|.+....+.+-...+|+|.+.|+.+|
T Consensus       391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~  468 (861)
T PF15254_consen  391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK  468 (861)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence            3566888888888888776643                   4445666667776655544444445556655554433

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=80.26  E-value=46  Score=33.73  Aligned_cols=67  Identities=21%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696          238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD  304 (363)
Q Consensus       238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke  304 (363)
                      ++++|-....+..+.++|.....-+........+-..|++++..|..||--|+++|.........|+
T Consensus       182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke  248 (305)
T PF14915_consen  182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE  248 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888888888889999999888888888888888889999999999999999999987655443333

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.14  E-value=20  Score=32.57  Aligned_cols=39  Identities=33%  Similarity=0.400  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696          282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV  320 (363)
Q Consensus       282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql  320 (363)
                      +..++..++.+++.|..+..-++...+.|++.++.|-.-
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e  190 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE  190 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345666677777777776666777778888887776543

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	5e-10
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	7e-10
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	9e-10
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-07
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	4e-07
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	3e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	4e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           KR  R++ NR++A+ SR +K +Y+  LE  V  L+ +   L   +  L
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKAL 48

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 55.1 bits (132), Expect = 7e-10
 Identities = 23/77 (29%), Positives = 36/77 (46%)

Query: 222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLI 281
           + II  K+ +R L NR  A   RV+++    ELE+    LQ EV  L+   A +  +   
Sbjct: 31  EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDA 90

Query: 282 LNVDNSALKQRIAALAQ 298
           L     AL+     +A+
Sbjct: 91  LRSKYEALQNFARTVAR 107

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 53.1 bits (128), Expect = 9e-10
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNS 287
           KR K +  NR +A RSR ++  ++  LE+    L +    L   V  L ++        +
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE-------VA 53

Query: 288 ALKQRIAA 295
            LKQ + A
Sbjct: 54  QLKQLLLA 61

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLI 281
           D +I  K+ +R L NR  AQ  R +++Q    LE   T L  +V  L   V+ L  +R  
Sbjct: 21  DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER-- 78

Query: 282 LNVDNSALKQRIAALA 297
                 A K +   LA
Sbjct: 79  -----DAYKVKSEKLA 89

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLIL 282
           K  ++ + NR +A +SR RKL+ I+ LE  V TL+ + S L+     L  Q   L
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           DP  +KR   N ++A+RSR RKLQ + +LE  V  L ++   L   VA L
Sbjct: 8   DPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLIL 282
           KR  R   N+ +A + R R+ +    L+     L+ E SAL   +A L  ++  L
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 50/393 (12%), Positives = 103/393 (26%), Gaps = 146/393 (37%)

Query: 48  MTLNNNNNIHHNQPHWVDEFLDFSSVRRGAHRRSISDSVAFLDPPSSLVVVEECRNSNNS 107
                 + +   +  +VD F D   V                D P S++  EE  +   S
Sbjct: 14  HQYQYKDILSVFEDAFVDNF-DCKDV---------------QDMPKSILSKEEIDHIIMS 57

Query: 108 NN-------------NNNNSTMNNIMSSS-DANYCFDRLDDEQLMSMFSDDISVSVPPTA 153
            +             +     +   +      NY F       LMS    +      P+ 
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTE---QRQPSM 107

Query: 154 SSSNPSTPSDQNSNNDEK-----VTAPSDQQQ-QQKQQQQQP-------------K---- 190
            +       D+  N+++      V+      + +Q   + +P             K    
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 191 -------------------------NEPGEV----ESSCKNNEPSSSQTTTHQTPPASNG 221
                                    N P  V    +      +P+ +  + H +      
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 222 DTIIDPKRVKRILANRQSAQRS-----RVRKLQYISELERS----VTTLQTEV----SAL 268
            +I     ++R+L ++   +        V+  +  +    S    +TT   +V    SA 
Sbjct: 228 HSIQA--ELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 269 SPRVAFLDHQR-------------LILNVDNSALKQR-----------IAALAQD----- 299
           +     LDH                 L+     L +            IA   +D     
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 300 ----KIFKDAHQEALKKEIERL-----RQVYHQ 323
                +  D     ++  +  L     R+++ +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 52/413 (12%), Positives = 111/413 (26%), Gaps = 124/413 (30%)

Query: 21  QRMSF----ISSNNNNNNDNNNNNIANAATTMTLNNNNNIHHNQP-----HWVDEFL-DF 70
            +M F    ++  N N+ +     +      +  N  +   H+       H +   L   
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 71  SSVRRGAHRRS--ISDSV-------AFLDPPSSLVVVEECRNSNNSNNNNNNSTMNNIMS 121
              +   +     +  +V       AF +    +++    R    ++  +  +T +  + 
Sbjct: 238 LKSKP--YENCLLVLLNVQNAKAWNAF-NLSCKILLTT--RFKQVTDFLSAATTTHISLD 292

Query: 122 SSDANYCFDRLDDEQLMSMFSDDISVSV---PPTASSSNPSTPS-------D-------- 163
                     L  +++ S+    +       P    ++NP   S       D        
Sbjct: 293 HHSMT-----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 164 QNSNNDEKVTA---------PSDQQQQQKQQ------------------QQQPKNEPGEV 196
           ++ N D+  T          P++ ++   +                       K++   V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 197 ESSCKNN-----EPSSSQTTTHQ-----TPPASNGDTIIDPKRVKRILANRQSAQRSRVR 246
            +          +P  S  +             N     +    + I+ +    +     
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-----EYALHRSIVDHYNIPKTFDSD 462

Query: 247 KL------QYI--------SELERSVTTLQTEVSALSPRVAFLD----HQRLILNVDNSA 288
            L      QY           +E        E   L   V FLD     Q++  +     
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIE------HPERMTLFRMV-FLDFRFLEQKIRHDSTAWN 515

Query: 289 LKQRIAALAQD-KIFK------DAHQEALKKEIER-LRQVYHQQNIKKMKNNN 333
               I    Q  K +K      D   E L   I   L +   ++N+   K  +
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK--IEENLICSKYTD 566

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           K++K++  N+ +A R R +K      L      L+ +  AL  R   L
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL 49

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 26/65 (40%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVD 285
                KR   NR + +  R RK  ++  LE  V TL+   S+ +     L  +   L  +
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 286 NSALK 290
              LK
Sbjct: 66  LRILK 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.48
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.28
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.24
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.13
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.06
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.94
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.84
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.49
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.45
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.17
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.16
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.51
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.5
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	95.86
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.12
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	94.69
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.68
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.64
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.22
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	93.03
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.89
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.55
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	92.27
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	92.18
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.0
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.69
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	91.47
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.62
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	90.49
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	90.34
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	90.29
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	89.56
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	89.31
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	89.17
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	88.99
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.38
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.24
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.14
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	88.08
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.0
3m48_A	33	General control protein GCN4; leucine zipper, synt	87.62
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	87.58
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	87.54
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.1
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	86.91
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.85
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.65
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.52
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	86.15
2wt7_B	90	Transcription factor MAFB; transcription, transcri	86.01
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	85.77
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	85.76
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	85.39
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	85.37
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	85.35
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.91
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.47
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.14
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	83.86
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	83.8
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	83.57
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	83.55
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	83.32
1fmh_A	33	General control protein GCN4; coiled coil, leucine	83.13
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	82.79
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	82.76
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	82.4
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	82.37
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	82.31
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	82.23
2hy6_A	34	General control protein GCN4; protein design, para	82.06
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	81.98
3m48_A	33	General control protein GCN4; leucine zipper, synt	81.84
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	81.75
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	81.69
2bni_A	34	General control protein GCN4; four helix bundle, a	81.58
1uo4_A	34	General control protein GCN4; four helix bundle, c	81.41
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	81.08
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	81.03
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	81.0
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	80.84
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	80.12

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.48  E-value=3.8e-14  Score=105.93  Aligned_cols=51  Identities=31%  Similarity=0.485  Sum_probs=46.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ  278 (363)
Q Consensus       228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq  278 (363)
                      ||.+|+++||+||++||.||++|+++||.+|..|+.||..|..++..|.+.
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~   51 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL   51 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999998888877643

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.28  E-value=1.6e-11  Score=93.36  Aligned_cols=53  Identities=28%  Similarity=0.332  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          227 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR  279 (363)
Q Consensus       227 ~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~  279 (363)
                      +||.+|+.+||+||++||.||++|+.+|+.+|..|+.+|..|..++..|..+.
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~   53 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK   53 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999998887665443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.24  E-value=2.9e-11  Score=91.11  Aligned_cols=59  Identities=31%  Similarity=0.430  Sum_probs=51.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI  293 (363)
Q Consensus       228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL  293 (363)
                      ||.+|+.+||++|++||.||++|+++||.+|..|+.+|..|..++..|..       |+..|++.|
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~-------e~~~Lk~~l   59 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN-------EVAQLKQLL   59 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Confidence            68899999999999999999999999999999999999999988887754       455555544

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.13  E-value=1.2e-10  Score=88.17  Aligned_cols=51  Identities=37%  Similarity=0.503  Sum_probs=46.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ  278 (363)
Q Consensus       228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq  278 (363)
                      |+.+|..+||+||++||.||++|+.+||.+|..|+.+|..|..++..|..+
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e   51 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ   51 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466888999999999999999999999999999999999999888877543

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.06  E-value=2.8e-10  Score=87.04  Aligned_cols=52  Identities=40%  Similarity=0.507  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ  278 (363)
Q Consensus       226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq  278 (363)
                      |+...|| .+||+||+|||.||++|+.+||.+|..|+.+|..|..++..|.++
T Consensus         8 d~~~~KR-~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~   59 (63)
T 2dgc_A            8 DPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL   59 (63)
T ss_dssp             ---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333333 459999999999999999999999999999999998887777654

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.94  E-value=1.8e-09  Score=84.61  Aligned_cols=65  Identities=26%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALK  290 (363)
Q Consensus       226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LK  290 (363)
                      ++...||...||.|++..|.||.+||.+||.+|..|+.++..|..++..|..++..|..||..||
T Consensus         6 ~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E            6 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44457889999999999999999999999999999999888877666666666666666665553

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.84  E-value=6e-09  Score=79.47  Aligned_cols=59  Identities=27%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI  293 (363)
Q Consensus       228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL  293 (363)
                      |+.+++.+||.+|+|+|.||++++++|+.++..|+.+|..|..++..|.       .|+..||+-|
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~-------~E~~~Lk~ll   60 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA-------KEIQYLKDLI   60 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            6788899999999999999999999999999999999999998887765       4555555543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.49  E-value=8.6e-07  Score=70.62  Aligned_cols=55  Identities=20%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       222 ~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      ....|++-..|..+|.++|+|||.++++...+++.+|..|+.||..|..+|..|.
T Consensus         9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~   63 (78)
T 1gu4_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS   63 (78)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566666678999999999999999999999999999999998887777654

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.45  E-value=1.2e-06  Score=71.06  Aligned_cols=55  Identities=20%  Similarity=0.094  Sum_probs=46.4

Q ss_pred             CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       222 ~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      ....|++-..|..+|.++|+|||.++++...+++.+|..|+.||..|..+|..|.
T Consensus         9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~   63 (87)
T 1hjb_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS   63 (87)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777778999999999999999999999999999999888887776553

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.17  E-value=4.4e-08  Score=82.29  Aligned_cols=50  Identities=36%  Similarity=0.433  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAF  274 (363)
Q Consensus       225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~  274 (363)
                      ...|.+||.++||.+|+.||.||++.+++||.++..|+.+...|..++..
T Consensus        34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~   83 (107)
T 3a5t_A           34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENAS   83 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999888877766666544433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.16  E-value=3.8e-06  Score=68.69  Aligned_cols=69  Identities=30%  Similarity=0.358  Sum_probs=52.4

Q ss_pred             CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          220 NGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA  295 (363)
Q Consensus       220 ~~~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~  295 (363)
                      +.+.....|.+||-++||-+|+-+|.||...+.+||..+..|..+...|..++..+.       .|-..+|+++..
T Consensus        19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~-------~e~d~~k~k~~~   87 (90)
T 2wt7_B           19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA-------RERDAYKVKSEK   87 (90)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            334456788999999999999999999999999999998888877777766555543       344445555444

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.51  E-value=0.00021  Score=51.16  Aligned_cols=40  Identities=33%  Similarity=0.488  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      |.|+.+||.+++.|+..|++|..++..|+       .||..|||-|.
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq-------~EN~mLRqvl~   41 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQ-------NENQMLRHILK   41 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHhc
Confidence            68999999999999999999988888764       78888888653

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.50  E-value=0.036  Score=44.62  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhh
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE----RLRQVYHQ  323 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe----rLRql~~q  323 (363)
                      .-++.||.+|+.+-..+.-|.-++..|.+++..|..+|.+++.....|.+       .++.|+.|..    |||.++|.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~-------en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            45678888888877777777777777777666666666666665555543       4455555543    66777763

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=95.86  E-value=0.0032  Score=51.66  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=29.8

Q ss_pred             CCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696          221 GDTIIDPKRVKRILANRQSAQRSRVRKLQYISELER  256 (363)
Q Consensus       221 ~~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~  256 (363)
                      .......|.+||..+||.+|+++|.||...+++|+.
T Consensus        55 ~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           55 EYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            334457889999999999999999999999988864

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=94.69  E-value=0.52  Score=38.09  Aligned_cols=64  Identities=22%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696          256 RSVTTLQTEVSALSPRVAFLDHQRL-----ILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ  319 (363)
Q Consensus       256 ~kV~~Lq~ENs~Ls~ela~L~qq~~-----~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq  319 (363)
                      .+|..|+.+|..|..++..+..+..     ....+-..||.+|..+..+..--+.+...|..++.+||.
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~   91 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE   91 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677788888888777777765432     246777788888888877766666666667777777765

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.24  E-value=0.34  Score=41.77  Aligned_cols=51  Identities=12%  Similarity=0.085  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      ++.++.|+.++..+..|...|..++..++.++..+..++..|+.++..|..
T Consensus        74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~  124 (138)
T 3hnw_A           74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK  124 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556666666666666666666666666666666666666665555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.68  E-value=2.3  Score=42.14  Aligned_cols=75  Identities=20%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI  326 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~  326 (363)
                      +.|++.++.++.+.+.+..++..++++...+..+-..|++++..++.....+....+++++|++.+++-+.+...
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555566666666555555555555555666666665555555556777777777666654433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.64  E-value=1.3  Score=39.78  Aligned_cols=84  Identities=21%  Similarity=0.325  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHH
Q 037696          238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF-------KDAHQEAL  310 (363)
Q Consensus       238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~-------KeA~~E~L  310 (363)
                      ++=.-.|.||.+  .||...+..++..+.+|..++..|......|..|...|..+|..=......       -.+-+..|
T Consensus        25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L  102 (168)
T 3o0z_A           25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL  102 (168)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555667776  788888888888888888888888888888888888887777654322211       12345678


Q ss_pred             HHHHHHHHHHHhh
Q 037696          311 KKEIERLRQVYHQ  323 (363)
Q Consensus       311 kkEIerLRql~~q  323 (363)
                      ..|+.++|..+..
T Consensus       103 ~~El~~~k~~~~k  115 (168)
T 3o0z_A          103 QEEVKHLKHNLEK  115 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888876653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.22  E-value=1.5  Score=48.38  Aligned_cols=16  Identities=31%  Similarity=0.358  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 037696          282 LNVDNSALKQRIAALA  297 (363)
Q Consensus       282 L~~EN~~LKqrL~~L~  297 (363)
                      |+.||..|++++..|+
T Consensus      1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=93.03  E-value=0.39  Score=36.85  Aligned_cols=41  Identities=27%  Similarity=0.274  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ  291 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq  291 (363)
                      +..-|.+|++|..-|..|+.++..++.....|..||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            44568899999999999999999999999999999999984

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.89  E-value=0.58  Score=37.59  Aligned_cols=46  Identities=28%  Similarity=0.348  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      |.-|..+|..|+.+|..|..++..+......|..||..|+++....
T Consensus        22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w   67 (81)
T 2jee_A           22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW   67 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555555555555555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.55  E-value=3.9  Score=36.73  Aligned_cols=81  Identities=19%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 037696          232 RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALK  311 (363)
Q Consensus       232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~Lk  311 (363)
                      .+.+-=+.=++.|.+--+.+.+|+.+|..|+.|...+..++..+       ..||+.|-.+|..|+.++-..+.   .|.
T Consensus        73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a~~ei---d~~  142 (168)
T 3o0z_A           73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKNNLEI---DLN  142 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhH---HHH
Confidence            44444455567777788888888888888888777776665554       57788888888887765433331   122


Q ss_pred             HHHHHHHHHHh
Q 037696          312 KEIERLRQVYH  322 (363)
Q Consensus       312 kEIerLRql~~  322 (363)
                      -|+..|.+.|.
T Consensus       143 ~eLKalQ~~~e  153 (168)
T 3o0z_A          143 YKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=92.27  E-value=0.87  Score=33.95  Aligned_cols=46  Identities=22%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .+.|-++|+.|..||+.|+.++..=..++..|+.|-..+|.-+..|
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l   50 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL   50 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence            4678899999999999999999888888888888877777655444

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=92.18  E-value=0.33  Score=38.77  Aligned_cols=45  Identities=13%  Similarity=0.197  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA  297 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~  297 (363)
                      ++..+++.++.+|..|..+|..|+++...-..+-..++..|..+.
T Consensus        10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A           10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555554443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.00  E-value=0.79  Score=40.64  Aligned_cols=16  Identities=19%  Similarity=-0.066  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 037696          281 ILNVDNSALKQRIAAL  296 (363)
Q Consensus       281 ~L~~EN~~LKqrL~~L  296 (363)
                      .|..|...|..++..+
T Consensus       100 ~l~DEl~aLqlq~n~l  115 (152)
T 3a7p_A          100 RLNAALISGTIENNVL  115 (152)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.69  E-value=0.72  Score=36.76  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFL--------------DHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL  317 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L--------------~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL  317 (363)
                      .+|..+|..+..++..|..++..+              ...+..++.+-..||.-+..+.-...=-++..|.|+.||.-|
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555544444433              233455666677777777777666656677888899999887


Q ss_pred             HHH
Q 037696          318 RQV  320 (363)
Q Consensus       318 Rql  320 (363)
                      |..
T Consensus        83 kk~   85 (86)
T 3swk_A           83 KKL   85 (86)
T ss_dssp             TTC
T ss_pred             hhc
Confidence            753

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=91.47  E-value=1.9  Score=34.64  Aligned_cols=63  Identities=27%  Similarity=0.322  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI  314 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI  314 (363)
                      ++.-...+.|-.|...|+-+|..|+.+....+-.-+.-|..|+.|.+.+..|++..+.|+.++
T Consensus        15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l   77 (81)
T 3qh9_A           15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            334445556666777777777777777777777777778888888888888888888777776

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.62  E-value=3.1  Score=46.05  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696          254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV  320 (363)
Q Consensus       254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql  320 (363)
                      ++.++..++.+...|..++..+++++..+..|...|++++..+..++.   .....|++|...||+.
T Consensus       975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A          975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            334444444455555555555555555555555555555555443322   1223444555555543

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=90.49  E-value=4.3  Score=31.88  Aligned_cols=47  Identities=6%  Similarity=0.150  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .++..+++.++.+|..|..+|..|+++...-..+-..++..|..+.+
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e   49 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE   49 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777778888888888888777777666666666666666544

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=90.34  E-value=2  Score=34.24  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ...+.++...++.+|..|+.+|..|.+...-.....+.++.|+.+|-..+.
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld   58 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD   58 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444455566778888888888877665555567778888877766655

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=90.29  E-value=2.8  Score=33.75  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696          272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ  324 (363)
Q Consensus       272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq  324 (363)
                      ...+..+...|+.||..|+.+|..              |+.|+..||.++.+.
T Consensus        38 ~~e~~~r~~~Le~EN~~Lr~~v~~--------------L~~E~~~Lr~ll~~~   76 (87)
T 1hjb_A           38 NLETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC
Confidence            344556666777888888887664              567788888877753

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.22  E-value=0.72  Score=36.35  Aligned_cols=45  Identities=16%  Similarity=0.045  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      +|.+||.++..++.-..+|...|..-.++...|..+.+.|..++.
T Consensus        15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~   59 (78)
T 3efg_A           15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG   59 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666665555555444444444444444333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=89.56  E-value=3.1  Score=45.90  Aligned_cols=44  Identities=7%  Similarity=0.186  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA  294 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~  294 (363)
                      +.+|+.++..|+.+...+...+..++.+...|..+...|+.++.
T Consensus       859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555554444444444444444444444444444443

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=89.31  E-value=2.2  Score=33.75  Aligned_cols=39  Identities=28%  Similarity=0.513  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696          271 RVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ  323 (363)
Q Consensus       271 ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q  323 (363)
                      +...+.+....|..||..|+.+|..              |.+|+..||.++.+
T Consensus        37 r~~e~~~r~~~L~~eN~~L~~~v~~--------------L~~E~~~Lr~ll~q   75 (78)
T 1gu4_A           37 RNLETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQ   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence            3344556666777788888876654              46777777776653

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=89.17  E-value=2  Score=33.77  Aligned_cols=48  Identities=13%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          275 LDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       275 L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      +.+++..++.+|..|+.+|..|.+...-.....+.++.|+.+|-..+.
T Consensus         5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld   52 (72)
T 3cve_A            5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445566677788888888888877655444456777777777666554

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=88.99  E-value=3.3  Score=34.37  Aligned_cols=66  Identities=26%  Similarity=0.320  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQR--------------IAALAQDKIFKDAHQEALKKEIE  315 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr--------------L~~L~qe~~~KeA~~E~LkkEIe  315 (363)
                      -+..|..+|..|+.||..|..++..|+-++     |+..|+..              .+.+..+.  ..-..+.|+.||+
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----e~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~--~~~~~e~Lq~E~e   85 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQL-----ERRALQGDYDQSRTKVLHMSLNPTSVARQR--LREDHSQLQAECE   85 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSSCCSCCCTTTEEEEEESSCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccCCccCeeeeecCChHHHHHHH--HHHHHHHHHHHHH
Confidence            456777777777777777777776665332     33222221              11222111  1235689999999


Q ss_pred             HHHHHHh
Q 037696          316 RLRQVYH  322 (363)
Q Consensus       316 rLRql~~  322 (363)
                      +||..+.
T Consensus        86 rLr~~v~   92 (100)
T 1go4_E           86 RLRGLLR   92 (100)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998876

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.38  E-value=9.3  Score=34.75  Aligned_cols=22  Identities=14%  Similarity=0.116  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 037696          246 RKLQYISELERSVTTLQTEVSA  267 (363)
Q Consensus       246 RKkqyIeELE~kV~~Lq~ENs~  267 (363)
                      ++++.+.+|+.....++..-.+
T Consensus        21 ~~~q~~~~le~El~EFqesSrE   42 (189)
T 2v71_A           21 KYKQSFQEARDELVEFQEGSRE   42 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666777666665554444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.24  E-value=4.1  Score=34.99  Aligned_cols=39  Identities=15%  Similarity=0.078  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          260 TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      .++.++..|..++..+......|..|...++.++..+.+
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~  110 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK  110 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.21  E-value=9.2  Score=30.98  Aligned_cols=59  Identities=8%  Similarity=0.098  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      -+.-...-....+.++.+++.++..+..+..+|..|.+++..|..+-..+..+|.....
T Consensus        14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~   72 (101)
T 3u1c_A           14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED   72 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566677777777777777777777777777777777776666666665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.14  E-value=4.1  Score=40.33  Aligned_cols=30  Identities=13%  Similarity=0.103  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          267 ALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       267 ~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .|...+..+.++...+..++..+++++...
T Consensus       506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (597)
T 3oja_B          506 NLNKVFTHLKERQAFKLRETQARRTEADAK  535 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence            344444444455555555555555555433

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=88.08  E-value=2.6  Score=35.25  Aligned_cols=15  Identities=33%  Similarity=0.574  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 037696          254 LERSVTTLQTEVSAL  268 (363)
Q Consensus       254 LE~kV~~Lq~ENs~L  268 (363)
                      ||.++..|+.||..|
T Consensus        42 LE~~~s~le~e~~rl   56 (104)
T 3s9g_A           42 LEKSLSRMEDENNRL   56 (104)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.00  E-value=10  Score=31.30  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696          248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA  305 (363)
Q Consensus       248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA  305 (363)
                      +..|..|+.++.....+...|..++..-...+...+.++..|.+.|..|+..+ |-+|
T Consensus        11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL-FeEA   67 (97)
T 2eqb_B           11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-FDEA   67 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            35577888888889999999999999988999999999999999999997753 4444

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=87.62  E-value=0.61  Score=31.89  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      |..||.+|..|-.+|+.|..+|..|.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk   27 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLK   27 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            56799999999999998888887764

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=87.58  E-value=0.71  Score=31.70  Aligned_cols=27  Identities=26%  Similarity=0.218  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      ++..||.+|..|-.+|+.|..++..|.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            567899999998888888888777664

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=87.54  E-value=2.2  Score=30.74  Aligned_cols=16  Identities=38%  Similarity=0.378  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q 037696          306 HQEALKKEIERLRQVY  321 (363)
Q Consensus       306 ~~E~LkkEIerLRql~  321 (363)
                      +..-|.+||..||...
T Consensus        32 liaylekeianlrkki   47 (49)
T 3he5_A           32 LIAYLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3456678888877643

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.10  E-value=11  Score=30.57  Aligned_cols=79  Identities=9%  Similarity=0.111  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696          237 RQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE  315 (363)
Q Consensus       237 RESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe  315 (363)
                      .+.|..--..-..-+..++.+...++.++..|..++..|...+..+...-...+..|..-.....--++.+..|.+.|+
T Consensus        18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq   96 (101)
T 3u1c_A           18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445556666677777777777777777777766666666666666666655544444555555555554

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=86.91  E-value=4.1  Score=30.04  Aligned_cols=26  Identities=23%  Similarity=0.219  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          271 RVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       271 ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .+..|+.+...|..+|..|+.+|..|
T Consensus        23 ~~~~Le~~~~~L~~~n~~L~~~i~~L   48 (61)
T 1t2k_D           23 WVQSLEKKAEDLSSLNGQLQSEVTLL   48 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666667777777766554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.85  E-value=3.8  Score=45.29  Aligned_cols=19  Identities=16%  Similarity=0.312  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 037696          278 QRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       278 q~~~L~~EN~~LKqrL~~L  296 (363)
                      ++..|..+...|+.++..+
T Consensus       914 ~l~~l~~~~~~Le~~l~el  932 (1184)
T 1i84_S          914 MRVRLAAKKQELEEILHEM  932 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.65  E-value=12  Score=31.24  Aligned_cols=48  Identities=13%  Similarity=0.095  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          274 FLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY  321 (363)
Q Consensus       274 ~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~  321 (363)
                      .++.....|+.+-..+|..++..-++++.---.--.|.-||...|.++
T Consensus        81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL  128 (131)
T 3tnu_A           81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL  128 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            333444455556666666655544443211111124567777766654

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.52  E-value=8.5  Score=34.98  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFL  275 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L  275 (363)
                      .+||..+..++..+..|..++..|
T Consensus        45 ~ELE~eL~~~Ek~~~~L~~~~~~L   68 (189)
T 2v71_A           45 AELEAQLVQAEQRNRDLQADNQRL   68 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443333

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=86.15  E-value=3.7  Score=29.72  Aligned_cols=43  Identities=30%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      +||.+|..|+.-...|..+++.|.-++   ..-...||+||..|+.
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~   44 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLES   44 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence            567777777777777777776665443   4456789999988865

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=86.01  E-value=13  Score=30.30  Aligned_cols=63  Identities=22%  Similarity=0.213  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ..|..+=..|......-..+...+ .+...|+.|+..|..++..|..       +++.+.+|+..+++.|.
T Consensus        24 ~~lKq~RRtlKNRgyAq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~~   86 (90)
T 2wt7_B           24 IRLKQKRRTLKNRGYAQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKSE   86 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            333334444444444445555555 3457888888888888888866       45778889998888876

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=85.77  E-value=0.73  Score=43.71  Aligned_cols=38  Identities=32%  Similarity=0.375  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696          275 LDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ  319 (363)
Q Consensus       275 L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq  319 (363)
                      |+.++..|...|..|+..|..+.+       +.+.|++||++|++
T Consensus        59 L~~ql~~L~arNe~L~~~Lk~ar~-------El~~LkeElerL~s   96 (251)
T 3m9b_A           59 LEARIDSLAARNSKLMETLKEARQ-------QLLALREEVDRLGQ   96 (251)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC
Confidence            333333444444444444444433       33566777777764

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=85.76  E-value=12  Score=29.98  Aligned_cols=77  Identities=6%  Similarity=0.033  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696          241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL  317 (363)
Q Consensus       241 qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL  317 (363)
                      +.-...-....+.|+.++..++..+..+..++..|.+++..|..+-..+..+|......+...+-.......||..|
T Consensus        15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL   91 (101)
T 3u59_A           15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL   91 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556667778888888888888888888888888877777777777777665543333332223334455444

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=85.39  E-value=16  Score=30.88  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=43.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037696          230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEA  309 (363)
Q Consensus       230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~  309 (363)
                      +.-+..|=.+|...=..|+.-|++|+.++..+....                  .....|++|+.-...+...-.+-.|.
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l------------------E~I~vLkaQv~IY~~DF~aERadREk   87 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM------------------ETVPVLKAQADIYKADFQAERHAREK   87 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHccchhhHHH
Confidence            344455567888888888888888888777655522                  12334445555444444444444455


Q ss_pred             HHHHHHHHHHHH
Q 037696          310 LKKEIERLRQVY  321 (363)
Q Consensus       310 LkkEIerLRql~  321 (363)
                      +..|+++|..-+
T Consensus        88 l~~eKe~L~~ql   99 (110)
T 2v4h_A           88 LVEKKEYLQEQL   99 (110)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHH
Confidence            555555555433

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=85.37  E-value=1.5  Score=30.48  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDH  277 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~q  277 (363)
                      +|..||.+|+.|-.++..|..+|..|..
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678999999999888888888877653

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=85.35  E-value=11  Score=33.46  Aligned_cols=40  Identities=15%  Similarity=0.120  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          256 RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA  295 (363)
Q Consensus       256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~  295 (363)
                      ..+..|+.|...|..++..++.+...|..||..|=+|...
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~  135 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK  135 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666677777777777777777777777777666544

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=84.91  E-value=1.2  Score=30.60  Aligned_cols=27  Identities=7%  Similarity=0.146  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      ++..||.+|+.|-.+|..|..+|..|.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk   28 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIX   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            567899999999998888888887764

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.47  E-value=15  Score=30.54  Aligned_cols=41  Identities=24%  Similarity=0.140  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696          280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV  320 (363)
Q Consensus       280 ~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql  320 (363)
                      ..|+.+-..+|..++...++++.---.--.|.-||...|.+
T Consensus        85 ~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL  125 (129)
T 3tnu_B           85 AELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444445544443333221111112345566555544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.14  E-value=25  Score=32.10  Aligned_cols=44  Identities=11%  Similarity=0.102  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      .|..++..+..+...|..++..+..+...+..+-..++.++..+
T Consensus        94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~  137 (256)
T 3na7_A           94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL  137 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444433333333333333333333333

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=83.86  E-value=3.6  Score=32.60  Aligned_cols=45  Identities=27%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      .+||.+|..|+.-...|..+++.|.-++   ..-...||+||..|+..
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~   47 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKF   47 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            4577777777777777777777665443   44567899999998774

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=83.80  E-value=7.4  Score=31.02  Aligned_cols=57  Identities=23%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH  322 (363)
Q Consensus       252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~  322 (363)
                      ..+-++|..|-.||.+|...-..       |..-...|-.++.+|..+       .+.|+.|+..+++...
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNa-------Lnvvk~DLI~rvdELt~E-------~e~l~~El~s~~~~~~   61 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNA-------LNIVKNDLIAKVDELTCE-------KDVLQGELEAVKQAKL   61 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHH
Confidence            34556777777777777654333       333444555556665552       3445555555554443

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=83.57  E-value=2.4  Score=32.07  Aligned_cols=15  Identities=40%  Similarity=0.727  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHhhhhh
Q 037696          312 KEIERLRQVYHQQNI  326 (363)
Q Consensus       312 kEIerLRql~~qq~~  326 (363)
                      .||+||+.++.+.+.
T Consensus        39 QEieRL~~LLkqHgl   53 (58)
T 3a2a_A           39 QEIERLNKLLRQHGL   53 (58)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHcCC
Confidence            566677766665543

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=83.55  E-value=0.11  Score=42.68  Aligned_cols=27  Identities=30%  Similarity=0.325  Sum_probs=23.1

Q ss_pred             CCCHHHHHHHHHhHHHHHHHHHHHHHH
Q 037696          224 IIDPKRVKRILANRQSAQRSRVRKLQY  250 (363)
Q Consensus       224 ~~D~KR~RR~LsNRESAqRSR~RKkqy  250 (363)
                      ...-|.+||..+||.+||++|.||+.-
T Consensus        62 l~lIrdiRRRgKNKvAAqnCRKRKld~   88 (91)
T 2kz5_A           62 LALVRDIRRRGKNKVAAQNYRKRKLET   88 (91)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            345788999999999999999999753

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=83.32  E-value=4.4  Score=29.80  Aligned_cols=15  Identities=33%  Similarity=0.441  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 037696          254 LERSVTTLQTEVSAL  268 (363)
Q Consensus       254 LE~kV~~Lq~ENs~L  268 (363)
                      |..++..|...|..|
T Consensus        14 l~~~l~~L~~rN~rL   28 (51)
T 3m91_A           14 LEARIDSLAARNSKL   28 (51)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=83.13  E-value=2  Score=28.82  Aligned_cols=28  Identities=32%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLDHQ  278 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq  278 (363)
                      +..||.+|.+.+.||-.|..+++.|+++
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehe   30 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHE   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            4567777777777777777777666554

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=82.79  E-value=1.5  Score=30.38  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDH  277 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~q  277 (363)
                      +|..||.+|..|-.++..|..+|..|+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~   29 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEK   29 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567899999988888888888777653

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=82.76  E-value=15  Score=31.08  Aligned_cols=48  Identities=17%  Similarity=0.282  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      +..-+.||..|+.+|..|+.|...-+       +.......||..|+.+++.+..
T Consensus        35 ~~E~q~~v~ql~~~i~~Le~eL~e~r-------~~~q~a~~e~e~Lr~e~~~l~~   82 (120)
T 3i00_A           35 KTESQRVVLQLKGHVSELEADLAEQQ-------HLRQQAADDCEFLRAELDELRR   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555444433       3344455666677766666533

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=82.40  E-value=5.7  Score=29.16  Aligned_cols=14  Identities=43%  Similarity=0.653  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHhh
Q 037696          310 LKKEIERLRQVYHQ  323 (363)
Q Consensus       310 LkkEIerLRql~~q  323 (363)
                      +..||+||+.++.+
T Consensus        30 ~eQEieRL~~LLkq   43 (48)
T 3vmx_A           30 KEQEIERLNKLLKQ   43 (48)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34566666666554

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=82.37  E-value=1.8  Score=29.60  Aligned_cols=26  Identities=8%  Similarity=0.173  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      +..||.+|+.|-.+|..|..+|..|.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56789999988888888888877664

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=82.31  E-value=2.8  Score=32.51  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696          266 SALSPRVAFLDHQRLILNVDNSALKQRIAALAQD  299 (363)
Q Consensus       266 s~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe  299 (363)
                      ..|..+|..|+.....|..||..|+.+|..|..+
T Consensus        32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E   65 (70)
T 1gd2_E           32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEE   65 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555666778888888888777553

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=82.23  E-value=1.7  Score=33.72  Aligned_cols=18  Identities=33%  Similarity=0.289  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 037696          279 RLILNVDNSALKQRIAAL  296 (363)
Q Consensus       279 ~~~L~~EN~~LKqrL~~L  296 (363)
                      ...|..+|..|+++|..|
T Consensus        63 ~~~L~~~~~~L~~~l~~L   80 (83)
T 1nkp_B           63 IDDLKRQNALLEQQVRAL   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            333344555555555543

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=82.06  E-value=1.7  Score=29.88  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      ++..||.+|+.|-.+|..|..++..|.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~   28 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLA   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467899999999998888888887765

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=81.98  E-value=14  Score=27.51  Aligned_cols=25  Identities=32%  Similarity=0.312  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          272 VAFLDHQRLILNVDNSALKQRIAAL  296 (363)
Q Consensus       272 la~L~qq~~~L~~EN~~LKqrL~~L  296 (363)
                      +..|+.+...|..+|..|+.+|..|
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L   49 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANL   49 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666677777777766544

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=81.84  E-value=1.9  Score=29.46  Aligned_cols=18  Identities=22%  Similarity=0.433  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 037696          306 HQEALKKEIERLRQVYHQ  323 (363)
Q Consensus       306 ~~E~LkkEIerLRql~~q  323 (363)
                      .+..|+.||.|||.++++
T Consensus        15 ~n~~Le~EV~RLk~Ll~~   32 (33)
T 3m48_A           15 KNWNLENEVARLKKLVGE   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHHHHHhhc
Confidence            345677888888877764

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=81.75  E-value=5.4  Score=29.26  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI  293 (363)
Q Consensus       255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL  293 (363)
                      |.++..|..-|..|..++..|++.+..++.|+..|+.=|
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL   41 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL   41 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            577888899999999999999999999998887776533

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=81.69  E-value=21  Score=31.53  Aligned_cols=55  Identities=20%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA  305 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA  305 (363)
                      .+..|+.++.....+...|..++..-...+...+.+...+.+.|..|+..+ |-+|
T Consensus        45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL-FeEA   99 (154)
T 2ocy_A           45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-FDEA   99 (154)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            456677777778888888888888888888888888999999998887643 4443

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=81.58  E-value=1.8  Score=29.76  Aligned_cols=27  Identities=7%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      ++..||.+|+.|-.+++.|..+|..|.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk   28 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence            567899999998888888888877664

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=81.41  E-value=1.8  Score=29.71  Aligned_cols=27  Identities=7%  Similarity=0.187  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      +|..||.+|+.|-.+|..|..+|..|.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk   28 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            457899999999998888888887764

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=81.08  E-value=19  Score=30.41  Aligned_cols=67  Identities=21%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696          249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR  318 (363)
Q Consensus       249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR  318 (363)
                      .-|+.|-+.|..|+.++..|..+-...   ...|......|...|..-....+.--..++.|+.|++.|+
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q~~---v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~   81 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQRV---VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR   81 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666664433322   2233333333444333332221111223445555555443

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=81.03  E-value=2.1  Score=29.22  Aligned_cols=26  Identities=12%  Similarity=0.156  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          251 ISELERSVTTLQTEVSALSPRVAFLD  276 (363)
Q Consensus       251 IeELE~kV~~Lq~ENs~Ls~ela~L~  276 (363)
                      |..||.+|+.|-.++..|..+|..|.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~   27 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNT   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            56799999999998888888887764

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=81.00  E-value=6.2  Score=31.20  Aligned_cols=44  Identities=16%  Similarity=0.329  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696          255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ  298 (363)
Q Consensus       255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q  298 (363)
                      |.++..|+....-=..-.+.|..+.-.|..||..|.++|..|.+
T Consensus        31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            34444454444444455566777788889999999999988754

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=80.84  E-value=8  Score=27.85  Aligned_cols=43  Identities=19%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696          250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQR  292 (363)
Q Consensus       250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr  292 (363)
                      .+..||.+|..|+.||..|..+.-.-..-..-|+.|-..||.+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkk   46 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK   46 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3567888888888888887766443333333444444444433

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=80.12  E-value=5.1  Score=39.47  Aligned_cols=13  Identities=31%  Similarity=0.593  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHH
Q 037696          306 HQEALKKEIERLR  318 (363)
Q Consensus       306 ~~E~LkkEIerLR  318 (363)
                      +...|..+|+.||
T Consensus        46 ~rr~l~n~~~elk   58 (403)
T 4etp_A           46 VRRTLHNELQELR   58 (403)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC
Confidence            3344555565554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	91.24

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.24  E-value=0.043  Score=41.62  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037696          227 PKRVKRILANRQSAQRSRVRKLQYISEL  254 (363)
Q Consensus       227 ~KR~RR~LsNRESAqRSR~RKkqyIeEL  254 (363)
                      -+-+||.=+|+.+||++|.||....++|
T Consensus        47 irDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          47 IRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            4678999999999999999999876653